# What is the setup required to perform annotations using vep?

**URL:** <https://discuss.hail.is/t/what-is-the-setup-required-to-perform-annotations-using-vep/736>\
**Category:** Hail Query & hailctl\
**Created:** [October 30, 2018, 10:37pm UTC](https://discuss.hail.is/t/what-is-the-setup-required-to-perform-annotations-using-vep/736 "2018-10-30T22:37:38Z")\
**Posts on this page:** 1\
**Page:** 1

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**Author:** ![Monica\_Sudarsanam](https://avatars.discourse-cdn.com/v4/letter/m/3be4f8/32.png) [@Monica\_Sudarsanam](https://discuss.hail.is/u/Monica_Sudarsanam)\
**Post date:** [October 30, 2018, 10:37pm UTC](https://discuss.hail.is/t/what-is-the-setup-required-to-perform-annotations-using-vep/736/1 "2018-10-30T22:37:38Z")

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Hello everyone,

I am trying to add annotations to my vcf file using vep.

I used the following line to configure vep while creating my cluster on google cloud ( I am using windows 10)

**–initialization-actions “gs://dataproc-initialization-actions/jupyter/jupyter.sh,gs://dataproc-initialization-actions/conda/bootstrap-conda.sh,gs://hail-common/cloudtools/init\_notebook1.py,gs://hail-common/vep/vep/vep85-init.sh” ^**

And i used the following line to add annotations to my vcf file

**result = hl.vep(vcf\_file, “gs://hail-common/vep/vep/vep85-gcloud.json”)**

Then i received following error while trying to export the data. I am wondering if i need any additional setup for vep.  
Thanks in advance.

**Hail version: devel-0643c11962e8**  
**Error summary: HailException: vep command ‘/usr/bin/perl /vep/variant\_effect\_predictor/variant\_effect\_predictor.pl --format vcf --json --everything --allele\_number --no\_stats --cache --offline --dir /vep --fasta /vep/homo\_sapiens/85\_GRCh37/Homo\_sapiens.GRCh37.75.dna.primary\_assembly.fa --minimal --assembly GRCh37 --plugin LoF,human\_ancestor\_fa:/vep/loftee\_data/human\_ancestor.fa.gz,filter\_position:0.05,min\_intron\_size:15,conservation\_file:/vep/loftee\_data/phylocsf.sql -o STDOUT’ failed with non-zero exit status 2**
