Permutation available?


Is there a way to do permutation using Hail? If not, is there a way to export the genotypes after QC filtering so I can use a different program for permutation?


Hi Rebecca, if you mean permutation testing, we don’t directly support that yet, but you can definitely export a variant dataset! See all the export commands here.

If you let us know what particular functionality you’re looking for, it will help out planning. Thanks!