# Error summary: IllegalArgumentException: requirement failed **URL:** \ **Category:** Hail Query & hailctl\ **Created:** [February 10, 2022, 8:30pm UTC](https://discuss.hail.is/t/error-summary-illegalargumentexception-requirement-failed/2474 "2022-02-10T20:30:17Z")\ **Posts on this page:** 8\ **Page:** 1
**Author:** ![yluo411](https://avatars.discourse-cdn.com/v4/letter/y/b5a626/32.png) [@yluo411](https://discuss.hail.is/u/yluo411)\ **Post date:** [February 10, 2022, 8:30pm UTC](https://discuss.hail.is/t/error-summary-illegalargumentexception-requirement-failed/2474/1 "2022-02-10T20:30:17Z")
Hi Hail Team, I am running the following code: print(“Perform sample QC on autosomes”) lcr\_intervals = hl.import\_locus\_intervals(lcr) lcr\_filtered = vcf\_mt.filter\_rows( # remove filtered variants, LCR variants, and ChrX variants ((vcf\_mt.filters.length() \> 0) | (hl.is\_defined(lcr\_intervals[vcf\_mt.locus])) | (vcf\_mt.locus.contig == ‘chrX’)), keep=False ) summary.append((‘LCRPruned’, lcr\_filtered)) print(“Exporting Sample QC stats for LCR-pruned variants”) sample\_df = hl.sample\_qc(lcr\_filtered, name=‘sqc’) sample\_df=sample\_df.cols().to\_pandas() However, I got an error message like this: * * * FatalError Traceback (most recent call last) /tmp/ipykernel\_80073/2129889008.py in 3 # export sample statistics considering LCR filtered variants 4 sample\_df = hl.sample\_qc(lcr\_filtered, name=‘sqc’) ----\> 5 sample\_df=sample\_df.cols().to\_pandas() 6 7 # .cols().to\_pandas().rename( in to\_pandas(self, flatten) ~/.conda/envs/myconda\_env/lib/python3.7/site-packages/hail/typecheck/check.py in wrapper(\_\_original\_func, \*args, \*\*kwargs) 575 def wrapper(_original\_func, \*args, \*\*kwargs): 576 args, kwargs_ = check\_all(\_\_original\_func, args, kwargs, checkers, is\_method=is\_method) → 577 return _original\_func(\*args, \*\*kwargs_) 578 579 return wrapper ~/.conda/envs/myconda\_env/lib/python3.7/site-packages/hail/table.py in to\_pandas(self, flatten) 3255 dtypes\_struct = table.row.dtype 3256 collect\_dict = {key: hl.agg.collect(value) for key, value in table.row.items()} → 3257 column\_struct\_array = table.aggregate(hl.struct(\*\*collect\_dict)) 3258 columns = list(column\_struct\_array.keys()) 3259 data\_dict = {} in aggregate(self, expr, \_localize) ~/.conda/envs/myconda\_env/lib/python3.7/site-packages/hail/typecheck/check.py in wrapper(\_\_original\_func, \*args, \*\*kwargs) 575 def wrapper(_original\_func, \*args, \*\*kwargs): 576 args, kwargs_ = check\_all(\_\_original\_func, args, kwargs, checkers, is\_method=is\_method) → 577 return _original\_func(\*args, \*\*kwargs_) 578 579 return wrapper ~/.conda/envs/myconda\_env/lib/python3.7/site-packages/hail/table.py in aggregate(self, expr, \_localize) 1176 1177 if \_localize: → 1178 return Env.backend().execute(hl.ir.MakeTuple([agg\_ir]))[0] 1179 1180 return construct\_expr(ir.LiftMeOut(agg\_ir), expr.dtype) ~/.conda/envs/myconda\_env/lib/python3.7/site-packages/hail/backend/py4j\_backend.py in execute(self, ir, timed) 108 raise HailUserError(message\_and\_trace) from None 109 → 110 raise e ~/.conda/envs/myconda\_env/lib/python3.7/site-packages/hail/backend/py4j\_backend.py in execute(self, ir, timed) 84 # print(self.\_hail\_package.expr.ir.Pretty.apply(jir, True, -1)) 85 try: —\> 86 result\_tuple = self.\_jhc.backend().executeEncode(jir, stream\_codec) 87 (result, timings) = (result\_tuple.\_1(), result\_tuple.\_2()) 88 value = ir.typ.\_from\_encoding(result) ~/.conda/envs/myconda\_env/lib/python3.7/site-packages/py4j/java\_gateway.py in **call** (self, \*args) 1303 answer = self.gateway\_client.send\_command(command) 1304 return\_value = get\_return\_value( → 1305 answer, self.gateway\_client, self.target\_id, self.name) 1306 1307 for temp\_arg in temp\_args: ~/.conda/envs/myconda\_env/lib/python3.7/site-packages/hail/backend/py4j\_backend.py in deco(\*args, \*\*kwargs) 29 raise FatalError(’%s\n\nJava stack trace:\n%s\n’ 30 ‘Hail version: %s\n’ —\> 31 ‘Error summary: %s’ % (deepest, full, hail. **version** , deepest), error\_id) from None 32 except pyspark.sql.utils.CapturedException as e: 33 raise FatalError(’%s\n\nJava stack trace:\n%s\n’ FatalError: IllegalArgumentException: requirement failed Java stack trace: java.lang.IllegalArgumentException: requirement failed at scala.Predef$.require(Predef.scala:268) at is.hail.rvd.RVDPartitioner.(RVDPartitioner.scala:52) at is.hail.rvd.RVDPartitioner.extendKeySamePartitions(RVDPartitioner.scala:141) at is.hail.expr.ir.LoweredTableReader$$anon$2.coerce(TableIR.scala:382) at is.hail.expr.ir.GenericTableValue.toTableStage(GenericTableValue.scala:162) at is.hail.io.vcf.MatrixVCFReader.lower(LoadVCF.scala:1790) at is.hail.expr.ir.lowering.LowerTableIR$.applyTable(LowerTableIR.scala:581) at is.hail.expr.ir.lowering.LowerTableIR$.lower$2(LowerTableIR.scala:561) at is.hail.expr.ir.lowering.LowerTableIR$.applyTable(LowerTableIR.scala:1308) at is.hail.expr.ir.lowering.LowerTableIR$.lower$2(LowerTableIR.scala:561) at is.hail.expr.ir.lowering.LowerTableIR$.applyTable(LowerTableIR.scala:1279) at is.hail.expr.ir.lowering.LowerTableIR$.lower$2(LowerTableIR.scala:561) at is.hail.expr.ir.lowering.LowerTableIR$.applyTable(LowerTableIR.scala:1035) at is.hail.expr.ir.lowering.LowerTableIR$.lower$2(LowerTableIR.scala:561) at is.hail.expr.ir.lowering.LowerTableIR$.applyTable(LowerTableIR.scala:653) at is.hail.expr.ir.lowering.LowerTableIR$.lower$1(LowerTableIR.scala:394) at is.hail.expr.ir.lowering.LowerTableIR$.apply(LowerTableIR.scala:420) at is.hail.expr.ir.lowering.LowerToCDA$.lower(LowerToCDA.scala:69) at is.hail.expr.ir.lowering.LowerToCDA$.apply(LowerToCDA.scala:18) at is.hail.expr.ir.lowering.LowerToDistributedArrayPass.transform(LoweringPass.scala:77) at is.hail.expr.ir.LowerOrInterpretNonCompilable$.evaluate$1(LowerOrInterpretNonCompilable.scala:27) at is.hail.expr.ir.LowerOrInterpretNonCompilable$.rewrite$1(LowerOrInterpretNonCompilable.scala:67) at is.hail.expr.ir.LowerOrInterpretNonCompilable$.rewrite$1(LowerOrInterpretNonCompilable.scala:53) at is.hail.expr.ir.LowerOrInterpretNonCompilable$.apply(LowerOrInterpretNonCompilable.scala:72) at is.hail.expr.ir.lowering.LowerOrInterpretNonCompilablePass$.transform(LoweringPass.scala:69) at is.hail.expr.ir.lowering.LoweringPass.$anonfun$apply$3(LoweringPass.scala:16) at is.hail.utils.ExecutionTimer.time(ExecutionTimer.scala:81) at is.hail.expr.ir.lowering.LoweringPass.$anonfun$apply$1(LoweringPass.scala:16) at is.hail.utils.ExecutionTimer.time(ExecutionTimer.scala:81) at is.hail.expr.ir.lowering.LoweringPass.apply(LoweringPass.scala:14) at is.hail.expr.ir.lowering.LoweringPass.apply$(LoweringPass.scala:13) at is.hail.expr.ir.lowering.LowerOrInterpretNonCompilablePass$.apply(LoweringPass.scala:64) at is.hail.expr.ir.lowering.LoweringPipeline.$anonfun$apply$1(LoweringPipeline.scala:15) at is.hail.expr.ir.lowering.LoweringPipeline.$anonfun$apply$1$adapted(LoweringPipeline.scala:13) at scala.collection.IndexedSeqOptimized.foreach(IndexedSeqOptimized.scala:36) at scala.collection.IndexedSeqOptimized.foreach$(IndexedSeqOptimized.scala:33) at scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:38) at is.hail.expr.ir.lowering.LoweringPipeline.apply(LoweringPipeline.scala:13) at is.hail.expr.ir.CompileAndEvaluate$.\_apply(CompileAndEvaluate.scala:47) at is.hail.backend.spark.SparkBackend.\_execute(SparkBackend.scala:381) at is.hail.backend.spark.SparkBackend.$anonfun$executeEncode$2(SparkBackend.scala:417) at is.hail.backend.ExecuteContext$.$anonfun$scoped$3(ExecuteContext.scala:47) at is.hail.utils.package$.using(package.scala:638) at is.hail.backend.ExecuteContext$.$anonfun$scoped$2(ExecuteContext.scala:47) at is.hail.utils.package$.using(package.scala:638) at is.hail.annotations.RegionPool$.scoped(RegionPool.scala:17) at is.hail.backend.ExecuteContext$.scoped(ExecuteContext.scala:46) at is.hail.backend.spark.SparkBackend.withExecuteContext(SparkBackend.scala:275) at is.hail.backend.spark.SparkBackend.$anonfun$executeEncode$1(SparkBackend.scala:414) at is.hail.utils.ExecutionTimer$.time(ExecutionTimer.scala:52) at is.hail.backend.spark.SparkBackend.executeEncode(SparkBackend.scala:413) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244) at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357) at py4j.Gateway.invoke(Gateway.java:282) at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132) at py4j.commands.CallCommand.execute(CallCommand.java:79) at py4j.GatewayConnection.run(GatewayConnection.java:238) at java.lang.Thread.run(Thread.java:748) Hail version: 0.2.82-290eaf334217 Error summary: IllegalArgumentException: requirement failed I would like to appreciate for any helps and suggestions. Thanks! ---
**Author:** ![pwc2](https://yyz2.discourse-cdn.com/flex036/user_avatar/discuss.hail.is/pwc2/32/595_2.png) [@pwc2](https://discuss.hail.is/u/pwc2)\ **Post date:** [February 11, 2022, 3:45pm UTC](https://discuss.hail.is/t/error-summary-illegalargumentexception-requirement-failed/2474/2 "2022-02-11T15:45:09Z")
Hi @yluo411, sorry that you are running into issues with Hail. This problem is caused by a known issue ([#11335](https://github.com/hail-is/hail/issues/11335)) which we don’t have a fix for yet, but the team is working on it. ---
**Author:** ![yluo411](https://avatars.discourse-cdn.com/v4/letter/y/b5a626/32.png) [@yluo411](https://discuss.hail.is/u/yluo411)\ **Post date:** [February 14, 2022, 7:05pm UTC](https://discuss.hail.is/t/error-summary-illegalargumentexception-requirement-failed/2474/3 "2022-02-14T19:05:09Z")
Thank you so much for your reply. May I kindly double check whether the issue has been resolved. And what should I do regarding this issue. I just rerun it and looks like my code has the same error. Do I need to reinstall and install anything? Thanks ---
**Author:** ![johnc1231](https://yyz2.discourse-cdn.com/flex036/user_avatar/discuss.hail.is/johnc1231/32/286_2.png) [@johnc1231](https://discuss.hail.is/u/johnc1231)\ **Post date:** [February 14, 2022, 7:50pm UTC](https://discuss.hail.is/t/error-summary-illegalargumentexception-requirement-failed/2474/4 "2022-02-14T19:50:27Z")
The main hail branch on github has been updated, but we haven’t released a new version with the fix yet. You can either build hail from source or wait a day or two for hail 0.2.85 to be released. ---
**Author:** ![yluo411](https://avatars.discourse-cdn.com/v4/letter/y/b5a626/32.png) [@yluo411](https://discuss.hail.is/u/yluo411)\ **Post date:** [February 14, 2022, 7:51pm UTC](https://discuss.hail.is/t/error-summary-illegalargumentexception-requirement-failed/2474/5 "2022-02-14T19:51:54Z")
I see. Thank you so much for your quick reply. ---
**Author:** ![johnc1231](https://yyz2.discourse-cdn.com/flex036/user_avatar/discuss.hail.is/johnc1231/32/286_2.png) [@johnc1231](https://discuss.hail.is/u/johnc1231)\ **Post date:** [February 14, 2022, 9:57pm UTC](https://discuss.hail.is/t/error-summary-illegalargumentexception-requirement-failed/2474/6 "2022-02-14T21:57:32Z")
The PR that will cause a new version to be released is here: [Release 0.2.85 by johnc1231 · Pull Request #11363 · hail-is/hail · GitHub](https://github.com/hail-is/hail/pull/11363) Should go in tomorrow. ---
**Author:** ![johnc1231](https://yyz2.discourse-cdn.com/flex036/user_avatar/discuss.hail.is/johnc1231/32/286_2.png) [@johnc1231](https://discuss.hail.is/u/johnc1231)\ **Post date:** [February 15, 2022, 12:56pm UTC](https://discuss.hail.is/t/error-summary-illegalargumentexception-requirement-failed/2474/7 "2022-02-15T12:56:22Z")
We released hail 0.2.85. Update to latest and this error should be resolved. ---
**Author:** ![yluo411](https://avatars.discourse-cdn.com/v4/letter/y/b5a626/32.png) [@yluo411](https://discuss.hail.is/u/yluo411)\ **Post date:** [February 19, 2022, 4:25am UTC](https://discuss.hail.is/t/error-summary-illegalargumentexception-requirement-failed/2474/8 "2022-02-19T04:25:19Z")
Thank you so much. The code can run now.