Cant write out vep annotated vcf file


#1

I have no problem using export_vcf on a normal MatrixTable after filtering, but when i use vep to annotate the file and apply the same function, it gives me an IO:Error, file or directory does not exist.
I have checked and the directory to which I try to write does exist.
What is wrong?
KR Mathias.


#2

What’s the full stack trace? This is probably an error related to VEP, not write.


#3

You are probably right, this is another example of failure.


#4

What VEP config are you using?