2021-04-12 16:02:19 Hail: INFO: Running Hail version 0.2.64-1ef70187dc78 2021-04-12 16:02:20 SparkContext: WARN: Using an existing SparkContext; some configuration may not take effect. 2021-04-12 16:02:21 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.12:42120) with ID 1 2021-04-12 16:02:21 ExecutorAllocationManager: INFO: New executor 1 has registered (new total is 1) 2021-04-12 16:02:21 BlockManagerMasterEndpoint: INFO: Registering block manager berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 with 5.6 GB RAM, BlockManagerId(1, berylc-w-1.us-central1-b.c.human-genetics-001.internal, 42595, None) 2021-04-12 16:02:22 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.10:51740) with ID 2 2021-04-12 16:02:22 ExecutorAllocationManager: INFO: New executor 2 has registered (new total is 2) 2021-04-12 16:02:22 BlockManagerMasterEndpoint: INFO: Registering block manager berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 with 5.6 GB RAM, BlockManagerId(2, berylc-w-0.us-central1-b.c.human-genetics-001.internal, 45495, None) 2021-04-12 16:02:22 Hail: INFO: Using 2586 intervals with default whole-genome size 1200000 as partitioning for GVCF import 2021-04-12 16:02:22 Hail: INFO: GVCF combiner plan: Branch factor: 100 Batch size: 100 Combining 866 input files in 2 phases with 2 total jobs. Phase 1: 1 job corresponding to 9 intermediate output files. Phase 2: 1 job corresponding to 1 final output file. 2021-04-12 16:02:22 Hail: INFO: Starting phase 1/2, merging 866 input GVCFs in 1 job. 2021-04-12 16:02:22 Hail: INFO: Starting phase 1/2, job 1/1 to create 9 merged files, corresponding to ~50.0% of total I/O. 2021-04-12 16:02:22 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:23 MemoryStore: INFO: Block broadcast_0 stored as values in memory (estimated size 2.3 MB, free 21.7 GB) 2021-04-12 16:02:23 MemoryStore: INFO: Block broadcast_0_piece0 stored as bytes in memory (estimated size 123.7 KB, free 21.7 GB) 2021-04-12 16:02:23 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 123.7 KB, free: 21.7 GB) 2021-04-12 16:02:23 SparkContext: INFO: Created broadcast 0 from broadcast at SparkBackend.scala:259 2021-04-12 16:02:23 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:23 root: INFO: timing SparkBackend.parse_value_ir total 1.117s self 1.117s children 0.000ms %children 0.00% 2021-04-12 16:02:23 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:23 root: INFO: starting execution of query hail_query_1 of initial size 15 2021-04-12 16:02:23 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 15: (ToArray (StreamMap __uid_3 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __uid_3)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __uid_3)))) (Apply includesStart () Boolean (Ref __uid_3)) (Apply includesEnd () Boolean (Ref __uid_3))))) 2021-04-12 16:02:24 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 15: (ToArray (StreamMap __iruid_2 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_2)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_2)))) (Apply includesStart () Boolean (Ref __iruid_2)) (Apply includesEnd () Boolean (Ref __iruid_2))))) 2021-04-12 16:02:24 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 15: (ToArray (StreamMap __iruid_2 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_2)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_2)))) (Apply includesStart () Boolean (Ref __iruid_2)) (Apply includesEnd () Boolean (Ref __iruid_2))))) 2021-04-12 16:02:24 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 15: (ToArray (StreamMap __iruid_5 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_5)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_5)))) (Apply includesStart () Boolean (Ref __iruid_5)) (Apply includesEnd () Boolean (Ref __iruid_5))))) 2021-04-12 16:02:24 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 15: (ToArray (StreamMap __iruid_5 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_5)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_5)))) (Apply includesStart () Boolean (Ref __iruid_5)) (Apply includesEnd () Boolean (Ref __iruid_5))))) 2021-04-12 16:02:24 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 15: (ToArray (StreamMap __iruid_8 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_8)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_8)))) (Apply includesStart () Boolean (Ref __iruid_8)) (Apply includesEnd () Boolean (Ref __iruid_8))))) 2021-04-12 16:02:24 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 16: (MakeTuple (0) (ToArray (StreamMap __iruid_8 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_8)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_8)))) (Apply includesStart () Boolean (Ref __iruid_8)) (Apply includesEnd () Boolean (Ref __iruid_8)))))) 2021-04-12 16:02:24 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 16: (MakeTuple (0) (ToArray (StreamMap __iruid_11 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_11)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_11)))) (Apply includesStart () Boolean (Ref __iruid_11)) (Apply includesEnd () Boolean (Ref __iruid_11)))))) 2021-04-12 16:02:24 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 16: (MakeTuple (0) (ToArray (StreamMap __iruid_11 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_11)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_11)))) (Apply includesStart () Boolean (Ref __iruid_11)) (Apply includesEnd () Boolean (Ref __iruid_11)))))) 2021-04-12 16:02:24 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 16: (MakeTuple (0) (ToArray (StreamMap __iruid_14 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_14)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_14)))) (Apply includesStart () Boolean (Ref __iruid_14)) (Apply includesEnd () Boolean (Ref __iruid_14)))))) 2021-04-12 16:02:24 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 16: (MakeTuple (0) (ToArray (StreamMap __iruid_14 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_14)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_14)))) (Apply includesStart () Boolean (Ref __iruid_14)) (Apply includesEnd () Boolean (Ref __iruid_14)))))) 2021-04-12 16:02:24 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 16: (MakeTuple (0) (ToArray (StreamMap __iruid_17 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_17)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_17)))) (Apply includesStart () Boolean (Ref __iruid_17)) (Apply includesEnd () Boolean (Ref __iruid_17)))))) 2021-04-12 16:02:24 root: INFO: encoder cache miss (0 hits, 1 misses, 0.000) 2021-04-12 16:02:24 root: INFO: instruction count: 3: __C26etypeEncode. 2021-04-12 16:02:24 root: INFO: instruction count: 5: __C26etypeEncode.apply 2021-04-12 16:02:24 root: INFO: instruction count: 13: __C26etypeEncode.__m27ENCODE_r_tuple_of_r_array_of_r_interval_of_r_locusEND_TO_r_struct_of_r_array_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDr_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND 2021-04-12 16:02:24 root: INFO: instruction count: 45: __C26etypeEncode.__m28ENCODE_r_array_of_r_interval_of_r_locus_TO_r_array_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDr_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND 2021-04-12 16:02:24 root: INFO: instruction count: 51: __C26etypeEncode.__m29ENCODE_r_interval_of_r_locus_TO_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDr_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND 2021-04-12 16:02:24 root: INFO: instruction count: 39: __C26etypeEncode.__m30ENCODE_r_locus_TO_r_struct_of_r_binaryANDr_int32END 2021-04-12 16:02:24 root: INFO: instruction count: 18: __C26etypeEncode.__m31ENCODE_r_string_TO_r_binary 2021-04-12 16:02:24 root: INFO: instruction count: 6: __C26etypeEncode.__m32ENCODE_r_int32_TO_r_int32 2021-04-12 16:02:24 root: INFO: instruction count: 6: __C26etypeEncode.__m33ENCODE_r_bool_TO_r_bool 2021-04-12 16:02:24 MemoryStore: INFO: Block broadcast_1 stored as values in memory (estimated size 67.7 KB, free 21.7 GB) 2021-04-12 16:02:24 MemoryStore: INFO: Block broadcast_1_piece0 stored as bytes in memory (estimated size 31.0 KB, free 21.7 GB) 2021-04-12 16:02:24 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 31.0 KB, free: 21.7 GB) 2021-04-12 16:02:24 SparkContext: INFO: Created broadcast 1 from broadcast at SparkBackend.scala:259 2021-04-12 16:02:24 root: INFO: instruction count: 3: __C1Compiled. 2021-04-12 16:02:24 root: INFO: instruction count: 297: __C1Compiled.apply 2021-04-12 16:02:24 root: INFO: instruction count: 8: __C1Compiled.__m15includesStart 2021-04-12 16:02:24 root: INFO: instruction count: 8: __C1Compiled.__m16includesEnd 2021-04-12 16:02:24 root: INFO: instruction count: 9: __C1Compiled.setPartitionIndex 2021-04-12 16:02:24 root: INFO: instruction count: 4: __C1Compiled.addPartitionRegion 2021-04-12 16:02:24 root: INFO: instruction count: 4: __C1Compiled.setPool 2021-04-12 16:02:24 root: INFO: instruction count: 50: __C1Compiled.addLiterals 2021-04-12 16:02:24 root: INFO: instruction count: 23: __C1Compiled.__m19DECODE_r_struct_of_r_array_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDr_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND_TO_r_tuple_of_r_array_of_r_interval_of_r_locusEND 2021-04-12 16:02:24 root: INFO: instruction count: 64: __C1Compiled.__m20INPLACE_DECODE_r_array_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDr_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND_TO_r_array_of_r_interval_of_r_locus 2021-04-12 16:02:24 root: INFO: instruction count: 36: __C1Compiled.__m21INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDr_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND_TO_r_interval_of_r_locus 2021-04-12 16:02:24 root: INFO: instruction count: 22: __C1Compiled.__m22INPLACE_DECODE_r_struct_of_r_binaryANDr_int32END_TO_r_locus 2021-04-12 16:02:24 root: INFO: instruction count: 33: __C1Compiled.__m23INPLACE_DECODE_r_binary_TO_r_string 2021-04-12 16:02:24 root: INFO: instruction count: 10: __C1Compiled.__m24INPLACE_DECODE_r_int32_TO_r_int32 2021-04-12 16:02:24 root: INFO: instruction count: 10: __C1Compiled.__m25INPLACE_DECODE_r_bool_TO_r_bool 2021-04-12 16:02:24 root: INFO: RegionPool: REPORT_THRESHOLD: 289.6K allocated (128.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:24 root: INFO: finished execution of query hail_query_1 2021-04-12 16:02:24 root: INFO: RegionPool: FREE: 417.6K allocated (256.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON total 838.972ms self 85.908ms children 753.064ms %children 89.76% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR total 142.158ms self 0.938ms children 141.220ms %children 99.34% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.768ms self 0.768ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation total 140.364ms self 64.729ms children 75.635ms %children 53.88% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize total 75.635ms self 1.781ms children 73.854ms %children 97.65% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 5.456ms self 5.456ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 8.337ms self 8.337ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 8.875ms self 8.875ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 14.455ms self 14.455ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 1.924ms self 1.924ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 25.589ms self 25.589ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.918ms self 0.918ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.081ms self 0.081ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.222ms self 0.222ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 2.086ms self 2.086ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.159ms self 0.159ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 1.152ms self 1.152ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.919ms self 0.919ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.118ms self 0.118ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.190ms self 0.190ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 1.381ms self 1.381ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.202ms self 0.202ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 1.791ms self 1.791ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.089ms self 0.089ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable total 12.326ms self 0.025ms children 12.301ms %children 99.80% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.026ms self 0.026ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/LoweringTransformation total 12.205ms self 12.205ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.070ms self 0.070ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable total 20.233ms self 0.020ms children 20.213ms %children 99.90% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.026ms self 0.026ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation total 20.165ms self 5.326ms children 14.839ms %children 73.59% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize total 14.839ms self 0.186ms children 14.653ms %children 98.74% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.244ms self 0.244ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.125ms self 0.125ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.237ms self 0.237ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 2.493ms self 2.493ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.147ms self 0.147ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 1.495ms self 1.495ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.738ms self 0.738ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.083ms self 0.083ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.350ms self 0.350ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 1.584ms self 1.584ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.110ms self 0.110ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 1.844ms self 1.844ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 1.230ms self 1.230ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.172ms self 0.172ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.283ms self 0.283ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 1.778ms self 1.778ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.176ms self 0.176ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 1.564ms self 1.564ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.022ms self 0.022ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable total 2.119ms self 0.019ms children 2.100ms %children 99.10% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.039ms self 0.039ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/LoweringTransformation total 1.814ms self 1.814ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.246ms self 0.246ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable total 20.208ms self 0.078ms children 20.130ms %children 99.62% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.019ms self 0.019ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation total 20.086ms self 4.594ms children 15.491ms %children 77.13% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize total 15.491ms self 0.112ms children 15.380ms %children 99.28% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.191ms self 0.191ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.091ms self 0.091ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.198ms self 0.198ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 1.234ms self 1.234ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.174ms self 0.174ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 1.923ms self 1.923ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.840ms self 0.840ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.104ms self 0.104ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.227ms self 0.227ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 1.210ms self 1.210ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.110ms self 0.110ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 1.056ms self 1.056ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.723ms self 0.723ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.097ms self 0.097ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.325ms self 0.325ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 1.172ms self 1.172ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.160ms self 0.160ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 5.546ms self 5.546ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.025ms self 0.025ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile total 505.438ms self 390.952ms children 114.485ms %children 22.65% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR total 27.562ms self 0.023ms children 27.538ms %children 99.92% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/Verify total 0.041ms self 0.041ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation total 27.456ms self 12.408ms children 15.048ms %children 54.81% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize total 15.048ms self 0.169ms children 14.879ms %children 98.88% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.726ms self 0.726ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.122ms self 0.122ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.412ms self 0.412ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 2.195ms self 2.195ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.204ms self 0.204ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 3.594ms self 3.594ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.861ms self 0.861ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.177ms self 0.177ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.210ms self 0.210ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 1.901ms self 1.901ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.114ms self 0.114ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 1.060ms self 1.060ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.668ms self 0.668ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.080ms self 0.080ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.185ms self 0.185ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 1.055ms self 1.055ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.092ms self 0.092ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 1.224ms self 1.224ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, initial IR/Verify total 0.041ms self 0.041ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/InlineApplyIR total 0.529ms self 0.017ms children 0.512ms %children 96.80% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/InlineApplyIR/Verify total 0.040ms self 0.040ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/InlineApplyIR/LoweringTransformation total 0.425ms self 0.425ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/InlineApplyIR/Verify total 0.047ms self 0.047ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR total 17.079ms self 0.036ms children 17.043ms %children 99.79% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/Verify total 0.017ms self 0.017ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation total 17.002ms self 4.344ms children 12.658ms %children 74.45% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize total 12.658ms self 0.135ms children 12.524ms %children 98.93% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/FoldConstants total 0.298ms self 0.298ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.152ms self 0.152ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/Simplify total 0.300ms self 0.300ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardLets total 1.381ms self 1.381ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.096ms self 0.096ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/PruneDeadFields total 1.026ms self 1.026ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/FoldConstants total 1.505ms self 1.505ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.095ms self 0.095ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/Simplify total 0.208ms self 0.208ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardLets total 1.215ms self 1.215ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.093ms self 0.093ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/PruneDeadFields total 1.107ms self 1.107ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/FoldConstants total 0.774ms self 0.774ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.102ms self 0.102ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/Simplify total 0.284ms self 0.284ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardLets total 2.810ms self 2.810ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.079ms self 0.079ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/PruneDeadFields total 0.999ms self 0.999ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after InlineApplyIR/Verify total 0.024ms self 0.024ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/LowerArrayAggsToRunAggs total 55.143ms self 0.023ms children 55.120ms %children 99.96% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/LowerArrayAggsToRunAggs/Verify total 0.044ms self 0.044ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/LowerArrayAggsToRunAggs/LoweringTransformation total 54.768ms self 54.768ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/LowerArrayAggsToRunAggs/Verify total 0.308ms self 0.308ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs total 14.173ms self 0.014ms children 14.159ms %children 99.90% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/Verify total 0.018ms self 0.018ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation total 14.110ms self 4.439ms children 9.672ms %children 68.54% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize total 9.672ms self 0.135ms children 9.537ms %children 98.61% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/FoldConstants total 0.372ms self 0.372ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.152ms self 0.152ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/Simplify total 0.298ms self 0.298ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardLets total 1.593ms self 1.593ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardRelationalLets total 0.131ms self 0.131ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/PruneDeadFields total 1.250ms self 1.250ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/FoldConstants total 0.704ms self 0.704ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.082ms self 0.082ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/Simplify total 0.212ms self 0.212ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardLets total 0.962ms self 0.962ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardRelationalLets total 0.078ms self 0.078ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/PruneDeadFields total 0.771ms self 0.771ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/FoldConstants total 0.679ms self 0.679ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.080ms self 0.080ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/Simplify total 0.172ms self 0.172ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardLets total 0.874ms self 0.874ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardRelationalLets total 0.192ms self 0.192ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/PruneDeadFields total 0.935ms self 0.935ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/Verify total 0.031ms self 0.031ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/InitializeCompiledFunction total 19.230ms self 19.230ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/RunCompiledFunction total 2.825ms self 2.825ms children 0.000ms %children 0.00% 2021-04-12 16:02:24 root: INFO: timing SparkBackend.executeJSON/convertRegionValueToAnnotation total 28.528ms self 28.528ms children 0.000ms %children 0.00% 2021-04-12 16:02:25 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:25 MemoryStore: INFO: Block broadcast_2 stored as values in memory (estimated size 402.2 KB, free 21.7 GB) 2021-04-12 16:02:25 MemoryStore: INFO: Block broadcast_2_piece0 stored as bytes in memory (estimated size 28.5 KB, free 21.7 GB) 2021-04-12 16:02:25 BlockManagerInfo: INFO: Added broadcast_2_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 28.5 KB, free: 21.7 GB) 2021-04-12 16:02:25 SparkContext: INFO: Created broadcast 2 from broadcast at SparkBackend.scala:259 2021-04-12 16:02:26 MemoryStore: INFO: Block broadcast_3 stored as values in memory (estimated size 555.3 KB, free 21.7 GB) 2021-04-12 16:02:26 MemoryStore: INFO: Block broadcast_3_piece0 stored as bytes in memory (estimated size 40.8 KB, free 21.7 GB) 2021-04-12 16:02:26 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 40.8 KB, free: 21.7 GB) 2021-04-12 16:02:26 SparkContext: INFO: Created broadcast 3 from broadcast at SparkBackend.scala:259 2021-04-12 16:02:26 SparkContext: INFO: Starting job: collect at LoadVCF.scala:1915 2021-04-12 16:02:26 DAGScheduler: INFO: Got job 0 (collect at LoadVCF.scala:1915) with 100 output partitions 2021-04-12 16:02:26 DAGScheduler: INFO: Final stage: ResultStage 0 (collect at LoadVCF.scala:1915) 2021-04-12 16:02:26 DAGScheduler: INFO: Parents of final stage: List() 2021-04-12 16:02:26 DAGScheduler: INFO: Missing parents: List() 2021-04-12 16:02:26 DAGScheduler: INFO: Submitting ResultStage 0 (MapPartitionsRDD[1] at map at LoadVCF.scala:1894), which has no missing parents 2021-04-12 16:02:26 MemoryStore: INFO: Block broadcast_4 stored as values in memory (estimated size 11.6 KB, free 21.7 GB) 2021-04-12 16:02:26 MemoryStore: INFO: Block broadcast_4_piece0 stored as bytes in memory (estimated size 6.0 KB, free 21.7 GB) 2021-04-12 16:02:26 BlockManagerInfo: INFO: Added broadcast_4_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:02:26 SparkContext: INFO: Created broadcast 4 from broadcast at DAGScheduler.scala:1163 2021-04-12 16:02:26 DAGScheduler: INFO: Submitting 100 missing tasks from ResultStage 0 (MapPartitionsRDD[1] at map at LoadVCF.scala:1894) (first 15 tasks are for partitions Vector(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)) 2021-04-12 16:02:26 YarnScheduler: INFO: Adding task set 0.0 with 100 tasks 2021-04-12 16:02:26 FairSchedulableBuilder: INFO: Added task set TaskSet_0.0 tasks to pool default 2021-04-12 16:02:26 TaskSetManager: INFO: Starting task 0.0 in stage 0.0 (TID 0, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 0, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:26 TaskSetManager: INFO: Starting task 1.0 in stage 0.0 (TID 1, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 1, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:26 TaskSetManager: INFO: Starting task 2.0 in stage 0.0 (TID 2, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 2, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:26 TaskSetManager: INFO: Starting task 3.0 in stage 0.0 (TID 3, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:26 TaskSetManager: INFO: Starting task 4.0 in stage 0.0 (TID 4, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 4, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:26 TaskSetManager: INFO: Starting task 5.0 in stage 0.0 (TID 5, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:26 TaskSetManager: INFO: Starting task 6.0 in stage 0.0 (TID 6, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 6, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:26 TaskSetManager: INFO: Starting task 7.0 in stage 0.0 (TID 7, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:27 BlockManagerInfo: INFO: Added broadcast_4_piece0 in memory on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:27 BlockManagerInfo: INFO: Added broadcast_4_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:27 ExecutorAllocationManager: INFO: Requesting 1 new executor because tasks are backlogged (new desired total will be 3) 2021-04-12 16:02:27 BlockManagerInfo: INFO: Added broadcast_2_piece0 in memory on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 (size: 28.5 KB, free: 5.6 GB) 2021-04-12 16:02:27 BlockManagerInfo: INFO: Added broadcast_2_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 (size: 28.5 KB, free: 5.6 GB) 2021-04-12 16:02:28 ExecutorAllocationManager: INFO: Requesting 2 new executors because tasks are backlogged (new desired total will be 5) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 8.0 in stage 0.0 (TID 8, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 8, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 9.0 in stage 0.0 (TID 9, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 9, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 10.0 in stage 0.0 (TID 10, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 10, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 11.0 in stage 0.0 (TID 11, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 11, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 3.0 in stage 0.0 (TID 3) in 2449 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (1/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 1.0 in stage 0.0 (TID 1) in 2469 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (2/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 7.0 in stage 0.0 (TID 7) in 2437 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (3/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 5.0 in stage 0.0 (TID 5) in 2449 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (4/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 12.0 in stage 0.0 (TID 12, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 12, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 10.0 in stage 0.0 (TID 10) in 261 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (5/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 13.0 in stage 0.0 (TID 13, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 13, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 8.0 in stage 0.0 (TID 8) in 324 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (6/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 14.0 in stage 0.0 (TID 14, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 14, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 9.0 in stage 0.0 (TID 9) in 350 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (7/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 15.0 in stage 0.0 (TID 15, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 15, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 11.0 in stage 0.0 (TID 11) in 354 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (8/100) 2021-04-12 16:02:29 ExecutorAllocationManager: INFO: Requesting 4 new executors because tasks are backlogged (new desired total will be 9) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 16.0 in stage 0.0 (TID 16, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 16, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 12.0 in stage 0.0 (TID 12) in 306 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (9/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 17.0 in stage 0.0 (TID 17, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 17, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 14.0 in stage 0.0 (TID 14) in 232 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (10/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 18.0 in stage 0.0 (TID 18, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 18, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 13.0 in stage 0.0 (TID 13) in 306 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (11/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 19.0 in stage 0.0 (TID 19, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 19, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 15.0 in stage 0.0 (TID 15) in 286 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (12/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 20.0 in stage 0.0 (TID 20, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 20, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 6.0 in stage 0.0 (TID 6) in 3132 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (13/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 21.0 in stage 0.0 (TID 21, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 21, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 2.0 in stage 0.0 (TID 2) in 3155 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (14/100) 2021-04-12 16:02:29 TaskSetManager: INFO: Starting task 22.0 in stage 0.0 (TID 22, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 22, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:29 TaskSetManager: INFO: Finished task 0.0 in stage 0.0 (TID 0) in 3323 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (15/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 23.0 in stage 0.0 (TID 23, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 23, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 4.0 in stage 0.0 (TID 4) in 3153 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (16/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 24.0 in stage 0.0 (TID 24, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 24, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 18.0 in stage 0.0 (TID 18) in 205 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (17/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 25.0 in stage 0.0 (TID 25, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 25, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 17.0 in stage 0.0 (TID 17) in 275 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (18/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 26.0 in stage 0.0 (TID 26, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 26, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 19.0 in stage 0.0 (TID 19) in 240 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (19/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 27.0 in stage 0.0 (TID 27, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 27, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 16.0 in stage 0.0 (TID 16) in 328 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (20/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 28.0 in stage 0.0 (TID 28, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 28, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 27.0 in stage 0.0 (TID 27) in 159 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (21/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 29.0 in stage 0.0 (TID 29, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 29, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 21.0 in stage 0.0 (TID 21) in 362 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (22/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 30.0 in stage 0.0 (TID 30, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 30, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 20.0 in stage 0.0 (TID 20) in 372 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (23/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 31.0 in stage 0.0 (TID 31, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 31, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 23.0 in stage 0.0 (TID 23) in 376 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (24/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 32.0 in stage 0.0 (TID 32, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 32, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 22.0 in stage 0.0 (TID 22) in 384 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (25/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 33.0 in stage 0.0 (TID 33, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 33, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 25.0 in stage 0.0 (TID 25) in 284 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (26/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 34.0 in stage 0.0 (TID 34, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 34, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 24.0 in stage 0.0 (TID 24) in 432 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (27/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 35.0 in stage 0.0 (TID 35, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 35, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 28.0 in stage 0.0 (TID 28) in 228 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (28/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 36.0 in stage 0.0 (TID 36, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 36, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 31.0 in stage 0.0 (TID 31) in 192 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (29/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 37.0 in stage 0.0 (TID 37, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 37, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 26.0 in stage 0.0 (TID 26) in 411 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (30/100) 2021-04-12 16:02:30 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.10:51788) with ID 3 2021-04-12 16:02:30 ExecutorAllocationManager: INFO: New executor 3 has registered (new total is 3) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 38.0 in stage 0.0 (TID 38, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 38, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 39.0 in stage 0.0 (TID 39, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 39, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 40.0 in stage 0.0 (TID 40, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 40, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 41.0 in stage 0.0 (TID 41, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 41, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 42.0 in stage 0.0 (TID 42, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 42, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 33.0 in stage 0.0 (TID 33) in 256 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (31/100) 2021-04-12 16:02:30 ExecutorAllocationManager: INFO: Requesting 8 new executors because tasks are backlogged (new desired total will be 17) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 43.0 in stage 0.0 (TID 43, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 43, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 32.0 in stage 0.0 (TID 32) in 305 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (32/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 44.0 in stage 0.0 (TID 44, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 44, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 30.0 in stage 0.0 (TID 30) in 344 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (33/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 45.0 in stage 0.0 (TID 45, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 45, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 35.0 in stage 0.0 (TID 35) in 179 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (34/100) 2021-04-12 16:02:30 BlockManagerMasterEndpoint: INFO: Registering block manager berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 with 5.6 GB RAM, BlockManagerId(3, berylc-w-0.us-central1-b.c.human-genetics-001.internal, 34853, None) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 46.0 in stage 0.0 (TID 46, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 46, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 34.0 in stage 0.0 (TID 34) in 207 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (35/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 47.0 in stage 0.0 (TID 47, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 47, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 29.0 in stage 0.0 (TID 29) in 396 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (36/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 48.0 in stage 0.0 (TID 48, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 48, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 36.0 in stage 0.0 (TID 36) in 296 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (37/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 49.0 in stage 0.0 (TID 49, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 49, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 37.0 in stage 0.0 (TID 37) in 298 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (38/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 50.0 in stage 0.0 (TID 50, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 50, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 42.0 in stage 0.0 (TID 42) in 262 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (39/100) 2021-04-12 16:02:30 TaskSetManager: INFO: Starting task 51.0 in stage 0.0 (TID 51, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 51, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:30 TaskSetManager: INFO: Finished task 44.0 in stage 0.0 (TID 44) in 291 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (40/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 52.0 in stage 0.0 (TID 52, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 52, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 45.0 in stage 0.0 (TID 45) in 285 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (41/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 53.0 in stage 0.0 (TID 53, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 53, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 43.0 in stage 0.0 (TID 43) in 328 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (42/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 54.0 in stage 0.0 (TID 54, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 54, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 46.0 in stage 0.0 (TID 46) in 279 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (43/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 55.0 in stage 0.0 (TID 55, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 55, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 47.0 in stage 0.0 (TID 47) in 301 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (44/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 56.0 in stage 0.0 (TID 56, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 56, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 49.0 in stage 0.0 (TID 49) in 294 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (45/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 57.0 in stage 0.0 (TID 57, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 57, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 51.0 in stage 0.0 (TID 51) in 181 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (46/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 58.0 in stage 0.0 (TID 58, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 58, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 50.0 in stage 0.0 (TID 50) in 267 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (47/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 59.0 in stage 0.0 (TID 59, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 59, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 55.0 in stage 0.0 (TID 55) in 217 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (48/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 60.0 in stage 0.0 (TID 60, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 60, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 48.0 in stage 0.0 (TID 48) in 431 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (49/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 61.0 in stage 0.0 (TID 61, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 61, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 53.0 in stage 0.0 (TID 53) in 305 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (50/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 62.0 in stage 0.0 (TID 62, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 62, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 54.0 in stage 0.0 (TID 54) in 326 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (51/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 63.0 in stage 0.0 (TID 63, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 63, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 52.0 in stage 0.0 (TID 52) in 372 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (52/100) 2021-04-12 16:02:31 BlockManagerInfo: INFO: Added broadcast_4_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 64.0 in stage 0.0 (TID 64, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 64, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 56.0 in stage 0.0 (TID 56) in 242 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (53/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 65.0 in stage 0.0 (TID 65, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 65, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 58.0 in stage 0.0 (TID 58) in 234 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (54/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 66.0 in stage 0.0 (TID 66, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 66, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 60.0 in stage 0.0 (TID 60) in 243 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (55/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 67.0 in stage 0.0 (TID 67, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 67, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 57.0 in stage 0.0 (TID 57) in 407 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (56/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 68.0 in stage 0.0 (TID 68, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 68, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 62.0 in stage 0.0 (TID 62) in 283 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (57/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 69.0 in stage 0.0 (TID 69, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 69, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 63.0 in stage 0.0 (TID 63) in 261 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (58/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 70.0 in stage 0.0 (TID 70, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 70, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 71.0 in stage 0.0 (TID 71, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 71, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 64.0 in stage 0.0 (TID 64) in 272 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (59/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 72.0 in stage 0.0 (TID 72, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 72, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 59.0 in stage 0.0 (TID 59) in 409 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (60/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 61.0 in stage 0.0 (TID 61) in 357 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (61/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 73.0 in stage 0.0 (TID 73, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 73, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 65.0 in stage 0.0 (TID 65) in 260 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (62/100) 2021-04-12 16:02:31 BlockManagerInfo: INFO: Added broadcast_2_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 (size: 28.5 KB, free: 5.6 GB) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 74.0 in stage 0.0 (TID 74, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 74, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 66.0 in stage 0.0 (TID 66) in 301 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (63/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 75.0 in stage 0.0 (TID 75, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 75, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 69.0 in stage 0.0 (TID 69) in 251 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (64/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 76.0 in stage 0.0 (TID 76, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 76, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 67.0 in stage 0.0 (TID 67) in 336 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (65/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 77.0 in stage 0.0 (TID 77, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 77, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 68.0 in stage 0.0 (TID 68) in 323 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (66/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 78.0 in stage 0.0 (TID 78, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 78, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 71.0 in stage 0.0 (TID 71) in 278 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (67/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 79.0 in stage 0.0 (TID 79, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 79, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 70.0 in stage 0.0 (TID 70) in 305 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (68/100) 2021-04-12 16:02:31 TaskSetManager: INFO: Starting task 80.0 in stage 0.0 (TID 80, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 80, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:31 TaskSetManager: INFO: Finished task 72.0 in stage 0.0 (TID 72) in 316 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (69/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 81.0 in stage 0.0 (TID 81, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 81, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 73.0 in stage 0.0 (TID 73) in 344 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (70/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 82.0 in stage 0.0 (TID 82, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 82, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 77.0 in stage 0.0 (TID 77) in 167 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (71/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 83.0 in stage 0.0 (TID 83, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 83, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 75.0 in stage 0.0 (TID 75) in 299 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (72/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 84.0 in stage 0.0 (TID 84, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 84, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 78.0 in stage 0.0 (TID 78) in 246 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (73/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 85.0 in stage 0.0 (TID 85, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 85, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 74.0 in stage 0.0 (TID 74) in 370 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (74/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 86.0 in stage 0.0 (TID 86, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 86, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 79.0 in stage 0.0 (TID 79) in 243 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (75/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 87.0 in stage 0.0 (TID 87, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 87, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 81.0 in stage 0.0 (TID 81) in 234 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (76/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 88.0 in stage 0.0 (TID 88, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 88, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 76.0 in stage 0.0 (TID 76) in 348 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (77/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 89.0 in stage 0.0 (TID 89, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 89, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 80.0 in stage 0.0 (TID 80) in 277 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (78/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Marking task 38 in stage 0.0 (on berylc-w-0.us-central1-b.c.human-genetics-001.internal) as speculatable because it ran more than 452 ms 2021-04-12 16:02:32 TaskSetManager: INFO: Marking task 39 in stage 0.0 (on berylc-w-0.us-central1-b.c.human-genetics-001.internal) as speculatable because it ran more than 452 ms 2021-04-12 16:02:32 TaskSetManager: INFO: Marking task 40 in stage 0.0 (on berylc-w-0.us-central1-b.c.human-genetics-001.internal) as speculatable because it ran more than 452 ms 2021-04-12 16:02:32 TaskSetManager: INFO: Marking task 41 in stage 0.0 (on berylc-w-0.us-central1-b.c.human-genetics-001.internal) as speculatable because it ran more than 452 ms 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 90.0 in stage 0.0 (TID 90, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 90, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 83.0 in stage 0.0 (TID 83) in 147 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (79/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 91.0 in stage 0.0 (TID 91, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 91, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 82.0 in stage 0.0 (TID 82) in 246 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (80/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 92.0 in stage 0.0 (TID 92, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 92, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 85.0 in stage 0.0 (TID 85) in 238 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (81/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 93.0 in stage 0.0 (TID 93, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 93, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 84.0 in stage 0.0 (TID 84) in 276 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (82/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 94.0 in stage 0.0 (TID 94, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 94, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 86.0 in stage 0.0 (TID 86) in 272 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (83/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 95.0 in stage 0.0 (TID 95, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 95, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 90.0 in stage 0.0 (TID 90) in 173 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (84/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 96.0 in stage 0.0 (TID 96, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 96, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 89.0 in stage 0.0 (TID 89) in 284 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (85/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 97.0 in stage 0.0 (TID 97, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 97, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 87.0 in stage 0.0 (TID 87) in 325 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (86/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 98.0 in stage 0.0 (TID 98, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 98, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 88.0 in stage 0.0 (TID 88) in 323 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (87/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 99.0 in stage 0.0 (TID 99, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 99, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 93.0 in stage 0.0 (TID 93) in 179 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (88/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 38.1 in stage 0.0 (TID 100, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 38, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 91.0 in stage 0.0 (TID 91) in 305 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (89/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 96.0 in stage 0.0 (TID 96) in 166 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (90/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 92.0 in stage 0.0 (TID 92) in 288 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (91/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 39.1 in stage 0.0 (TID 101, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 39, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 97.0 in stage 0.0 (TID 97) in 176 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (92/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 40.1 in stage 0.0 (TID 102, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 40, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 95.0 in stage 0.0 (TID 95) in 307 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (93/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Starting task 41.1 in stage 0.0 (TID 103, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 41, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 94.0 in stage 0.0 (TID 94) in 347 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (94/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 98.0 in stage 0.0 (TID 98) in 336 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (95/100) 2021-04-12 16:02:32 TaskSetManager: INFO: Killing attempt 0 for task 38.0 in stage 0.0 (TID 38) on berylc-w-0.us-central1-b.c.human-genetics-001.internal as the attempt 1 succeeded on berylc-w-1.us-central1-b.c.human-genetics-001.internal 2021-04-12 16:02:32 TaskSetManager: INFO: Finished task 38.1 in stage 0.0 (TID 100) in 350 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (96/100) 2021-04-12 16:02:33 TaskSetManager: INFO: Finished task 99.0 in stage 0.0 (TID 99) in 374 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (97/100) 2021-04-12 16:02:33 TaskSetManager: INFO: Killing attempt 0 for task 40.0 in stage 0.0 (TID 40) on berylc-w-0.us-central1-b.c.human-genetics-001.internal as the attempt 1 succeeded on berylc-w-1.us-central1-b.c.human-genetics-001.internal 2021-04-12 16:02:33 TaskSetManager: INFO: Finished task 40.1 in stage 0.0 (TID 102) in 235 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (98/100) 2021-04-12 16:02:33 TaskSetManager: INFO: Killing attempt 0 for task 39.0 in stage 0.0 (TID 39) on berylc-w-0.us-central1-b.c.human-genetics-001.internal as the attempt 1 succeeded on berylc-w-1.us-central1-b.c.human-genetics-001.internal 2021-04-12 16:02:33 TaskSetManager: INFO: Finished task 39.1 in stage 0.0 (TID 101) in 331 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (99/100) 2021-04-12 16:02:33 TaskSetManager: INFO: Killing attempt 0 for task 41.0 in stage 0.0 (TID 41) on berylc-w-0.us-central1-b.c.human-genetics-001.internal as the attempt 1 succeeded on berylc-w-1.us-central1-b.c.human-genetics-001.internal 2021-04-12 16:02:33 TaskSetManager: INFO: Finished task 41.1 in stage 0.0 (TID 103) in 321 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (100/100) 2021-04-12 16:02:33 DAGScheduler: INFO: ResultStage 0 (collect at LoadVCF.scala:1915) finished in 6.521 s 2021-04-12 16:02:33 DAGScheduler: INFO: Job 0 finished: collect at LoadVCF.scala:1915, took 6.597432 s 2021-04-12 16:02:33 TaskSetManager: WARN: Lost task 40.0 in stage 0.0 (TID 40, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3): TaskKilled (another attempt succeeded) 2021-04-12 16:02:33 TaskSetManager: INFO: Task 40.0 in stage 0.0 (TID 40) failed, but the task will not be re-executed (either because the task failed with a shuffle data fetch failure, so the previous stage needs to be re-run, or because a different copy of the task has already succeeded). 2021-04-12 16:02:33 YarnScheduler: INFO: Removed TaskSet 0.0, whose tasks have all completed, from pool default 2021-04-12 16:02:33 root: INFO: encoder cache miss (0 hits, 2 misses, 0.000) 2021-04-12 16:02:33 TaskSetManager: WARN: Lost task 39.0 in stage 0.0 (TID 39, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3): TaskKilled (another attempt succeeded) 2021-04-12 16:02:33 TaskSetManager: INFO: Task 39.0 in stage 0.0 (TID 39) failed, but the task will not be re-executed (either because the task failed with a shuffle data fetch failure, so the previous stage needs to be re-run, or because a different copy of the task has already succeeded). 2021-04-12 16:02:33 YarnScheduler: INFO: Removed TaskSet 0.0, whose tasks have all completed, from pool default 2021-04-12 16:02:33 TaskSetManager: WARN: Lost task 38.0 in stage 0.0 (TID 38, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3): TaskKilled (another attempt succeeded) 2021-04-12 16:02:33 TaskSetManager: INFO: Task 38.0 in stage 0.0 (TID 38) failed, but the task will not be re-executed (either because the task failed with a shuffle data fetch failure, so the previous stage needs to be re-run, or because a different copy of the task has already succeeded). 2021-04-12 16:02:33 YarnScheduler: INFO: Removed TaskSet 0.0, whose tasks have all completed, from pool default 2021-04-12 16:02:33 TaskSetManager: WARN: Lost task 41.0 in stage 0.0 (TID 41, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3): TaskKilled (another attempt succeeded) 2021-04-12 16:02:33 TaskSetManager: INFO: Task 41.0 in stage 0.0 (TID 41) failed, but the task will not be re-executed (either because the task failed with a shuffle data fetch failure, so the previous stage needs to be re-run, or because a different copy of the task has already succeeded). 2021-04-12 16:02:33 YarnScheduler: INFO: Removed TaskSet 0.0, whose tasks have all completed, from pool default 2021-04-12 16:02:33 root: INFO: instruction count: 3: __C34etypeEncode. 2021-04-12 16:02:33 root: INFO: instruction count: 5: __C34etypeEncode.apply 2021-04-12 16:02:33 root: INFO: instruction count: 13: __C34etypeEncode.__m35ENCODE_r_tuple_of_r_array_of_r_tuple_of_r_stringENDEND_TO_r_struct_of_r_array_of_r_struct_of_r_binaryENDEND 2021-04-12 16:02:33 root: INFO: instruction count: 45: __C34etypeEncode.__m36ENCODE_r_array_of_r_tuple_of_r_stringEND_TO_r_array_of_r_struct_of_r_binaryEND 2021-04-12 16:02:33 root: INFO: instruction count: 13: __C34etypeEncode.__m37ENCODE_r_tuple_of_r_stringEND_TO_r_struct_of_r_binaryEND 2021-04-12 16:02:33 root: INFO: instruction count: 18: __C34etypeEncode.__m38ENCODE_r_string_TO_r_binary 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:33 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: encoder cache hit 2021-04-12 16:02:34 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:34 root: INFO: timing SparkBackend.pyImportVCFs total 8.497s self 8.497s children 0.000ms %children 0.00% 2021-04-12 16:02:34 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:34 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:34 root: INFO: timing SparkBackend.parse_value_ir total 52.780ms self 52.780ms children 0.000ms %children 0.00% 2021-04-12 16:02:35 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:35 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:35 root: INFO: timing SparkBackend.parse_value_ir total 14.756ms self 14.756ms children 0.000ms %children 0.00% 2021-04-12 16:02:35 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:35 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:35 root: INFO: timing SparkBackend.parse_value_ir total 47.683ms self 47.683ms children 0.000ms %children 0.00% 2021-04-12 16:02:35 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:35 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:35 root: INFO: timing SparkBackend.parse_value_ir total 51.031ms self 51.031ms children 0.000ms %children 0.00% 2021-04-12 16:02:35 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:35 root: INFO: starting execution of query hail_query_2 of initial size 15 2021-04-12 16:02:35 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 15: (ToArray (StreamMap __uid_49 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __uid_49)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __uid_49)))) (Apply includesStart () Boolean (Ref __uid_49)) (Apply includesEnd () Boolean (Ref __uid_49))))) 2021-04-12 16:02:35 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 15: (ToArray (StreamMap __iruid_148 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_148)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_148)))) (Apply includesStart () Boolean (Ref __iruid_148)) (Apply includesEnd () Boolean (Ref __iruid_148))))) 2021-04-12 16:02:35 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 15: (ToArray (StreamMap __iruid_148 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_148)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_148)))) (Apply includesStart () Boolean (Ref __iruid_148)) (Apply includesEnd () Boolean (Ref __iruid_148))))) 2021-04-12 16:02:35 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 15: (ToArray (StreamMap __iruid_151 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_151)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_151)))) (Apply includesStart () Boolean (Ref __iruid_151)) (Apply includesEnd () Boolean (Ref __iruid_151))))) 2021-04-12 16:02:35 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 15: (ToArray (StreamMap __iruid_151 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_151)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_151)))) (Apply includesStart () Boolean (Ref __iruid_151)) (Apply includesEnd () Boolean (Ref __iruid_151))))) 2021-04-12 16:02:35 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 15: (ToArray (StreamMap __iruid_154 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_154)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_154)))) (Apply includesStart () Boolean (Ref __iruid_154)) (Apply includesEnd () Boolean (Ref __iruid_154))))) 2021-04-12 16:02:35 root: INFO: RegionPool: REPORT_THRESHOLD: 289.6K allocated (128.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:35 root: INFO: finished execution of query hail_query_2 2021-04-12 16:02:35 root: INFO: RegionPool: FREE: 417.6K allocated (256.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:35 root: INFO: timing SparkBackend.executeJSON total 66.734ms self 21.282ms children 45.452ms %children 68.11% 2021-04-12 16:02:35 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR total 10.110ms self 0.016ms children 10.094ms %children 99.84% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.015ms self 0.015ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation total 10.061ms self 2.775ms children 7.286ms %children 72.42% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize total 7.286ms self 0.086ms children 7.200ms %children 98.81% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.234ms self 0.234ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.105ms self 0.105ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.179ms self 0.179ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 1.218ms self 1.218ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.089ms self 0.089ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.909ms self 0.909ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.437ms self 0.437ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.076ms self 0.076ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.141ms self 0.141ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 1.008ms self 1.008ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.079ms self 0.079ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.725ms self 0.725ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.338ms self 0.338ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.091ms self 0.091ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.190ms self 0.190ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.683ms self 0.683ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.130ms self 0.130ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.569ms self 0.569ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.018ms self 0.018ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable total 0.106ms self 0.008ms children 0.098ms %children 92.38% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.011ms self 0.011ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/LoweringTransformation total 0.059ms self 0.059ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.027ms self 0.027ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable total 8.136ms self 0.011ms children 8.125ms %children 99.86% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.011ms self 0.011ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation total 8.097ms self 2.304ms children 5.793ms %children 71.55% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize total 5.793ms self 0.081ms children 5.712ms %children 98.60% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.181ms self 0.181ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.088ms self 0.088ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.134ms self 0.134ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.729ms self 0.729ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.088ms self 0.088ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.683ms self 0.683ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.407ms self 0.407ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.076ms self 0.076ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.128ms self 0.128ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.859ms self 0.859ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.074ms self 0.074ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.544ms self 0.544ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.333ms self 0.333ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.067ms self 0.067ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.112ms self 0.112ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.630ms self 0.630ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.070ms self 0.070ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.508ms self 0.508ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.017ms self 0.017ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable total 0.109ms self 0.007ms children 0.102ms %children 93.14% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.026ms self 0.026ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/LoweringTransformation total 0.049ms self 0.049ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.027ms self 0.027ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable total 8.327ms self 0.012ms children 8.315ms %children 99.86% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.010ms self 0.010ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation total 8.287ms self 2.192ms children 6.096ms %children 73.55% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize total 6.096ms self 0.145ms children 5.951ms %children 97.62% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.161ms self 0.161ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.087ms self 0.087ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.135ms self 0.135ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.793ms self 0.793ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.071ms self 0.071ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.647ms self 0.647ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.452ms self 0.452ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.073ms self 0.073ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.114ms self 0.114ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.716ms self 0.716ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.086ms self 0.086ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.535ms self 0.535ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.381ms self 0.381ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.071ms self 0.071ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.111ms self 0.111ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.825ms self 0.825ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.063ms self 0.063ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.629ms self 0.629ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.018ms self 0.018ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/Compile total 5.776ms self 5.776ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/InitializeCompiledFunction total 1.622ms self 1.622ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/RunCompiledFunction total 1.797ms self 1.797ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: timing SparkBackend.executeJSON/convertRegionValueToAnnotation total 9.469ms self 9.469ms children 0.000ms %children 0.00% 2021-04-12 16:02:36 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:37 MemoryStore: INFO: Block broadcast_5 stored as values in memory (estimated size 555.3 KB, free 21.7 GB) 2021-04-12 16:02:37 MemoryStore: INFO: Block broadcast_5_piece0 stored as bytes in memory (estimated size 40.8 KB, free 21.7 GB) 2021-04-12 16:02:37 BlockManagerInfo: INFO: Added broadcast_5_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 40.8 KB, free: 21.7 GB) 2021-04-12 16:02:37 SparkContext: INFO: Created broadcast 5 from broadcast at SparkBackend.scala:259 2021-04-12 16:02:37 SparkContext: INFO: Starting job: collect at LoadVCF.scala:1915 2021-04-12 16:02:37 DAGScheduler: INFO: Got job 1 (collect at LoadVCF.scala:1915) with 100 output partitions 2021-04-12 16:02:37 DAGScheduler: INFO: Final stage: ResultStage 1 (collect at LoadVCF.scala:1915) 2021-04-12 16:02:37 DAGScheduler: INFO: Parents of final stage: List() 2021-04-12 16:02:37 DAGScheduler: INFO: Missing parents: List() 2021-04-12 16:02:37 DAGScheduler: INFO: Submitting ResultStage 1 (MapPartitionsRDD[403] at map at LoadVCF.scala:1894), which has no missing parents 2021-04-12 16:02:37 MemoryStore: INFO: Block broadcast_6 stored as values in memory (estimated size 11.6 KB, free 21.7 GB) 2021-04-12 16:02:37 MemoryStore: INFO: Block broadcast_6_piece0 stored as bytes in memory (estimated size 6.0 KB, free 21.7 GB) 2021-04-12 16:02:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:02:37 SparkContext: INFO: Created broadcast 6 from broadcast at DAGScheduler.scala:1163 2021-04-12 16:02:37 DAGScheduler: INFO: Submitting 100 missing tasks from ResultStage 1 (MapPartitionsRDD[403] at map at LoadVCF.scala:1894) (first 15 tasks are for partitions Vector(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)) 2021-04-12 16:02:37 YarnScheduler: INFO: Adding task set 1.0 with 100 tasks 2021-04-12 16:02:37 FairSchedulableBuilder: INFO: Added task set TaskSet_1.0 tasks to pool default 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 0.0 in stage 1.0 (TID 104, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 0, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 1.0 in stage 1.0 (TID 105, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 1, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 2.0 in stage 1.0 (TID 106, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 2, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 3.0 in stage 1.0 (TID 107, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 4.0 in stage 1.0 (TID 108, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 4, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 5.0 in stage 1.0 (TID 109, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 5, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 6.0 in stage 1.0 (TID 110, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 7.0 in stage 1.0 (TID 111, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 7, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 8.0 in stage 1.0 (TID 112, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 8, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 9.0 in stage 1.0 (TID 113, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 9, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 10.0 in stage 1.0 (TID 114, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 10, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 11.0 in stage 1.0 (TID 115, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 11, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 ExecutorAllocationManager: INFO: Requesting 3 new executors because tasks are backlogged (new desired total will be 4) 2021-04-12 16:02:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 12.0 in stage 1.0 (TID 116, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 12, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 0.0 in stage 1.0 (TID 104) in 181 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (1/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 13.0 in stage 1.0 (TID 117, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 13, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 1.0 in stage 1.0 (TID 105) in 266 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (2/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 14.0 in stage 1.0 (TID 118, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 14, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 3.0 in stage 1.0 (TID 107) in 265 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (3/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 15.0 in stage 1.0 (TID 119, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 15, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 6.0 in stage 1.0 (TID 110) in 268 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (4/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 16.0 in stage 1.0 (TID 120, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 16, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 9.0 in stage 1.0 (TID 113) in 264 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (5/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 17.0 in stage 1.0 (TID 121, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 17, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 7.0 in stage 1.0 (TID 111) in 273 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (6/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 18.0 in stage 1.0 (TID 122, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 18, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 10.0 in stage 1.0 (TID 114) in 305 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (7/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 19.0 in stage 1.0 (TID 123, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 19, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 12.0 in stage 1.0 (TID 116) in 216 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (8/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 20.0 in stage 1.0 (TID 124, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 20, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 17.0 in stage 1.0 (TID 121) in 169 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (9/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 21.0 in stage 1.0 (TID 125, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 21, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 8.0 in stage 1.0 (TID 112) in 507 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (10/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 22.0 in stage 1.0 (TID 126, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 22, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 11.0 in stage 1.0 (TID 115) in 503 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (11/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 23.0 in stage 1.0 (TID 127, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 23, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 2.0 in stage 1.0 (TID 106) in 528 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (12/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 24.0 in stage 1.0 (TID 128, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 24, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 5.0 in stage 1.0 (TID 109) in 525 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (13/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 25.0 in stage 1.0 (TID 129, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 25, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 13.0 in stage 1.0 (TID 117) in 274 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (14/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 26.0 in stage 1.0 (TID 130, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 26, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 14.0 in stage 1.0 (TID 118) in 286 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (15/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 27.0 in stage 1.0 (TID 131, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 27, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 15.0 in stage 1.0 (TID 119) in 297 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (16/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 28.0 in stage 1.0 (TID 132, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 28, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 16.0 in stage 1.0 (TID 120) in 328 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (17/100) 2021-04-12 16:02:37 TaskSetManager: INFO: Starting task 29.0 in stage 1.0 (TID 133, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 29, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:37 TaskSetManager: INFO: Finished task 18.0 in stage 1.0 (TID 122) in 324 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (18/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 30.0 in stage 1.0 (TID 134, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 30, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 19.0 in stage 1.0 (TID 123) in 295 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (19/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 31.0 in stage 1.0 (TID 135, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 31, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 20.0 in stage 1.0 (TID 124) in 288 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (20/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 32.0 in stage 1.0 (TID 136, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 32, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 26.0 in stage 1.0 (TID 130) in 234 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (21/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 33.0 in stage 1.0 (TID 137, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 33, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 25.0 in stage 1.0 (TID 129) in 263 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (22/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 34.0 in stage 1.0 (TID 138, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 34, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 24.0 in stage 1.0 (TID 128) in 269 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (23/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 35.0 in stage 1.0 (TID 139, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 35, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 23.0 in stage 1.0 (TID 127) in 280 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (24/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 36.0 in stage 1.0 (TID 140, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 36, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 21.0 in stage 1.0 (TID 125) in 322 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (25/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 37.0 in stage 1.0 (TID 141, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 37, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 22.0 in stage 1.0 (TID 126) in 332 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (26/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 38.0 in stage 1.0 (TID 142, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 38, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 29.0 in stage 1.0 (TID 133) in 237 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (27/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 39.0 in stage 1.0 (TID 143, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 39, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 28.0 in stage 1.0 (TID 132) in 277 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (28/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 40.0 in stage 1.0 (TID 144, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 40, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 27.0 in stage 1.0 (TID 131) in 403 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (29/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 41.0 in stage 1.0 (TID 145, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 41, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 30.0 in stage 1.0 (TID 134) in 328 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (30/100) 2021-04-12 16:02:38 ExecutorAllocationManager: INFO: Requesting 1 new executor because tasks are backlogged (new desired total will be 5) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 42.0 in stage 1.0 (TID 146, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 42, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 34.0 in stage 1.0 (TID 138) in 256 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (31/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 43.0 in stage 1.0 (TID 147, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 43, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 33.0 in stage 1.0 (TID 137) in 261 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (32/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 44.0 in stage 1.0 (TID 148, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 44, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 35.0 in stage 1.0 (TID 139) in 258 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (33/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 45.0 in stage 1.0 (TID 149, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 45, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 31.0 in stage 1.0 (TID 135) in 355 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (34/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 46.0 in stage 1.0 (TID 150, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 46, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 38.0 in stage 1.0 (TID 142) in 277 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (35/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 47.0 in stage 1.0 (TID 151, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 47, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 32.0 in stage 1.0 (TID 136) in 358 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (36/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 48.0 in stage 1.0 (TID 152, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 48, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 37.0 in stage 1.0 (TID 141) in 290 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (37/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 49.0 in stage 1.0 (TID 153, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 49, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 41.0 in stage 1.0 (TID 145) in 243 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (38/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 50.0 in stage 1.0 (TID 154, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 50, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 36.0 in stage 1.0 (TID 140) in 423 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (39/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 51.0 in stage 1.0 (TID 155, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 51, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 43.0 in stage 1.0 (TID 147) in 218 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (40/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 52.0 in stage 1.0 (TID 156, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 52, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 40.0 in stage 1.0 (TID 144) in 312 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (41/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 53.0 in stage 1.0 (TID 157, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 53, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 45.0 in stage 1.0 (TID 149) in 214 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (42/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 54.0 in stage 1.0 (TID 158, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 54, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 39.0 in stage 1.0 (TID 143) in 425 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (43/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 55.0 in stage 1.0 (TID 159, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 55, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 42.0 in stage 1.0 (TID 146) in 349 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (44/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 56.0 in stage 1.0 (TID 160, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 56, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 48.0 in stage 1.0 (TID 152) in 282 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (45/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 57.0 in stage 1.0 (TID 161, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 57, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 46.0 in stage 1.0 (TID 150) in 309 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (46/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 58.0 in stage 1.0 (TID 162, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 58, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 47.0 in stage 1.0 (TID 151) in 353 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (47/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 59.0 in stage 1.0 (TID 163, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 59, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 51.0 in stage 1.0 (TID 155) in 247 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (48/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 60.0 in stage 1.0 (TID 164, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 60, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 50.0 in stage 1.0 (TID 154) in 272 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (49/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 61.0 in stage 1.0 (TID 165, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 61, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 44.0 in stage 1.0 (TID 148) in 477 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (50/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 62.0 in stage 1.0 (TID 166, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 62, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 4.0 in stage 1.0 (TID 108) in 1581 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (51/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 63.0 in stage 1.0 (TID 167, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 63, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 54.0 in stage 1.0 (TID 158) in 285 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (52/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 64.0 in stage 1.0 (TID 168, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 64, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 49.0 in stage 1.0 (TID 153) in 344 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (53/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 65.0 in stage 1.0 (TID 169, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 65, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 52.0 in stage 1.0 (TID 156) in 323 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (54/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 66.0 in stage 1.0 (TID 170, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 66, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 53.0 in stage 1.0 (TID 157) in 307 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (55/100) 2021-04-12 16:02:38 TaskSetManager: INFO: Starting task 67.0 in stage 1.0 (TID 171, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 67, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:38 TaskSetManager: INFO: Finished task 56.0 in stage 1.0 (TID 160) in 219 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (56/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 68.0 in stage 1.0 (TID 172, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 68, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 59.0 in stage 1.0 (TID 163) in 159 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (57/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 69.0 in stage 1.0 (TID 173, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 69, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 55.0 in stage 1.0 (TID 159) in 322 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (58/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 70.0 in stage 1.0 (TID 174, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 70, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 62.0 in stage 1.0 (TID 166) in 189 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (59/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 71.0 in stage 1.0 (TID 175, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 71, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 58.0 in stage 1.0 (TID 162) in 313 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (60/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 72.0 in stage 1.0 (TID 176, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 72, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 60.0 in stage 1.0 (TID 164) in 275 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (61/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 73.0 in stage 1.0 (TID 177, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 73, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 57.0 in stage 1.0 (TID 161) in 375 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (62/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 74.0 in stage 1.0 (TID 178, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 74, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 65.0 in stage 1.0 (TID 169) in 270 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (63/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 75.0 in stage 1.0 (TID 179, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 75, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 64.0 in stage 1.0 (TID 168) in 287 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (64/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 76.0 in stage 1.0 (TID 180, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 76, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 66.0 in stage 1.0 (TID 170) in 286 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (65/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 77.0 in stage 1.0 (TID 181, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 77, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 68.0 in stage 1.0 (TID 172) in 233 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (66/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 78.0 in stage 1.0 (TID 182, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 78, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 61.0 in stage 1.0 (TID 165) in 374 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (67/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 79.0 in stage 1.0 (TID 183, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 79, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 67.0 in stage 1.0 (TID 171) in 284 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (68/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 80.0 in stage 1.0 (TID 184, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 80, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 69.0 in stage 1.0 (TID 173) in 212 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (69/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 81.0 in stage 1.0 (TID 185, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 81, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 63.0 in stage 1.0 (TID 167) in 373 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (70/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 82.0 in stage 1.0 (TID 186, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 82, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 73.0 in stage 1.0 (TID 177) in 197 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (71/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 83.0 in stage 1.0 (TID 187, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 83, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 70.0 in stage 1.0 (TID 174) in 237 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (72/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 84.0 in stage 1.0 (TID 188, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 84, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 71.0 in stage 1.0 (TID 175) in 230 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (73/100) 2021-04-12 16:02:39 ExecutorAllocationManager: INFO: Requesting 2 new executors because tasks are backlogged (new desired total will be 7) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 85.0 in stage 1.0 (TID 189, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 85, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 76.0 in stage 1.0 (TID 180) in 206 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (74/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 86.0 in stage 1.0 (TID 190, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 86, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 72.0 in stage 1.0 (TID 176) in 299 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (75/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 87.0 in stage 1.0 (TID 191, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 87, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 79.0 in stage 1.0 (TID 183) in 220 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (76/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 88.0 in stage 1.0 (TID 192, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 88, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 75.0 in stage 1.0 (TID 179) in 270 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (77/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 89.0 in stage 1.0 (TID 193, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 89, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 74.0 in stage 1.0 (TID 178) in 276 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (78/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 90.0 in stage 1.0 (TID 194, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 90, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 78.0 in stage 1.0 (TID 182) in 246 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (79/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 91.0 in stage 1.0 (TID 195, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 91, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 82.0 in stage 1.0 (TID 186) in 152 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (80/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 92.0 in stage 1.0 (TID 196, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 92, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 77.0 in stage 1.0 (TID 181) in 290 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (81/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 93.0 in stage 1.0 (TID 197, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 93, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 83.0 in stage 1.0 (TID 187) in 193 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (82/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 94.0 in stage 1.0 (TID 198, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 94, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 80.0 in stage 1.0 (TID 184) in 285 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (83/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 95.0 in stage 1.0 (TID 199, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 95, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 81.0 in stage 1.0 (TID 185) in 289 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (84/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 96.0 in stage 1.0 (TID 200, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 96, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 85.0 in stage 1.0 (TID 189) in 215 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (85/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 97.0 in stage 1.0 (TID 201, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 97, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 84.0 in stage 1.0 (TID 188) in 303 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (86/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 98.0 in stage 1.0 (TID 202, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 98, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 90.0 in stage 1.0 (TID 194) in 223 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (87/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Starting task 99.0 in stage 1.0 (TID 203, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 99, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 87.0 in stage 1.0 (TID 191) in 239 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (88/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 86.0 in stage 1.0 (TID 190) in 279 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (89/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 88.0 in stage 1.0 (TID 192) in 261 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (90/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 89.0 in stage 1.0 (TID 193) in 259 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (91/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 94.0 in stage 1.0 (TID 198) in 194 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (92/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 91.0 in stage 1.0 (TID 195) in 281 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (93/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 96.0 in stage 1.0 (TID 200) in 181 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (94/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 93.0 in stage 1.0 (TID 197) in 293 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (95/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 95.0 in stage 1.0 (TID 199) in 273 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (96/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 97.0 in stage 1.0 (TID 201) in 195 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (97/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 92.0 in stage 1.0 (TID 196) in 343 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (98/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 99.0 in stage 1.0 (TID 203) in 245 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (99/100) 2021-04-12 16:02:39 TaskSetManager: INFO: Finished task 98.0 in stage 1.0 (TID 202) in 253 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (100/100) 2021-04-12 16:02:39 YarnScheduler: INFO: Removed TaskSet 1.0, whose tasks have all completed, from pool default 2021-04-12 16:02:39 DAGScheduler: INFO: ResultStage 1 (collect at LoadVCF.scala:1915) finished in 2.640 s 2021-04-12 16:02:39 DAGScheduler: INFO: Job 1 finished: collect at LoadVCF.scala:1915, took 2.645333 s 2021-04-12 16:02:39 root: INFO: encoder cache hit 2021-04-12 16:02:39 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: encoder cache hit 2021-04-12 16:02:40 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:40 root: INFO: timing SparkBackend.pyImportVCFs total 3.757s self 3.757s children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 31 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 37 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 47 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 35 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 49 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 33 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 27 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 39 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 50 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 28 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 48 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 40 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 45 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 38 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 43 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 32 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 34 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 36 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 26 2021-04-12 16:02:42 BlockManagerInfo: INFO: Removed broadcast_5_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 40.8 KB, free: 21.7 GB) 2021-04-12 16:02:42 BlockManagerInfo: INFO: Removed broadcast_6_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:02:42 BlockManagerInfo: INFO: Removed broadcast_6_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:42 BlockManagerInfo: INFO: Removed broadcast_6_piece0 on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:42 BlockManagerInfo: INFO: Removed broadcast_6_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 29 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 42 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 44 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 41 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 46 2021-04-12 16:02:42 ContextCleaner: INFO: Cleaned accumulator 30 2021-04-12 16:02:42 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:42 root: INFO: timing SparkBackend.parse_value_ir total 78.653ms self 78.653ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:42 root: INFO: starting execution of query hail_query_3 of initial size 15 2021-04-12 16:02:42 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 15: (ToArray (StreamMap __uid_53 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __uid_53)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __uid_53)))) (Apply includesStart () Boolean (Ref __uid_53)) (Apply includesEnd () Boolean (Ref __uid_53))))) 2021-04-12 16:02:42 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 15: (ToArray (StreamMap __iruid_157 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_157)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_157)))) (Apply includesStart () Boolean (Ref __iruid_157)) (Apply includesEnd () Boolean (Ref __iruid_157))))) 2021-04-12 16:02:42 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 15: (ToArray (StreamMap __iruid_157 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_157)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_157)))) (Apply includesStart () Boolean (Ref __iruid_157)) (Apply includesEnd () Boolean (Ref __iruid_157))))) 2021-04-12 16:02:42 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 15: (ToArray (StreamMap __iruid_160 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_160)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_160)))) (Apply includesStart () Boolean (Ref __iruid_160)) (Apply includesEnd () Boolean (Ref __iruid_160))))) 2021-04-12 16:02:42 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 15: (ToArray (StreamMap __iruid_160 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_160)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_160)))) (Apply includesStart () Boolean (Ref __iruid_160)) (Apply includesEnd () Boolean (Ref __iruid_160))))) 2021-04-12 16:02:42 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 15: (ToArray (StreamMap __iruid_163 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_163)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_163)))) (Apply includesStart () Boolean (Ref __iruid_163)) (Apply includesEnd () Boolean (Ref __iruid_163))))) 2021-04-12 16:02:42 root: INFO: RegionPool: REPORT_THRESHOLD: 289.6K allocated (128.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:42 root: INFO: finished execution of query hail_query_3 2021-04-12 16:02:42 root: INFO: RegionPool: FREE: 417.6K allocated (256.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON total 61.453ms self 12.674ms children 48.780ms %children 79.38% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR total 14.138ms self 0.022ms children 14.117ms %children 99.85% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.024ms self 0.024ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation total 14.061ms self 3.650ms children 10.411ms %children 74.04% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize total 10.411ms self 0.231ms children 10.180ms %children 97.78% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.409ms self 0.409ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.170ms self 0.170ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.234ms self 0.234ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 1.271ms self 1.271ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.511ms self 0.511ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 1.190ms self 1.190ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.595ms self 0.595ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.144ms self 0.144ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.383ms self 0.383ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 1.160ms self 1.160ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.104ms self 0.104ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 1.013ms self 1.013ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.530ms self 0.530ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.107ms self 0.107ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.209ms self 0.209ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 1.185ms self 1.185ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.120ms self 0.120ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.846ms self 0.846ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.031ms self 0.031ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable total 0.147ms self 0.014ms children 0.133ms %children 90.31% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.012ms self 0.012ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/LoweringTransformation total 0.058ms self 0.058ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.064ms self 0.064ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable total 12.274ms self 0.014ms children 12.260ms %children 99.89% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.020ms self 0.020ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation total 12.186ms self 2.535ms children 9.650ms %children 79.20% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize total 9.650ms self 0.137ms children 9.513ms %children 98.58% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.194ms self 0.194ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.145ms self 0.145ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.267ms self 0.267ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 1.143ms self 1.143ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.216ms self 0.216ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 1.289ms self 1.289ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.651ms self 0.651ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.115ms self 0.115ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.185ms self 0.185ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 1.475ms self 1.475ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.122ms self 0.122ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.864ms self 0.864ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.567ms self 0.567ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.103ms self 0.103ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.191ms self 0.191ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 1.099ms self 1.099ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.096ms self 0.096ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.793ms self 0.793ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.055ms self 0.055ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable total 0.106ms self 0.005ms children 0.100ms %children 94.82% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.022ms self 0.022ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/LoweringTransformation total 0.059ms self 0.059ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.020ms self 0.020ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable total 12.742ms self 0.010ms children 12.732ms %children 99.92% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.007ms self 0.007ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation total 12.714ms self 1.369ms children 11.346ms %children 89.24% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize total 11.346ms self 0.088ms children 11.257ms %children 99.22% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.232ms self 0.232ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.110ms self 0.110ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 2.962ms self 2.962ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.918ms self 0.918ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.090ms self 0.090ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 3.273ms self 3.273ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.341ms self 0.341ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.074ms self 0.074ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.147ms self 0.147ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.715ms self 0.715ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.065ms self 0.065ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.538ms self 0.538ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.312ms self 0.312ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.081ms self 0.081ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.142ms self 0.142ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.664ms self 0.664ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.074ms self 0.074ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.518ms self 0.518ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.011ms self 0.011ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/Compile total 4.623ms self 4.623ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/InitializeCompiledFunction total 0.516ms self 0.516ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/RunCompiledFunction total 1.626ms self 1.626ms children 0.000ms %children 0.00% 2021-04-12 16:02:42 root: INFO: timing SparkBackend.executeJSON/convertRegionValueToAnnotation total 2.607ms self 2.607ms children 0.000ms %children 0.00% 2021-04-12 16:02:43 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:43 MemoryStore: INFO: Block broadcast_7 stored as values in memory (estimated size 555.3 KB, free 21.7 GB) 2021-04-12 16:02:43 MemoryStore: INFO: Block broadcast_7_piece0 stored as bytes in memory (estimated size 40.8 KB, free 21.7 GB) 2021-04-12 16:02:43 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 40.8 KB, free: 21.7 GB) 2021-04-12 16:02:43 SparkContext: INFO: Created broadcast 7 from broadcast at SparkBackend.scala:259 2021-04-12 16:02:43 SparkContext: INFO: Starting job: collect at LoadVCF.scala:1915 2021-04-12 16:02:43 DAGScheduler: INFO: Got job 2 (collect at LoadVCF.scala:1915) with 100 output partitions 2021-04-12 16:02:43 DAGScheduler: INFO: Final stage: ResultStage 2 (collect at LoadVCF.scala:1915) 2021-04-12 16:02:43 DAGScheduler: INFO: Parents of final stage: List() 2021-04-12 16:02:43 DAGScheduler: INFO: Missing parents: List() 2021-04-12 16:02:43 DAGScheduler: INFO: Submitting ResultStage 2 (MapPartitionsRDD[805] at map at LoadVCF.scala:1894), which has no missing parents 2021-04-12 16:02:43 MemoryStore: INFO: Block broadcast_8 stored as values in memory (estimated size 11.6 KB, free 21.7 GB) 2021-04-12 16:02:43 MemoryStore: INFO: Block broadcast_8_piece0 stored as bytes in memory (estimated size 6.0 KB, free 21.7 GB) 2021-04-12 16:02:43 BlockManagerInfo: INFO: Added broadcast_8_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:02:43 SparkContext: INFO: Created broadcast 8 from broadcast at DAGScheduler.scala:1163 2021-04-12 16:02:43 DAGScheduler: INFO: Submitting 100 missing tasks from ResultStage 2 (MapPartitionsRDD[805] at map at LoadVCF.scala:1894) (first 15 tasks are for partitions Vector(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)) 2021-04-12 16:02:43 YarnScheduler: INFO: Adding task set 2.0 with 100 tasks 2021-04-12 16:02:43 FairSchedulableBuilder: INFO: Added task set TaskSet_2.0 tasks to pool default 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 0.0 in stage 2.0 (TID 204, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 0, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 1.0 in stage 2.0 (TID 205, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 1, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 2.0 in stage 2.0 (TID 206, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 2, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 3.0 in stage 2.0 (TID 207, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 4.0 in stage 2.0 (TID 208, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 4, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 5.0 in stage 2.0 (TID 209, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 5, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 6.0 in stage 2.0 (TID 210, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 7.0 in stage 2.0 (TID 211, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 7, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 8.0 in stage 2.0 (TID 212, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 8, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 9.0 in stage 2.0 (TID 213, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 9, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 10.0 in stage 2.0 (TID 214, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 10, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 11.0 in stage 2.0 (TID 215, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 11, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 BlockManagerInfo: INFO: Added broadcast_8_piece0 in memory on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:43 BlockManagerInfo: INFO: Added broadcast_8_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:43 BlockManagerInfo: INFO: Added broadcast_8_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 12.0 in stage 2.0 (TID 216, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 12, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 0.0 in stage 2.0 (TID 204) in 121 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (1/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 13.0 in stage 2.0 (TID 217, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 13, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 4.0 in stage 2.0 (TID 208) in 207 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (2/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 14.0 in stage 2.0 (TID 218, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 14, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 9.0 in stage 2.0 (TID 213) in 240 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (3/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 15.0 in stage 2.0 (TID 219, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 15, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 7.0 in stage 2.0 (TID 211) in 248 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (4/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 16.0 in stage 2.0 (TID 220, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 16, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 3.0 in stage 2.0 (TID 207) in 256 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (5/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 17.0 in stage 2.0 (TID 221, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 17, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 10.0 in stage 2.0 (TID 214) in 284 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (6/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 18.0 in stage 2.0 (TID 222, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 18, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 5.0 in stage 2.0 (TID 209) in 293 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (7/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 19.0 in stage 2.0 (TID 223, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 19, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 6.0 in stage 2.0 (TID 210) in 300 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (8/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 20.0 in stage 2.0 (TID 224, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 20, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 8.0 in stage 2.0 (TID 212) in 310 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (9/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 21.0 in stage 2.0 (TID 225, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 21, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 1.0 in stage 2.0 (TID 205) in 327 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (10/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 22.0 in stage 2.0 (TID 226, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 22, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 2.0 in stage 2.0 (TID 206) in 341 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (11/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 23.0 in stage 2.0 (TID 227, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 23, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 11.0 in stage 2.0 (TID 215) in 368 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (12/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 24.0 in stage 2.0 (TID 228, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 24, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 13.0 in stage 2.0 (TID 217) in 178 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (13/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 25.0 in stage 2.0 (TID 229, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 25, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 12.0 in stage 2.0 (TID 216) in 300 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (14/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 26.0 in stage 2.0 (TID 230, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 26, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 15.0 in stage 2.0 (TID 219) in 219 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (15/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 27.0 in stage 2.0 (TID 231, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 27, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 14.0 in stage 2.0 (TID 218) in 263 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (16/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 28.0 in stage 2.0 (TID 232, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 28, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 18.0 in stage 2.0 (TID 222) in 268 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (17/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 29.0 in stage 2.0 (TID 233, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 29, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 22.0 in stage 2.0 (TID 226) in 256 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (18/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 30.0 in stage 2.0 (TID 234, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 30, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 19.0 in stage 2.0 (TID 223) in 295 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (19/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 31.0 in stage 2.0 (TID 235, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 31, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 16.0 in stage 2.0 (TID 220) in 348 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (20/100) 2021-04-12 16:02:43 TaskSetManager: INFO: Starting task 32.0 in stage 2.0 (TID 236, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 32, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:43 TaskSetManager: INFO: Finished task 21.0 in stage 2.0 (TID 225) in 289 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (21/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 33.0 in stage 2.0 (TID 237, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 33, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 23.0 in stage 2.0 (TID 227) in 253 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (22/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 34.0 in stage 2.0 (TID 238, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 34, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 17.0 in stage 2.0 (TID 221) in 352 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (23/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 35.0 in stage 2.0 (TID 239, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 35, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 24.0 in stage 2.0 (TID 228) in 265 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (24/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 36.0 in stage 2.0 (TID 240, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 36, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 25.0 in stage 2.0 (TID 229) in 240 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (25/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 37.0 in stage 2.0 (TID 241, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 37, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 26.0 in stage 2.0 (TID 230) in 186 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (26/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 38.0 in stage 2.0 (TID 242, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 38, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 27.0 in stage 2.0 (TID 231) in 171 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (27/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 39.0 in stage 2.0 (TID 243, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 39, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 20.0 in stage 2.0 (TID 224) in 380 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (28/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 40.0 in stage 2.0 (TID 244, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 40, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 28.0 in stage 2.0 (TID 232) in 235 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (29/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 41.0 in stage 2.0 (TID 245, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 41, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 29.0 in stage 2.0 (TID 233) in 205 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (30/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 42.0 in stage 2.0 (TID 246, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 42, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 30.0 in stage 2.0 (TID 234) in 205 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (31/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 43.0 in stage 2.0 (TID 247, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 43, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 33.0 in stage 2.0 (TID 237) in 201 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (32/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 44.0 in stage 2.0 (TID 248, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 44, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 32.0 in stage 2.0 (TID 236) in 246 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (33/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 45.0 in stage 2.0 (TID 249, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 45, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 31.0 in stage 2.0 (TID 235) in 264 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (34/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 46.0 in stage 2.0 (TID 250, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 46, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 35.0 in stage 2.0 (TID 239) in 250 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (35/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 47.0 in stage 2.0 (TID 251, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 47, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 37.0 in stage 2.0 (TID 241) in 309 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (36/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 48.0 in stage 2.0 (TID 252, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 48, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 38.0 in stage 2.0 (TID 242) in 307 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (37/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 49.0 in stage 2.0 (TID 253, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 49, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 36.0 in stage 2.0 (TID 240) in 344 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (38/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 50.0 in stage 2.0 (TID 254, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 50, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 41.0 in stage 2.0 (TID 245) in 208 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (39/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 51.0 in stage 2.0 (TID 255, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 51, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 39.0 in stage 2.0 (TID 243) in 325 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (40/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 52.0 in stage 2.0 (TID 256, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 52, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 34.0 in stage 2.0 (TID 238) in 396 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (41/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 53.0 in stage 2.0 (TID 257, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 53, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 45.0 in stage 2.0 (TID 249) in 178 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (42/100) 2021-04-12 16:02:44 ExecutorAllocationManager: INFO: Requesting 3 new executors because tasks are backlogged (new desired total will be 4) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 54.0 in stage 2.0 (TID 258, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 54, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 43.0 in stage 2.0 (TID 247) in 240 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (43/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 55.0 in stage 2.0 (TID 259, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 55, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 47.0 in stage 2.0 (TID 251) in 151 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (44/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 56.0 in stage 2.0 (TID 260, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 56, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 44.0 in stage 2.0 (TID 248) in 312 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (45/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 57.0 in stage 2.0 (TID 261, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 57, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 42.0 in stage 2.0 (TID 246) in 398 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (46/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 58.0 in stage 2.0 (TID 262, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 58, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 40.0 in stage 2.0 (TID 244) in 424 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (47/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 59.0 in stage 2.0 (TID 263, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 59, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 54.0 in stage 2.0 (TID 258) in 162 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (48/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 60.0 in stage 2.0 (TID 264, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 60, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 49.0 in stage 2.0 (TID 253) in 236 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (49/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 61.0 in stage 2.0 (TID 265, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 61, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 46.0 in stage 2.0 (TID 250) in 335 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (50/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 62.0 in stage 2.0 (TID 266, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 62, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 50.0 in stage 2.0 (TID 254) in 250 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (51/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 63.0 in stage 2.0 (TID 267, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 63, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 48.0 in stage 2.0 (TID 252) in 277 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (52/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 64.0 in stage 2.0 (TID 268, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 64, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 51.0 in stage 2.0 (TID 255) in 256 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (53/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 65.0 in stage 2.0 (TID 269, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 65, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 52.0 in stage 2.0 (TID 256) in 325 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (54/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 66.0 in stage 2.0 (TID 270, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 66, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 56.0 in stage 2.0 (TID 260) in 257 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (55/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 67.0 in stage 2.0 (TID 271, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 67, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 58.0 in stage 2.0 (TID 262) in 218 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (56/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 68.0 in stage 2.0 (TID 272, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 68, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 59.0 in stage 2.0 (TID 263) in 214 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (57/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 69.0 in stage 2.0 (TID 273, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 69, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 60.0 in stage 2.0 (TID 264) in 213 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (58/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 70.0 in stage 2.0 (TID 274, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 70, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 53.0 in stage 2.0 (TID 257) in 418 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (59/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 71.0 in stage 2.0 (TID 275, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 71, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 61.0 in stage 2.0 (TID 265) in 272 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (60/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 72.0 in stage 2.0 (TID 276, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 72, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 62.0 in stage 2.0 (TID 266) in 257 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (61/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 73.0 in stage 2.0 (TID 277, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 73, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 74.0 in stage 2.0 (TID 278, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 74, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 55.0 in stage 2.0 (TID 259) in 404 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (62/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 57.0 in stage 2.0 (TID 261) in 318 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (63/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 75.0 in stage 2.0 (TID 279, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 75, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 64.0 in stage 2.0 (TID 268) in 248 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (64/100) 2021-04-12 16:02:44 TaskSetManager: INFO: Starting task 76.0 in stage 2.0 (TID 280, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 76, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:44 TaskSetManager: INFO: Finished task 63.0 in stage 2.0 (TID 267) in 309 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (65/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 77.0 in stage 2.0 (TID 281, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 77, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 68.0 in stage 2.0 (TID 272) in 191 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (66/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 78.0 in stage 2.0 (TID 282, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 78, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 65.0 in stage 2.0 (TID 269) in 272 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (67/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 79.0 in stage 2.0 (TID 283, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 79, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 66.0 in stage 2.0 (TID 270) in 215 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (68/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 80.0 in stage 2.0 (TID 284, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 80, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 70.0 in stage 2.0 (TID 274) in 215 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (69/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 81.0 in stage 2.0 (TID 285, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 81, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 67.0 in stage 2.0 (TID 271) in 240 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (70/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 82.0 in stage 2.0 (TID 286, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 82, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 72.0 in stage 2.0 (TID 276) in 190 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (71/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 83.0 in stage 2.0 (TID 287, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 83, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 69.0 in stage 2.0 (TID 273) in 292 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (72/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 84.0 in stage 2.0 (TID 288, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 84, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 74.0 in stage 2.0 (TID 278) in 224 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (73/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 85.0 in stage 2.0 (TID 289, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 85, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 75.0 in stage 2.0 (TID 279) in 223 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (74/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 86.0 in stage 2.0 (TID 290, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 86, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 78.0 in stage 2.0 (TID 282) in 150 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (75/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 87.0 in stage 2.0 (TID 291, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 87, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 76.0 in stage 2.0 (TID 280) in 220 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (76/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 88.0 in stage 2.0 (TID 292, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 88, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 71.0 in stage 2.0 (TID 275) in 299 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (77/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 89.0 in stage 2.0 (TID 293, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 89, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 81.0 in stage 2.0 (TID 285) in 181 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (78/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 90.0 in stage 2.0 (TID 294, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 90, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 79.0 in stage 2.0 (TID 283) in 250 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (79/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 91.0 in stage 2.0 (TID 295, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 91, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 73.0 in stage 2.0 (TID 277) in 376 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (80/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 92.0 in stage 2.0 (TID 296, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 92, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 82.0 in stage 2.0 (TID 286) in 225 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (81/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 93.0 in stage 2.0 (TID 297, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 93, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 85.0 in stage 2.0 (TID 289) in 195 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (82/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 94.0 in stage 2.0 (TID 298, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 94, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 80.0 in stage 2.0 (TID 284) in 267 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (83/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 95.0 in stage 2.0 (TID 299, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 95, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 86.0 in stage 2.0 (TID 290) in 202 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (84/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 96.0 in stage 2.0 (TID 300, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 96, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 77.0 in stage 2.0 (TID 281) in 358 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (85/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 97.0 in stage 2.0 (TID 301, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 97, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 89.0 in stage 2.0 (TID 293) in 150 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (86/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 98.0 in stage 2.0 (TID 302, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 98, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 83.0 in stage 2.0 (TID 287) in 275 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (87/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Starting task 99.0 in stage 2.0 (TID 303, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 99, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 88.0 in stage 2.0 (TID 292) in 209 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (88/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 84.0 in stage 2.0 (TID 288) in 282 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (89/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 87.0 in stage 2.0 (TID 291) in 283 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (90/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 90.0 in stage 2.0 (TID 294) in 291 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (91/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 95.0 in stage 2.0 (TID 299) in 202 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (92/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 91.0 in stage 2.0 (TID 295) in 305 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (93/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 93.0 in stage 2.0 (TID 297) in 274 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (94/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 94.0 in stage 2.0 (TID 298) in 278 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (95/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 98.0 in stage 2.0 (TID 302) in 248 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (96/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 92.0 in stage 2.0 (TID 296) in 335 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (97/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 96.0 in stage 2.0 (TID 300) in 331 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (98/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 97.0 in stage 2.0 (TID 301) in 353 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (99/100) 2021-04-12 16:02:45 TaskSetManager: INFO: Finished task 99.0 in stage 2.0 (TID 303) in 437 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (100/100) 2021-04-12 16:02:45 YarnScheduler: INFO: Removed TaskSet 2.0, whose tasks have all completed, from pool default 2021-04-12 16:02:45 DAGScheduler: INFO: ResultStage 2 (collect at LoadVCF.scala:1915) finished in 2.452 s 2021-04-12 16:02:45 DAGScheduler: INFO: Job 2 finished: collect at LoadVCF.scala:1915, took 2.455900 s 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:45 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 59 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 56 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 54 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 57 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 55 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 60 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 71 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 67 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 75 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 62 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 68 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 51 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 64 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 72 2021-04-12 16:02:46 BlockManagerInfo: INFO: Removed broadcast_8_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 BlockManagerInfo: INFO: Removed broadcast_8_piece0 on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:46 BlockManagerInfo: INFO: Removed broadcast_8_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:46 BlockManagerInfo: INFO: Removed broadcast_8_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 69 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 58 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 66 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 53 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 74 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 73 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 63 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 52 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 70 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 65 2021-04-12 16:02:46 ContextCleaner: INFO: Cleaned accumulator 61 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: encoder cache hit 2021-04-12 16:02:46 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:46 root: INFO: timing SparkBackend.pyImportVCFs total 3.396s self 3.396s children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:47 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:47 root: INFO: timing SparkBackend.parse_value_ir total 39.867ms self 39.867ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:47 root: INFO: starting execution of query hail_query_4 of initial size 15 2021-04-12 16:02:47 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 15: (ToArray (StreamMap __uid_57 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __uid_57)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __uid_57)))) (Apply includesStart () Boolean (Ref __uid_57)) (Apply includesEnd () Boolean (Ref __uid_57))))) 2021-04-12 16:02:47 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 15: (ToArray (StreamMap __iruid_166 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_166)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_166)))) (Apply includesStart () Boolean (Ref __iruid_166)) (Apply includesEnd () Boolean (Ref __iruid_166))))) 2021-04-12 16:02:47 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 15: (ToArray (StreamMap __iruid_166 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_166)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_166)))) (Apply includesStart () Boolean (Ref __iruid_166)) (Apply includesEnd () Boolean (Ref __iruid_166))))) 2021-04-12 16:02:47 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 15: (ToArray (StreamMap __iruid_169 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_169)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_169)))) (Apply includesStart () Boolean (Ref __iruid_169)) (Apply includesEnd () Boolean (Ref __iruid_169))))) 2021-04-12 16:02:47 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 15: (ToArray (StreamMap __iruid_169 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_169)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_169)))) (Apply includesStart () Boolean (Ref __iruid_169)) (Apply includesEnd () Boolean (Ref __iruid_169))))) 2021-04-12 16:02:47 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 15: (ToArray (StreamMap __iruid_172 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_172)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_172)))) (Apply includesStart () Boolean (Ref __iruid_172)) (Apply includesEnd () Boolean (Ref __iruid_172))))) 2021-04-12 16:02:47 root: INFO: RegionPool: REPORT_THRESHOLD: 289.6K allocated (128.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:47 root: INFO: finished execution of query hail_query_4 2021-04-12 16:02:47 root: INFO: RegionPool: FREE: 417.6K allocated (256.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON total 60.399ms self 17.947ms children 42.452ms %children 70.29% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR total 13.512ms self 0.018ms children 13.495ms %children 99.87% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.010ms self 0.010ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation total 13.470ms self 1.998ms children 11.472ms %children 85.17% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize total 11.472ms self 0.106ms children 11.365ms %children 99.07% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.167ms self 0.167ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.097ms self 0.097ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.166ms self 0.166ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.977ms self 0.977ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.063ms self 0.063ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.578ms self 0.578ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.264ms self 0.264ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.071ms self 0.071ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.136ms self 0.136ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 5.150ms self 5.150ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.079ms self 0.079ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.974ms self 0.974ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.467ms self 0.467ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.126ms self 0.126ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.196ms self 0.196ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.935ms self 0.935ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.095ms self 0.095ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.822ms self 0.822ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.015ms self 0.015ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable total 0.119ms self 0.010ms children 0.109ms %children 91.51% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.011ms self 0.011ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/LoweringTransformation total 0.079ms self 0.079ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.019ms self 0.019ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable total 9.086ms self 0.013ms children 9.073ms %children 99.86% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.009ms self 0.009ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation total 9.051ms self 1.558ms children 7.494ms %children 82.79% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize total 7.494ms self 0.111ms children 7.383ms %children 98.52% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.173ms self 0.173ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.119ms self 0.119ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.217ms self 0.217ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.928ms self 0.928ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.083ms self 0.083ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.811ms self 0.811ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.627ms self 0.627ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.114ms self 0.114ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.311ms self 0.311ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.871ms self 0.871ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.113ms self 0.113ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.808ms self 0.808ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.423ms self 0.423ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.105ms self 0.105ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.186ms self 0.186ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.750ms self 0.750ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.091ms self 0.091ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.654ms self 0.654ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.013ms self 0.013ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable total 0.101ms self 0.013ms children 0.088ms %children 86.87% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.020ms self 0.020ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/LoweringTransformation total 0.048ms self 0.048ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.021ms self 0.021ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable total 9.065ms self 0.012ms children 9.053ms %children 99.87% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.006ms self 0.006ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation total 9.028ms self 1.602ms children 7.426ms %children 82.26% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize total 7.426ms self 0.173ms children 7.253ms %children 97.68% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.601ms self 0.601ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.239ms self 0.239ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.216ms self 0.216ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.891ms self 0.891ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.087ms self 0.087ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.783ms self 0.783ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.464ms self 0.464ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.148ms self 0.148ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.222ms self 0.222ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.708ms self 0.708ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.087ms self 0.087ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.687ms self 0.687ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.373ms self 0.373ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.107ms self 0.107ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.182ms self 0.182ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.746ms self 0.746ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.092ms self 0.092ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.621ms self 0.621ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.019ms self 0.019ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/Compile total 4.115ms self 4.115ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/InitializeCompiledFunction total 0.512ms self 0.512ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/RunCompiledFunction total 2.985ms self 2.985ms children 0.000ms %children 0.00% 2021-04-12 16:02:47 root: INFO: timing SparkBackend.executeJSON/convertRegionValueToAnnotation total 2.958ms self 2.958ms children 0.000ms %children 0.00% 2021-04-12 16:02:48 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:49 MemoryStore: INFO: Block broadcast_9 stored as values in memory (estimated size 555.2 KB, free 21.7 GB) 2021-04-12 16:02:49 MemoryStore: INFO: Block broadcast_9_piece0 stored as bytes in memory (estimated size 40.7 KB, free 21.7 GB) 2021-04-12 16:02:49 BlockManagerInfo: INFO: Added broadcast_9_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 40.7 KB, free: 21.7 GB) 2021-04-12 16:02:49 SparkContext: INFO: Created broadcast 9 from broadcast at SparkBackend.scala:259 2021-04-12 16:02:49 SparkContext: INFO: Starting job: collect at LoadVCF.scala:1915 2021-04-12 16:02:49 DAGScheduler: INFO: Got job 3 (collect at LoadVCF.scala:1915) with 100 output partitions 2021-04-12 16:02:49 DAGScheduler: INFO: Final stage: ResultStage 3 (collect at LoadVCF.scala:1915) 2021-04-12 16:02:49 DAGScheduler: INFO: Parents of final stage: List() 2021-04-12 16:02:49 DAGScheduler: INFO: Missing parents: List() 2021-04-12 16:02:49 DAGScheduler: INFO: Submitting ResultStage 3 (MapPartitionsRDD[1207] at map at LoadVCF.scala:1894), which has no missing parents 2021-04-12 16:02:49 MemoryStore: INFO: Block broadcast_10 stored as values in memory (estimated size 11.6 KB, free 21.7 GB) 2021-04-12 16:02:49 MemoryStore: INFO: Block broadcast_10_piece0 stored as bytes in memory (estimated size 6.0 KB, free 21.7 GB) 2021-04-12 16:02:49 BlockManagerInfo: INFO: Added broadcast_10_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:02:49 SparkContext: INFO: Created broadcast 10 from broadcast at DAGScheduler.scala:1163 2021-04-12 16:02:49 DAGScheduler: INFO: Submitting 100 missing tasks from ResultStage 3 (MapPartitionsRDD[1207] at map at LoadVCF.scala:1894) (first 15 tasks are for partitions Vector(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)) 2021-04-12 16:02:49 YarnScheduler: INFO: Adding task set 3.0 with 100 tasks 2021-04-12 16:02:49 FairSchedulableBuilder: INFO: Added task set TaskSet_3.0 tasks to pool default 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 0.0 in stage 3.0 (TID 304, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 0, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 1.0 in stage 3.0 (TID 305, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 1, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 2.0 in stage 3.0 (TID 306, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 3.0 in stage 3.0 (TID 307, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 3, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 4.0 in stage 3.0 (TID 308, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 4, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 5.0 in stage 3.0 (TID 309, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 6.0 in stage 3.0 (TID 310, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 6, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 7.0 in stage 3.0 (TID 311, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 7, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 8.0 in stage 3.0 (TID 312, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 8, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 9.0 in stage 3.0 (TID 313, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 9, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 10.0 in stage 3.0 (TID 314, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 10, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 11.0 in stage 3.0 (TID 315, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 11, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 BlockManagerInfo: INFO: Added broadcast_10_piece0 in memory on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:49 BlockManagerInfo: INFO: Added broadcast_10_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:49 BlockManagerInfo: INFO: Added broadcast_10_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 12.0 in stage 3.0 (TID 316, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 12, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 0.0 in stage 3.0 (TID 304) in 188 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (1/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 13.0 in stage 3.0 (TID 317, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 13, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 2.0 in stage 3.0 (TID 306) in 221 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (2/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 14.0 in stage 3.0 (TID 318, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 14, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 10.0 in stage 3.0 (TID 314) in 208 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (3/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 15.0 in stage 3.0 (TID 319, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 15, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 1.0 in stage 3.0 (TID 305) in 278 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (4/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 16.0 in stage 3.0 (TID 320, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 16, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 6.0 in stage 3.0 (TID 310) in 280 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (5/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 17.0 in stage 3.0 (TID 321, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 17, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 18.0 in stage 3.0 (TID 322, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 18, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 4.0 in stage 3.0 (TID 308) in 301 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (6/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 19.0 in stage 3.0 (TID 323, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 19, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 5.0 in stage 3.0 (TID 309) in 301 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (7/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 20.0 in stage 3.0 (TID 324, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 20, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 3.0 in stage 3.0 (TID 307) in 307 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (8/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 8.0 in stage 3.0 (TID 312) in 298 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (9/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 21.0 in stage 3.0 (TID 325, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 21, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 7.0 in stage 3.0 (TID 311) in 305 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (10/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 22.0 in stage 3.0 (TID 326, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 22, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 9.0 in stage 3.0 (TID 313) in 304 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (11/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 23.0 in stage 3.0 (TID 327, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 23, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 11.0 in stage 3.0 (TID 315) in 324 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (12/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 24.0 in stage 3.0 (TID 328, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 24, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 13.0 in stage 3.0 (TID 317) in 247 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (13/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 25.0 in stage 3.0 (TID 329, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 25, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 12.0 in stage 3.0 (TID 316) in 307 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (14/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 26.0 in stage 3.0 (TID 330, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 26, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 20.0 in stage 3.0 (TID 324) in 199 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (15/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 27.0 in stage 3.0 (TID 331, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 27, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 22.0 in stage 3.0 (TID 326) in 194 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (16/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 28.0 in stage 3.0 (TID 332, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 28, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 17.0 in stage 3.0 (TID 321) in 210 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (17/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 29.0 in stage 3.0 (TID 333, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 29, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 19.0 in stage 3.0 (TID 323) in 234 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (18/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 30.0 in stage 3.0 (TID 334, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 30, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 21.0 in stage 3.0 (TID 325) in 257 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (19/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 31.0 in stage 3.0 (TID 335, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 31, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 15.0 in stage 3.0 (TID 319) in 314 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (20/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 32.0 in stage 3.0 (TID 336, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 32, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 14.0 in stage 3.0 (TID 318) in 367 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (21/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 33.0 in stage 3.0 (TID 337, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 33, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 18.0 in stage 3.0 (TID 322) in 317 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (22/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 34.0 in stage 3.0 (TID 338, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 34, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 23.0 in stage 3.0 (TID 327) in 308 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (23/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 35.0 in stage 3.0 (TID 339, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 35, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 16.0 in stage 3.0 (TID 320) in 366 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (24/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 36.0 in stage 3.0 (TID 340, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 36, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 26.0 in stage 3.0 (TID 330) in 204 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (25/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 37.0 in stage 3.0 (TID 341, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 37, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 27.0 in stage 3.0 (TID 331) in 214 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (26/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 38.0 in stage 3.0 (TID 342, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 38, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 25.0 in stage 3.0 (TID 329) in 237 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (27/100) 2021-04-12 16:02:49 TaskSetManager: INFO: Starting task 39.0 in stage 3.0 (TID 343, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 39, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:49 TaskSetManager: INFO: Finished task 28.0 in stage 3.0 (TID 332) in 260 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (28/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 40.0 in stage 3.0 (TID 344, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 40, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 24.0 in stage 3.0 (TID 328) in 316 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (29/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 41.0 in stage 3.0 (TID 345, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 41, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 30.0 in stage 3.0 (TID 334) in 236 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (30/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 42.0 in stage 3.0 (TID 346, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 42, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 29.0 in stage 3.0 (TID 333) in 269 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (31/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 43.0 in stage 3.0 (TID 347, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 43, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 31.0 in stage 3.0 (TID 335) in 223 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (32/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 44.0 in stage 3.0 (TID 348, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 44, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 32.0 in stage 3.0 (TID 336) in 232 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (33/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 45.0 in stage 3.0 (TID 349, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 45, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 34.0 in stage 3.0 (TID 338) in 260 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (34/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 46.0 in stage 3.0 (TID 350, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 46, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 37.0 in stage 3.0 (TID 341) in 210 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (35/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 47.0 in stage 3.0 (TID 351, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 47, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 39.0 in stage 3.0 (TID 343) in 190 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (36/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 48.0 in stage 3.0 (TID 352, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 48, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 33.0 in stage 3.0 (TID 337) in 352 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (37/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 49.0 in stage 3.0 (TID 353, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 49, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 35.0 in stage 3.0 (TID 339) in 323 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (38/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 50.0 in stage 3.0 (TID 354, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 50, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 43.0 in stage 3.0 (TID 347) in 183 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (39/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 51.0 in stage 3.0 (TID 355, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 51, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 36.0 in stage 3.0 (TID 340) in 287 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (40/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 52.0 in stage 3.0 (TID 356, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 52, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 38.0 in stage 3.0 (TID 342) in 289 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (41/100) 2021-04-12 16:02:50 ExecutorAllocationManager: INFO: Requesting 3 new executors because tasks are backlogged (new desired total will be 4) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 53.0 in stage 3.0 (TID 357, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 53, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 41.0 in stage 3.0 (TID 345) in 236 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (42/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 54.0 in stage 3.0 (TID 358, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 54, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 42.0 in stage 3.0 (TID 346) in 244 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (43/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 55.0 in stage 3.0 (TID 359, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 55, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 44.0 in stage 3.0 (TID 348) in 254 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (44/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 56.0 in stage 3.0 (TID 360, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 56, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 40.0 in stage 3.0 (TID 344) in 297 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (45/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 57.0 in stage 3.0 (TID 361, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 57, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 45.0 in stage 3.0 (TID 349) in 274 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (46/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 58.0 in stage 3.0 (TID 362, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 58, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 50.0 in stage 3.0 (TID 354) in 192 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (47/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 59.0 in stage 3.0 (TID 363, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 59, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 46.0 in stage 3.0 (TID 350) in 280 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (48/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 60.0 in stage 3.0 (TID 364, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 60, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 48.0 in stage 3.0 (TID 352) in 244 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (49/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 61.0 in stage 3.0 (TID 365, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 61, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 47.0 in stage 3.0 (TID 351) in 258 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (50/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 62.0 in stage 3.0 (TID 366, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 62, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 51.0 in stage 3.0 (TID 355) in 264 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (51/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 63.0 in stage 3.0 (TID 367, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 63, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 52.0 in stage 3.0 (TID 356) in 258 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (52/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 64.0 in stage 3.0 (TID 368, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 64, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 55.0 in stage 3.0 (TID 359) in 216 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (53/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 65.0 in stage 3.0 (TID 369, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 65, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 56.0 in stage 3.0 (TID 360) in 216 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (54/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 66.0 in stage 3.0 (TID 370, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 66, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 49.0 in stage 3.0 (TID 353) in 321 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (55/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 67.0 in stage 3.0 (TID 371, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 67, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 53.0 in stage 3.0 (TID 357) in 274 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (56/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 68.0 in stage 3.0 (TID 372, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 68, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 57.0 in stage 3.0 (TID 361) in 261 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (57/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 69.0 in stage 3.0 (TID 373, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 69, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 61.0 in stage 3.0 (TID 365) in 249 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (58/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 70.0 in stage 3.0 (TID 374, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 70, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 60.0 in stage 3.0 (TID 364) in 263 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (59/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 71.0 in stage 3.0 (TID 375, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 71, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 63.0 in stage 3.0 (TID 367) in 217 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (60/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 72.0 in stage 3.0 (TID 376, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 72, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 58.0 in stage 3.0 (TID 362) in 310 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (61/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 73.0 in stage 3.0 (TID 377, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 73, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 66.0 in stage 3.0 (TID 370) in 215 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (62/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 74.0 in stage 3.0 (TID 378, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 74, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 59.0 in stage 3.0 (TID 363) in 319 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (63/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 75.0 in stage 3.0 (TID 379, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 75, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 65.0 in stage 3.0 (TID 369) in 240 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (64/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 76.0 in stage 3.0 (TID 380, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 76, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 62.0 in stage 3.0 (TID 366) in 304 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (65/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 77.0 in stage 3.0 (TID 381, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 77, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 67.0 in stage 3.0 (TID 371) in 276 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (66/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 78.0 in stage 3.0 (TID 382, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 78, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 64.0 in stage 3.0 (TID 368) in 333 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (67/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 79.0 in stage 3.0 (TID 383, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 79, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 69.0 in stage 3.0 (TID 373) in 263 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (68/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 80.0 in stage 3.0 (TID 384, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 80, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 75.0 in stage 3.0 (TID 379) in 200 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (69/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 81.0 in stage 3.0 (TID 385, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 81, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 72.0 in stage 3.0 (TID 376) in 257 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (70/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 82.0 in stage 3.0 (TID 386, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 82, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 76.0 in stage 3.0 (TID 380) in 205 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (71/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 83.0 in stage 3.0 (TID 387, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 83, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 73.0 in stage 3.0 (TID 377) in 261 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (72/100) 2021-04-12 16:02:50 TaskSetManager: INFO: Starting task 84.0 in stage 3.0 (TID 388, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 84, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:50 TaskSetManager: INFO: Finished task 77.0 in stage 3.0 (TID 381) in 186 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (73/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 85.0 in stage 3.0 (TID 389, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 85, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 74.0 in stage 3.0 (TID 378) in 253 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (74/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 86.0 in stage 3.0 (TID 390, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 86, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 68.0 in stage 3.0 (TID 372) in 366 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (75/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Marking task 54 in stage 3.0 (on berylc-w-0.us-central1-b.c.human-genetics-001.internal) as speculatable because it ran more than 390 ms 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 87.0 in stage 3.0 (TID 391, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 87, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 71.0 in stage 3.0 (TID 375) in 359 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (76/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 88.0 in stage 3.0 (TID 392, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 88, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 70.0 in stage 3.0 (TID 374) in 390 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (77/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 89.0 in stage 3.0 (TID 393, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 89, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 78.0 in stage 3.0 (TID 382) in 291 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (78/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 90.0 in stage 3.0 (TID 394, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 90, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 84.0 in stage 3.0 (TID 388) in 166 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (79/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 91.0 in stage 3.0 (TID 395, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 91, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 80.0 in stage 3.0 (TID 384) in 217 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (80/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 92.0 in stage 3.0 (TID 396, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 92, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 85.0 in stage 3.0 (TID 389) in 176 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (81/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 93.0 in stage 3.0 (TID 397, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 93, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 83.0 in stage 3.0 (TID 387) in 208 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (82/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 94.0 in stage 3.0 (TID 398, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 94, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 79.0 in stage 3.0 (TID 383) in 283 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (83/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 95.0 in stage 3.0 (TID 399, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 95, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 81.0 in stage 3.0 (TID 385) in 273 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (84/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 96.0 in stage 3.0 (TID 400, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 96, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 86.0 in stage 3.0 (TID 390) in 227 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (85/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 97.0 in stage 3.0 (TID 401, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 97, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 82.0 in stage 3.0 (TID 386) in 274 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (86/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 98.0 in stage 3.0 (TID 402, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 98, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 88.0 in stage 3.0 (TID 392) in 191 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (87/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Starting task 99.0 in stage 3.0 (TID 403, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 99, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 89.0 in stage 3.0 (TID 393) in 214 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (88/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 92.0 in stage 3.0 (TID 396) in 180 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (89/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 93.0 in stage 3.0 (TID 397) in 175 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (90/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 54.0 in stage 3.0 (TID 358) in 1101 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (91/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 94.0 in stage 3.0 (TID 398) in 185 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (92/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 87.0 in stage 3.0 (TID 391) in 353 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (93/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 91.0 in stage 3.0 (TID 395) in 248 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (94/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 90.0 in stage 3.0 (TID 394) in 296 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (95/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 96.0 in stage 3.0 (TID 400) in 239 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (96/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 95.0 in stage 3.0 (TID 399) in 258 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (97/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 98.0 in stage 3.0 (TID 402) in 279 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (98/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 97.0 in stage 3.0 (TID 401) in 309 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (99/100) 2021-04-12 16:02:51 TaskSetManager: INFO: Finished task 99.0 in stage 3.0 (TID 403) in 299 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (100/100) 2021-04-12 16:02:51 YarnScheduler: INFO: Removed TaskSet 3.0, whose tasks have all completed, from pool default 2021-04-12 16:02:51 DAGScheduler: INFO: ResultStage 3 (collect at LoadVCF.scala:1915) finished in 2.428 s 2021-04-12 16:02:51 DAGScheduler: INFO: Job 3 finished: collect at LoadVCF.scala:1915, took 2.431862 s 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 97 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 88 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 80 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 79 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 86 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 96 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 89 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 94 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 76 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 82 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 100 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 98 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 81 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 BlockManagerInfo: INFO: Removed broadcast_7_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 40.8 KB, free: 21.7 GB) 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 84 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 92 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 87 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 99 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 78 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 77 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 83 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 91 2021-04-12 16:02:51 ContextCleaner: INFO: Cleaned accumulator 95 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:51 BlockManagerInfo: INFO: Removed broadcast_10_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:02:51 BlockManagerInfo: INFO: Removed broadcast_10_piece0 on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:51 BlockManagerInfo: INFO: Removed broadcast_10_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:51 BlockManagerInfo: INFO: Removed broadcast_10_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:51 root: INFO: encoder cache hit 2021-04-12 16:02:52 ContextCleaner: INFO: Cleaned accumulator 90 2021-04-12 16:02:52 ContextCleaner: INFO: Cleaned accumulator 93 2021-04-12 16:02:52 ContextCleaner: INFO: Cleaned accumulator 85 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: encoder cache hit 2021-04-12 16:02:52 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:52 root: INFO: timing SparkBackend.pyImportVCFs total 3.508s self 3.508s children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:53 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:53 root: INFO: timing SparkBackend.parse_value_ir total 38.772ms self 38.772ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:53 root: INFO: starting execution of query hail_query_5 of initial size 15 2021-04-12 16:02:53 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 15: (ToArray (StreamMap __uid_61 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __uid_61)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __uid_61)))) (Apply includesStart () Boolean (Ref __uid_61)) (Apply includesEnd () Boolean (Ref __uid_61))))) 2021-04-12 16:02:53 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 15: (ToArray (StreamMap __iruid_175 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_175)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_175)))) (Apply includesStart () Boolean (Ref __iruid_175)) (Apply includesEnd () Boolean (Ref __iruid_175))))) 2021-04-12 16:02:53 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 15: (ToArray (StreamMap __iruid_175 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_175)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_175)))) (Apply includesStart () Boolean (Ref __iruid_175)) (Apply includesEnd () Boolean (Ref __iruid_175))))) 2021-04-12 16:02:53 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 15: (ToArray (StreamMap __iruid_178 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_178)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_178)))) (Apply includesStart () Boolean (Ref __iruid_178)) (Apply includesEnd () Boolean (Ref __iruid_178))))) 2021-04-12 16:02:53 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 15: (ToArray (StreamMap __iruid_178 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_178)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_178)))) (Apply includesStart () Boolean (Ref __iruid_178)) (Apply includesEnd () Boolean (Ref __iruid_178))))) 2021-04-12 16:02:53 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 15: (ToArray (StreamMap __iruid_181 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_181)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_181)))) (Apply includesStart () Boolean (Ref __iruid_181)) (Apply includesEnd () Boolean (Ref __iruid_181))))) 2021-04-12 16:02:53 root: INFO: RegionPool: REPORT_THRESHOLD: 289.6K allocated (128.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:53 root: INFO: finished execution of query hail_query_5 2021-04-12 16:02:53 root: INFO: RegionPool: FREE: 417.6K allocated (256.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON total 45.075ms self 18.404ms children 26.671ms %children 59.17% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR total 6.733ms self 0.023ms children 6.710ms %children 99.66% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.010ms self 0.010ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation total 6.688ms self 1.413ms children 5.275ms %children 78.87% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize total 5.275ms self 0.077ms children 5.198ms %children 98.53% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.296ms self 0.296ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.145ms self 0.145ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.180ms self 0.180ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.652ms self 0.652ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.076ms self 0.076ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.951ms self 0.951ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.310ms self 0.310ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.065ms self 0.065ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.136ms self 0.136ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.477ms self 0.477ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.054ms self 0.054ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.455ms self 0.455ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.248ms self 0.248ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.108ms self 0.108ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.139ms self 0.139ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.435ms self 0.435ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.055ms self 0.055ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.418ms self 0.418ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.011ms self 0.011ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable total 0.088ms self 0.007ms children 0.081ms %children 92.30% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.007ms self 0.007ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/LoweringTransformation total 0.056ms self 0.056ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.019ms self 0.019ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable total 8.108ms self 0.017ms children 8.091ms %children 99.79% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.014ms self 0.014ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation total 8.063ms self 3.889ms children 4.174ms %children 51.77% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize total 4.174ms self 0.067ms children 4.107ms %children 98.39% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.111ms self 0.111ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.087ms self 0.087ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.157ms self 0.157ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.502ms self 0.502ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.058ms self 0.058ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.519ms self 0.519ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.254ms self 0.254ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.073ms self 0.073ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.128ms self 0.128ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.425ms self 0.425ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.067ms self 0.067ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.444ms self 0.444ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.230ms self 0.230ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.057ms self 0.057ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.140ms self 0.140ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.415ms self 0.415ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.053ms self 0.053ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.388ms self 0.388ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.014ms self 0.014ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable total 0.087ms self 0.006ms children 0.081ms %children 93.38% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.014ms self 0.014ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/LoweringTransformation total 0.043ms self 0.043ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.025ms self 0.025ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable total 5.221ms self 0.009ms children 5.212ms %children 99.83% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.005ms self 0.005ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation total 5.197ms self 1.095ms children 4.102ms %children 78.93% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize total 4.102ms self 0.067ms children 4.035ms %children 98.37% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.108ms self 0.108ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.077ms self 0.077ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.143ms self 0.143ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.442ms self 0.442ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.052ms self 0.052ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.513ms self 0.513ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.282ms self 0.282ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.080ms self 0.080ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.155ms self 0.155ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.449ms self 0.449ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.052ms self 0.052ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.418ms self 0.418ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.229ms self 0.229ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.058ms self 0.058ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.121ms self 0.121ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.403ms self 0.403ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.050ms self 0.050ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.403ms self 0.403ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.011ms self 0.011ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/Compile total 2.990ms self 2.990ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/InitializeCompiledFunction total 0.271ms self 0.271ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/RunCompiledFunction total 1.424ms self 1.424ms children 0.000ms %children 0.00% 2021-04-12 16:02:53 root: INFO: timing SparkBackend.executeJSON/convertRegionValueToAnnotation total 1.749ms self 1.749ms children 0.000ms %children 0.00% 2021-04-12 16:02:54 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:54 MemoryStore: INFO: Block broadcast_11 stored as values in memory (estimated size 555.2 KB, free 21.7 GB) 2021-04-12 16:02:54 MemoryStore: INFO: Block broadcast_11_piece0 stored as bytes in memory (estimated size 40.7 KB, free 21.7 GB) 2021-04-12 16:02:54 BlockManagerInfo: INFO: Added broadcast_11_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 40.7 KB, free: 21.7 GB) 2021-04-12 16:02:54 SparkContext: INFO: Created broadcast 11 from broadcast at SparkBackend.scala:259 2021-04-12 16:02:55 SparkContext: INFO: Starting job: collect at LoadVCF.scala:1915 2021-04-12 16:02:55 DAGScheduler: INFO: Got job 4 (collect at LoadVCF.scala:1915) with 100 output partitions 2021-04-12 16:02:55 DAGScheduler: INFO: Final stage: ResultStage 4 (collect at LoadVCF.scala:1915) 2021-04-12 16:02:55 DAGScheduler: INFO: Parents of final stage: List() 2021-04-12 16:02:55 DAGScheduler: INFO: Missing parents: List() 2021-04-12 16:02:55 DAGScheduler: INFO: Submitting ResultStage 4 (MapPartitionsRDD[1609] at map at LoadVCF.scala:1894), which has no missing parents 2021-04-12 16:02:55 MemoryStore: INFO: Block broadcast_12 stored as values in memory (estimated size 11.6 KB, free 21.7 GB) 2021-04-12 16:02:55 MemoryStore: INFO: Block broadcast_12_piece0 stored as bytes in memory (estimated size 6.0 KB, free 21.7 GB) 2021-04-12 16:02:55 BlockManagerInfo: INFO: Added broadcast_12_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:02:55 SparkContext: INFO: Created broadcast 12 from broadcast at DAGScheduler.scala:1163 2021-04-12 16:02:55 DAGScheduler: INFO: Submitting 100 missing tasks from ResultStage 4 (MapPartitionsRDD[1609] at map at LoadVCF.scala:1894) (first 15 tasks are for partitions Vector(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)) 2021-04-12 16:02:55 YarnScheduler: INFO: Adding task set 4.0 with 100 tasks 2021-04-12 16:02:55 FairSchedulableBuilder: INFO: Added task set TaskSet_4.0 tasks to pool default 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 0.0 in stage 4.0 (TID 404, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 0, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 1.0 in stage 4.0 (TID 405, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 1, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 2.0 in stage 4.0 (TID 406, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 3.0 in stage 4.0 (TID 407, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 3, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 4.0 in stage 4.0 (TID 408, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 4, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 5.0 in stage 4.0 (TID 409, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 6.0 in stage 4.0 (TID 410, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 6, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 7.0 in stage 4.0 (TID 411, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 7, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 8.0 in stage 4.0 (TID 412, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 8, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 9.0 in stage 4.0 (TID 413, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 9, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 10.0 in stage 4.0 (TID 414, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 10, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 11.0 in stage 4.0 (TID 415, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 11, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 BlockManagerInfo: INFO: Added broadcast_12_piece0 in memory on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:55 BlockManagerInfo: INFO: Added broadcast_12_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:55 BlockManagerInfo: INFO: Added broadcast_12_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 12.0 in stage 4.0 (TID 416, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 12, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 0.0 in stage 4.0 (TID 404) in 134 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (1/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 13.0 in stage 4.0 (TID 417, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 13, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 2.0 in stage 4.0 (TID 406) in 145 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (2/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 14.0 in stage 4.0 (TID 418, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 14, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 6.0 in stage 4.0 (TID 410) in 188 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (3/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 15.0 in stage 4.0 (TID 419, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 15, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 1.0 in stage 4.0 (TID 405) in 216 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (4/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 16.0 in stage 4.0 (TID 420, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 16, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 3.0 in stage 4.0 (TID 407) in 220 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (5/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 17.0 in stage 4.0 (TID 421, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 17, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 11.0 in stage 4.0 (TID 415) in 233 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (6/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 18.0 in stage 4.0 (TID 422, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 18, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 10.0 in stage 4.0 (TID 414) in 255 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (7/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 19.0 in stage 4.0 (TID 423, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 19, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 9.0 in stage 4.0 (TID 413) in 263 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (8/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 20.0 in stage 4.0 (TID 424, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 20, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 8.0 in stage 4.0 (TID 412) in 275 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (9/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 21.0 in stage 4.0 (TID 425, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 21, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 5.0 in stage 4.0 (TID 409) in 296 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (10/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 22.0 in stage 4.0 (TID 426, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 22, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 4.0 in stage 4.0 (TID 408) in 299 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (11/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 23.0 in stage 4.0 (TID 427, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 23, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 12.0 in stage 4.0 (TID 416) in 219 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (12/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 24.0 in stage 4.0 (TID 428, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 24, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 15.0 in stage 4.0 (TID 419) in 156 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (13/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 25.0 in stage 4.0 (TID 429, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 25, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 7.0 in stage 4.0 (TID 411) in 368 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (14/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 26.0 in stage 4.0 (TID 430, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 26, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 14.0 in stage 4.0 (TID 418) in 196 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (15/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 27.0 in stage 4.0 (TID 431, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 27, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 13.0 in stage 4.0 (TID 417) in 264 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (16/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 28.0 in stage 4.0 (TID 432, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 28, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 17.0 in stage 4.0 (TID 421) in 217 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (17/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 29.0 in stage 4.0 (TID 433, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 29, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 16.0 in stage 4.0 (TID 420) in 243 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (18/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 30.0 in stage 4.0 (TID 434, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 30, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 20.0 in stage 4.0 (TID 424) in 257 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (19/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 31.0 in stage 4.0 (TID 435, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 31, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 19.0 in stage 4.0 (TID 423) in 271 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (20/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 32.0 in stage 4.0 (TID 436, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 32, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 22.0 in stage 4.0 (TID 426) in 248 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (21/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 33.0 in stage 4.0 (TID 437, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 33, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 18.0 in stage 4.0 (TID 422) in 287 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (22/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 34.0 in stage 4.0 (TID 438, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 34, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 21.0 in stage 4.0 (TID 425) in 256 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (23/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 35.0 in stage 4.0 (TID 439, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 35, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 24.0 in stage 4.0 (TID 428) in 198 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (24/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 36.0 in stage 4.0 (TID 440, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 36, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 25.0 in stage 4.0 (TID 429) in 238 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (25/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 37.0 in stage 4.0 (TID 441, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 37, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 23.0 in stage 4.0 (TID 427) in 315 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (26/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 38.0 in stage 4.0 (TID 442, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 38, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 27.0 in stage 4.0 (TID 431) in 272 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (27/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 39.0 in stage 4.0 (TID 443, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 39, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 26.0 in stage 4.0 (TID 430) in 315 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (28/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 40.0 in stage 4.0 (TID 444, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 40, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 28.0 in stage 4.0 (TID 432) in 274 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (29/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 41.0 in stage 4.0 (TID 445, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 41, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 33.0 in stage 4.0 (TID 437) in 186 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (30/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 42.0 in stage 4.0 (TID 446, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 42, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 32.0 in stage 4.0 (TID 436) in 216 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (31/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 43.0 in stage 4.0 (TID 447, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 43, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 35.0 in stage 4.0 (TID 439) in 202 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (32/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 44.0 in stage 4.0 (TID 448, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 44, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 34.0 in stage 4.0 (TID 438) in 216 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (33/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 45.0 in stage 4.0 (TID 449, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 45, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 30.0 in stage 4.0 (TID 434) in 237 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (34/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 46.0 in stage 4.0 (TID 450, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 46, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 31.0 in stage 4.0 (TID 435) in 259 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (35/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 47.0 in stage 4.0 (TID 451, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 47, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 37.0 in stage 4.0 (TID 441) in 146 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (36/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 48.0 in stage 4.0 (TID 452, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 48, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 29.0 in stage 4.0 (TID 433) in 366 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (37/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 49.0 in stage 4.0 (TID 453, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 49, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 36.0 in stage 4.0 (TID 440) in 238 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (38/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 50.0 in stage 4.0 (TID 454, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 50, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 41.0 in stage 4.0 (TID 445) in 128 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (39/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 51.0 in stage 4.0 (TID 455, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 51, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 38.0 in stage 4.0 (TID 442) in 253 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (40/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 52.0 in stage 4.0 (TID 456, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 52, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 45.0 in stage 4.0 (TID 449) in 168 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (41/100) 2021-04-12 16:02:55 TaskSetManager: INFO: Starting task 53.0 in stage 4.0 (TID 457, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 53, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:55 TaskSetManager: INFO: Finished task 44.0 in stage 4.0 (TID 448) in 182 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (42/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 54.0 in stage 4.0 (TID 458, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 54, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 40.0 in stage 4.0 (TID 444) in 260 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (43/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 55.0 in stage 4.0 (TID 459, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 55, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 43.0 in stage 4.0 (TID 447) in 231 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (44/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 56.0 in stage 4.0 (TID 460, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 56, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 39.0 in stage 4.0 (TID 443) in 304 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (45/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 57.0 in stage 4.0 (TID 461, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 57, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 46.0 in stage 4.0 (TID 450) in 209 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (46/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 58.0 in stage 4.0 (TID 462, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 58, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 47.0 in stage 4.0 (TID 451) in 205 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (47/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 59.0 in stage 4.0 (TID 463, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 59, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 42.0 in stage 4.0 (TID 446) in 250 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (48/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 60.0 in stage 4.0 (TID 464, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 60, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 49.0 in stage 4.0 (TID 453) in 185 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (49/100) 2021-04-12 16:02:56 ExecutorAllocationManager: INFO: Requesting 3 new executors because tasks are backlogged (new desired total will be 4) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 61.0 in stage 4.0 (TID 465, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 61, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 50.0 in stage 4.0 (TID 454) in 228 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (50/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 62.0 in stage 4.0 (TID 466, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 62, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 48.0 in stage 4.0 (TID 452) in 293 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (51/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 63.0 in stage 4.0 (TID 467, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 63, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 58.0 in stage 4.0 (TID 462) in 170 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (52/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 64.0 in stage 4.0 (TID 468, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 64, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 53.0 in stage 4.0 (TID 457) in 247 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (53/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 65.0 in stage 4.0 (TID 469, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 65, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 59.0 in stage 4.0 (TID 463) in 190 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (54/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 66.0 in stage 4.0 (TID 470, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 66, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 52.0 in stage 4.0 (TID 456) in 276 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (55/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 67.0 in stage 4.0 (TID 471, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 67, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 60.0 in stage 4.0 (TID 464) in 187 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (56/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 68.0 in stage 4.0 (TID 472, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 68, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 51.0 in stage 4.0 (TID 455) in 305 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (57/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 69.0 in stage 4.0 (TID 473, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 69, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 55.0 in stage 4.0 (TID 459) in 243 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (58/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 70.0 in stage 4.0 (TID 474, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 70, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 57.0 in stage 4.0 (TID 461) in 251 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (59/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 71.0 in stage 4.0 (TID 475, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 71, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 56.0 in stage 4.0 (TID 460) in 285 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (60/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 72.0 in stage 4.0 (TID 476, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 72, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 54.0 in stage 4.0 (TID 458) in 349 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (61/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 73.0 in stage 4.0 (TID 477, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 73, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 62.0 in stage 4.0 (TID 466) in 252 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (62/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 74.0 in stage 4.0 (TID 478, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 74, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 61.0 in stage 4.0 (TID 465) in 303 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (63/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 75.0 in stage 4.0 (TID 479, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 75, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 67.0 in stage 4.0 (TID 471) in 176 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (64/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 76.0 in stage 4.0 (TID 480, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 76, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 63.0 in stage 4.0 (TID 467) in 262 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (65/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 77.0 in stage 4.0 (TID 481, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 77, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 66.0 in stage 4.0 (TID 470) in 237 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (66/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 78.0 in stage 4.0 (TID 482, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 78, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 64.0 in stage 4.0 (TID 468) in 260 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (67/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 79.0 in stage 4.0 (TID 483, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 79, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 65.0 in stage 4.0 (TID 469) in 265 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (68/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 80.0 in stage 4.0 (TID 484, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 80, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 69.0 in stage 4.0 (TID 473) in 239 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (69/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 81.0 in stage 4.0 (TID 485, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 81, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 70.0 in stage 4.0 (TID 474) in 229 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (70/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 82.0 in stage 4.0 (TID 486, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 82, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 68.0 in stage 4.0 (TID 472) in 274 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (71/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 83.0 in stage 4.0 (TID 487, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 83, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 71.0 in stage 4.0 (TID 475) in 277 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (72/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 84.0 in stage 4.0 (TID 488, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 84, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 72.0 in stage 4.0 (TID 476) in 227 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (73/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 85.0 in stage 4.0 (TID 489, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 85, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 73.0 in stage 4.0 (TID 477) in 198 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (74/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 86.0 in stage 4.0 (TID 490, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 86, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 74.0 in stage 4.0 (TID 478) in 206 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (75/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 87.0 in stage 4.0 (TID 491, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 87, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 76.0 in stage 4.0 (TID 480) in 229 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (76/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 88.0 in stage 4.0 (TID 492, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 88, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 77.0 in stage 4.0 (TID 481) in 230 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (77/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 89.0 in stage 4.0 (TID 493, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 89, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 82.0 in stage 4.0 (TID 486) in 191 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (78/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 90.0 in stage 4.0 (TID 494, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 90, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 80.0 in stage 4.0 (TID 484) in 271 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (79/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Marking task 75 in stage 4.0 (on berylc-w-0.us-central1-b.c.human-genetics-001.internal) as speculatable because it ran more than 359 ms 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 91.0 in stage 4.0 (TID 495, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 91, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 81.0 in stage 4.0 (TID 485) in 279 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (80/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 92.0 in stage 4.0 (TID 496, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 92, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 86.0 in stage 4.0 (TID 490) in 173 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (81/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 93.0 in stage 4.0 (TID 497, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 93, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 78.0 in stage 4.0 (TID 482) in 328 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (82/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 94.0 in stage 4.0 (TID 498, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 94, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 75.0 in stage 4.0 (TID 479) in 412 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (83/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 95.0 in stage 4.0 (TID 499, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 95, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 79.0 in stage 4.0 (TID 483) in 382 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (84/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 96.0 in stage 4.0 (TID 500, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 96, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 83.0 in stage 4.0 (TID 487) in 296 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (85/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 97.0 in stage 4.0 (TID 501, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 97, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 87.0 in stage 4.0 (TID 491) in 198 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (86/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 98.0 in stage 4.0 (TID 502, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 98, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 84.0 in stage 4.0 (TID 488) in 310 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (87/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Starting task 99.0 in stage 4.0 (TID 503, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 99, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 88.0 in stage 4.0 (TID 492) in 252 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (88/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 91.0 in stage 4.0 (TID 495) in 185 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (89/100) 2021-04-12 16:02:56 TaskSetManager: INFO: Marking task 85 in stage 4.0 (on berylc-w-0.us-central1-b.c.human-genetics-001.internal) as speculatable because it ran more than 365 ms 2021-04-12 16:02:56 TaskSetManager: INFO: Finished task 85.0 in stage 4.0 (TID 489) in 403 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (90/100) 2021-04-12 16:02:57 TaskSetManager: INFO: Finished task 89.0 in stage 4.0 (TID 493) in 323 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (91/100) 2021-04-12 16:02:57 TaskSetManager: INFO: Finished task 96.0 in stage 4.0 (TID 500) in 194 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (92/100) 2021-04-12 16:02:57 TaskSetManager: INFO: Finished task 92.0 in stage 4.0 (TID 496) in 286 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (93/100) 2021-04-12 16:02:57 TaskSetManager: INFO: Finished task 99.0 in stage 4.0 (TID 503) in 131 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (94/100) 2021-04-12 16:02:57 TaskSetManager: INFO: Finished task 94.0 in stage 4.0 (TID 498) in 259 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (95/100) 2021-04-12 16:02:57 TaskSetManager: INFO: Finished task 93.0 in stage 4.0 (TID 497) in 299 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (96/100) 2021-04-12 16:02:57 TaskSetManager: INFO: Finished task 90.0 in stage 4.0 (TID 494) in 355 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (97/100) 2021-04-12 16:02:57 TaskSetManager: INFO: Finished task 97.0 in stage 4.0 (TID 501) in 241 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (98/100) 2021-04-12 16:02:57 TaskSetManager: INFO: Finished task 98.0 in stage 4.0 (TID 502) in 265 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (99/100) 2021-04-12 16:02:57 TaskSetManager: INFO: Finished task 95.0 in stage 4.0 (TID 499) in 332 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (100/100) 2021-04-12 16:02:57 YarnScheduler: INFO: Removed TaskSet 4.0, whose tasks have all completed, from pool default 2021-04-12 16:02:57 DAGScheduler: INFO: ResultStage 4 (collect at LoadVCF.scala:1915) finished in 2.182 s 2021-04-12 16:02:57 DAGScheduler: INFO: Job 4 finished: collect at LoadVCF.scala:1915, took 2.184496 s 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 115 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 108 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 119 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 109 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 107 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 113 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 118 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 112 2021-04-12 16:02:57 BlockManagerInfo: INFO: Removed broadcast_12_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:02:57 BlockManagerInfo: INFO: Removed broadcast_12_piece0 on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:57 BlockManagerInfo: INFO: Removed broadcast_12_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:57 BlockManagerInfo: INFO: Removed broadcast_12_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 102 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 106 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 117 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 116 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 105 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 121 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 110 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 114 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 111 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 122 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 101 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 120 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 104 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 123 2021-04-12 16:02:57 BlockManagerInfo: INFO: Removed broadcast_9_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 40.7 KB, free: 21.7 GB) 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 103 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 124 2021-04-12 16:02:57 ContextCleaner: INFO: Cleaned accumulator 125 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: encoder cache hit 2021-04-12 16:02:57 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:57 root: INFO: timing SparkBackend.pyImportVCFs total 3.070s self 3.070s children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:59 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:59 root: INFO: timing SparkBackend.parse_value_ir total 39.531ms self 39.531ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:02:59 root: INFO: starting execution of query hail_query_6 of initial size 15 2021-04-12 16:02:59 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 15: (ToArray (StreamMap __uid_65 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __uid_65)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __uid_65)))) (Apply includesStart () Boolean (Ref __uid_65)) (Apply includesEnd () Boolean (Ref __uid_65))))) 2021-04-12 16:02:59 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 15: (ToArray (StreamMap __iruid_184 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_184)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_184)))) (Apply includesStart () Boolean (Ref __iruid_184)) (Apply includesEnd () Boolean (Ref __iruid_184))))) 2021-04-12 16:02:59 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 15: (ToArray (StreamMap __iruid_184 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_184)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_184)))) (Apply includesStart () Boolean (Ref __iruid_184)) (Apply includesEnd () Boolean (Ref __iruid_184))))) 2021-04-12 16:02:59 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 15: (ToArray (StreamMap __iruid_187 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_187)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_187)))) (Apply includesStart () Boolean (Ref __iruid_187)) (Apply includesEnd () Boolean (Ref __iruid_187))))) 2021-04-12 16:02:59 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 15: (ToArray (StreamMap __iruid_187 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_187)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_187)))) (Apply includesStart () Boolean (Ref __iruid_187)) (Apply includesEnd () Boolean (Ref __iruid_187))))) 2021-04-12 16:02:59 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 15: (ToArray (StreamMap __iruid_190 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_190)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_190)))) (Apply includesStart () Boolean (Ref __iruid_190)) (Apply includesEnd () Boolean (Ref __iruid_190))))) 2021-04-12 16:02:59 root: INFO: RegionPool: REPORT_THRESHOLD: 289.6K allocated (128.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:59 root: INFO: finished execution of query hail_query_6 2021-04-12 16:02:59 root: INFO: RegionPool: FREE: 417.6K allocated (256.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON total 39.773ms self 12.811ms children 26.962ms %children 67.79% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR total 7.535ms self 0.019ms children 7.516ms %children 99.75% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.011ms self 0.011ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation total 7.465ms self 2.049ms children 5.416ms %children 72.56% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize total 5.416ms self 0.110ms children 5.306ms %children 97.97% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.142ms self 0.142ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.120ms self 0.120ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.161ms self 0.161ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.577ms self 0.577ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.074ms self 0.074ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.494ms self 0.494ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.333ms self 0.333ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.062ms self 0.062ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.152ms self 0.152ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.511ms self 0.511ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.050ms self 0.050ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.516ms self 0.516ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.271ms self 0.271ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.091ms self 0.091ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.153ms self 0.153ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.753ms self 0.753ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.083ms self 0.083ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.765ms self 0.765ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.041ms self 0.041ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable total 0.114ms self 0.007ms children 0.108ms %children 94.30% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.011ms self 0.011ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/LoweringTransformation total 0.080ms self 0.080ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.017ms self 0.017ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable total 7.116ms self 0.026ms children 7.090ms %children 99.63% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.009ms self 0.009ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation total 7.064ms self 1.397ms children 5.667ms %children 80.22% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize total 5.667ms self 0.074ms children 5.593ms %children 98.69% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.143ms self 0.143ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.102ms self 0.102ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.186ms self 0.186ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 1.225ms self 1.225ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.060ms self 0.060ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.807ms self 0.807ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.269ms self 0.269ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.092ms self 0.092ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.140ms self 0.140ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.441ms self 0.441ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.064ms self 0.064ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.455ms self 0.455ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.232ms self 0.232ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.058ms self 0.058ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.190ms self 0.190ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.534ms self 0.534ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.079ms self 0.079ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.514ms self 0.514ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.017ms self 0.017ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable total 0.097ms self 0.003ms children 0.093ms %children 96.78% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.013ms self 0.013ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/LoweringTransformation total 0.045ms self 0.045ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.036ms self 0.036ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable total 5.334ms self 0.005ms children 5.328ms %children 99.90% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.004ms self 0.004ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation total 5.315ms self 0.976ms children 4.339ms %children 81.64% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize total 4.339ms self 0.046ms children 4.293ms %children 98.94% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.101ms self 0.101ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.063ms self 0.063ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.160ms self 0.160ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.463ms self 0.463ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.051ms self 0.051ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.654ms self 0.654ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.235ms self 0.235ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.058ms self 0.058ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.159ms self 0.159ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.552ms self 0.552ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.051ms self 0.051ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.430ms self 0.430ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.259ms self 0.259ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.065ms self 0.065ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.109ms self 0.109ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.427ms self 0.427ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.052ms self 0.052ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.402ms self 0.402ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.009ms self 0.009ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/Compile total 3.219ms self 3.219ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/InitializeCompiledFunction total 0.267ms self 0.267ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/RunCompiledFunction total 1.546ms self 1.546ms children 0.000ms %children 0.00% 2021-04-12 16:02:59 root: INFO: timing SparkBackend.executeJSON/convertRegionValueToAnnotation total 1.733ms self 1.733ms children 0.000ms %children 0.00% 2021-04-12 16:03:00 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:00 MemoryStore: INFO: Block broadcast_13 stored as values in memory (estimated size 555.2 KB, free 21.7 GB) 2021-04-12 16:03:00 MemoryStore: INFO: Block broadcast_13_piece0 stored as bytes in memory (estimated size 40.7 KB, free 21.7 GB) 2021-04-12 16:03:00 BlockManagerInfo: INFO: Added broadcast_13_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 40.7 KB, free: 21.7 GB) 2021-04-12 16:03:00 SparkContext: INFO: Created broadcast 13 from broadcast at SparkBackend.scala:259 2021-04-12 16:03:00 SparkContext: INFO: Starting job: collect at LoadVCF.scala:1915 2021-04-12 16:03:00 DAGScheduler: INFO: Got job 5 (collect at LoadVCF.scala:1915) with 100 output partitions 2021-04-12 16:03:00 DAGScheduler: INFO: Final stage: ResultStage 5 (collect at LoadVCF.scala:1915) 2021-04-12 16:03:00 DAGScheduler: INFO: Parents of final stage: List() 2021-04-12 16:03:00 DAGScheduler: INFO: Missing parents: List() 2021-04-12 16:03:00 DAGScheduler: INFO: Submitting ResultStage 5 (MapPartitionsRDD[2011] at map at LoadVCF.scala:1894), which has no missing parents 2021-04-12 16:03:00 MemoryStore: INFO: Block broadcast_14 stored as values in memory (estimated size 11.6 KB, free 21.7 GB) 2021-04-12 16:03:00 MemoryStore: INFO: Block broadcast_14_piece0 stored as bytes in memory (estimated size 6.0 KB, free 21.7 GB) 2021-04-12 16:03:00 BlockManagerInfo: INFO: Added broadcast_14_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:03:00 SparkContext: INFO: Created broadcast 14 from broadcast at DAGScheduler.scala:1163 2021-04-12 16:03:00 DAGScheduler: INFO: Submitting 100 missing tasks from ResultStage 5 (MapPartitionsRDD[2011] at map at LoadVCF.scala:1894) (first 15 tasks are for partitions Vector(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)) 2021-04-12 16:03:00 YarnScheduler: INFO: Adding task set 5.0 with 100 tasks 2021-04-12 16:03:00 FairSchedulableBuilder: INFO: Added task set TaskSet_5.0 tasks to pool default 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 0.0 in stage 5.0 (TID 504, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 0, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 1.0 in stage 5.0 (TID 505, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 1, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 2.0 in stage 5.0 (TID 506, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 2, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 3.0 in stage 5.0 (TID 507, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 4.0 in stage 5.0 (TID 508, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 4, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 5.0 in stage 5.0 (TID 509, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 5, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 6.0 in stage 5.0 (TID 510, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 7.0 in stage 5.0 (TID 511, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 7, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 8.0 in stage 5.0 (TID 512, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 8, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 9.0 in stage 5.0 (TID 513, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 9, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 10.0 in stage 5.0 (TID 514, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 10, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 11.0 in stage 5.0 (TID 515, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 11, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 BlockManagerInfo: INFO: Added broadcast_14_piece0 in memory on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:00 BlockManagerInfo: INFO: Added broadcast_14_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:00 BlockManagerInfo: INFO: Added broadcast_14_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 12.0 in stage 5.0 (TID 516, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 12, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 0.0 in stage 5.0 (TID 504) in 145 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (1/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 13.0 in stage 5.0 (TID 517, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 13, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 5.0 in stage 5.0 (TID 509) in 167 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (2/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 14.0 in stage 5.0 (TID 518, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 14, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 15.0 in stage 5.0 (TID 519, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 15, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 3.0 in stage 5.0 (TID 507) in 217 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (3/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 8.0 in stage 5.0 (TID 512) in 211 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (4/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 16.0 in stage 5.0 (TID 520, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 16, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 11.0 in stage 5.0 (TID 515) in 231 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (5/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 17.0 in stage 5.0 (TID 521, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 17, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 4.0 in stage 5.0 (TID 508) in 242 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (6/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 18.0 in stage 5.0 (TID 522, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 18, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 9.0 in stage 5.0 (TID 513) in 257 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (7/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 19.0 in stage 5.0 (TID 523, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 19, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 10.0 in stage 5.0 (TID 514) in 258 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (8/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 20.0 in stage 5.0 (TID 524, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 20, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 7.0 in stage 5.0 (TID 511) in 305 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (9/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 21.0 in stage 5.0 (TID 525, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 21, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 6.0 in stage 5.0 (TID 510) in 334 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (10/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 22.0 in stage 5.0 (TID 526, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 22, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 1.0 in stage 5.0 (TID 505) in 351 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (11/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 23.0 in stage 5.0 (TID 527, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 23, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 13.0 in stage 5.0 (TID 517) in 210 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (12/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 24.0 in stage 5.0 (TID 528, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 24, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 12.0 in stage 5.0 (TID 516) in 267 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (13/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 25.0 in stage 5.0 (TID 529, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 25, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 14.0 in stage 5.0 (TID 518) in 228 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (14/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 26.0 in stage 5.0 (TID 530, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 26, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 16.0 in stage 5.0 (TID 520) in 211 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (15/100) 2021-04-12 16:03:00 TaskSetManager: INFO: Starting task 27.0 in stage 5.0 (TID 531, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 27, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:00 TaskSetManager: INFO: Finished task 19.0 in stage 5.0 (TID 523) in 201 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (16/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 28.0 in stage 5.0 (TID 532, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 28, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 15.0 in stage 5.0 (TID 519) in 255 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (17/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 29.0 in stage 5.0 (TID 533, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 29, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 18.0 in stage 5.0 (TID 522) in 217 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (18/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 30.0 in stage 5.0 (TID 534, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 30, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 17.0 in stage 5.0 (TID 521) in 255 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (19/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 31.0 in stage 5.0 (TID 535, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 31, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 21.0 in stage 5.0 (TID 525) in 176 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (20/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 32.0 in stage 5.0 (TID 536, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 32, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 23.0 in stage 5.0 (TID 527) in 182 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (21/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 33.0 in stage 5.0 (TID 537, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 33, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 20.0 in stage 5.0 (TID 524) in 269 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (22/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 34.0 in stage 5.0 (TID 538, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 34, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 22.0 in stage 5.0 (TID 526) in 239 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (23/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 35.0 in stage 5.0 (TID 539, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 35, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 30.0 in stage 5.0 (TID 534) in 169 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (24/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 36.0 in stage 5.0 (TID 540, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 36, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 2.0 in stage 5.0 (TID 506) in 683 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (25/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 37.0 in stage 5.0 (TID 541, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 37, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 25.0 in stage 5.0 (TID 529) in 258 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (26/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 38.0 in stage 5.0 (TID 542, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 38, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 29.0 in stage 5.0 (TID 533) in 227 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (27/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 39.0 in stage 5.0 (TID 543, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 39, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 24.0 in stage 5.0 (TID 528) in 308 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (28/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 40.0 in stage 5.0 (TID 544, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 40, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 27.0 in stage 5.0 (TID 531) in 264 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (29/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 41.0 in stage 5.0 (TID 545, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 41, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 26.0 in stage 5.0 (TID 530) in 291 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (30/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 42.0 in stage 5.0 (TID 546, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 42, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 28.0 in stage 5.0 (TID 532) in 287 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (31/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 43.0 in stage 5.0 (TID 547, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 43, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 31.0 in stage 5.0 (TID 535) in 247 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (32/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 44.0 in stage 5.0 (TID 548, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 44, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 32.0 in stage 5.0 (TID 536) in 242 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (33/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 45.0 in stage 5.0 (TID 549, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 45, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 34.0 in stage 5.0 (TID 538) in 261 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (34/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 46.0 in stage 5.0 (TID 550, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 46, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 35.0 in stage 5.0 (TID 539) in 230 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (35/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 47.0 in stage 5.0 (TID 551, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 47, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 40.0 in stage 5.0 (TID 544) in 184 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (36/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 48.0 in stage 5.0 (TID 552, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 48, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 33.0 in stage 5.0 (TID 537) in 342 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (37/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 49.0 in stage 5.0 (TID 553, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 49, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 38.0 in stage 5.0 (TID 542) in 217 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (38/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 50.0 in stage 5.0 (TID 554, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 50, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 36.0 in stage 5.0 (TID 540) in 259 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (39/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 51.0 in stage 5.0 (TID 555, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 51, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 39.0 in stage 5.0 (TID 543) in 279 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (40/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 52.0 in stage 5.0 (TID 556, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 52, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 43.0 in stage 5.0 (TID 547) in 238 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (41/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 53.0 in stage 5.0 (TID 557, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 53, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 41.0 in stage 5.0 (TID 545) in 263 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (42/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 54.0 in stage 5.0 (TID 558, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 54, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 44.0 in stage 5.0 (TID 548) in 216 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (43/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 55.0 in stage 5.0 (TID 559, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 55, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 37.0 in stage 5.0 (TID 541) in 329 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (44/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 56.0 in stage 5.0 (TID 560, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 56, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 45.0 in stage 5.0 (TID 549) in 216 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (45/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 57.0 in stage 5.0 (TID 561, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 57, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 42.0 in stage 5.0 (TID 546) in 309 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (46/100) 2021-04-12 16:03:01 ExecutorAllocationManager: INFO: Requesting 3 new executors because tasks are backlogged (new desired total will be 4) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 58.0 in stage 5.0 (TID 562, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 58, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 49.0 in stage 5.0 (TID 553) in 211 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (47/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 59.0 in stage 5.0 (TID 563, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 59, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 48.0 in stage 5.0 (TID 552) in 236 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (48/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 60.0 in stage 5.0 (TID 564, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 60, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 47.0 in stage 5.0 (TID 551) in 247 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (49/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 61.0 in stage 5.0 (TID 565, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 61, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 55.0 in stage 5.0 (TID 559) in 167 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (50/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 62.0 in stage 5.0 (TID 566, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 62, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 46.0 in stage 5.0 (TID 550) in 304 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (51/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 63.0 in stage 5.0 (TID 567, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 63, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 52.0 in stage 5.0 (TID 556) in 228 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (52/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 64.0 in stage 5.0 (TID 568, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 64, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 50.0 in stage 5.0 (TID 554) in 296 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (53/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 65.0 in stage 5.0 (TID 569, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 65, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 51.0 in stage 5.0 (TID 555) in 263 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (54/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 66.0 in stage 5.0 (TID 570, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 66, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 54.0 in stage 5.0 (TID 558) in 243 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (55/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 67.0 in stage 5.0 (TID 571, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 67, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 53.0 in stage 5.0 (TID 557) in 284 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (56/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 68.0 in stage 5.0 (TID 572, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 68, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 57.0 in stage 5.0 (TID 561) in 223 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (57/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 69.0 in stage 5.0 (TID 573, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 69, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 59.0 in stage 5.0 (TID 563) in 195 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (58/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 70.0 in stage 5.0 (TID 574, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 70, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 56.0 in stage 5.0 (TID 560) in 291 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (59/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 71.0 in stage 5.0 (TID 575, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 71, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 63.0 in stage 5.0 (TID 567) in 186 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (60/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 72.0 in stage 5.0 (TID 576, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 72, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 58.0 in stage 5.0 (TID 562) in 278 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (61/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 73.0 in stage 5.0 (TID 577, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 73, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 61.0 in stage 5.0 (TID 565) in 240 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (62/100) 2021-04-12 16:03:01 TaskSetManager: INFO: Starting task 74.0 in stage 5.0 (TID 578, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 74, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:01 TaskSetManager: INFO: Finished task 67.0 in stage 5.0 (TID 571) in 187 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (63/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 75.0 in stage 5.0 (TID 579, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 75, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 68.0 in stage 5.0 (TID 572) in 192 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (64/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 76.0 in stage 5.0 (TID 580, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 76, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 69.0 in stage 5.0 (TID 573) in 140 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (65/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 77.0 in stage 5.0 (TID 581, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 77, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 60.0 in stage 5.0 (TID 564) in 359 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (66/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 78.0 in stage 5.0 (TID 582, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 78, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 64.0 in stage 5.0 (TID 568) in 285 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (67/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 79.0 in stage 5.0 (TID 583, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 79, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 66.0 in stage 5.0 (TID 570) in 272 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (68/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 80.0 in stage 5.0 (TID 584, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 80, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 65.0 in stage 5.0 (TID 569) in 278 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (69/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 81.0 in stage 5.0 (TID 585, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 81, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 70.0 in stage 5.0 (TID 574) in 184 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (70/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 82.0 in stage 5.0 (TID 586, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 82, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 71.0 in stage 5.0 (TID 575) in 133 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (71/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 83.0 in stage 5.0 (TID 587, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 83, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 62.0 in stage 5.0 (TID 566) in 348 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (72/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 84.0 in stage 5.0 (TID 588, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 84, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 73.0 in stage 5.0 (TID 577) in 194 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (73/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 85.0 in stage 5.0 (TID 589, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 85, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 72.0 in stage 5.0 (TID 576) in 252 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (74/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 86.0 in stage 5.0 (TID 590, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 86, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 83.0 in stage 5.0 (TID 587) in 150 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (75/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 87.0 in stage 5.0 (TID 591, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 87, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 77.0 in stage 5.0 (TID 581) in 192 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (76/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 88.0 in stage 5.0 (TID 592, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 88, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 80.0 in stage 5.0 (TID 584) in 182 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (77/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 89.0 in stage 5.0 (TID 593, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 89, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 79.0 in stage 5.0 (TID 583) in 207 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (78/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 90.0 in stage 5.0 (TID 594, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 90, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 81.0 in stage 5.0 (TID 585) in 221 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (79/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 91.0 in stage 5.0 (TID 595, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 91, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 74.0 in stage 5.0 (TID 578) in 302 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (80/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 92.0 in stage 5.0 (TID 596, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 92, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 76.0 in stage 5.0 (TID 580) in 296 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (81/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 93.0 in stage 5.0 (TID 597, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 93, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 84.0 in stage 5.0 (TID 588) in 194 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (82/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 94.0 in stage 5.0 (TID 598, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 94, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 82.0 in stage 5.0 (TID 586) in 285 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (83/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 95.0 in stage 5.0 (TID 599, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 95, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 75.0 in stage 5.0 (TID 579) in 351 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (84/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 96.0 in stage 5.0 (TID 600, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 96, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 86.0 in stage 5.0 (TID 590) in 212 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (85/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 97.0 in stage 5.0 (TID 601, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 97, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 85.0 in stage 5.0 (TID 589) in 261 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (86/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Marking task 78 in stage 5.0 (on berylc-w-0.us-central1-b.c.human-genetics-001.internal) as speculatable because it ran more than 363 ms 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 98.0 in stage 5.0 (TID 602, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 98, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 88.0 in stage 5.0 (TID 592) in 253 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (87/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Starting task 99.0 in stage 5.0 (TID 603, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 99, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 78.0 in stage 5.0 (TID 582) in 446 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (88/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 87.0 in stage 5.0 (TID 591) in 265 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (89/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 90.0 in stage 5.0 (TID 594) in 243 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (90/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 89.0 in stage 5.0 (TID 593) in 265 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (91/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 94.0 in stage 5.0 (TID 598) in 185 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (92/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 93.0 in stage 5.0 (TID 597) in 209 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (93/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 97.0 in stage 5.0 (TID 601) in 188 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (94/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 95.0 in stage 5.0 (TID 599) in 281 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (95/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 92.0 in stage 5.0 (TID 596) in 359 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (96/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 91.0 in stage 5.0 (TID 595) in 376 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (97/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 96.0 in stage 5.0 (TID 600) in 262 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (98/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 98.0 in stage 5.0 (TID 602) in 231 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (99/100) 2021-04-12 16:03:02 TaskSetManager: INFO: Finished task 99.0 in stage 5.0 (TID 603) in 232 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (100/100) 2021-04-12 16:03:02 YarnScheduler: INFO: Removed TaskSet 5.0, whose tasks have all completed, from pool default 2021-04-12 16:03:02 DAGScheduler: INFO: ResultStage 5 (collect at LoadVCF.scala:1915) finished in 2.203 s 2021-04-12 16:03:02 DAGScheduler: INFO: Job 5 finished: collect at LoadVCF.scala:1915, took 2.206248 s 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:02 root: INFO: encoder cache hit 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 135 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 144 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 147 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 BlockManagerInfo: INFO: Removed broadcast_11_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 40.7 KB, free: 21.7 GB) 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 142 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 150 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 131 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 148 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 129 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 139 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 149 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 138 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 141 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 145 2021-04-12 16:03:03 BlockManagerInfo: INFO: Removed broadcast_14_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:03:03 BlockManagerInfo: INFO: Removed broadcast_14_piece0 on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:03 BlockManagerInfo: INFO: Removed broadcast_14_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:03 BlockManagerInfo: INFO: Removed broadcast_14_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 137 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 143 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 126 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 134 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 136 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 133 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 140 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 146 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 127 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 130 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 132 2021-04-12 16:03:03 ContextCleaner: INFO: Cleaned accumulator 128 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: encoder cache hit 2021-04-12 16:03:03 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:03 root: INFO: timing SparkBackend.pyImportVCFs total 3.181s self 3.181s children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:04 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:04 root: INFO: timing SparkBackend.parse_value_ir total 38.729ms self 38.729ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:04 root: INFO: starting execution of query hail_query_7 of initial size 15 2021-04-12 16:03:04 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 15: (ToArray (StreamMap __uid_69 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __uid_69)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __uid_69)))) (Apply includesStart () Boolean (Ref __uid_69)) (Apply includesEnd () Boolean (Ref __uid_69))))) 2021-04-12 16:03:04 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 15: (ToArray (StreamMap __iruid_193 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_193)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_193)))) (Apply includesStart () Boolean (Ref __iruid_193)) (Apply includesEnd () Boolean (Ref __iruid_193))))) 2021-04-12 16:03:04 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 15: (ToArray (StreamMap __iruid_193 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_193)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_193)))) (Apply includesStart () Boolean (Ref __iruid_193)) (Apply includesEnd () Boolean (Ref __iruid_193))))) 2021-04-12 16:03:04 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 15: (ToArray (StreamMap __iruid_196 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_196)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_196)))) (Apply includesStart () Boolean (Ref __iruid_196)) (Apply includesEnd () Boolean (Ref __iruid_196))))) 2021-04-12 16:03:04 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 15: (ToArray (StreamMap __iruid_196 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_196)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_196)))) (Apply includesStart () Boolean (Ref __iruid_196)) (Apply includesEnd () Boolean (Ref __iruid_196))))) 2021-04-12 16:03:04 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 15: (ToArray (StreamMap __iruid_199 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_199)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_199)))) (Apply includesStart () Boolean (Ref __iruid_199)) (Apply includesEnd () Boolean (Ref __iruid_199))))) 2021-04-12 16:03:04 root: INFO: RegionPool: REPORT_THRESHOLD: 289.6K allocated (128.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:04 root: INFO: finished execution of query hail_query_7 2021-04-12 16:03:04 root: INFO: RegionPool: FREE: 417.6K allocated (256.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON total 33.687ms self 11.600ms children 22.087ms %children 65.56% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR total 5.483ms self 0.008ms children 5.475ms %children 99.85% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.008ms self 0.008ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation total 5.446ms self 1.202ms children 4.244ms %children 77.94% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize total 4.244ms self 0.051ms children 4.194ms %children 98.81% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.113ms self 0.113ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.089ms self 0.089ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.149ms self 0.149ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.632ms self 0.632ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.084ms self 0.084ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.560ms self 0.560ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.276ms self 0.276ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.061ms self 0.061ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.102ms self 0.102ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.378ms self 0.378ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.048ms self 0.048ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.424ms self 0.424ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.286ms self 0.286ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.060ms self 0.060ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.091ms self 0.091ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.379ms self 0.379ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.045ms self 0.045ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.417ms self 0.417ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.021ms self 0.021ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable total 0.079ms self 0.004ms children 0.075ms %children 95.29% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.004ms self 0.004ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/LoweringTransformation total 0.059ms self 0.059ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.012ms self 0.012ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable total 4.932ms self 0.006ms children 4.926ms %children 99.88% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.003ms self 0.003ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation total 4.912ms self 1.173ms children 3.739ms %children 76.12% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize total 3.739ms self 0.043ms children 3.696ms %children 98.86% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.117ms self 0.117ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.067ms self 0.067ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.107ms self 0.107ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.411ms self 0.411ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.051ms self 0.051ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.523ms self 0.523ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.213ms self 0.213ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.055ms self 0.055ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.097ms self 0.097ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.355ms self 0.355ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.079ms self 0.079ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.430ms self 0.430ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.204ms self 0.204ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.054ms self 0.054ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.090ms self 0.090ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.385ms self 0.385ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.048ms self 0.048ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.412ms self 0.412ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.010ms self 0.010ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable total 0.079ms self 0.003ms children 0.076ms %children 95.71% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.014ms self 0.014ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/LoweringTransformation total 0.043ms self 0.043ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.020ms self 0.020ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable total 4.989ms self 0.008ms children 4.982ms %children 99.85% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.003ms self 0.003ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation total 4.967ms self 1.370ms children 3.597ms %children 72.42% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize total 3.597ms self 0.042ms children 3.555ms %children 98.84% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.082ms self 0.082ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.063ms self 0.063ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.109ms self 0.109ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.389ms self 0.389ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.056ms self 0.056ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.445ms self 0.445ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.247ms self 0.247ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.056ms self 0.056ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.089ms self 0.089ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.442ms self 0.442ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.049ms self 0.049ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.380ms self 0.380ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.200ms self 0.200ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.053ms self 0.053ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.089ms self 0.089ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.368ms self 0.368ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.068ms self 0.068ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.371ms self 0.371ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.011ms self 0.011ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/Compile total 3.048ms self 3.048ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/InitializeCompiledFunction total 0.277ms self 0.277ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/RunCompiledFunction total 1.457ms self 1.457ms children 0.000ms %children 0.00% 2021-04-12 16:03:04 root: INFO: timing SparkBackend.executeJSON/convertRegionValueToAnnotation total 1.743ms self 1.743ms children 0.000ms %children 0.00% 2021-04-12 16:03:05 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:05 MemoryStore: INFO: Block broadcast_15 stored as values in memory (estimated size 555.2 KB, free 21.7 GB) 2021-04-12 16:03:05 MemoryStore: INFO: Block broadcast_15_piece0 stored as bytes in memory (estimated size 40.7 KB, free 21.7 GB) 2021-04-12 16:03:05 BlockManagerInfo: INFO: Added broadcast_15_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 40.7 KB, free: 21.7 GB) 2021-04-12 16:03:05 SparkContext: INFO: Created broadcast 15 from broadcast at SparkBackend.scala:259 2021-04-12 16:03:06 SparkContext: INFO: Starting job: collect at LoadVCF.scala:1915 2021-04-12 16:03:06 DAGScheduler: INFO: Got job 6 (collect at LoadVCF.scala:1915) with 100 output partitions 2021-04-12 16:03:06 DAGScheduler: INFO: Final stage: ResultStage 6 (collect at LoadVCF.scala:1915) 2021-04-12 16:03:06 DAGScheduler: INFO: Parents of final stage: List() 2021-04-12 16:03:06 DAGScheduler: INFO: Missing parents: List() 2021-04-12 16:03:06 DAGScheduler: INFO: Submitting ResultStage 6 (MapPartitionsRDD[2413] at map at LoadVCF.scala:1894), which has no missing parents 2021-04-12 16:03:06 MemoryStore: INFO: Block broadcast_16 stored as values in memory (estimated size 11.6 KB, free 21.7 GB) 2021-04-12 16:03:06 MemoryStore: INFO: Block broadcast_16_piece0 stored as bytes in memory (estimated size 6.0 KB, free 21.7 GB) 2021-04-12 16:03:06 BlockManagerInfo: INFO: Added broadcast_16_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:03:06 SparkContext: INFO: Created broadcast 16 from broadcast at DAGScheduler.scala:1163 2021-04-12 16:03:06 DAGScheduler: INFO: Submitting 100 missing tasks from ResultStage 6 (MapPartitionsRDD[2413] at map at LoadVCF.scala:1894) (first 15 tasks are for partitions Vector(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)) 2021-04-12 16:03:06 YarnScheduler: INFO: Adding task set 6.0 with 100 tasks 2021-04-12 16:03:06 FairSchedulableBuilder: INFO: Added task set TaskSet_6.0 tasks to pool default 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 0.0 in stage 6.0 (TID 604, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 0, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 1.0 in stage 6.0 (TID 605, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 1, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 2.0 in stage 6.0 (TID 606, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 2, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 3.0 in stage 6.0 (TID 607, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 4.0 in stage 6.0 (TID 608, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 4, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 5.0 in stage 6.0 (TID 609, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 5, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 6.0 in stage 6.0 (TID 610, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 7.0 in stage 6.0 (TID 611, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 7, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 8.0 in stage 6.0 (TID 612, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 8, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 9.0 in stage 6.0 (TID 613, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 9, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 10.0 in stage 6.0 (TID 614, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 10, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 11.0 in stage 6.0 (TID 615, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 11, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 BlockManagerInfo: INFO: Added broadcast_16_piece0 in memory on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:06 BlockManagerInfo: INFO: Added broadcast_16_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:06 BlockManagerInfo: INFO: Added broadcast_16_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 12.0 in stage 6.0 (TID 616, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 12, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 0.0 in stage 6.0 (TID 604) in 204 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (1/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 13.0 in stage 6.0 (TID 617, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 13, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 8.0 in stage 6.0 (TID 612) in 328 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (2/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 14.0 in stage 6.0 (TID 618, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 14, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 6.0 in stage 6.0 (TID 610) in 361 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (3/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 15.0 in stage 6.0 (TID 619, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 15, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 5.0 in stage 6.0 (TID 609) in 366 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (4/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 16.0 in stage 6.0 (TID 620, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 16, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 1.0 in stage 6.0 (TID 605) in 376 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (5/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 17.0 in stage 6.0 (TID 621, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 17, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 9.0 in stage 6.0 (TID 613) in 403 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (6/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 18.0 in stage 6.0 (TID 622, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 18, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 2.0 in stage 6.0 (TID 606) in 412 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (7/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 19.0 in stage 6.0 (TID 623, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 19, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 12.0 in stage 6.0 (TID 616) in 219 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (8/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 20.0 in stage 6.0 (TID 624, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 20, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 3.0 in stage 6.0 (TID 607) in 423 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (9/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 21.0 in stage 6.0 (TID 625, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 21, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 4.0 in stage 6.0 (TID 608) in 432 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (10/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 22.0 in stage 6.0 (TID 626, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 22, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 10.0 in stage 6.0 (TID 614) in 438 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (11/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 23.0 in stage 6.0 (TID 627, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 23, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 7.0 in stage 6.0 (TID 611) in 467 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (12/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 24.0 in stage 6.0 (TID 628, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 24, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 11.0 in stage 6.0 (TID 615) in 478 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (13/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 25.0 in stage 6.0 (TID 629, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 25, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 13.0 in stage 6.0 (TID 617) in 221 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (14/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 26.0 in stage 6.0 (TID 630, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 26, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 19.0 in stage 6.0 (TID 623) in 156 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (15/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 27.0 in stage 6.0 (TID 631, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 27, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 15.0 in stage 6.0 (TID 619) in 232 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (16/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 28.0 in stage 6.0 (TID 632, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 28, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 14.0 in stage 6.0 (TID 618) in 255 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (17/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 29.0 in stage 6.0 (TID 633, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 29, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 16.0 in stage 6.0 (TID 620) in 258 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (18/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 30.0 in stage 6.0 (TID 634, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 30, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 18.0 in stage 6.0 (TID 622) in 238 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (19/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 31.0 in stage 6.0 (TID 635, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 31, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 23.0 in stage 6.0 (TID 627) in 195 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (20/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 32.0 in stage 6.0 (TID 636, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 32, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 24.0 in stage 6.0 (TID 628) in 198 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (21/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 33.0 in stage 6.0 (TID 637, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 33, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 20.0 in stage 6.0 (TID 624) in 274 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (22/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 34.0 in stage 6.0 (TID 638, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 34, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 17.0 in stage 6.0 (TID 621) in 290 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (23/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 35.0 in stage 6.0 (TID 639, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 35, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 21.0 in stage 6.0 (TID 625) in 288 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (24/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 36.0 in stage 6.0 (TID 640, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 36, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 22.0 in stage 6.0 (TID 626) in 309 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (25/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 37.0 in stage 6.0 (TID 641, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 37, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 25.0 in stage 6.0 (TID 629) in 233 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (26/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 38.0 in stage 6.0 (TID 642, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 38, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 27.0 in stage 6.0 (TID 631) in 210 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (27/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 39.0 in stage 6.0 (TID 643, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 39, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 26.0 in stage 6.0 (TID 630) in 248 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (28/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 40.0 in stage 6.0 (TID 644, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 40, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 30.0 in stage 6.0 (TID 634) in 179 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (29/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 41.0 in stage 6.0 (TID 645, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 41, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 28.0 in stage 6.0 (TID 632) in 252 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (30/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 42.0 in stage 6.0 (TID 646, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 42, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 33.0 in stage 6.0 (TID 637) in 225 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (31/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 43.0 in stage 6.0 (TID 647, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 43, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 35.0 in stage 6.0 (TID 639) in 211 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (32/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 44.0 in stage 6.0 (TID 648, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 44, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 29.0 in stage 6.0 (TID 633) in 333 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (33/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 45.0 in stage 6.0 (TID 649, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 45, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 40.0 in stage 6.0 (TID 644) in 142 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (34/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 46.0 in stage 6.0 (TID 650, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 46, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 31.0 in stage 6.0 (TID 635) in 308 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (35/100) 2021-04-12 16:03:06 TaskSetManager: INFO: Starting task 47.0 in stage 6.0 (TID 651, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 47, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:06 TaskSetManager: INFO: Finished task 38.0 in stage 6.0 (TID 642) in 168 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (36/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 48.0 in stage 6.0 (TID 652, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 48, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 36.0 in stage 6.0 (TID 640) in 236 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (37/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 49.0 in stage 6.0 (TID 653, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 49, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 32.0 in stage 6.0 (TID 636) in 321 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (38/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 50.0 in stage 6.0 (TID 654, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 50, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 34.0 in stage 6.0 (TID 638) in 311 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (39/100) 2021-04-12 16:03:07 ExecutorAllocationManager: INFO: Requesting 3 new executors because tasks are backlogged (new desired total will be 4) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 51.0 in stage 6.0 (TID 655, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 51, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 37.0 in stage 6.0 (TID 641) in 245 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (40/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 52.0 in stage 6.0 (TID 656, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 52, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 45.0 in stage 6.0 (TID 649) in 135 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (41/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 53.0 in stage 6.0 (TID 657, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 53, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 39.0 in stage 6.0 (TID 643) in 294 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (42/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 54.0 in stage 6.0 (TID 658, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 54, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 42.0 in stage 6.0 (TID 646) in 196 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (43/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 55.0 in stage 6.0 (TID 659, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 55, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 43.0 in stage 6.0 (TID 647) in 203 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (44/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 56.0 in stage 6.0 (TID 660, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 56, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 41.0 in stage 6.0 (TID 645) in 281 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (45/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 57.0 in stage 6.0 (TID 661, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 57, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 44.0 in stage 6.0 (TID 648) in 220 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (46/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 58.0 in stage 6.0 (TID 662, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 58, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 49.0 in stage 6.0 (TID 653) in 205 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (47/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 59.0 in stage 6.0 (TID 663, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 59, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 50.0 in stage 6.0 (TID 654) in 215 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (48/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 60.0 in stage 6.0 (TID 664, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 60, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 46.0 in stage 6.0 (TID 650) in 255 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (49/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 61.0 in stage 6.0 (TID 665, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 61, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 47.0 in stage 6.0 (TID 651) in 266 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (50/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 62.0 in stage 6.0 (TID 666, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 62, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 48.0 in stage 6.0 (TID 652) in 284 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (51/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 63.0 in stage 6.0 (TID 667, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 63, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 52.0 in stage 6.0 (TID 656) in 251 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (52/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 64.0 in stage 6.0 (TID 668, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 64, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 51.0 in stage 6.0 (TID 655) in 335 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (53/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 65.0 in stage 6.0 (TID 669, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 65, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 55.0 in stage 6.0 (TID 659) in 241 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (54/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 66.0 in stage 6.0 (TID 670, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 66, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 56.0 in stage 6.0 (TID 660) in 251 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (55/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 67.0 in stage 6.0 (TID 671, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 67, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 54.0 in stage 6.0 (TID 658) in 310 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (56/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 68.0 in stage 6.0 (TID 672, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 68, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 57.0 in stage 6.0 (TID 661) in 246 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (57/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 69.0 in stage 6.0 (TID 673, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 69, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 53.0 in stage 6.0 (TID 657) in 336 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (58/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 70.0 in stage 6.0 (TID 674, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 70, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 59.0 in stage 6.0 (TID 663) in 231 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (59/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 71.0 in stage 6.0 (TID 675, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 71, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 61.0 in stage 6.0 (TID 665) in 232 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (60/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 72.0 in stage 6.0 (TID 676, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 72, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 58.0 in stage 6.0 (TID 662) in 289 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (61/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 73.0 in stage 6.0 (TID 677, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 73, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 65.0 in stage 6.0 (TID 669) in 127 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (62/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 74.0 in stage 6.0 (TID 678, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 74, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 60.0 in stage 6.0 (TID 664) in 288 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (63/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 75.0 in stage 6.0 (TID 679, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 75, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 67.0 in stage 6.0 (TID 671) in 125 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (64/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 76.0 in stage 6.0 (TID 680, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 76, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 63.0 in stage 6.0 (TID 667) in 223 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (65/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 77.0 in stage 6.0 (TID 681, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 77, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 62.0 in stage 6.0 (TID 666) in 342 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (66/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 78.0 in stage 6.0 (TID 682, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 78, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 70.0 in stage 6.0 (TID 674) in 180 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (67/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 79.0 in stage 6.0 (TID 683, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 79, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 64.0 in stage 6.0 (TID 668) in 293 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (68/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 80.0 in stage 6.0 (TID 684, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 80, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 68.0 in stage 6.0 (TID 672) in 232 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (69/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 81.0 in stage 6.0 (TID 685, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 81, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 69.0 in stage 6.0 (TID 673) in 234 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (70/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 82.0 in stage 6.0 (TID 686, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 82, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 76.0 in stage 6.0 (TID 680) in 160 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (71/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 83.0 in stage 6.0 (TID 687, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 83, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 73.0 in stage 6.0 (TID 677) in 237 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (72/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 84.0 in stage 6.0 (TID 688, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 84, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 71.0 in stage 6.0 (TID 675) in 266 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (73/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 85.0 in stage 6.0 (TID 689, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 85, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 74.0 in stage 6.0 (TID 678) in 228 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (74/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 86.0 in stage 6.0 (TID 690, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 86, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 72.0 in stage 6.0 (TID 676) in 249 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (75/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 87.0 in stage 6.0 (TID 691, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 87, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 66.0 in stage 6.0 (TID 670) in 359 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (76/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 88.0 in stage 6.0 (TID 692, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 88, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 75.0 in stage 6.0 (TID 679) in 245 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (77/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 89.0 in stage 6.0 (TID 693, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 89, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 78.0 in stage 6.0 (TID 682) in 197 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (78/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 90.0 in stage 6.0 (TID 694, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 90, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 79.0 in stage 6.0 (TID 683) in 179 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (79/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 91.0 in stage 6.0 (TID 695, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 91, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 80.0 in stage 6.0 (TID 684) in 193 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (80/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 92.0 in stage 6.0 (TID 696, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 92, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 81.0 in stage 6.0 (TID 685) in 218 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (81/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 93.0 in stage 6.0 (TID 697, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 93, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 83.0 in stage 6.0 (TID 687) in 225 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (82/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 94.0 in stage 6.0 (TID 698, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 94, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 84.0 in stage 6.0 (TID 688) in 228 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (83/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Starting task 95.0 in stage 6.0 (TID 699, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 95, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:07 TaskSetManager: INFO: Finished task 82.0 in stage 6.0 (TID 686) in 240 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (84/100) 2021-04-12 16:03:07 TaskSetManager: INFO: Marking task 77 in stage 6.0 (on berylc-w-0.us-central1-b.c.human-genetics-001.internal) as speculatable because it ran more than 368 ms 2021-04-12 16:03:08 TaskSetManager: INFO: Starting task 96.0 in stage 6.0 (TID 700, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 96, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 85.0 in stage 6.0 (TID 689) in 252 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (85/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Starting task 97.0 in stage 6.0 (TID 701, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 97, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 90.0 in stage 6.0 (TID 694) in 160 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (86/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Starting task 98.0 in stage 6.0 (TID 702, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 98, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 86.0 in stage 6.0 (TID 690) in 266 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (87/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Starting task 99.0 in stage 6.0 (TID 703, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 99, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 77.0 in stage 6.0 (TID 681) in 402 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (88/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 87.0 in stage 6.0 (TID 691) in 274 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (89/100) 2021-04-12 16:03:08 ExecutorAllocationManager: INFO: Requesting 0 new executor because tasks are backlogged (new desired total will be 5) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 88.0 in stage 6.0 (TID 692) in 299 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (90/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 89.0 in stage 6.0 (TID 693) in 266 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (91/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 92.0 in stage 6.0 (TID 696) in 230 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (92/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 98.0 in stage 6.0 (TID 702) in 138 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (93/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 91.0 in stage 6.0 (TID 695) in 319 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (94/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 93.0 in stage 6.0 (TID 697) in 219 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (95/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 94.0 in stage 6.0 (TID 698) in 221 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (96/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 97.0 in stage 6.0 (TID 701) in 246 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (97/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 95.0 in stage 6.0 (TID 699) in 282 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (98/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 96.0 in stage 6.0 (TID 700) in 318 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (99/100) 2021-04-12 16:03:08 TaskSetManager: INFO: Marking task 99 in stage 6.0 (on berylc-w-0.us-central1-b.c.human-genetics-001.internal) as speculatable because it ran more than 369 ms 2021-04-12 16:03:08 TaskSetManager: INFO: Starting task 99.1 in stage 6.0 (TID 704, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 99, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:08 TaskSetManager: INFO: Killing attempt 1 for task 99.1 in stage 6.0 (TID 704) on berylc-w-1.us-central1-b.c.human-genetics-001.internal as the attempt 0 succeeded on berylc-w-0.us-central1-b.c.human-genetics-001.internal 2021-04-12 16:03:08 TaskSetManager: INFO: Finished task 99.0 in stage 6.0 (TID 703) in 405 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (100/100) 2021-04-12 16:03:08 DAGScheduler: INFO: ResultStage 6 (collect at LoadVCF.scala:1915) finished in 2.423 s 2021-04-12 16:03:08 DAGScheduler: INFO: Job 6 finished: collect at LoadVCF.scala:1915, took 2.425245 s 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 TaskSetManager: WARN: Lost task 99.1 in stage 6.0 (TID 704, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1): TaskKilled (another attempt succeeded) 2021-04-12 16:03:08 TaskSetManager: INFO: Task 99.1 in stage 6.0 (TID 704) failed, but the task will not be re-executed (either because the task failed with a shuffle data fetch failure, so the previous stage needs to be re-run, or because a different copy of the task has already succeeded). 2021-04-12 16:03:08 YarnScheduler: INFO: Removed TaskSet 6.0, whose tasks have all completed, from pool default 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 158 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 174 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 155 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 161 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 164 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 153 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 162 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 154 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 172 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 170 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 163 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 166 2021-04-12 16:03:08 BlockManagerInfo: INFO: Removed broadcast_13_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 40.7 KB, free: 21.7 GB) 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 165 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 169 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 157 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 159 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 156 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 175 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 160 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 152 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 173 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 168 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 171 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 BlockManagerInfo: INFO: Removed broadcast_16_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:08 BlockManagerInfo: INFO: Removed broadcast_16_piece0 on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:08 BlockManagerInfo: INFO: Removed broadcast_16_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:08 BlockManagerInfo: INFO: Removed broadcast_16_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 167 2021-04-12 16:03:08 ContextCleaner: INFO: Cleaned accumulator 151 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:08 root: INFO: encoder cache hit 2021-04-12 16:03:09 root: INFO: encoder cache hit 2021-04-12 16:03:09 root: INFO: encoder cache hit 2021-04-12 16:03:09 root: INFO: encoder cache hit 2021-04-12 16:03:09 root: INFO: encoder cache hit 2021-04-12 16:03:09 root: INFO: encoder cache hit 2021-04-12 16:03:09 root: INFO: encoder cache hit 2021-04-12 16:03:09 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:09 root: INFO: timing SparkBackend.pyImportVCFs total 3.352s self 3.352s children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:10 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:10 root: INFO: timing SparkBackend.parse_value_ir total 40.294ms self 40.294ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:10 root: INFO: starting execution of query hail_query_8 of initial size 15 2021-04-12 16:03:10 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 15: (ToArray (StreamMap __uid_73 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __uid_73)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __uid_73)))) (Apply includesStart () Boolean (Ref __uid_73)) (Apply includesEnd () Boolean (Ref __uid_73))))) 2021-04-12 16:03:10 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 15: (ToArray (StreamMap __iruid_202 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_202)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_202)))) (Apply includesStart () Boolean (Ref __iruid_202)) (Apply includesEnd () Boolean (Ref __iruid_202))))) 2021-04-12 16:03:10 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 15: (ToArray (StreamMap __iruid_202 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_202)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_202)))) (Apply includesStart () Boolean (Ref __iruid_202)) (Apply includesEnd () Boolean (Ref __iruid_202))))) 2021-04-12 16:03:10 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 15: (ToArray (StreamMap __iruid_205 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_205)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_205)))) (Apply includesStart () Boolean (Ref __iruid_205)) (Apply includesEnd () Boolean (Ref __iruid_205))))) 2021-04-12 16:03:10 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 15: (ToArray (StreamMap __iruid_205 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_205)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_205)))) (Apply includesStart () Boolean (Ref __iruid_205)) (Apply includesEnd () Boolean (Ref __iruid_205))))) 2021-04-12 16:03:10 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 15: (ToArray (StreamMap __iruid_208 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_208)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_208)))) (Apply includesStart () Boolean (Ref __iruid_208)) (Apply includesEnd () Boolean (Ref __iruid_208))))) 2021-04-12 16:03:10 root: INFO: RegionPool: REPORT_THRESHOLD: 289.6K allocated (128.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:10 root: INFO: finished execution of query hail_query_8 2021-04-12 16:03:10 root: INFO: RegionPool: FREE: 417.6K allocated (256.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON total 36.764ms self 11.770ms children 24.995ms %children 67.99% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR total 6.356ms self 0.009ms children 6.347ms %children 99.86% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.009ms self 0.009ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation total 6.329ms self 1.019ms children 5.310ms %children 83.90% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize total 5.310ms self 0.072ms children 5.238ms %children 98.64% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.124ms self 0.124ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.086ms self 0.086ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.142ms self 0.142ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.466ms self 0.466ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.057ms self 0.057ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.629ms self 0.629ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.371ms self 0.371ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.131ms self 0.131ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.134ms self 0.134ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.677ms self 0.677ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.074ms self 0.074ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.846ms self 0.846ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.301ms self 0.301ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.088ms self 0.088ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.091ms self 0.091ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.546ms self 0.546ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.051ms self 0.051ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.425ms self 0.425ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.010ms self 0.010ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable total 0.078ms self 0.006ms children 0.072ms %children 92.65% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.005ms self 0.005ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/LoweringTransformation total 0.052ms self 0.052ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.015ms self 0.015ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable total 5.982ms self 0.007ms children 5.975ms %children 99.88% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.003ms self 0.003ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation total 5.958ms self 1.818ms children 4.140ms %children 69.49% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize total 4.140ms self 0.048ms children 4.093ms %children 98.84% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.135ms self 0.135ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.071ms self 0.071ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.094ms self 0.094ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.534ms self 0.534ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.043ms self 0.043ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.503ms self 0.503ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.226ms self 0.226ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.054ms self 0.054ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.087ms self 0.087ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.316ms self 0.316ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.040ms self 0.040ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.388ms self 0.388ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.197ms self 0.197ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.052ms self 0.052ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.145ms self 0.145ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.462ms self 0.462ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.098ms self 0.098ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.647ms self 0.647ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.014ms self 0.014ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable total 0.144ms self 0.006ms children 0.138ms %children 95.76% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.019ms self 0.019ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/LoweringTransformation total 0.058ms self 0.058ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.061ms self 0.061ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable total 5.871ms self 0.007ms children 5.864ms %children 99.88% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.008ms self 0.008ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation total 5.847ms self 1.076ms children 4.771ms %children 81.59% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize total 4.771ms self 0.054ms children 4.716ms %children 98.86% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.147ms self 0.147ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.107ms self 0.107ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.140ms self 0.140ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.717ms self 0.717ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.070ms self 0.070ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.990ms self 0.990ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.330ms self 0.330ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.071ms self 0.071ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.092ms self 0.092ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.361ms self 0.361ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.041ms self 0.041ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.442ms self 0.442ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.258ms self 0.258ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.070ms self 0.070ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.087ms self 0.087ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.309ms self 0.309ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.037ms self 0.037ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.449ms self 0.449ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.009ms self 0.009ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/Compile total 2.967ms self 2.967ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/InitializeCompiledFunction total 0.266ms self 0.266ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/RunCompiledFunction total 1.475ms self 1.475ms children 0.000ms %children 0.00% 2021-04-12 16:03:10 root: INFO: timing SparkBackend.executeJSON/convertRegionValueToAnnotation total 1.856ms self 1.856ms children 0.000ms %children 0.00% 2021-04-12 16:03:11 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:11 MemoryStore: INFO: Block broadcast_17 stored as values in memory (estimated size 555.3 KB, free 21.7 GB) 2021-04-12 16:03:11 MemoryStore: INFO: Block broadcast_17_piece0 stored as bytes in memory (estimated size 40.8 KB, free 21.7 GB) 2021-04-12 16:03:11 BlockManagerInfo: INFO: Added broadcast_17_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 40.8 KB, free: 21.7 GB) 2021-04-12 16:03:11 SparkContext: INFO: Created broadcast 17 from broadcast at SparkBackend.scala:259 2021-04-12 16:03:11 SparkContext: INFO: Starting job: collect at LoadVCF.scala:1915 2021-04-12 16:03:11 DAGScheduler: INFO: Got job 7 (collect at LoadVCF.scala:1915) with 100 output partitions 2021-04-12 16:03:11 DAGScheduler: INFO: Final stage: ResultStage 7 (collect at LoadVCF.scala:1915) 2021-04-12 16:03:11 DAGScheduler: INFO: Parents of final stage: List() 2021-04-12 16:03:11 DAGScheduler: INFO: Missing parents: List() 2021-04-12 16:03:11 DAGScheduler: INFO: Submitting ResultStage 7 (MapPartitionsRDD[2815] at map at LoadVCF.scala:1894), which has no missing parents 2021-04-12 16:03:11 MemoryStore: INFO: Block broadcast_18 stored as values in memory (estimated size 11.6 KB, free 21.7 GB) 2021-04-12 16:03:11 MemoryStore: INFO: Block broadcast_18_piece0 stored as bytes in memory (estimated size 6.0 KB, free 21.7 GB) 2021-04-12 16:03:11 BlockManagerInfo: INFO: Added broadcast_18_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:03:11 SparkContext: INFO: Created broadcast 18 from broadcast at DAGScheduler.scala:1163 2021-04-12 16:03:11 DAGScheduler: INFO: Submitting 100 missing tasks from ResultStage 7 (MapPartitionsRDD[2815] at map at LoadVCF.scala:1894) (first 15 tasks are for partitions Vector(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)) 2021-04-12 16:03:11 YarnScheduler: INFO: Adding task set 7.0 with 100 tasks 2021-04-12 16:03:11 FairSchedulableBuilder: INFO: Added task set TaskSet_7.0 tasks to pool default 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 0.0 in stage 7.0 (TID 705, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 0, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 1.0 in stage 7.0 (TID 706, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 1, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 2.0 in stage 7.0 (TID 707, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 2, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 3.0 in stage 7.0 (TID 708, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 3, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 4.0 in stage 7.0 (TID 709, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 4, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 5.0 in stage 7.0 (TID 710, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 5, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 6.0 in stage 7.0 (TID 711, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 6, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 7.0 in stage 7.0 (TID 712, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 8.0 in stage 7.0 (TID 713, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 8, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 9.0 in stage 7.0 (TID 714, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 9, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 10.0 in stage 7.0 (TID 715, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 10, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 TaskSetManager: INFO: Starting task 11.0 in stage 7.0 (TID 716, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 11, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:11 BlockManagerInfo: INFO: Added broadcast_18_piece0 in memory on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:11 BlockManagerInfo: INFO: Added broadcast_18_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:11 BlockManagerInfo: INFO: Added broadcast_18_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:11 ExecutorAllocationManager: INFO: Requesting 3 new executors because tasks are backlogged (new desired total will be 4) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 12.0 in stage 7.0 (TID 717, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 12, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 0.0 in stage 7.0 (TID 705) in 153 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (1/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 13.0 in stage 7.0 (TID 718, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 13, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 11.0 in stage 7.0 (TID 716) in 238 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (2/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 14.0 in stage 7.0 (TID 719, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 14, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 2.0 in stage 7.0 (TID 707) in 264 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (3/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 15.0 in stage 7.0 (TID 720, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 15, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 1.0 in stage 7.0 (TID 706) in 273 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (4/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 16.0 in stage 7.0 (TID 721, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 16, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 9.0 in stage 7.0 (TID 714) in 272 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (5/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 17.0 in stage 7.0 (TID 722, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 17, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 5.0 in stage 7.0 (TID 710) in 296 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (6/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 18.0 in stage 7.0 (TID 723, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 18, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 4.0 in stage 7.0 (TID 709) in 299 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (7/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 19.0 in stage 7.0 (TID 724, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 19, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 10.0 in stage 7.0 (TID 715) in 309 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (8/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 20.0 in stage 7.0 (TID 725, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 20, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 8.0 in stage 7.0 (TID 713) in 319 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (9/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 21.0 in stage 7.0 (TID 726, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 21, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 7.0 in stage 7.0 (TID 712) in 341 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (10/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 22.0 in stage 7.0 (TID 727, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 22, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 12.0 in stage 7.0 (TID 717) in 218 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (11/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 23.0 in stage 7.0 (TID 728, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 23, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 6.0 in stage 7.0 (TID 711) in 373 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (12/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 24.0 in stage 7.0 (TID 729, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 24, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 3.0 in stage 7.0 (TID 708) in 387 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (13/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 25.0 in stage 7.0 (TID 730, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 25, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 20.0 in stage 7.0 (TID 725) in 144 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (14/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 26.0 in stage 7.0 (TID 731, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 26, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 14.0 in stage 7.0 (TID 719) in 208 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (15/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 27.0 in stage 7.0 (TID 732, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 27, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 13.0 in stage 7.0 (TID 718) in 249 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (16/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 28.0 in stage 7.0 (TID 733, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 28, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 29.0 in stage 7.0 (TID 734, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 29, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 16.0 in stage 7.0 (TID 721) in 237 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (17/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 15.0 in stage 7.0 (TID 720) in 243 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (18/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 30.0 in stage 7.0 (TID 735, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 30, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 17.0 in stage 7.0 (TID 722) in 231 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (19/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 31.0 in stage 7.0 (TID 736, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 31, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 19.0 in stage 7.0 (TID 724) in 237 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (20/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 32.0 in stage 7.0 (TID 737, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 32, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 18.0 in stage 7.0 (TID 723) in 261 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (21/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 33.0 in stage 7.0 (TID 738, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 33, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 23.0 in stage 7.0 (TID 728) in 198 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (22/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 34.0 in stage 7.0 (TID 739, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 34, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 24.0 in stage 7.0 (TID 729) in 257 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (23/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 35.0 in stage 7.0 (TID 740, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 35, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 21.0 in stage 7.0 (TID 726) in 306 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (24/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 36.0 in stage 7.0 (TID 741, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 36, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 22.0 in stage 7.0 (TID 727) in 298 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (25/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 37.0 in stage 7.0 (TID 742, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 37, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 26.0 in stage 7.0 (TID 731) in 205 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (26/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 38.0 in stage 7.0 (TID 743, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 38, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 25.0 in stage 7.0 (TID 730) in 227 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (27/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 39.0 in stage 7.0 (TID 744, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 39, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 30.0 in stage 7.0 (TID 735) in 193 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (28/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 40.0 in stage 7.0 (TID 745, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 40, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 27.0 in stage 7.0 (TID 732) in 259 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (29/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 41.0 in stage 7.0 (TID 746, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 41, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 29.0 in stage 7.0 (TID 734) in 257 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (30/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 42.0 in stage 7.0 (TID 747, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 42, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 31.0 in stage 7.0 (TID 736) in 238 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (31/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 43.0 in stage 7.0 (TID 748, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 43, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 34.0 in stage 7.0 (TID 739) in 181 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (32/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 44.0 in stage 7.0 (TID 749, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 44, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 32.0 in stage 7.0 (TID 737) in 290 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (33/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 45.0 in stage 7.0 (TID 750, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 45, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 33.0 in stage 7.0 (TID 738) in 292 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (34/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 46.0 in stage 7.0 (TID 751, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 46, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 28.0 in stage 7.0 (TID 733) in 355 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (35/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 47.0 in stage 7.0 (TID 752, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 47, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 36.0 in stage 7.0 (TID 741) in 231 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (36/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 48.0 in stage 7.0 (TID 753, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 48, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 40.0 in stage 7.0 (TID 745) in 163 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (37/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 49.0 in stage 7.0 (TID 754, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 49, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 39.0 in stage 7.0 (TID 744) in 203 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (38/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 50.0 in stage 7.0 (TID 755, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 50, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 35.0 in stage 7.0 (TID 740) in 276 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (39/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 51.0 in stage 7.0 (TID 756, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 51, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 38.0 in stage 7.0 (TID 743) in 249 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (40/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 52.0 in stage 7.0 (TID 757, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 52, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 37.0 in stage 7.0 (TID 742) in 313 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (41/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 53.0 in stage 7.0 (TID 758, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 53, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 43.0 in stage 7.0 (TID 748) in 174 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (42/100) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 54.0 in stage 7.0 (TID 759, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 54, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 44.0 in stage 7.0 (TID 749) in 151 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (43/100) 2021-04-12 16:03:12 ExecutorAllocationManager: INFO: Requesting 1 new executor because tasks are backlogged (new desired total will be 5) 2021-04-12 16:03:12 TaskSetManager: INFO: Starting task 55.0 in stage 7.0 (TID 760, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 55, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:12 TaskSetManager: INFO: Finished task 41.0 in stage 7.0 (TID 746) in 310 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (44/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 56.0 in stage 7.0 (TID 761, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 56, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 42.0 in stage 7.0 (TID 747) in 294 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (45/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 57.0 in stage 7.0 (TID 762, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 57, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 47.0 in stage 7.0 (TID 752) in 193 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (46/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 58.0 in stage 7.0 (TID 763, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 58, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 48.0 in stage 7.0 (TID 753) in 242 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (47/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 59.0 in stage 7.0 (TID 764, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 59, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 50.0 in stage 7.0 (TID 755) in 239 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (48/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 60.0 in stage 7.0 (TID 765, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 60, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 45.0 in stage 7.0 (TID 750) in 307 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (49/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 61.0 in stage 7.0 (TID 766, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 61, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 52.0 in stage 7.0 (TID 757) in 200 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (50/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 62.0 in stage 7.0 (TID 767, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 62, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 51.0 in stage 7.0 (TID 756) in 268 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (51/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 63.0 in stage 7.0 (TID 768, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 63, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 49.0 in stage 7.0 (TID 754) in 303 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (52/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 64.0 in stage 7.0 (TID 769, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 64, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 53.0 in stage 7.0 (TID 758) in 242 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (53/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 65.0 in stage 7.0 (TID 770, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 65, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 46.0 in stage 7.0 (TID 751) in 376 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (54/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 66.0 in stage 7.0 (TID 771, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 66, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 57.0 in stage 7.0 (TID 762) in 161 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (55/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 67.0 in stage 7.0 (TID 772, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 67, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 59.0 in stage 7.0 (TID 764) in 142 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (56/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 68.0 in stage 7.0 (TID 773, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 68, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 56.0 in stage 7.0 (TID 761) in 236 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (57/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 69.0 in stage 7.0 (TID 774, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 69, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 54.0 in stage 7.0 (TID 759) in 321 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (58/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 70.0 in stage 7.0 (TID 775, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 70, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 55.0 in stage 7.0 (TID 760) in 276 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (59/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 71.0 in stage 7.0 (TID 776, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 71, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 58.0 in stage 7.0 (TID 763) in 252 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (60/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 72.0 in stage 7.0 (TID 777, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 72, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 63.0 in stage 7.0 (TID 768) in 220 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (61/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 73.0 in stage 7.0 (TID 778, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 73, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 62.0 in stage 7.0 (TID 767) in 244 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (62/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 74.0 in stage 7.0 (TID 779, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 74, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 61.0 in stage 7.0 (TID 766) in 275 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (63/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 75.0 in stage 7.0 (TID 780, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 75, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 68.0 in stage 7.0 (TID 773) in 147 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (64/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 76.0 in stage 7.0 (TID 781, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 76, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 65.0 in stage 7.0 (TID 770) in 243 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (65/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 77.0 in stage 7.0 (TID 782, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 77, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 64.0 in stage 7.0 (TID 769) in 278 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (66/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 78.0 in stage 7.0 (TID 783, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 78, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 66.0 in stage 7.0 (TID 771) in 274 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (67/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 79.0 in stage 7.0 (TID 784, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 79, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 67.0 in stage 7.0 (TID 772) in 221 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (68/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 80.0 in stage 7.0 (TID 785, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 80, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 69.0 in stage 7.0 (TID 774) in 217 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (69/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 81.0 in stage 7.0 (TID 786, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 81, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 60.0 in stage 7.0 (TID 765) in 384 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (70/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 82.0 in stage 7.0 (TID 787, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 82, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 74.0 in stage 7.0 (TID 779) in 135 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (71/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 83.0 in stage 7.0 (TID 788, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 83, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 70.0 in stage 7.0 (TID 775) in 252 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (72/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 84.0 in stage 7.0 (TID 789, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 84, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 71.0 in stage 7.0 (TID 776) in 207 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (73/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 85.0 in stage 7.0 (TID 790, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 85, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 76.0 in stage 7.0 (TID 781) in 182 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (74/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 86.0 in stage 7.0 (TID 791, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 86, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 75.0 in stage 7.0 (TID 780) in 209 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (75/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 87.0 in stage 7.0 (TID 792, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 87, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 73.0 in stage 7.0 (TID 778) in 237 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (76/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 88.0 in stage 7.0 (TID 793, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 88, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 72.0 in stage 7.0 (TID 777) in 265 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (77/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 89.0 in stage 7.0 (TID 794, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 89, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 77.0 in stage 7.0 (TID 782) in 241 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (78/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 90.0 in stage 7.0 (TID 795, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 90, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 79.0 in stage 7.0 (TID 784) in 234 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (79/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 91.0 in stage 7.0 (TID 796, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 91, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 78.0 in stage 7.0 (TID 783) in 243 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (80/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 92.0 in stage 7.0 (TID 797, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 92, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 80.0 in stage 7.0 (TID 785) in 229 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (81/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 93.0 in stage 7.0 (TID 798, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 93, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 81.0 in stage 7.0 (TID 786) in 229 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (82/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 94.0 in stage 7.0 (TID 799, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 94, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 84.0 in stage 7.0 (TID 789) in 177 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (83/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 95.0 in stage 7.0 (TID 800, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 95, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 86.0 in stage 7.0 (TID 791) in 164 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (84/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 96.0 in stage 7.0 (TID 801, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 96, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 82.0 in stage 7.0 (TID 787) in 252 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (85/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 97.0 in stage 7.0 (TID 802, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 97, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 83.0 in stage 7.0 (TID 788) in 263 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (86/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 98.0 in stage 7.0 (TID 803, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 98, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 85.0 in stage 7.0 (TID 790) in 212 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (87/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Starting task 99.0 in stage 7.0 (TID 804, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 99, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 87.0 in stage 7.0 (TID 792) in 199 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (88/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 88.0 in stage 7.0 (TID 793) in 216 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (89/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 91.0 in stage 7.0 (TID 796) in 227 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (90/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 93.0 in stage 7.0 (TID 798) in 219 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (91/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 94.0 in stage 7.0 (TID 799) in 215 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (92/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 90.0 in stage 7.0 (TID 795) in 258 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (93/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 98.0 in stage 7.0 (TID 803) in 148 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (94/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 92.0 in stage 7.0 (TID 797) in 262 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (95/100) 2021-04-12 16:03:13 TaskSetManager: INFO: Finished task 89.0 in stage 7.0 (TID 794) in 302 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (96/100) 2021-04-12 16:03:14 TaskSetManager: INFO: Finished task 96.0 in stage 7.0 (TID 801) in 245 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (97/100) 2021-04-12 16:03:14 TaskSetManager: INFO: Finished task 97.0 in stage 7.0 (TID 802) in 225 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (98/100) 2021-04-12 16:03:14 TaskSetManager: INFO: Finished task 95.0 in stage 7.0 (TID 800) in 265 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (99/100) 2021-04-12 16:03:14 TaskSetManager: INFO: Finished task 99.0 in stage 7.0 (TID 804) in 219 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (100/100) 2021-04-12 16:03:14 YarnScheduler: INFO: Removed TaskSet 7.0, whose tasks have all completed, from pool default 2021-04-12 16:03:14 DAGScheduler: INFO: ResultStage 7 (collect at LoadVCF.scala:1915) finished in 2.108 s 2021-04-12 16:03:14 DAGScheduler: INFO: Job 7 finished: collect at LoadVCF.scala:1915, took 2.109747 s 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 182 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 189 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 190 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 195 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 192 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 183 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 191 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 197 2021-04-12 16:03:14 BlockManagerInfo: INFO: Removed broadcast_18_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:03:14 BlockManagerInfo: INFO: Removed broadcast_18_piece0 on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:14 BlockManagerInfo: INFO: Removed broadcast_18_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:14 BlockManagerInfo: INFO: Removed broadcast_18_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 180 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 199 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 186 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 187 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 200 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 179 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 177 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 184 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 178 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 194 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 196 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 185 2021-04-12 16:03:14 BlockManagerInfo: INFO: Removed broadcast_15_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 40.7 KB, free: 21.7 GB) 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 181 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 198 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 176 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 188 2021-04-12 16:03:14 ContextCleaner: INFO: Cleaned accumulator 193 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: encoder cache hit 2021-04-12 16:03:14 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:14 root: INFO: timing SparkBackend.pyImportVCFs total 3.163s self 3.163s children 0.000ms %children 0.00% 2021-04-12 16:03:15 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:15 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:15 root: INFO: timing SparkBackend.parse_value_ir total 38.730ms self 38.730ms children 0.000ms %children 0.00% 2021-04-12 16:03:15 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:15 root: INFO: starting execution of query hail_query_9 of initial size 15 2021-04-12 16:03:15 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 15: (ToArray (StreamMap __uid_77 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __uid_77)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __uid_77)))) (Apply includesStart () Boolean (Ref __uid_77)) (Apply includesEnd () Boolean (Ref __uid_77))))) 2021-04-12 16:03:15 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 15: (ToArray (StreamMap __iruid_211 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_211)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_211)))) (Apply includesStart () Boolean (Ref __iruid_211)) (Apply includesEnd () Boolean (Ref __iruid_211))))) 2021-04-12 16:03:15 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 15: (ToArray (StreamMap __iruid_211 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_211)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_211)))) (Apply includesStart () Boolean (Ref __iruid_211)) (Apply includesEnd () Boolean (Ref __iruid_211))))) 2021-04-12 16:03:16 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 15: (ToArray (StreamMap __iruid_214 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_214)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_214)))) (Apply includesStart () Boolean (Ref __iruid_214)) (Apply includesEnd () Boolean (Ref __iruid_214))))) 2021-04-12 16:03:16 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 15: (ToArray (StreamMap __iruid_214 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_214)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_214)))) (Apply includesStart () Boolean (Ref __iruid_214)) (Apply includesEnd () Boolean (Ref __iruid_214))))) 2021-04-12 16:03:16 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 15: (ToArray (StreamMap __iruid_217 (ToStream False (Literal Array[Interval[Locus(GRCh38)]] )) (ApplySpecial Interval () Interval[Struct{locus:Locus(GRCh38)}] (MakeStruct (locus (ApplySpecial start () Locus(GRCh38) (Ref __iruid_217)))) (MakeStruct (locus (ApplySpecial end () Locus(GRCh38) (Ref __iruid_217)))) (Apply includesStart () Boolean (Ref __iruid_217)) (Apply includesEnd () Boolean (Ref __iruid_217))))) 2021-04-12 16:03:16 root: INFO: RegionPool: REPORT_THRESHOLD: 289.6K allocated (128.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:16 root: INFO: finished execution of query hail_query_9 2021-04-12 16:03:16 root: INFO: RegionPool: FREE: 417.6K allocated (256.0K blocks / 161.6K chunks), regions.size = 2, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON total 32.259ms self 11.717ms children 20.542ms %children 63.68% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR total 5.161ms self 0.009ms children 5.152ms %children 99.83% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.009ms self 0.009ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation total 5.129ms self 1.076ms children 4.053ms %children 79.01% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize total 4.053ms self 0.049ms children 4.004ms %children 98.79% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.100ms self 0.100ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.086ms self 0.086ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.119ms self 0.119ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.385ms self 0.385ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.043ms self 0.043ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.641ms self 0.641ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.265ms self 0.265ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.063ms self 0.063ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.087ms self 0.087ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.335ms self 0.335ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.040ms self 0.040ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.442ms self 0.442ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.265ms self 0.265ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.055ms self 0.055ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.102ms self 0.102ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 0.498ms self 0.498ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.055ms self 0.055ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 0.424ms self 0.424ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, initial IR/Verify total 0.014ms self 0.014ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable total 0.092ms self 0.003ms children 0.089ms %children 96.49% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.007ms self 0.007ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/LoweringTransformation total 0.058ms self 0.058ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/LowerMatrixToTable/Verify total 0.024ms self 0.024ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable total 4.389ms self 0.006ms children 4.382ms %children 99.85% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.004ms self 0.004ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation total 4.368ms self 0.968ms children 3.399ms %children 77.83% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize total 3.399ms self 0.084ms children 3.315ms %children 97.52% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.082ms self 0.082ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.079ms self 0.079ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.086ms self 0.086ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.358ms self 0.358ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.039ms self 0.039ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.452ms self 0.452ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.184ms self 0.184ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.060ms self 0.060ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.082ms self 0.082ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.318ms self 0.318ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.037ms self 0.037ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.417ms self 0.417ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.230ms self 0.230ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.085ms self 0.085ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.103ms self 0.103ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 0.316ms self 0.316ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.036ms self 0.036ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 0.352ms self 0.352ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.010ms self 0.010ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable total 0.104ms self 0.004ms children 0.100ms %children 96.25% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.014ms self 0.014ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/LoweringTransformation total 0.048ms self 0.048ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/InterpretNonCompilable/Verify total 0.038ms self 0.038ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable total 4.427ms self 0.013ms children 4.414ms %children 99.71% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.004ms self 0.004ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation total 4.401ms self 1.032ms children 3.369ms %children 76.55% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize total 3.369ms self 0.035ms children 3.334ms %children 98.96% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.093ms self 0.093ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.067ms self 0.067ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.087ms self 0.087ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.419ms self 0.419ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.038ms self 0.038ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.548ms self 0.548ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.187ms self 0.187ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.051ms self 0.051ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.079ms self 0.079ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.318ms self 0.318ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.039ms self 0.039ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.354ms self 0.354ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.176ms self 0.176ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.051ms self 0.051ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.075ms self 0.075ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.352ms self 0.352ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.034ms self 0.034ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 0.364ms self 0.364ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.009ms self 0.009ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/Compile total 2.926ms self 2.926ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/InitializeCompiledFunction total 0.267ms self 0.267ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/RunCompiledFunction total 1.471ms self 1.471ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: timing SparkBackend.executeJSON/convertRegionValueToAnnotation total 1.706ms self 1.706ms children 0.000ms %children 0.00% 2021-04-12 16:03:16 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:17 MemoryStore: INFO: Block broadcast_19 stored as values in memory (estimated size 555.2 KB, free 21.7 GB) 2021-04-12 16:03:17 MemoryStore: INFO: Block broadcast_19_piece0 stored as bytes in memory (estimated size 40.8 KB, free 21.7 GB) 2021-04-12 16:03:17 BlockManagerInfo: INFO: Added broadcast_19_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 40.8 KB, free: 21.7 GB) 2021-04-12 16:03:17 SparkContext: INFO: Created broadcast 19 from broadcast at SparkBackend.scala:259 2021-04-12 16:03:17 SparkContext: INFO: Starting job: collect at LoadVCF.scala:1915 2021-04-12 16:03:17 DAGScheduler: INFO: Got job 8 (collect at LoadVCF.scala:1915) with 66 output partitions 2021-04-12 16:03:17 DAGScheduler: INFO: Final stage: ResultStage 8 (collect at LoadVCF.scala:1915) 2021-04-12 16:03:17 DAGScheduler: INFO: Parents of final stage: List() 2021-04-12 16:03:17 DAGScheduler: INFO: Missing parents: List() 2021-04-12 16:03:17 DAGScheduler: INFO: Submitting ResultStage 8 (MapPartitionsRDD[3217] at map at LoadVCF.scala:1894), which has no missing parents 2021-04-12 16:03:17 MemoryStore: INFO: Block broadcast_20 stored as values in memory (estimated size 11.6 KB, free 21.7 GB) 2021-04-12 16:03:17 MemoryStore: INFO: Block broadcast_20_piece0 stored as bytes in memory (estimated size 6.0 KB, free 21.7 GB) 2021-04-12 16:03:17 BlockManagerInfo: INFO: Added broadcast_20_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:03:17 SparkContext: INFO: Created broadcast 20 from broadcast at DAGScheduler.scala:1163 2021-04-12 16:03:17 DAGScheduler: INFO: Submitting 66 missing tasks from ResultStage 8 (MapPartitionsRDD[3217] at map at LoadVCF.scala:1894) (first 15 tasks are for partitions Vector(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)) 2021-04-12 16:03:17 YarnScheduler: INFO: Adding task set 8.0 with 66 tasks 2021-04-12 16:03:17 FairSchedulableBuilder: INFO: Added task set TaskSet_8.0 tasks to pool default 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 0.0 in stage 8.0 (TID 805, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 0, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 1.0 in stage 8.0 (TID 806, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 1, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 2.0 in stage 8.0 (TID 807, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 2, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 3.0 in stage 8.0 (TID 808, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 3, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 4.0 in stage 8.0 (TID 809, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 4, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 5.0 in stage 8.0 (TID 810, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 5, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 6.0 in stage 8.0 (TID 811, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 6, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 7.0 in stage 8.0 (TID 812, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 8.0 in stage 8.0 (TID 813, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 8, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 9.0 in stage 8.0 (TID 814, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 9, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 10.0 in stage 8.0 (TID 815, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 10, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 11.0 in stage 8.0 (TID 816, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 11, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 BlockManagerInfo: INFO: Added broadcast_20_piece0 in memory on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:17 BlockManagerInfo: INFO: Added broadcast_20_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:17 BlockManagerInfo: INFO: Added broadcast_20_piece0 in memory on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 12.0 in stage 8.0 (TID 817, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 12, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 0.0 in stage 8.0 (TID 805) in 87 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (1/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 13.0 in stage 8.0 (TID 818, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 13, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 1.0 in stage 8.0 (TID 806) in 176 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (2/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 14.0 in stage 8.0 (TID 819, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 14, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 11.0 in stage 8.0 (TID 816) in 248 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (3/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 15.0 in stage 8.0 (TID 820, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 15, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 3.0 in stage 8.0 (TID 808) in 259 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (4/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 16.0 in stage 8.0 (TID 821, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 16, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 6.0 in stage 8.0 (TID 811) in 259 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (5/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 17.0 in stage 8.0 (TID 822, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 17, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 7.0 in stage 8.0 (TID 812) in 263 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (6/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 18.0 in stage 8.0 (TID 823, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 18, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 2.0 in stage 8.0 (TID 807) in 274 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (7/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 19.0 in stage 8.0 (TID 824, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 19, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 5.0 in stage 8.0 (TID 810) in 279 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (8/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 20.0 in stage 8.0 (TID 825, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 20, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 9.0 in stage 8.0 (TID 814) in 284 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (9/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 21.0 in stage 8.0 (TID 826, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 21, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 8.0 in stage 8.0 (TID 813) in 299 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (10/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 22.0 in stage 8.0 (TID 827, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 22, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 10.0 in stage 8.0 (TID 815) in 307 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (11/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 23.0 in stage 8.0 (TID 828, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 23, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 12.0 in stage 8.0 (TID 817) in 269 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (12/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 24.0 in stage 8.0 (TID 829, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 24, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 4.0 in stage 8.0 (TID 809) in 379 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (13/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 25.0 in stage 8.0 (TID 830, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 25, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 15.0 in stage 8.0 (TID 820) in 152 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (14/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 26.0 in stage 8.0 (TID 831, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 26, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 19.0 in stage 8.0 (TID 824) in 169 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (15/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 27.0 in stage 8.0 (TID 832, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 27, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 13.0 in stage 8.0 (TID 818) in 324 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (16/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 28.0 in stage 8.0 (TID 833, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 28, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 20.0 in stage 8.0 (TID 825) in 218 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (17/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 29.0 in stage 8.0 (TID 834, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 29, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 22.0 in stage 8.0 (TID 827) in 208 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (18/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 30.0 in stage 8.0 (TID 835, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 30, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 18.0 in stage 8.0 (TID 823) in 252 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (19/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 31.0 in stage 8.0 (TID 836, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 31, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 17.0 in stage 8.0 (TID 822) in 262 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (20/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 32.0 in stage 8.0 (TID 837, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 32, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 16.0 in stage 8.0 (TID 821) in 278 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (21/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 33.0 in stage 8.0 (TID 838, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 33, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 21.0 in stage 8.0 (TID 826) in 237 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (22/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 34.0 in stage 8.0 (TID 839, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 34, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 23.0 in stage 8.0 (TID 828) in 210 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (23/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 35.0 in stage 8.0 (TID 840, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 35, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 14.0 in stage 8.0 (TID 819) in 350 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (24/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 36.0 in stage 8.0 (TID 841, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 36, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 25.0 in stage 8.0 (TID 830) in 209 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (25/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 37.0 in stage 8.0 (TID 842, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 37, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 24.0 in stage 8.0 (TID 829) in 241 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (26/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 38.0 in stage 8.0 (TID 843, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 38, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 26.0 in stage 8.0 (TID 831) in 204 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (27/66) 2021-04-12 16:03:17 TaskSetManager: INFO: Starting task 39.0 in stage 8.0 (TID 844, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 39, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:17 TaskSetManager: INFO: Finished task 27.0 in stage 8.0 (TID 832) in 171 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (28/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 40.0 in stage 8.0 (TID 845, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 40, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 28.0 in stage 8.0 (TID 833) in 207 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (29/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 41.0 in stage 8.0 (TID 846, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 41, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 29.0 in stage 8.0 (TID 834) in 195 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (30/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 42.0 in stage 8.0 (TID 847, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 42, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 30.0 in stage 8.0 (TID 835) in 255 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (31/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 43.0 in stage 8.0 (TID 848, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 43, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 34.0 in stage 8.0 (TID 839) in 271 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (32/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 44.0 in stage 8.0 (TID 849, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 44, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 38.0 in stage 8.0 (TID 843) in 223 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (33/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 45.0 in stage 8.0 (TID 850, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 45, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 46.0 in stage 8.0 (TID 851, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 46, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 33.0 in stage 8.0 (TID 838) in 347 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (34/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 40.0 in stage 8.0 (TID 845) in 177 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (35/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 47.0 in stage 8.0 (TID 852, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 47, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 42.0 in stage 8.0 (TID 847) in 117 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (36/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 48.0 in stage 8.0 (TID 853, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 48, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 37.0 in stage 8.0 (TID 842) in 289 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (37/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 49.0 in stage 8.0 (TID 854, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 49, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 31.0 in stage 8.0 (TID 836) in 394 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (38/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 50.0 in stage 8.0 (TID 855, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 50, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 41.0 in stage 8.0 (TID 846) in 212 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (39/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 51.0 in stage 8.0 (TID 856, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 51, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 32.0 in stage 8.0 (TID 837) in 395 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (40/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 52.0 in stage 8.0 (TID 857, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 52, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 35.0 in stage 8.0 (TID 840) in 336 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (41/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 53.0 in stage 8.0 (TID 858, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 53, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 39.0 in stage 8.0 (TID 844) in 318 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (42/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 54.0 in stage 8.0 (TID 859, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 54, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 36.0 in stage 8.0 (TID 841) in 381 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (43/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 55.0 in stage 8.0 (TID 860, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 55, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 50.0 in stage 8.0 (TID 855) in 116 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (44/66) 2021-04-12 16:03:18 ExecutorAllocationManager: INFO: Requesting 3 new executors because tasks are backlogged (new desired total will be 4) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 56.0 in stage 8.0 (TID 861, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 56, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 51.0 in stage 8.0 (TID 856) in 153 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (45/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 57.0 in stage 8.0 (TID 862, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 57, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 44.0 in stage 8.0 (TID 849) in 227 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (46/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 58.0 in stage 8.0 (TID 863, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 58, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 43.0 in stage 8.0 (TID 848) in 281 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (47/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 59.0 in stage 8.0 (TID 864, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 59, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 45.0 in stage 8.0 (TID 850) in 233 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (48/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 60.0 in stage 8.0 (TID 865, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 60, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 47.0 in stage 8.0 (TID 852) in 235 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (49/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 61.0 in stage 8.0 (TID 866, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 61, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 49.0 in stage 8.0 (TID 854) in 230 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (50/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 62.0 in stage 8.0 (TID 867, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 3, partition 62, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 46.0 in stage 8.0 (TID 851) in 270 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (51/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 63.0 in stage 8.0 (TID 868, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 63, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 48.0 in stage 8.0 (TID 853) in 263 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (52/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 64.0 in stage 8.0 (TID 869, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 64, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 53.0 in stage 8.0 (TID 858) in 240 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (53/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Starting task 65.0 in stage 8.0 (TID 870, berylc-w-0.us-central1-b.c.human-genetics-001.internal, executor 2, partition 65, PROCESS_LOCAL, 7888 bytes) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 52.0 in stage 8.0 (TID 857) in 296 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (54/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 62.0 in stage 8.0 (TID 867) in 108 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (55/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 55.0 in stage 8.0 (TID 860) in 255 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (56/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 54.0 in stage 8.0 (TID 859) in 308 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (57/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 58.0 in stage 8.0 (TID 863) in 222 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (58/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 59.0 in stage 8.0 (TID 864) in 215 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (59/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 60.0 in stage 8.0 (TID 865) in 230 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (60/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 56.0 in stage 8.0 (TID 861) in 281 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 3) (61/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 61.0 in stage 8.0 (TID 866) in 226 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (62/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 57.0 in stage 8.0 (TID 862) in 300 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (63/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 65.0 in stage 8.0 (TID 870) in 206 ms on berylc-w-0.us-central1-b.c.human-genetics-001.internal (executor 2) (64/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 64.0 in stage 8.0 (TID 869) in 244 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (65/66) 2021-04-12 16:03:18 TaskSetManager: INFO: Finished task 63.0 in stage 8.0 (TID 868) in 325 ms on berylc-w-1.us-central1-b.c.human-genetics-001.internal (executor 1) (66/66) 2021-04-12 16:03:18 YarnScheduler: INFO: Removed TaskSet 8.0, whose tasks have all completed, from pool default 2021-04-12 16:03:18 DAGScheduler: INFO: ResultStage 8 (collect at LoadVCF.scala:1915) finished in 1.503 s 2021-04-12 16:03:18 DAGScheduler: INFO: Job 8 finished: collect at LoadVCF.scala:1915, took 1.504941 s 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:18 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: encoder cache hit 2021-04-12 16:03:19 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:19 root: INFO: timing SparkBackend.pyImportVCFs total 2.239s self 2.239s children 0.000ms %children 0.00% 2021-04-12 16:03:20 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 214 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 203 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 224 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 222 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 225 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 202 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 205 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 220 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 218 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 221 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 208 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 206 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 216 2021-04-12 16:03:20 BlockManagerInfo: INFO: Removed broadcast_20_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 6.0 KB, free: 21.7 GB) 2021-04-12 16:03:20 BlockManagerInfo: INFO: Removed broadcast_20_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:45495 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:20 BlockManagerInfo: INFO: Removed broadcast_20_piece0 on berylc-w-0.us-central1-b.c.human-genetics-001.internal:34853 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:20 BlockManagerInfo: INFO: Removed broadcast_20_piece0 on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 in memory (size: 6.0 KB, free: 5.6 GB) 2021-04-12 16:03:20 BlockManagerInfo: INFO: Removed broadcast_19_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 40.8 KB, free: 21.7 GB) 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 213 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 212 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 201 2021-04-12 16:03:20 BlockManagerInfo: INFO: Removed broadcast_17_piece0 on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 in memory (size: 40.8 KB, free: 21.7 GB) 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 210 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 209 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 223 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 204 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 215 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 211 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 217 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 207 2021-04-12 16:03:20 ContextCleaner: INFO: Cleaned accumulator 219 2021-04-12 16:03:22 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:03:22 root: INFO: timing SparkBackend.parse_value_ir total 2.204s self 2.204s children 0.000ms %children 0.00% 2021-04-12 16:03:22 root: INFO: RegionPool: initialized for thread 19: Thread-6 2021-04-12 16:03:22 root: INFO: starting execution of query hail_query_10 of initial size 4538 2021-04-12 16:03:22 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 4538: (MatrixMultiWrite "{\"name\":\"MatrixNativeMultiWriter\",\"prefix\":\"gs://human-genetics-berylc/ALS/answer_als_hail/tmp//combiner-temporary/85c800d4-96ca-49be-8ec2-bf59e9fa388e/_phase1_job1/\",\"overwrite\":true,\"stageLocally\":false}" (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () 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Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (SelectFields (__cols) (InsertFields (SelectFields (g) (Ref global)) None (__cols (ToArray (StreamFlatMap __uid_48 (ToStream False (ToArray (StreamMap __uid_46 (ToStream False (GetField g (Ref global))) (GetField __cols (Ref __uid_46))))) (ToStream False (Ref __uid_48))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (SelectFields (__cols) (InsertFields (SelectFields (g) (Ref global)) None (__cols (ToArray (StreamFlatMap __uid_52 (ToStream False (ToArray (StreamMap __uid_50 (ToStream False (GetField g (Ref global))) (GetField __cols (Ref __uid_50))))) (ToStream False (Ref __uid_52))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (SelectFields (__cols) (InsertFields (SelectFields (g) (Ref global)) None (__cols (ToArray (StreamFlatMap __uid_56 (ToStream False (ToArray (StreamMap __uid_54 (ToStream False (GetField g (Ref global))) (GetField __cols (Ref __uid_54))))) (ToStream False (Ref __uid_56))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (SelectFields (__cols) (InsertFields (SelectFields (g) (Ref global)) None (__cols (ToArray (StreamFlatMap __uid_60 (ToStream False (ToArray (StreamMap __uid_58 (ToStream False (GetField g (Ref global))) (GetField __cols (Ref __uid_58))))) (ToStream False (Ref __uid_60))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (SelectFields (__cols) (InsertFields (SelectFields (g) (Ref global)) None (__cols (ToArray (StreamFlatMap __uid_64 (ToStream False (ToArray (StreamMap __uid_62 (ToStream False (GetField g (Ref global))) (GetField __cols (Ref __uid_62))))) (ToStream False (Ref __uid_64))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (SelectFields (__cols) (InsertFields (SelectFields (g) (Ref global)) None (__cols (ToArray (StreamFlatMap __uid_68 (ToStream False (ToArray (StreamMap __uid_66 (ToStream False (GetField g (Ref global))) (GetField __cols (Ref __uid_66))))) (ToStream False (Ref __uid_68))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (SelectFields (__cols) (InsertFields (SelectFields (g) (Ref global)) None (__cols (ToArray (StreamFlatMap __uid_72 (ToStream False (ToArray (StreamMap __uid_70 (ToStream False (GetField g (Ref global))) (GetField __cols (Ref __uid_70))))) (ToStream False (Ref __uid_72))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (SelectFields (__cols) (InsertFields (SelectFields (g) (Ref global)) None (__cols (ToArray (StreamFlatMap __uid_76 (ToStream False (ToArray (StreamMap __uid_74 (ToStream False (GetField g (Ref global))) (GetField __cols (Ref __uid_74))))) (ToStream False (Ref __uid_76))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (SelectFields (__cols) (InsertFields (SelectFields (g) (Ref global)) None (__cols (ToArray (StreamFlatMap __uid_80 (ToStream False (ToArray (StreamMap __uid_78 (ToStream False (GetField g (Ref global))) (GetField __cols (Ref __uid_78))))) (ToStream False (Ref __uid_80)))))))))) 2021-04-12 16:03:34 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 4493: (MatrixMultiWrite "{\"name\":\"MatrixNativeMultiWriter\",\"prefix\":\"gs://human-genetics-berylc/ALS/answer_als_hail/tmp//combiner-temporary/85c800d4-96ca-49be-8ec2-bf59e9fa388e/_phase1_job1/\",\"overwrite\":true,\"stageLocally\":false}" (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_124831 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_124831))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_126137 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_126137))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_127443 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_127443))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_128749 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_128749))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_130055 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_130055))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_131361 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_131361))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_132667 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_132667))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_133973 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_133973))))))))) (CastTableToMatrix __entries __cols (s) (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (CastMatrixToTable "__entries" "__cols" (MatrixLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_134837 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_134837)))))))))) 2021-04-12 16:03:35 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 7253: (TableMultiWrite "{\"name\":\"WrappedMatrixNativeMultiWriter\",\"writer\":{\"name\":\"MatrixNativeMultiWriter\",\"prefix\":\"gs://human-genetics-berylc/ALS/answer_als_hail/tmp//combiner-temporary/85c800d4-96ca-49be-8ec2-bf59e9fa388e/_phase1_job1/\",\"overwrite\":true,\"stageLocally\":false},\"colKey\":[\"s\"]}" (TableRename ("__entries") ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_124831 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_124831)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_126137 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_126137)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_127443 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_127443)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_128749 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_128749)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_130055 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_130055)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_131361 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_131361)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_132667 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_132667)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_133973 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_133973)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableMapRows (TableLiteral) (SelectFields (locus alleles rsid qual filters info `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_134837 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_134837)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row)))))) 2021-04-12 16:03:46 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 4655: (TableMultiWrite "{\"name\":\"WrappedMatrixNativeMultiWriter\",\"writer\":{\"name\":\"MatrixNativeMultiWriter\",\"prefix\":\"gs://human-genetics-berylc/ALS/answer_als_hail/tmp//combiner-temporary/85c800d4-96ca-49be-8ec2-bf59e9fa388e/_phase1_job1/\",\"overwrite\":true,\"stageLocally\":false},\"colKey\":[\"s\"]}" (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_270745 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_270745)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_272051 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_272051)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_273357 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_273357)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_274663 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_274663)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_275969 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_275969)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_277275 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_277275)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_278581 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_278581)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_279887 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_279887)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row))))) (TableRename ("__entries") ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__cols") ("__cols") (TableMapRows (TableMapGlobals (TableMapRows (TableMultiWayZipJoin "data" "g" (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! 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[877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row))) (TableMapRows (TableRename ( "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") ("__entries") ("__cols") ("__cols") (TableLiteral)) (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row)))) (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (Ref row) (Ref global))) (InsertFields (SelectFields () (Ref global)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_280751 (ToStream False (GetField g (Ref global))) (ToStream False (GetField __cols (Ref __iruid_280751)))))))) (If (IsNA (GetField __entries (Ref row))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (Ref row))) (ArrayLen (GetField __cols (Ref global)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (Ref row)))))) 2021-04-12 16:03:46 root: INFO: interpreting non compilable node: TableMultiWrite 2021-04-12 16:03:46 root: INFO: decoder cache miss (0 hits, 1 misses, 0.000 2021-04-12 16:03:46 root: INFO: instruction count: 3: __C39etypeDecode. 2021-04-12 16:03:46 root: INFO: instruction count: 5: __C39etypeDecode.apply 2021-04-12 16:03:46 root: INFO: instruction count: 23: __C39etypeDecode.__m40DECODE_r_struct_of_r_array_of_r_struct_of_r_binaryENDEND_TO_r_tuple_of_r_array_of_r_tuple_of_r_stringENDEND 2021-04-12 16:03:46 root: INFO: instruction count: 64: __C39etypeDecode.__m41INPLACE_DECODE_r_array_of_r_struct_of_r_binaryEND_TO_r_array_of_r_tuple_of_r_stringEND 2021-04-12 16:03:46 root: INFO: instruction count: 15: __C39etypeDecode.__m42INPLACE_DECODE_r_struct_of_r_binaryEND_TO_r_tuple_of_r_stringEND 2021-04-12 16:03:46 root: INFO: instruction count: 33: __C39etypeDecode.__m43INPLACE_DECODE_r_binary_TO_r_string 2021-04-12 16:03:46 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 5: (Coalesce (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:46 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 5: (Coalesce (ApplyIR __uid_4 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:46 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 296: (Coalesce (Let __iruid_303405 (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1) (Let __cse_1 (GetField alleles (Ref __iruid_303405)) (Let __cse_2 (GetField END (GetField info (Ref __iruid_303405))) (Let __uid_7 (ApplyComparisonOp EQ (Let __iruid_303418 (Ref __cse_1) (Let __iruid_303419 (I32 -1) (Let __iruid_303420 (Str " File \"/t...") (ArrayRef (Ref __iruid_303418) (If (ApplyComparisonOp LT (Ref __iruid_303419) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303418)) (Ref __iruid_303419)) (Ref __iruid_303419)) (Ref __iruid_303420))))) (Str "")) (Let __uid_6 (ArrayLen (CastToArray (Ref __cse_1))) (MakeStruct (locus (GetField locus (Ref __iruid_303405))) (alleles (If (Ref __uid_7) (Let __iruid_303406 (GetField alleles (Ref __iruid_303405)) (Let __iruid_303407 (I32 -1) (If (IsNA (Ref __iruid_303406)) (Ref __iruid_303406) (ToArray (StreamMap __iruid_303408 (StreamRange False (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_303407) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303406)) (Ref __iruid_303407)) (If (ApplyComparisonOp LT (Ref __iruid_303407) (ArrayLen (Ref __iruid_303406))) (Ref __iruid_303407) (ArrayLen (Ref __iruid_303406)))) (I32 1)) (ArrayRef (Ref __iruid_303406) (Ref __iruid_303408) (Str ""))))))) (GetField alleles (Ref __iruid_303405)))) (rsid (GetField rsid (Ref __iruid_303405))) (__entries (ToArray (StreamMap __uid_8 (ToStream False (GetField __entries (Ref __iruid_303405))) (MakeStruct (LA (ToArray (StreamRange False (I32 0) (ApplyBinaryPrimOp Subtract (Ref __uid_6) (If (Ref __uid_7) (I32 1) (I32 0))) (I32 1)))) (LGT (If (ApplyComparisonOp LT (Apply unphasedDiploidGtIndex () Int32 (GetField GT (Ref __uid_8))) (Apply triangle () Int32 (ApplyBinaryPrimOp Subtract (Ref __uid_6) (Apply toInt32 () Int32 (Ref __uid_7))))) (GetField GT (Ref __uid_8)) (If (ApplyComparisonOp LT (Apply unphasedDiploidGtIndex () Int32 (GetField GT (Ref __uid_8))) (Apply triangle () Int32 (Ref __uid_6))) (NA Call) (Die Call 1 (Apply concat () String (Apply concat () String (Apply concat () String (Str "invalid GT ") (Apply str () String (GetField GT (Ref __uid_8)))) (Str " at site ")) (Apply str () String (GetField locus (Ref __iruid_303405)))))))) (LAD (If (Ref __uid_7) (Let __iruid_303409 (GetField AD (Ref __uid_8)) (Let __iruid_303410 (I32 -1) (If (IsNA (Ref __iruid_303409)) (Ref __iruid_303409) (ToArray (StreamMap __iruid_303411 (StreamRange False (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_303410) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303409)) (Ref __iruid_303410)) (If (ApplyComparisonOp LT (Ref __iruid_303410) (ArrayLen (Ref __iruid_303409))) (Ref __iruid_303410) (ArrayLen (Ref __iruid_303409)))) (I32 1)) (ArrayRef (Ref __iruid_303409) (Ref __iruid_303411) (Str ""))))))) (GetField AD (Ref __uid_8)))) (LPGT (GetField PGT (Ref __uid_8))) (LPL (If (Ref __uid_7) (If (ApplyComparisonOp GT (Ref __uid_6) (I32 2)) (Let __iruid_303412 (GetField PL (Ref __uid_8)) (Let __iruid_303413 (ApplyUnaryPrimOp Negate (Ref __uid_6)) (If (IsNA (Ref __iruid_303412)) (Ref __iruid_303412) (ToArray (StreamMap __iruid_303414 (StreamRange False (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_303413) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303412)) (Ref __iruid_303413)) (If (ApplyComparisonOp LT (Ref __iruid_303413) (ArrayLen (Ref __iruid_303412))) (Ref __iruid_303413) (ArrayLen (Ref __iruid_303412)))) (I32 1)) (ArrayRef (Ref __iruid_303412) (Ref __iruid_303414) (Str ""))))))) (NA Array[Int32])) (If (ApplyComparisonOp GT (Ref __uid_6) (I32 1)) (GetField PL (Ref __uid_8)) (NA Array[Int32])))) (RGQ (If (Ref __uid_7) (Let __iruid_303415 (GetField PL (Ref __uid_8)) (Let __iruid_303416 (Apply unphasedDiploidGtIndex () Int32 (Apply Call () Call (I32 0) (ApplyBinaryPrimOp Subtract (Ref __uid_6) (I32 1)) (False))) (Let __iruid_303417 (Str " File \"/t...") (ArrayRef (Ref __iruid_303415) (If (ApplyComparisonOp LT (Ref __iruid_303416) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303415)) (Ref __iruid_303416)) (Ref __iruid_303416)) (Ref __iruid_303417))))) (NA Int32))) (END (Ref __cse_2)) (gvcf_info (If (IsNA (Ref __cse_2)) (Let __cse_3 (GetField info (Ref __iruid_303405)) (MakeStruct (BaseQRankSum (GetField BaseQRankSum (Ref __cse_3))) (ClippingRankSum (GetField ClippingRankSum (Ref __cse_3))) (DS (GetField DS (Ref __cse_3))) (ExcessHet (GetField ExcessHet (Ref __cse_3))) (HaplotypeScore (GetField HaplotypeScore (Ref __cse_3))) (InbreedingCoeff (GetField InbreedingCoeff (Ref __cse_3))) (MLEAC (GetField MLEAC (Ref __cse_3))) (MLEAF (GetField MLEAF (Ref __cse_3))) (MQ (GetField MQ (Ref __cse_3))) (MQ0 (GetField MQ0 (Ref __cse_3))) (MQRankSum (GetField MQRankSum (Ref __cse_3))) (RAW_MQ (GetField RAW_MQ (Ref __cse_3))) (ReadPosRankSum (GetField ReadPosRankSum (Ref __cse_3))) (VariantType (GetField VariantType (Ref __cse_3))))) (NA Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String}))) (AB (GetField AB (Ref __uid_8))) (DP (GetField DP (Ref __uid_8))) (GQ (GetField GQ (Ref __uid_8))) (MIN_DP (GetField MIN_DP (Ref __uid_8))) (MQ0 (GetField MQ0 (Ref __uid_8))) (PID (GetField PID (Ref __uid_8))) (SB (GetField SB (Ref __uid_8))))))))))))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:46 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 252: (Coalesce (Let __iruid_303458 (GetField alleles (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)) (Let __iruid_303459 (GetField END (GetField info (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (Let __iruid_303460 (ApplyComparisonOp EQ (ArrayRef (Ref __iruid_303458) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303458)) (I32 -1)) (Str " File \"/t...")) (Str "")) (Let __iruid_303461 (ArrayLen (Ref __iruid_303458)) (MakeStruct (locus (GetField locus (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (alleles (If (Ref __iruid_303460) (Let __iruid_303462 (GetField alleles (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)) (If (IsNA (Ref __iruid_303462)) (Ref __iruid_303462) (ToArray (StreamMap __iruid_303463 (StreamRange False (I32 0) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303462)) (I32 -1)) (I32 1)) (ArrayRef (Ref __iruid_303462) (Ref __iruid_303463) (Str "")))))) (GetField alleles (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)))) (rsid (GetField rsid (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (__entries (ToArray (StreamMap __iruid_303464 (ToStream False (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (MakeStruct (LA (ToArray (StreamRange False (I32 0) (ApplyBinaryPrimOp Subtract (Ref __iruid_303461) (If (Ref __iruid_303460) (I32 1) (I32 0))) (I32 1)))) (LGT (If (ApplyComparisonOp LT (Apply unphasedDiploidGtIndex () Int32 (GetField GT (Ref __iruid_303464))) (Apply triangle () Int32 (ApplyBinaryPrimOp Subtract (Ref __iruid_303461) (Apply toInt32 () Int32 (Ref __iruid_303460))))) (GetField GT (Ref __iruid_303464)) (If (ApplyComparisonOp LT (Apply unphasedDiploidGtIndex () Int32 (GetField GT (Ref __iruid_303464))) (Apply triangle () Int32 (Ref __iruid_303461))) (NA Call) (Die Call 1 (Apply concat () String (Apply concat () String (Apply concat () String (Str "invalid GT ") (Apply str () String (GetField GT (Ref __iruid_303464)))) (Str " at site ")) (Apply str () String (GetField locus (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)))))))) (LAD (If (Ref __iruid_303460) (Let __iruid_303465 (GetField AD (Ref __iruid_303464)) (If (IsNA (Ref __iruid_303465)) (Ref __iruid_303465) (ToArray (StreamMap __iruid_303466 (StreamRange False (I32 0) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303465)) (I32 -1)) (I32 1)) (ArrayRef (Ref __iruid_303465) (Ref __iruid_303466) (Str "")))))) (GetField AD (Ref __iruid_303464)))) (LPGT (GetField PGT (Ref __iruid_303464))) (LPL (If (Ref __iruid_303460) (If (ApplyComparisonOp GT (Ref __iruid_303461) (I32 2)) (Let __iruid_303467 (GetField PL (Ref __iruid_303464)) (Let __iruid_303468 (ApplyUnaryPrimOp Negate (Ref __iruid_303461)) (If (IsNA (Ref __iruid_303467)) (Ref __iruid_303467) (ToArray (StreamMap __iruid_303469 (StreamRange False (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_303468) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303467)) (Ref __iruid_303468)) (If (ApplyComparisonOp LT (Ref __iruid_303468) (ArrayLen (Ref __iruid_303467))) (Ref __iruid_303468) (ArrayLen (Ref __iruid_303467)))) (I32 1)) (ArrayRef (Ref __iruid_303467) (Ref __iruid_303469) (Str ""))))))) (NA Array[Int32])) (If (ApplyComparisonOp GT (Ref __iruid_303461) (I32 1)) (GetField PL (Ref __iruid_303464)) (NA Array[Int32])))) (RGQ (If (Ref __iruid_303460) (Let __iruid_303470 (GetField PL (Ref __iruid_303464)) (Let __iruid_303471 (Apply unphasedDiploidGtIndex () Int32 (Apply Call () Call (I32 0) (ApplyBinaryPrimOp Subtract (Ref __iruid_303461) (I32 1)) (False))) (ArrayRef (Ref __iruid_303470) (If (ApplyComparisonOp LT (Ref __iruid_303471) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303470)) (Ref __iruid_303471)) (Ref __iruid_303471)) (Str " File \"/t...")))) (NA Int32))) (END (Ref __iruid_303459)) (gvcf_info (If (IsNA (Ref __iruid_303459)) (Let __iruid_303472 (GetField info (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)) (MakeStruct (BaseQRankSum (GetField BaseQRankSum (Ref __iruid_303472))) (ClippingRankSum (GetField ClippingRankSum (Ref __iruid_303472))) (DS (GetField DS (Ref __iruid_303472))) (ExcessHet (GetField ExcessHet (Ref __iruid_303472))) (HaplotypeScore (GetField HaplotypeScore (Ref __iruid_303472))) (InbreedingCoeff (GetField InbreedingCoeff (Ref __iruid_303472))) (MLEAC (GetField MLEAC (Ref __iruid_303472))) (MLEAF (GetField MLEAF (Ref __iruid_303472))) (MQ (GetField MQ (Ref __iruid_303472))) (MQ0 (GetField MQ0 (Ref __iruid_303472))) (MQRankSum (GetField MQRankSum (Ref __iruid_303472))) (RAW_MQ (GetField RAW_MQ (Ref __iruid_303472))) (ReadPosRankSum (GetField ReadPosRankSum (Ref __iruid_303472))) (VariantType (GetField VariantType (Ref __iruid_303472))))) (NA Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String}))) (AB (GetField AB (Ref __iruid_303464))) (DP (GetField DP (Ref __iruid_303464))) (GQ (GetField GQ (Ref __iruid_303464))) (MIN_DP (GetField MIN_DP (Ref __iruid_303464))) (MQ0 (GetField MQ0 (Ref __iruid_303464))) (PID (GetField PID (Ref __iruid_303464))) (SB (GetField SB (Ref __iruid_303464)))))))))))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:47 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 252: (Coalesce (Let __iruid_303458 (GetField alleles (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)) (Let __iruid_303459 (GetField END (GetField info (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (Let __iruid_303460 (ApplyComparisonOp EQ (ArrayRef (Ref __iruid_303458) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303458)) (I32 -1)) (Str " File \"/t...")) (Str "")) (Let __iruid_303461 (ArrayLen (Ref __iruid_303458)) (MakeStruct (locus (GetField locus (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (alleles (If (Ref __iruid_303460) (Let __iruid_303462 (GetField alleles (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)) (If (IsNA (Ref __iruid_303462)) (Ref __iruid_303462) (ToArray (StreamMap __iruid_303463 (StreamRange False (I32 0) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303462)) (I32 -1)) (I32 1)) (ArrayRef (Ref __iruid_303462) (Ref __iruid_303463) (Str "")))))) (GetField alleles (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)))) (rsid (GetField rsid (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (__entries (ToArray (StreamMap __iruid_303464 (ToStream False (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (MakeStruct (LA (ToArray (StreamRange False (I32 0) (ApplyBinaryPrimOp Subtract (Ref __iruid_303461) (If (Ref __iruid_303460) (I32 1) (I32 0))) (I32 1)))) (LGT (If (ApplyComparisonOp LT (Apply unphasedDiploidGtIndex () Int32 (GetField GT (Ref __iruid_303464))) (Apply triangle () Int32 (ApplyBinaryPrimOp Subtract (Ref __iruid_303461) (Apply toInt32 () Int32 (Ref __iruid_303460))))) (GetField GT (Ref __iruid_303464)) (If (ApplyComparisonOp LT (Apply unphasedDiploidGtIndex () Int32 (GetField GT (Ref __iruid_303464))) (Apply triangle () Int32 (Ref __iruid_303461))) (NA Call) (Die Call 1 (Apply concat () String (Apply concat () String (Apply concat () String (Str "invalid GT ") (Apply str () String (GetField GT (Ref __iruid_303464)))) (Str " at site ")) (Apply str () String (GetField locus (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)))))))) (LAD (If (Ref __iruid_303460) (Let __iruid_303465 (GetField AD (Ref __iruid_303464)) (If (IsNA (Ref __iruid_303465)) (Ref __iruid_303465) (ToArray (StreamMap __iruid_303466 (StreamRange False (I32 0) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303465)) (I32 -1)) (I32 1)) (ArrayRef (Ref __iruid_303465) (Ref __iruid_303466) (Str "")))))) (GetField AD (Ref __iruid_303464)))) (LPGT (GetField PGT (Ref __iruid_303464))) (LPL (If (Ref __iruid_303460) (If (ApplyComparisonOp GT (Ref __iruid_303461) (I32 2)) (Let __iruid_303467 (GetField PL (Ref __iruid_303464)) (Let __iruid_303468 (ApplyUnaryPrimOp Negate (Ref __iruid_303461)) (If (IsNA (Ref __iruid_303467)) (Ref __iruid_303467) (ToArray (StreamMap __iruid_303469 (StreamRange False (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_303468) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303467)) (Ref __iruid_303468)) (If (ApplyComparisonOp LT (Ref __iruid_303468) (ArrayLen (Ref __iruid_303467))) (Ref __iruid_303468) (ArrayLen (Ref __iruid_303467)))) (I32 1)) (ArrayRef (Ref __iruid_303467) (Ref __iruid_303469) (Str ""))))))) (NA Array[Int32])) (If (ApplyComparisonOp GT (Ref __iruid_303461) (I32 1)) (GetField PL (Ref __iruid_303464)) (NA Array[Int32])))) (RGQ (If (Ref __iruid_303460) (Let __iruid_303470 (GetField PL (Ref __iruid_303464)) (Let __iruid_303471 (Apply unphasedDiploidGtIndex () Int32 (Apply Call () Call (I32 0) (ApplyBinaryPrimOp Subtract (Ref __iruid_303461) (I32 1)) (False))) (ArrayRef (Ref __iruid_303470) (If (ApplyComparisonOp LT (Ref __iruid_303471) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303470)) (Ref __iruid_303471)) (Ref __iruid_303471)) (Str " File \"/t...")))) (NA Int32))) (END (Ref __iruid_303459)) (gvcf_info (If (IsNA (Ref __iruid_303459)) (Let __iruid_303472 (GetField info (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)) (MakeStruct (BaseQRankSum (GetField BaseQRankSum (Ref __iruid_303472))) (ClippingRankSum (GetField ClippingRankSum (Ref __iruid_303472))) (DS (GetField DS (Ref __iruid_303472))) (ExcessHet (GetField ExcessHet (Ref __iruid_303472))) (HaplotypeScore (GetField HaplotypeScore (Ref __iruid_303472))) (InbreedingCoeff (GetField InbreedingCoeff (Ref __iruid_303472))) (MLEAC (GetField MLEAC (Ref __iruid_303472))) (MLEAF (GetField MLEAF (Ref __iruid_303472))) (MQ (GetField MQ (Ref __iruid_303472))) (MQ0 (GetField MQ0 (Ref __iruid_303472))) (MQRankSum (GetField MQRankSum (Ref __iruid_303472))) (RAW_MQ (GetField RAW_MQ (Ref __iruid_303472))) (ReadPosRankSum (GetField ReadPosRankSum (Ref __iruid_303472))) (VariantType (GetField VariantType (Ref __iruid_303472))))) (NA Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String}))) (AB (GetField AB (Ref __iruid_303464))) (DP (GetField DP (Ref __iruid_303464))) (GQ (GetField GQ (Ref __iruid_303464))) (MIN_DP (GetField MIN_DP (Ref __iruid_303464))) (MQ0 (GetField MQ0 (Ref __iruid_303464))) (PID (GetField PID (Ref __iruid_303464))) (SB (GetField SB (Ref __iruid_303464)))))))))))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:47 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 252: (Coalesce (Let __iruid_303503 (GetField alleles (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)) (Let __iruid_303504 (GetField END (GetField info (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (Let __iruid_303505 (ApplyComparisonOp EQ (ArrayRef (Ref __iruid_303503) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303503)) (I32 -1)) (Str " File \"/t...")) (Str "")) (Let __iruid_303506 (ArrayLen (Ref __iruid_303503)) (MakeStruct (locus (GetField locus (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (alleles (If (Ref __iruid_303505) (Let __iruid_303507 (GetField alleles (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)) (If (IsNA (Ref __iruid_303507)) (Ref __iruid_303507) (ToArray (StreamMap __iruid_303508 (StreamRange False (I32 0) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303507)) (I32 -1)) (I32 1)) (ArrayRef (Ref __iruid_303507) (Ref __iruid_303508) (Str "")))))) (GetField alleles (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)))) (rsid (GetField rsid (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (__entries (ToArray (StreamMap __iruid_303509 (ToStream False (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1))) (MakeStruct (LA (ToArray (StreamRange False (I32 0) (ApplyBinaryPrimOp Subtract (Ref __iruid_303506) (If (Ref __iruid_303505) (I32 1) (I32 0))) (I32 1)))) (LGT (If (ApplyComparisonOp LT (Apply unphasedDiploidGtIndex () Int32 (GetField GT (Ref __iruid_303509))) (Apply triangle () Int32 (ApplyBinaryPrimOp Subtract (Ref __iruid_303506) (Apply toInt32 () Int32 (Ref __iruid_303505))))) (GetField GT (Ref __iruid_303509)) (If (ApplyComparisonOp LT (Apply unphasedDiploidGtIndex () Int32 (GetField GT (Ref __iruid_303509))) (Apply triangle () Int32 (Ref __iruid_303506))) (NA Call) (Die Call 1 (Apply concat () String (Apply concat () String (Apply concat () String (Str "invalid GT ") (Apply str () String (GetField GT (Ref __iruid_303509)))) (Str " at site ")) (Apply str () String (GetField locus (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)))))))) (LAD (If (Ref __iruid_303505) (Let __iruid_303510 (GetField AD (Ref __iruid_303509)) (If (IsNA (Ref __iruid_303510)) (Ref __iruid_303510) (ToArray (StreamMap __iruid_303511 (StreamRange False (I32 0) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303510)) (I32 -1)) (I32 1)) (ArrayRef (Ref __iruid_303510) (Ref __iruid_303511) (Str "")))))) (GetField AD (Ref __iruid_303509)))) (LPGT (GetField PGT (Ref __iruid_303509))) (LPL (If (Ref __iruid_303505) (If (ApplyComparisonOp GT (Ref __iruid_303506) (I32 2)) (Let __iruid_303512 (GetField PL (Ref __iruid_303509)) (Let __iruid_303513 (ApplyUnaryPrimOp Negate (Ref __iruid_303506)) (If (IsNA (Ref __iruid_303512)) (Ref __iruid_303512) (ToArray (StreamMap __iruid_303514 (StreamRange False (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_303513) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303512)) (Ref __iruid_303513)) (If (ApplyComparisonOp LT (Ref __iruid_303513) (ArrayLen (Ref __iruid_303512))) (Ref __iruid_303513) (ArrayLen (Ref __iruid_303512)))) (I32 1)) (ArrayRef (Ref __iruid_303512) (Ref __iruid_303514) (Str ""))))))) (NA Array[Int32])) (If (ApplyComparisonOp GT (Ref __iruid_303506) (I32 1)) (GetField PL (Ref __iruid_303509)) (NA Array[Int32])))) (RGQ (If (Ref __iruid_303505) (Let __iruid_303515 (GetField PL (Ref __iruid_303509)) (Let __iruid_303516 (Apply unphasedDiploidGtIndex () Int32 (Apply Call () Call (I32 0) (ApplyBinaryPrimOp Subtract (Ref __iruid_303506) (I32 1)) (False))) (ArrayRef (Ref __iruid_303515) (If (ApplyComparisonOp LT (Ref __iruid_303516) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_303515)) (Ref __iruid_303516)) (Ref __iruid_303516)) (Str " File \"/t...")))) (NA Int32))) (END (Ref __iruid_303504)) (gvcf_info (If (IsNA (Ref __iruid_303504)) (Let __iruid_303517 (GetField info (In +PCStruct{locus:+PCLocus(GRCh38),alleles:+PCArray[+PCString],rsid:PCString,qual:PFloat64,filters:PCSet[+PCString],info:+PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DP:PInt32,DS:+PBoolean,END:PInt32,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},__entries:+PCArray[+PCStruct{AB:PFloat64,AD:PCArray[PInt32],DP:PInt32,GQ:PInt32,GT:PCCall,MIN_DP:PInt32,MQ0:PInt32,PGT:PCCall,PID:PCString,PL:PCArray[PInt32],SB:PCArray[PInt32]}]} 1)) (MakeStruct (BaseQRankSum (GetField BaseQRankSum (Ref __iruid_303517))) (ClippingRankSum (GetField ClippingRankSum (Ref __iruid_303517))) (DS (GetField DS (Ref __iruid_303517))) (ExcessHet (GetField ExcessHet (Ref __iruid_303517))) (HaplotypeScore (GetField HaplotypeScore (Ref __iruid_303517))) (InbreedingCoeff (GetField InbreedingCoeff (Ref __iruid_303517))) (MLEAC (GetField MLEAC (Ref __iruid_303517))) (MLEAF (GetField MLEAF (Ref __iruid_303517))) (MQ (GetField MQ (Ref __iruid_303517))) (MQ0 (GetField MQ0 (Ref __iruid_303517))) (MQRankSum (GetField MQRankSum (Ref __iruid_303517))) (RAW_MQ (GetField RAW_MQ (Ref __iruid_303517))) (ReadPosRankSum (GetField ReadPosRankSum (Ref __iruid_303517))) (VariantType (GetField VariantType (Ref __iruid_303517))))) (NA Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String}))) (AB (GetField AB (Ref __iruid_303509))) (DP (GetField DP (Ref __iruid_303509))) (GQ (GetField GQ (Ref __iruid_303509))) (MIN_DP (GetField MIN_DP (Ref __iruid_303509))) (MQ0 (GetField MQ0 (Ref __iruid_303509))) (PID (GetField PID (Ref __iruid_303509))) (SB (GetField SB (Ref __iruid_303509)))))))))))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:47 root: INFO: encoder cache miss (865 hits, 3 misses, 0.997) 2021-04-12 16:03:47 root: INFO: instruction count: 3: __C171etypeEncode. 2021-04-12 16:03:47 root: INFO: instruction count: 5: __C171etypeEncode.apply 2021-04-12 16:03:47 root: INFO: instruction count: 43: __C171etypeEncode.__m172ENCODE_r_tuple_of_r_stringANDr_stringANDr_stringANDr_stringEND_TO_r_struct_of_r_binaryANDr_binaryANDr_binaryANDr_binaryEND 2021-04-12 16:03:47 root: INFO: instruction count: 18: __C171etypeEncode.__m173ENCODE_r_string_TO_r_binary 2021-04-12 16:03:47 MemoryStore: INFO: Block broadcast_21 stored as values in memory (estimated size 200.0 B, free 21.7 GB) 2021-04-12 16:03:47 MemoryStore: INFO: Block broadcast_21_piece0 stored as bytes in memory (estimated size 156.0 B, free 21.7 GB) 2021-04-12 16:03:47 BlockManagerInfo: INFO: Added broadcast_21_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 156.0 B, free: 21.7 GB) 2021-04-12 16:03:47 SparkContext: INFO: Created broadcast 21 from broadcast at SparkBackend.scala:259 2021-04-12 16:03:47 root: INFO: instruction count: 3: __C44Compiled. 2021-04-12 16:03:47 root: INFO: instruction count: 112: __C44Compiled.apply 2021-04-12 16:03:47 root: INFO: instruction count: 34: __C44Compiled.__m54ord_equiv 2021-04-12 16:03:47 root: INFO: instruction count: 15: __C44Compiled.__m55ord_equivNonnull 2021-04-12 16:03:47 root: INFO: instruction count: 5: __C44Compiled.__m56ord_compareNonnull 2021-04-12 16:03:47 root: INFO: instruction count: 92: __C44Compiled.__m57ord_compareNonnull 2021-04-12 16:03:47 root: INFO: instruction count: 6: __C44Compiled.__m92unphasedDiploidGtIndex 2021-04-12 16:03:47 root: INFO: instruction count: 10: __C44Compiled.__m93triangle 2021-04-12 16:03:47 root: INFO: instruction count: 2: __C44Compiled.__m94toInt32 2021-04-12 16:03:47 root: INFO: instruction count: 14: __C44Compiled.__m95ord_lt 2021-04-12 16:03:47 root: INFO: instruction count: 12: __C44Compiled.__m96ord_ltNonnull 2021-04-12 16:03:47 root: INFO: instruction count: 80: __C44Compiled.__m97concat 2021-04-12 16:03:47 root: INFO: instruction count: 80: __C44Compiled.__m100concat 2021-04-12 16:03:47 root: INFO: instruction count: 56: __C44Compiled.__m104str 2021-04-12 16:03:47 root: INFO: instruction count: 12: __C44Compiled.__m107setup_null 2021-04-12 16:03:47 root: INFO: instruction count: 93: __C44Compiled.__m111str 2021-04-12 16:03:47 root: INFO: instruction count: 23: __C44Compiled.__m115setup_null 2021-04-12 16:03:47 root: INFO: instruction count: 7: __C44Compiled.__m133ord_gt 2021-04-12 16:03:47 root: INFO: instruction count: 12: __C44Compiled.__m134ord_gtNonnull 2021-04-12 16:03:47 root: INFO: instruction count: 7: __C44Compiled.__m143ord_lt 2021-04-12 16:03:47 root: INFO: instruction count: 12: __C44Compiled.__m144ord_ltNonnull 2021-04-12 16:03:47 root: INFO: instruction count: 14: __C44Compiled.__m145ord_lt 2021-04-12 16:03:47 root: INFO: instruction count: 12: __C44Compiled.__m146ord_ltNonnull 2021-04-12 16:03:47 root: INFO: instruction count: 6: __C44Compiled.__m162unphasedDiploidGtIndex 2021-04-12 16:03:47 root: INFO: instruction count: 8: __C44Compiled.__m163Call 2021-04-12 16:03:47 root: INFO: instruction count: 9: __C44Compiled.setPartitionIndex 2021-04-12 16:03:47 root: INFO: instruction count: 4: __C44Compiled.addPartitionRegion 2021-04-12 16:03:47 root: INFO: instruction count: 4: __C44Compiled.setPool 2021-04-12 16:03:47 root: INFO: instruction count: 63: __C44Compiled.addLiterals 2021-04-12 16:03:47 root: INFO: instruction count: 44: __C44Compiled.__m169DECODE_r_struct_of_r_binaryANDr_binaryANDr_binaryANDr_binaryEND_TO_r_tuple_of_r_stringANDr_stringANDr_stringANDr_stringEND 2021-04-12 16:03:47 root: INFO: instruction count: 33: __C44Compiled.__m170INPLACE_DECODE_r_binary_TO_r_string 2021-04-12 16:03:47 root: INFO: instruction count: 472: __C44Compiled.applyregion198_256 2021-04-12 16:03:47 root: INFO: instruction count: 751: __C44Compiled.applyregion121_177 2021-04-12 16:03:47 root: INFO: instruction count: 643: __C44Compiled.applyregion74_120 2021-04-12 16:03:47 root: INFO: instruction count: 236: __C44Compiled.applyregion56_73 2021-04-12 16:03:47 root: INFO: instruction count: 146: __C44Compiled.applyregion39_49 2021-04-12 16:03:47 root: INFO: instruction count: 259: __C44Compiled.applyregion178_197 2021-04-12 16:03:47 root: INFO: instruction count: 497: __C44Compiled.applyregion34_289 2021-04-12 16:03:47 root: INFO: instruction count: 642: __C44Compiled.applyregion4_292 2021-04-12 16:03:47 root: INFO: instruction count: 3: __C174applySpills. 2021-04-12 16:03:47 root: INFO: instruction count: 3: __C112RGContainer_GRCh38. 2021-04-12 16:03:47 root: INFO: instruction count: 15: __C112RGContainer_GRCh38. 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:47 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:48 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:49 root: INFO: decoder cache hit 2021-04-12 16:03:53 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 6: (Coalesce (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1) (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0)) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:53 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 6: (Coalesce (ApplyIR __uid_9 () Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1) (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0)) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:53 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 923: (Coalesce (Let __iruid_305401 (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1) (Let __iruid_305402 (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0) (Let __cse_2 (GetField data (Ref __iruid_305401)) (Let __cse_1 (ToArray (StreamMap __uid_12 (ToStream False (Ref __cse_2)) (GetField alleles (Ref __uid_12)))) (Let __uid_28 (Let __uid_16 (StreamFold __uid_14 __uid_15 (ToStream False (ToArray (StreamMap __uid_13 (ToStream False (Ref __cse_1)) (Coalesce (Let __iruid_305406 (Ref __uid_13) (Let __iruid_305407 (I32 0) (Let __iruid_305408 (Str " File \"/t...") (ArrayRef (Ref __iruid_305406) (If (ApplyComparisonOp LT (Ref __iruid_305407) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305406)) (Ref __iruid_305407)) (Ref __iruid_305407)) (Ref __iruid_305408))))) (Str ""))))) (Str "") (If (ApplyComparisonOp GT (Apply length () Int32 (Ref __uid_14)) (Apply length () Int32 (Ref __uid_15))) (Ref __uid_14) (Ref __uid_15))) (Let __uid_25 (ToArray (StreamMap __uid_17 (ToStream False (Ref __cse_1)) (Let __uid_18 (Let __iruid_305409 (Ref __uid_17) (Let __iruid_305410 (I32 0) (Let __iruid_305411 (Str " File \"/t...") (ArrayRef (Ref __iruid_305409) (If (ApplyComparisonOp LT (Ref __iruid_305410) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305409)) (Ref __iruid_305410)) (Ref __iruid_305410)) (Ref __iruid_305411))))) (Let __iruid_305457 (MakeArray Array[String] (Ref __uid_16)) (Let __iruid_305458 (ToArray (StreamMap __uid_19 (ToStream False (Let __iruid_305412 (Ref __uid_17) (Let __iruid_305413 (I32 1) (ToArray (StreamMap __iruid_305414 (StreamRange False (If (ApplyComparisonOp LT (Ref __iruid_305413) (I32 0)) (If (ApplyComparisonOp GT (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305412)) (Ref __iruid_305413)) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305412)) (Ref __iruid_305413)) (I32 0)) (Ref __iruid_305413)) (ArrayLen (Ref __iruid_305412)) (I32 1)) (ArrayRef (Ref __iruid_305412) (Ref __iruid_305414) (Str ""))))))) (Let __uid_24 (Let __iruid_305415 (Ref __uid_18) (Let __iruid_305416 (Ref __uid_19) (Let __uid_23 (Ref __iruid_305416) (Let __uid_22 (Ref __iruid_305415) (If (Apply regexMatch () Boolean (Str "^([ACGTNM])+$") (Ref __uid_22)) (If (Apply regexMatch () Boolean (Str "^([ACGTNM])+$") (Ref __uid_23)) (If (ApplyComparisonOp EQ (Apply length () Int32 (Ref __uid_22)) (Apply length () Int32 (Ref __uid_23))) (If (ApplyComparisonOp EQ (Apply length () Int32 (Ref __uid_22)) (I32 1)) (If (ApplyComparisonOp NEQ (Ref __uid_22) (Ref __uid_23)) (I32 1) (I32 0)) (If (ApplyComparisonOp EQ (ApplySpecial hamming () Int32 (Ref __uid_22) (Ref __uid_23)) (I32 1)) (I32 1) (I32 2))) (If (ApplySpecial land () Boolean (ApplySpecial land () Boolean (ApplyComparisonOp LT (Apply length () Int32 (Ref __uid_22)) (Apply length () Int32 (Ref __uid_23))) (ApplyComparisonOp EQ (Let __iruid_305417 (Ref __uid_22) (Let __iruid_305418 (I32 0) (Let __iruid_305419 (Apply length () Int32 (Ref __iruid_305417)) (Let __iruid_305420 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (Ref __iruid_305418) (ApplyUnaryPrimOp Negate (Ref __iruid_305419))) (ApplyComparisonOp GTEQ (Ref __iruid_305418) (Ref __iruid_305419))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Apply str () String (Ref __iruid_305418)) (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305419)))))) (If (ApplyComparisonOp LT (Ref __iruid_305418) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305418) (Ref __iruid_305419)) (Ref __iruid_305418))) (Apply substring () String (Ref __iruid_305417) (Ref __iruid_305420) (ApplyBinaryPrimOp Add (Ref __iruid_305420) (I32 1))))))) (Let __iruid_305421 (Ref __uid_23) (Let __iruid_305422 (I32 0) (Let __iruid_305423 (Apply length () Int32 (Ref __iruid_305421)) (Let __iruid_305424 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (Ref __iruid_305422) (ApplyUnaryPrimOp Negate (Ref __iruid_305423))) (ApplyComparisonOp GTEQ (Ref __iruid_305422) (Ref __iruid_305423))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Apply str () String (Ref __iruid_305422)) (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305423)))))) (If (ApplyComparisonOp LT (Ref __iruid_305422) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305422) (Ref __iruid_305423)) (Ref __iruid_305422))) (Apply substring () String (Ref __iruid_305421) (Ref __iruid_305424) (ApplyBinaryPrimOp Add (Ref __iruid_305424) (I32 1))))))))) (Apply endswith () Boolean (Ref __uid_23) (Let __iruid_305425 (Ref __uid_22) (Let __iruid_305426 (I32 1) (Let __iruid_305427 (Ref __iruid_305425) (Let __iruid_305428 (Ref __iruid_305426) (Let __iruid_305429 (Apply length () Int32 (Ref __iruid_305425)) (Let __iruid_305430 (Apply length () Int32 (Ref __iruid_305427)) (Let __iruid_305431 (If (ApplyComparisonOp LT (Ref __iruid_305428) (ApplyUnaryPrimOp Negate (Ref __iruid_305430))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305428) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305428) (Ref __iruid_305430)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305428) (Ref __iruid_305430)) (Ref __iruid_305430) (Ref __iruid_305428)))) (Let __iruid_305432 (If (ApplyComparisonOp LT (Ref __iruid_305429) (ApplyUnaryPrimOp Negate (Ref __iruid_305430))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305429) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305429) (Ref __iruid_305430)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305429) (Ref __iruid_305430)) (Ref __iruid_305430) (Ref __iruid_305429)))) (Apply substring () String (Ref __iruid_305427) (Ref __iruid_305431) (If (ApplyComparisonOp LT (Ref __iruid_305432) (Ref __iruid_305431)) (Ref __iruid_305431) (Ref __iruid_305432))))))))))))) (I32 3) (If (ApplySpecial land () Boolean (ApplyComparisonOp EQ (Let __iruid_305433 (Ref __uid_22) (Let __iruid_305434 (I32 0) (Let __iruid_305435 (Apply length () Int32 (Ref __iruid_305433)) (Let __iruid_305436 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (Ref __iruid_305434) (ApplyUnaryPrimOp Negate (Ref __iruid_305435))) (ApplyComparisonOp GTEQ (Ref __iruid_305434) (Ref __iruid_305435))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Apply str () String (Ref __iruid_305434)) (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305435)))))) (If (ApplyComparisonOp LT (Ref __iruid_305434) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305434) (Ref __iruid_305435)) (Ref __iruid_305434))) (Apply substring () String (Ref __iruid_305433) (Ref __iruid_305436) (ApplyBinaryPrimOp Add (Ref __iruid_305436) (I32 1))))))) (Let __iruid_305437 (Ref __uid_23) (Let __iruid_305438 (I32 0) (Let __iruid_305439 (Apply length () Int32 (Ref __iruid_305437)) (Let __iruid_305440 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (Ref __iruid_305438) (ApplyUnaryPrimOp Negate (Ref __iruid_305439))) (ApplyComparisonOp GTEQ (Ref __iruid_305438) (Ref __iruid_305439))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Apply str () String (Ref __iruid_305438)) (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305439)))))) (If (ApplyComparisonOp LT (Ref __iruid_305438) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305438) (Ref __iruid_305439)) (Ref __iruid_305438))) (Apply substring () String (Ref __iruid_305437) (Ref __iruid_305440) (ApplyBinaryPrimOp Add (Ref __iruid_305440) (I32 1)))))))) (Apply endswith () Boolean (Ref __uid_22) (Let __iruid_305441 (Ref __uid_23) (Let __iruid_305442 (I32 1) (Let __iruid_305443 (Ref __iruid_305441) (Let __iruid_305444 (Ref __iruid_305442) (Let __iruid_305445 (Apply length () Int32 (Ref __iruid_305441)) (Let __iruid_305446 (Apply length () Int32 (Ref __iruid_305443)) (Let __iruid_305447 (If (ApplyComparisonOp LT (Ref __iruid_305444) (ApplyUnaryPrimOp Negate (Ref __iruid_305446))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305444) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305444) (Ref __iruid_305446)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305444) (Ref __iruid_305446)) (Ref __iruid_305446) (Ref __iruid_305444)))) (Let __iruid_305448 (If (ApplyComparisonOp LT (Ref __iruid_305445) (ApplyUnaryPrimOp Negate (Ref __iruid_305446))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305445) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305445) (Ref __iruid_305446)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305445) (Ref __iruid_305446)) (Ref __iruid_305446) (Ref __iruid_305445)))) (Apply substring () String (Ref __iruid_305443) (Ref __iruid_305447) (If (ApplyComparisonOp LT (Ref __iruid_305448) (Ref __iruid_305447)) (Ref __iruid_305447) (Ref __iruid_305448))))))))))))) (I32 4) (I32 5)))) (If (ApplyComparisonOp EQ (Ref __uid_23) (Str "*")) (I32 6) (If (Apply regexMatch () Boolean (Str "(^\\.)|(\\.$...") (Ref __uid_23)) (I32 7) (I32 0)))) (I32 0)))))) (If (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplyComparisonOp EQ (Ref __uid_24) (I32 1)) (ApplyComparisonOp EQ (Ref __uid_24) (I32 3))) (ApplyComparisonOp EQ (Ref __uid_24) (I32 4))) (ApplyComparisonOp EQ (Ref __uid_24) (I32 2))) (ApplyComparisonOp EQ (Ref __uid_24) (I32 5))) (Apply concat () String (Ref __uid_19) (Let __iruid_305449 (Ref __uid_16) (Let __iruid_305450 (Apply length () Int32 (Ref __uid_18)) (Let __iruid_305451 (Ref __iruid_305449) (Let __iruid_305452 (Ref __iruid_305450) (Let __iruid_305453 (Apply length () Int32 (Ref __iruid_305449)) (Let __iruid_305454 (Apply length () Int32 (Ref __iruid_305451)) (Let __iruid_305455 (If (ApplyComparisonOp LT (Ref __iruid_305452) (ApplyUnaryPrimOp Negate (Ref __iruid_305454))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305452) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305452) (Ref __iruid_305454)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305452) (Ref __iruid_305454)) (Ref __iruid_305454) (Ref __iruid_305452)))) (Let __iruid_305456 (If (ApplyComparisonOp LT (Ref __iruid_305453) (ApplyUnaryPrimOp Negate (Ref __iruid_305454))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305453) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305453) (Ref __iruid_305454)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305453) (Ref __iruid_305454)) (Ref __iruid_305454) (Ref __iruid_305453)))) (Apply substring () String (Ref __iruid_305451) (Ref __iruid_305455) (If (ApplyComparisonOp LT (Ref __iruid_305456) (Ref __iruid_305455)) (Ref __iruid_305455) (Ref __iruid_305456)))))))))))) (Ref __uid_19))))) (If (IsNA (Ref __iruid_305457)) (NA Array[String]) (If (IsNA (Ref __iruid_305458)) (NA Array[String]) (ToArray (StreamFlatMap __iruid_305459 (MakeStream Stream[Array[String]] False (Ref __iruid_305457) (Ref __iruid_305458)) (ToStream False (Ref __iruid_305459))))))))))) (MakeStruct (globl (Let __iruid_305463 (MakeArray Array[String] (Ref __uid_16)) (Let __iruid_305464 (CastToArray (Let __iruid_305460 (ToSet (ToStream False (ToArray (StreamFlatMap __uid_27 (ToStream False (Ref __uid_25)) (ToStream False (Ref __uid_27)))))) (Let __iruid_305461 (Ref __uid_16) (ToSet (StreamFilter __iruid_305462 (ToStream False (Ref __iruid_305460)) (ApplyComparisonOp NEQWithNA (Ref __iruid_305462) (Ref __iruid_305461))))))) (If (IsNA (Ref __iruid_305463)) (NA Array[String]) (If (IsNA (Ref __iruid_305464)) (NA Array[String]) (ToArray (StreamFlatMap __iruid_305465 (MakeStream Stream[Array[String]] False (Ref __iruid_305463) (Ref __iruid_305464)) (ToStream False (Ref __iruid_305465))))))))) (local (Ref __uid_25))))) (Let __cse_3 (GetField globl (Ref __uid_28)) (MakeStruct (locus (GetField locus (Ref __iruid_305401))) (alleles (Ref __cse_3)) (rsid (StreamFold __uid_30 __uid_31 (ToStream False (ToArray (StreamMap __uid_29 (ToStream False (Ref __cse_2)) (GetField rsid (Ref __uid_29))))) (NA String) (If (ApplySpecial land () Boolean (IsNA (Ref __uid_30)) (ApplyUnaryPrimOp Bang (IsNA (Ref __uid_31)))) (Ref __uid_31) (Ref __uid_30)))) (__entries (Let __uid_33 (Let __iruid_305469 (ToArray (StreamMap __uid_32 (ToStream False (ToArray (StreamRange False (I32 0) (ArrayLen (CastToArray (Ref __cse_3))) (I32 1)))) (MakeTuple (0 1) (Let __iruid_305466 (Ref __cse_3) (Let __iruid_305467 (Ref __uid_32) (Let __iruid_305468 (Str " File \"/t...") (ArrayRef (Ref __iruid_305466) (If (ApplyComparisonOp LT (Ref __iruid_305467) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305466)) (Ref __iruid_305467)) (Ref __iruid_305467)) (Ref __iruid_305468))))) (Ref __uid_32)))) (ToDict (ToStream False (Ref __iruid_305469)))) (ToArray (StreamFlatMap __uid_40 (ToStream False (ToArray (StreamRange False (I32 0) (ArrayLen (CastToArray (Ref __cse_2))) (I32 1)))) (ToStream False (If (IsNA (GetField __entries (Let __iruid_305470 (Ref __cse_2) (Let __iruid_305471 (Ref __uid_40) (Let __iruid_305472 (Str " File \"/t...") (ArrayRef (Ref __iruid_305470) (If (ApplyComparisonOp LT (Ref __iruid_305471) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305470)) (Ref __iruid_305471)) (Ref __iruid_305471)) (Ref __iruid_305472))))))) (ToArray (StreamMap __uid_41 (ToStream False (ToArray (StreamRange False (I32 0) (ArrayLen (CastToArray (GetField __cols (Let __iruid_305473 (GetField g (Ref __iruid_305402)) (Let __iruid_305474 (Ref __uid_40) (Let __iruid_305475 (Str " File \"/t...") (ArrayRef (Ref __iruid_305473) (If (ApplyComparisonOp LT (Ref __iruid_305474) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305473)) (Ref __iruid_305474)) (Ref __iruid_305474)) (Ref __iruid_305475)))))))) (I32 1)))) (NA Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}))) (Let __cse_4 (GetField local (Ref __uid_28)) (Let __uid_43 (ToArray (StreamMap __uid_42 (ToStream False (ToArray (StreamRange False (I32 0) (ArrayLen (CastToArray (Let __iruid_305476 (Ref __cse_4) (Let __iruid_305477 (Ref __uid_40) (Let __iruid_305478 (Str " File \"/t...") (ArrayRef (Ref __iruid_305476) (If (ApplyComparisonOp LT (Ref __iruid_305477) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305476)) (Ref __iruid_305477)) (Ref __iruid_305477)) (Ref __iruid_305478))))))) (I32 1)))) (Let __iruid_305485 (Ref __uid_33) (Let __iruid_305486 (Let __iruid_305482 (Let __iruid_305479 (Ref __cse_4) (Let __iruid_305480 (Ref __uid_40) (Let __iruid_305481 (Str " File \"/t...") (ArrayRef (Ref __iruid_305479) (If (ApplyComparisonOp LT (Ref __iruid_305480) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305479)) (Ref __iruid_305480)) (Ref __iruid_305480)) (Ref __iruid_305481))))) (Let __iruid_305483 (Ref __uid_42) (Let __iruid_305484 (Str " File \"/t...") (ArrayRef (Ref __iruid_305482) (If (ApplyComparisonOp LT (Ref __iruid_305483) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305482)) (Ref __iruid_305483)) (Ref __iruid_305483)) (Ref __iruid_305484))))) (If (IsNA (Ref __iruid_305485)) (NA Int32) (Let __iruid_305489 (LowerBoundOnOrderedCollection True (Ref __iruid_305485) (Ref __iruid_305486)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_305489) (ArrayLen (CastToArray (Ref __iruid_305485)))) (Die Int32 -1 (Apply concat () String (Str "Key '") (Apply concat () String (Apply str () String (Ref __iruid_305486)) (Apply concat () String (Str "' not f...") (Apply str () String (Let __iruid_305490 (Ref __iruid_305485) (ToArray (StreamMap __iruid_305491 (ToStream False (Ref __iruid_305490)) (GetField key (Ref __iruid_305491)))))))))) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef (CastToArray (Ref __iruid_305485)) (Ref __iruid_305489) (Str ""))) (Ref __iruid_305486)) (GetField value (ArrayRef (CastToArray (Ref __iruid_305485)) (Ref __iruid_305489) (Str ""))) (Die Int32 -1 (Apply concat () String (Str "Key '") (Apply concat () String (Apply str () String (Ref __iruid_305486)) (Apply concat () String (Str "' not f...") (Apply str () String (Let __iruid_305492 (Ref __iruid_305485) (ToArray (StreamMap __iruid_305493 (ToStream False (Ref __iruid_305492)) (GetField key (Ref __iruid_305493)))))))))))))))))) (ToArray (StreamMap __uid_44 (ToStream False (GetField __entries (Let __iruid_305494 (GetField data (Ref __iruid_305401)) (Let __iruid_305495 (Ref __uid_40) (Let __iruid_305496 (Str " File \"/t...") (ArrayRef (Ref __iruid_305494) (If (ApplyComparisonOp LT (Ref __iruid_305495) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305494)) (Ref __iruid_305495)) (Ref __iruid_305495)) (Ref __iruid_305496))))))) (InsertFields (Ref __uid_44) None (LA (ToArray (StreamMap __uid_45 (ToStream False (GetField LA (Ref __uid_44))) (Let __iruid_305403 (Ref __uid_43) (Let __iruid_305404 (Ref __uid_45) (Let __iruid_305405 (Str " File \"/t...") (ArrayRef (Ref __iruid_305403) (If (ApplyComparisonOp LT (Ref __iruid_305404) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305403)) (Ref __iruid_305404)) (Ref __iruid_305404)) (Ref __iruid_305405)))))))))))))))))))))))))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:53 root: INFO: instruction count: 3: __C195Compiled. 2021-04-12 16:03:53 root: INFO: instruction count: 47: __C195Compiled.apply 2021-04-12 16:03:53 root: INFO: instruction count: 56: __C195Compiled.__m196str 2021-04-12 16:03:53 root: INFO: instruction count: 12: __C195Compiled.__m199setup_null 2021-04-12 16:03:53 root: INFO: instruction count: 9: __C195Compiled.setPartitionIndex 2021-04-12 16:03:53 root: INFO: instruction count: 4: __C195Compiled.addPartitionRegion 2021-04-12 16:03:53 root: INFO: instruction count: 4: __C195Compiled.setPool 2021-04-12 16:03:53 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 703: (Coalesce (Let __iruid_305683 (GetField data (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1)) (Let __iruid_305684 (ToArray (StreamMap __iruid_305685 (ToStream False (Ref __iruid_305683)) (GetField alleles (Ref __iruid_305685)))) (Let __iruid_305686 (StreamFold __iruid_305687 __iruid_305688 (ToStream False (Ref __iruid_305684)) (Str "") (Let __iruid_305689 (Coalesce (ArrayRef (Ref __iruid_305688) (I32 0) (Str " File \"/t...")) (Str "")) (If (ApplyComparisonOp GT (Apply length () Int32 (Ref __iruid_305687)) (Apply length () Int32 (Ref __iruid_305689))) (Ref __iruid_305687) (Ref __iruid_305689)))) (Let __iruid_305690 (ToArray (StreamMap __iruid_305691 (ToStream False (Ref __iruid_305684)) (Let __iruid_305692 (ArrayRef (Ref __iruid_305691) (I32 0) (Str " File \"/t...")) (Let __iruid_305693 (MakeArray Array[String] (Ref __iruid_305686)) (Let __iruid_305694 (ToArray (StreamMap __iruid_305695 (StreamRange False (I32 1) (ArrayLen (Ref __iruid_305691)) (I32 1)) (Let __iruid_305696 (ArrayRef (Ref __iruid_305691) (Ref __iruid_305695) (Str "")) (Let __iruid_305697 (If (Apply regexMatch () Boolean (Str "^([ACGTNM])+$") (Ref __iruid_305692)) (If (Apply regexMatch () Boolean (Str "^([ACGTNM])+$") (Ref __iruid_305696)) (If (ApplyComparisonOp EQ (Apply length () Int32 (Ref __iruid_305692)) (Apply length () Int32 (Ref __iruid_305696))) (If (ApplyComparisonOp EQ (Apply length () Int32 (Ref __iruid_305692)) (I32 1)) (If (ApplyComparisonOp NEQ (Ref __iruid_305692) (Ref __iruid_305696)) (I32 1) (I32 0)) (If (ApplyComparisonOp EQ (ApplySpecial hamming () Int32 (Ref __iruid_305692) (Ref __iruid_305696)) (I32 1)) (I32 1) (I32 2))) (If (ApplySpecial land () Boolean (ApplySpecial land () Boolean (ApplyComparisonOp LT (Apply length () Int32 (Ref __iruid_305692)) (Apply length () Int32 (Ref __iruid_305696))) (ApplyComparisonOp EQ (Let __iruid_305698 (Apply length () Int32 (Ref __iruid_305692)) (Let __iruid_305699 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305698))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305698))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305698)))))) (I32 0)) (Apply substring () String (Ref __iruid_305692) (Ref __iruid_305699) (ApplyBinaryPrimOp Add (Ref __iruid_305699) (I32 1))))) (Let __iruid_305700 (Apply length () Int32 (Ref __iruid_305696)) (Let __iruid_305701 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305700))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305700))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305700)))))) (I32 0)) (Apply substring () String (Ref __iruid_305696) (Ref __iruid_305701) (ApplyBinaryPrimOp Add (Ref __iruid_305701) (I32 1))))))) (Apply endswith () Boolean (Ref __iruid_305696) (Let __iruid_305702 (Apply length () Int32 (Ref __iruid_305692)) (Let __iruid_305703 (Apply length () Int32 (Ref __iruid_305692)) (Let __iruid_305704 (If (ApplyComparisonOp LT (I32 1) (ApplyUnaryPrimOp Negate (Ref __iruid_305703))) (I32 0) (If (ApplyComparisonOp GTEQ (I32 1) (Ref __iruid_305703)) (Ref __iruid_305703) (I32 1))) (Let __iruid_305705 (If (ApplyComparisonOp LT (Ref __iruid_305702) (ApplyUnaryPrimOp Negate (Ref __iruid_305703))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305702) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305702) (Ref __iruid_305703)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305702) (Ref __iruid_305703)) (Ref __iruid_305703) (Ref __iruid_305702)))) (Apply substring () String (Ref __iruid_305692) (Ref __iruid_305704) (If (ApplyComparisonOp LT (Ref __iruid_305705) (Ref __iruid_305704)) (Ref __iruid_305704) (Ref __iruid_305705))))))))) (I32 3) (If (ApplySpecial land () Boolean (ApplyComparisonOp EQ (Let __iruid_305706 (Apply length () Int32 (Ref __iruid_305692)) (Let __iruid_305707 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305706))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305706))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305706)))))) (I32 0)) (Apply substring () String (Ref __iruid_305692) (Ref __iruid_305707) (ApplyBinaryPrimOp Add (Ref __iruid_305707) (I32 1))))) (Let __iruid_305708 (Apply length () Int32 (Ref __iruid_305696)) (Let __iruid_305709 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305708))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305708))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305708)))))) (I32 0)) (Apply substring () String (Ref __iruid_305696) (Ref __iruid_305709) (ApplyBinaryPrimOp Add (Ref __iruid_305709) (I32 1)))))) (Apply endswith () Boolean (Ref __iruid_305692) (Let __iruid_305710 (Apply length () Int32 (Ref __iruid_305696)) (Let __iruid_305711 (Apply length () Int32 (Ref __iruid_305696)) (Let __iruid_305712 (If (ApplyComparisonOp LT (I32 1) (ApplyUnaryPrimOp Negate (Ref __iruid_305711))) (I32 0) (If (ApplyComparisonOp GTEQ (I32 1) (Ref __iruid_305711)) (Ref __iruid_305711) (I32 1))) (Let __iruid_305713 (If (ApplyComparisonOp LT (Ref __iruid_305710) (ApplyUnaryPrimOp Negate (Ref __iruid_305711))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305710) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305710) (Ref __iruid_305711)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305710) (Ref __iruid_305711)) (Ref __iruid_305711) (Ref __iruid_305710)))) (Apply substring () String (Ref __iruid_305696) (Ref __iruid_305712) (If (ApplyComparisonOp LT (Ref __iruid_305713) (Ref __iruid_305712)) (Ref __iruid_305712) (Ref __iruid_305713))))))))) (I32 4) (I32 5)))) (If (ApplyComparisonOp EQ (Ref __iruid_305696) (Str "*")) (I32 6) (If (Apply regexMatch () Boolean (Str "(^\\.)|(\\.$...") (Ref __iruid_305696)) (I32 7) (I32 0)))) (I32 0)) (If (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplyComparisonOp EQ (Ref __iruid_305697) (I32 1)) (ApplyComparisonOp EQ (Ref __iruid_305697) (I32 3))) (ApplyComparisonOp EQ (Ref __iruid_305697) (I32 4))) (ApplyComparisonOp EQ (Ref __iruid_305697) (I32 2))) (ApplyComparisonOp EQ (Ref __iruid_305697) (I32 5))) (Apply concat () String (Ref __iruid_305696) (Let __iruid_305714 (Apply length () Int32 (Ref __iruid_305692)) (Let __iruid_305715 (Apply length () Int32 (Ref __iruid_305686)) (Let __iruid_305716 (Apply length () Int32 (Ref __iruid_305686)) (Let __iruid_305717 (If (ApplyComparisonOp LT (Ref __iruid_305714) (ApplyUnaryPrimOp Negate (Ref __iruid_305716))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305714) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305714) (Ref __iruid_305716)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305714) (Ref __iruid_305716)) (Ref __iruid_305716) (Ref __iruid_305714)))) (Let __iruid_305718 (If (ApplyComparisonOp LT (Ref __iruid_305715) (ApplyUnaryPrimOp Negate (Ref __iruid_305716))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305715) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305715) (Ref __iruid_305716)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305715) (Ref __iruid_305716)) (Ref __iruid_305716) (Ref __iruid_305715)))) (Apply substring () String (Ref __iruid_305686) (Ref __iruid_305717) (If (ApplyComparisonOp LT (Ref __iruid_305718) (Ref __iruid_305717)) (Ref __iruid_305717) (Ref __iruid_305718))))))))) (Ref __iruid_305696)))))) (If (IsNA (Ref __iruid_305693)) (NA Array[String]) (If (IsNA (Ref __iruid_305694)) (NA Array[String]) (ToArray (StreamFlatMap __iruid_305719 (MakeStream Stream[Array[String]] False (Ref __iruid_305693) (Ref __iruid_305694)) (ToStream False (Ref __iruid_305719))))))))))) (Let __iruid_305720 (MakeStruct (globl (Let __iruid_305721 (MakeArray Array[String] (Ref __iruid_305686)) (Let __iruid_305722 (CastToArray (ToSet (StreamFilter __iruid_305723 (ToStream False (ToSet (StreamFlatMap __iruid_305724 (ToStream False (Ref __iruid_305690)) (ToStream False (Ref __iruid_305724))))) (ApplyComparisonOp NEQWithNA (Ref __iruid_305723) (Ref __iruid_305686))))) (If (IsNA (Ref __iruid_305721)) (NA Array[String]) (If (IsNA (Ref __iruid_305722)) (NA Array[String]) (ToArray (StreamFlatMap __iruid_305725 (MakeStream Stream[Array[String]] False (Ref __iruid_305721) (Ref __iruid_305722)) (ToStream False (Ref __iruid_305725))))))))) (local (Ref __iruid_305690))) (Let __iruid_305726 (GetField globl (Ref __iruid_305720)) (MakeStruct (locus (GetField locus (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1))) (alleles (Ref __iruid_305726)) (rsid (StreamFold __iruid_305727 __iruid_305728 (ToStream False (Ref __iruid_305683)) (NA String) (Let __iruid_305729 (GetField rsid (Ref __iruid_305728)) (If (ApplySpecial land () Boolean (IsNA (Ref __iruid_305727)) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_305729)))) (Ref __iruid_305729) (Ref __iruid_305727))))) (__entries (Let __iruid_305730 (ToDict (StreamMap __iruid_305731 (StreamRange False (I32 0) (ArrayLen (Ref __iruid_305726)) (I32 1)) (MakeTuple (0 1) (ArrayRef (Ref __iruid_305726) (If (ApplyComparisonOp LT (Ref __iruid_305731) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305726)) (Ref __iruid_305731)) (Ref __iruid_305731)) (Str " File \"/t...")) (Ref __iruid_305731)))) (ToArray (StreamFlatMap __iruid_305732 (StreamRange False (I32 0) (ArrayLen (Ref __iruid_305683)) (I32 1)) (ToStream False (If (IsNA (GetField __entries (ArrayRef (Ref __iruid_305683) (If (ApplyComparisonOp LT (Ref __iruid_305732) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305683)) (Ref __iruid_305732)) (Ref __iruid_305732)) (Str " File \"/t...")))) (ToArray (StreamMap __iruid_305733 (StreamRange False (I32 0) (ArrayLen (GetField __cols (Let __iruid_305734 (GetField g (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0)) (ArrayRef (Ref __iruid_305734) (If (ApplyComparisonOp LT (Ref __iruid_305732) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305734)) (Ref __iruid_305732)) (Ref __iruid_305732)) (Str " File \"/t..."))))) (I32 1)) (NA Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}))) (Let __iruid_305735 (GetField local (Ref __iruid_305720)) (Let __iruid_305736 (ToArray (StreamMap __iruid_305737 (StreamRange False (I32 0) (ArrayLen (ArrayRef (Ref __iruid_305735) (If (ApplyComparisonOp LT (Ref __iruid_305732) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305735)) (Ref __iruid_305732)) (Ref __iruid_305732)) (Str " File \"/t..."))) (I32 1)) (Let __iruid_305738 (ArrayRef (Ref __iruid_305735) (If (ApplyComparisonOp LT (Ref __iruid_305732) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305735)) (Ref __iruid_305732)) (Ref __iruid_305732)) (Str " File \"/t...")) (Let __iruid_305739 (ArrayRef (Ref __iruid_305738) (If (ApplyComparisonOp LT (Ref __iruid_305737) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305738)) (Ref __iruid_305737)) (Ref __iruid_305737)) (Str " File \"/t...")) (If (IsNA (Ref __iruid_305730)) (NA Int32) (Let __iruid_305740 (LowerBoundOnOrderedCollection True (Ref __iruid_305730) (Ref __iruid_305739)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_305740) (ArrayLen (CastToArray (Ref __iruid_305730)))) (Die Int32 -1 (Apply concat () String (Str "Key '") (Apply concat () String (Apply str () String (Ref __iruid_305739)) (Apply concat () String (Str "' not f...") (Apply str () String (ToArray (StreamMap __iruid_305741 (ToStream False (Ref __iruid_305730)) (GetField key (Ref __iruid_305741))))))))) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef (CastToArray (Ref __iruid_305730)) (Ref __iruid_305740) (Str ""))) (Ref __iruid_305739)) (GetField value (ArrayRef (CastToArray (Ref __iruid_305730)) (Ref __iruid_305740) (Str ""))) (Die Int32 -1 (Apply concat () String (Str "Key '") (Apply concat () String (Apply str () String (Ref __iruid_305739)) (Apply concat () String (Str "' not f...") (Apply str () String (ToArray (StreamMap __iruid_305742 (ToStream False (Ref __iruid_305730)) (GetField key (Ref __iruid_305742))))))))))))))))) (ToArray (StreamMap __iruid_305743 (ToStream False (GetField __entries (Let __iruid_305744 (GetField data (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1)) (ArrayRef (Ref __iruid_305744) (If (ApplyComparisonOp LT (Ref __iruid_305732) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305744)) (Ref __iruid_305732)) (Ref __iruid_305732)) (Str " File \"/t..."))))) (InsertFields (Ref __iruid_305743) None (LA (ToArray (StreamMap __iruid_305745 (ToStream False (GetField LA (Ref __iruid_305743))) (ArrayRef (Ref __iruid_305736) (If (ApplyComparisonOp LT (Ref __iruid_305745) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305736)) (Ref __iruid_305745)) (Ref __iruid_305745)) (Str " File \"/t..."))))))))))))))))))))))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:53 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 703: (Coalesce (Let __iruid_305683 (GetField data (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1)) (Let __iruid_305684 (ToArray (StreamMap __iruid_305685 (ToStream False (Ref __iruid_305683)) (GetField alleles (Ref __iruid_305685)))) (Let __iruid_305686 (StreamFold __iruid_305687 __iruid_305688 (ToStream False (Ref __iruid_305684)) (Str "") (Let __iruid_305689 (Coalesce (ArrayRef (Ref __iruid_305688) (I32 0) (Str " File \"/t...")) (Str "")) (If (ApplyComparisonOp GT (Apply length () Int32 (Ref __iruid_305687)) (Apply length () Int32 (Ref __iruid_305689))) (Ref __iruid_305687) (Ref __iruid_305689)))) (Let __iruid_305690 (ToArray (StreamMap __iruid_305691 (ToStream False (Ref __iruid_305684)) (Let __iruid_305692 (ArrayRef (Ref __iruid_305691) (I32 0) (Str " File \"/t...")) (Let __iruid_305693 (MakeArray Array[String] (Ref __iruid_305686)) (Let __iruid_305694 (ToArray (StreamMap __iruid_305695 (StreamRange False (I32 1) (ArrayLen (Ref __iruid_305691)) (I32 1)) (Let __iruid_305696 (ArrayRef (Ref __iruid_305691) (Ref __iruid_305695) (Str "")) (Let __iruid_305697 (If (Apply regexMatch () Boolean (Str "^([ACGTNM])+$") (Ref __iruid_305692)) (If (Apply regexMatch () Boolean (Str "^([ACGTNM])+$") (Ref __iruid_305696)) (If (ApplyComparisonOp EQ (Apply length () Int32 (Ref __iruid_305692)) (Apply length () Int32 (Ref __iruid_305696))) (If (ApplyComparisonOp EQ (Apply length () Int32 (Ref __iruid_305692)) (I32 1)) (If (ApplyComparisonOp NEQ (Ref __iruid_305692) (Ref __iruid_305696)) (I32 1) (I32 0)) (If (ApplyComparisonOp EQ (ApplySpecial hamming () Int32 (Ref __iruid_305692) (Ref __iruid_305696)) (I32 1)) (I32 1) (I32 2))) (If (ApplySpecial land () Boolean (ApplySpecial land () Boolean (ApplyComparisonOp LT (Apply length () Int32 (Ref __iruid_305692)) (Apply length () Int32 (Ref __iruid_305696))) (ApplyComparisonOp EQ (Let __iruid_305698 (Apply length () Int32 (Ref __iruid_305692)) (Let __iruid_305699 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305698))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305698))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305698)))))) (I32 0)) (Apply substring () String (Ref __iruid_305692) (Ref __iruid_305699) (ApplyBinaryPrimOp Add (Ref __iruid_305699) (I32 1))))) (Let __iruid_305700 (Apply length () Int32 (Ref __iruid_305696)) (Let __iruid_305701 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305700))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305700))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305700)))))) (I32 0)) (Apply substring () String (Ref __iruid_305696) (Ref __iruid_305701) (ApplyBinaryPrimOp Add (Ref __iruid_305701) (I32 1))))))) (Apply endswith () Boolean (Ref __iruid_305696) (Let __iruid_305702 (Apply length () Int32 (Ref __iruid_305692)) (Let __iruid_305703 (Apply length () Int32 (Ref __iruid_305692)) (Let __iruid_305704 (If (ApplyComparisonOp LT (I32 1) (ApplyUnaryPrimOp Negate (Ref __iruid_305703))) (I32 0) (If (ApplyComparisonOp GTEQ (I32 1) (Ref __iruid_305703)) (Ref __iruid_305703) (I32 1))) (Let __iruid_305705 (If (ApplyComparisonOp LT (Ref __iruid_305702) (ApplyUnaryPrimOp Negate (Ref __iruid_305703))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305702) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305702) (Ref __iruid_305703)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305702) (Ref __iruid_305703)) (Ref __iruid_305703) (Ref __iruid_305702)))) (Apply substring () String (Ref __iruid_305692) (Ref __iruid_305704) (If (ApplyComparisonOp LT (Ref __iruid_305705) (Ref __iruid_305704)) (Ref __iruid_305704) (Ref __iruid_305705))))))))) (I32 3) (If (ApplySpecial land () Boolean (ApplyComparisonOp EQ (Let __iruid_305706 (Apply length () Int32 (Ref __iruid_305692)) (Let __iruid_305707 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305706))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305706))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305706)))))) (I32 0)) (Apply substring () String (Ref __iruid_305692) (Ref __iruid_305707) (ApplyBinaryPrimOp Add (Ref __iruid_305707) (I32 1))))) (Let __iruid_305708 (Apply length () Int32 (Ref __iruid_305696)) (Let __iruid_305709 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305708))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305708))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305708)))))) (I32 0)) (Apply substring () String (Ref __iruid_305696) (Ref __iruid_305709) (ApplyBinaryPrimOp Add (Ref __iruid_305709) (I32 1)))))) (Apply endswith () Boolean (Ref __iruid_305692) (Let __iruid_305710 (Apply length () Int32 (Ref __iruid_305696)) (Let __iruid_305711 (Apply length () Int32 (Ref __iruid_305696)) (Let __iruid_305712 (If (ApplyComparisonOp LT (I32 1) (ApplyUnaryPrimOp Negate (Ref __iruid_305711))) (I32 0) (If (ApplyComparisonOp GTEQ (I32 1) (Ref __iruid_305711)) (Ref __iruid_305711) (I32 1))) (Let __iruid_305713 (If (ApplyComparisonOp LT (Ref __iruid_305710) (ApplyUnaryPrimOp Negate (Ref __iruid_305711))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305710) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305710) (Ref __iruid_305711)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305710) (Ref __iruid_305711)) (Ref __iruid_305711) (Ref __iruid_305710)))) (Apply substring () String (Ref __iruid_305696) (Ref __iruid_305712) (If (ApplyComparisonOp LT (Ref __iruid_305713) (Ref __iruid_305712)) (Ref __iruid_305712) (Ref __iruid_305713))))))))) (I32 4) (I32 5)))) (If (ApplyComparisonOp EQ (Ref __iruid_305696) (Str "*")) (I32 6) (If (Apply regexMatch () Boolean (Str "(^\\.)|(\\.$...") (Ref __iruid_305696)) (I32 7) (I32 0)))) (I32 0)) (If (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplyComparisonOp EQ (Ref __iruid_305697) (I32 1)) (ApplyComparisonOp EQ (Ref __iruid_305697) (I32 3))) (ApplyComparisonOp EQ (Ref __iruid_305697) (I32 4))) (ApplyComparisonOp EQ (Ref __iruid_305697) (I32 2))) (ApplyComparisonOp EQ (Ref __iruid_305697) (I32 5))) (Apply concat () String (Ref __iruid_305696) (Let __iruid_305714 (Apply length () Int32 (Ref __iruid_305692)) (Let __iruid_305715 (Apply length () Int32 (Ref __iruid_305686)) (Let __iruid_305716 (Apply length () Int32 (Ref __iruid_305686)) (Let __iruid_305717 (If (ApplyComparisonOp LT (Ref __iruid_305714) (ApplyUnaryPrimOp Negate (Ref __iruid_305716))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305714) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305714) (Ref __iruid_305716)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305714) (Ref __iruid_305716)) (Ref __iruid_305716) (Ref __iruid_305714)))) (Let __iruid_305718 (If (ApplyComparisonOp LT (Ref __iruid_305715) (ApplyUnaryPrimOp Negate (Ref __iruid_305716))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305715) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305715) (Ref __iruid_305716)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305715) (Ref __iruid_305716)) (Ref __iruid_305716) (Ref __iruid_305715)))) (Apply substring () String (Ref __iruid_305686) (Ref __iruid_305717) (If (ApplyComparisonOp LT (Ref __iruid_305718) (Ref __iruid_305717)) (Ref __iruid_305717) (Ref __iruid_305718))))))))) (Ref __iruid_305696)))))) (If (IsNA (Ref __iruid_305693)) (NA Array[String]) (If (IsNA (Ref __iruid_305694)) (NA Array[String]) (ToArray (StreamFlatMap __iruid_305719 (MakeStream Stream[Array[String]] False (Ref __iruid_305693) (Ref __iruid_305694)) (ToStream False (Ref __iruid_305719))))))))))) (Let __iruid_305720 (MakeStruct (globl (Let __iruid_305721 (MakeArray Array[String] (Ref __iruid_305686)) (Let __iruid_305722 (CastToArray (ToSet (StreamFilter __iruid_305723 (ToStream False (ToSet (StreamFlatMap __iruid_305724 (ToStream False (Ref __iruid_305690)) (ToStream False (Ref __iruid_305724))))) (ApplyComparisonOp NEQWithNA (Ref __iruid_305723) (Ref __iruid_305686))))) (If (IsNA (Ref __iruid_305721)) (NA Array[String]) (If (IsNA (Ref __iruid_305722)) (NA Array[String]) (ToArray (StreamFlatMap __iruid_305725 (MakeStream Stream[Array[String]] False (Ref __iruid_305721) (Ref __iruid_305722)) (ToStream False (Ref __iruid_305725))))))))) (local (Ref __iruid_305690))) (Let __iruid_305726 (GetField globl (Ref __iruid_305720)) (MakeStruct (locus (GetField locus (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1))) (alleles (Ref __iruid_305726)) (rsid (StreamFold __iruid_305727 __iruid_305728 (ToStream False (Ref __iruid_305683)) (NA String) (Let __iruid_305729 (GetField rsid (Ref __iruid_305728)) (If (ApplySpecial land () Boolean (IsNA (Ref __iruid_305727)) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_305729)))) (Ref __iruid_305729) (Ref __iruid_305727))))) (__entries (Let __iruid_305730 (ToDict (StreamMap __iruid_305731 (StreamRange False (I32 0) (ArrayLen (Ref __iruid_305726)) (I32 1)) (MakeTuple (0 1) (ArrayRef (Ref __iruid_305726) (If (ApplyComparisonOp LT (Ref __iruid_305731) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305726)) (Ref __iruid_305731)) (Ref __iruid_305731)) (Str " File \"/t...")) (Ref __iruid_305731)))) (ToArray (StreamFlatMap __iruid_305732 (StreamRange False (I32 0) (ArrayLen (Ref __iruid_305683)) (I32 1)) (ToStream False (If (IsNA (GetField __entries (ArrayRef (Ref __iruid_305683) (If (ApplyComparisonOp LT (Ref __iruid_305732) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305683)) (Ref __iruid_305732)) (Ref __iruid_305732)) (Str " File \"/t...")))) (ToArray (StreamMap __iruid_305733 (StreamRange False (I32 0) (ArrayLen (GetField __cols (Let __iruid_305734 (GetField g (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0)) (ArrayRef (Ref __iruid_305734) (If (ApplyComparisonOp LT (Ref __iruid_305732) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305734)) (Ref __iruid_305732)) (Ref __iruid_305732)) (Str " File \"/t..."))))) (I32 1)) (NA Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}))) (Let __iruid_305735 (GetField local (Ref __iruid_305720)) (Let __iruid_305736 (ToArray (StreamMap __iruid_305737 (StreamRange False (I32 0) (ArrayLen (ArrayRef (Ref __iruid_305735) (If (ApplyComparisonOp LT (Ref __iruid_305732) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305735)) (Ref __iruid_305732)) (Ref __iruid_305732)) (Str " File \"/t..."))) (I32 1)) (Let __iruid_305738 (ArrayRef (Ref __iruid_305735) (If (ApplyComparisonOp LT (Ref __iruid_305732) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305735)) (Ref __iruid_305732)) (Ref __iruid_305732)) (Str " File \"/t...")) (Let __iruid_305739 (ArrayRef (Ref __iruid_305738) (If (ApplyComparisonOp LT (Ref __iruid_305737) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305738)) (Ref __iruid_305737)) (Ref __iruid_305737)) (Str " File \"/t...")) (If (IsNA (Ref __iruid_305730)) (NA Int32) (Let __iruid_305740 (LowerBoundOnOrderedCollection True (Ref __iruid_305730) (Ref __iruid_305739)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_305740) (ArrayLen (CastToArray (Ref __iruid_305730)))) (Die Int32 -1 (Apply concat () String (Str "Key '") (Apply concat () String (Apply str () String (Ref __iruid_305739)) (Apply concat () String (Str "' not f...") (Apply str () String (ToArray (StreamMap __iruid_305741 (ToStream False (Ref __iruid_305730)) (GetField key (Ref __iruid_305741))))))))) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef (CastToArray (Ref __iruid_305730)) (Ref __iruid_305740) (Str ""))) (Ref __iruid_305739)) (GetField value (ArrayRef (CastToArray (Ref __iruid_305730)) (Ref __iruid_305740) (Str ""))) (Die Int32 -1 (Apply concat () String (Str "Key '") (Apply concat () String (Apply str () String (Ref __iruid_305739)) (Apply concat () String (Str "' not f...") (Apply str () String (ToArray (StreamMap __iruid_305742 (ToStream False (Ref __iruid_305730)) (GetField key (Ref __iruid_305742))))))))))))))))) (ToArray (StreamMap __iruid_305743 (ToStream False (GetField __entries (Let __iruid_305744 (GetField data (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1)) (ArrayRef (Ref __iruid_305744) (If (ApplyComparisonOp LT (Ref __iruid_305732) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305744)) (Ref __iruid_305732)) (Ref __iruid_305732)) (Str " File \"/t..."))))) (InsertFields (Ref __iruid_305743) None (LA (ToArray (StreamMap __iruid_305745 (ToStream False (GetField LA (Ref __iruid_305743))) (ArrayRef (Ref __iruid_305736) (If (ApplyComparisonOp LT (Ref __iruid_305745) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305736)) (Ref __iruid_305745)) (Ref __iruid_305745)) (Str " File \"/t..."))))))))))))))))))))))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:54 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 703: (Coalesce (Let __iruid_305872 (GetField data (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1)) (Let __iruid_305873 (ToArray (StreamMap __iruid_305874 (ToStream False (Ref __iruid_305872)) (GetField alleles (Ref __iruid_305874)))) (Let __iruid_305875 (StreamFold __iruid_305876 __iruid_305877 (ToStream False (Ref __iruid_305873)) (Str "") (Let __iruid_305878 (Coalesce (ArrayRef (Ref __iruid_305877) (I32 0) (Str " File \"/t...")) (Str "")) (If (ApplyComparisonOp GT (Apply length () Int32 (Ref __iruid_305876)) (Apply length () Int32 (Ref __iruid_305878))) (Ref __iruid_305876) (Ref __iruid_305878)))) (Let __iruid_305879 (ToArray (StreamMap __iruid_305880 (ToStream False (Ref __iruid_305873)) (Let __iruid_305881 (ArrayRef (Ref __iruid_305880) (I32 0) (Str " File \"/t...")) (Let __iruid_305882 (MakeArray Array[String] (Ref __iruid_305875)) (Let __iruid_305883 (ToArray (StreamMap __iruid_305884 (StreamRange False (I32 1) (ArrayLen (Ref __iruid_305880)) (I32 1)) (Let __iruid_305885 (ArrayRef (Ref __iruid_305880) (Ref __iruid_305884) (Str "")) (Let __iruid_305886 (If (Apply regexMatch () Boolean (Str "^([ACGTNM])+$") (Ref __iruid_305881)) (If (Apply regexMatch () Boolean (Str "^([ACGTNM])+$") (Ref __iruid_305885)) (If (ApplyComparisonOp EQ (Apply length () Int32 (Ref __iruid_305881)) (Apply length () Int32 (Ref __iruid_305885))) (If (ApplyComparisonOp EQ (Apply length () Int32 (Ref __iruid_305881)) (I32 1)) (If (ApplyComparisonOp NEQ (Ref __iruid_305881) (Ref __iruid_305885)) (I32 1) (I32 0)) (If (ApplyComparisonOp EQ (ApplySpecial hamming () Int32 (Ref __iruid_305881) (Ref __iruid_305885)) (I32 1)) (I32 1) (I32 2))) (If (ApplySpecial land () Boolean (ApplySpecial land () Boolean (ApplyComparisonOp LT (Apply length () Int32 (Ref __iruid_305881)) (Apply length () Int32 (Ref __iruid_305885))) (ApplyComparisonOp EQ (Let __iruid_305887 (Apply length () Int32 (Ref __iruid_305881)) (Let __iruid_305888 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305887))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305887))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305887)))))) (I32 0)) (Apply substring () String (Ref __iruid_305881) (Ref __iruid_305888) (ApplyBinaryPrimOp Add (Ref __iruid_305888) (I32 1))))) (Let __iruid_305889 (Apply length () Int32 (Ref __iruid_305885)) (Let __iruid_305890 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305889))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305889))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305889)))))) (I32 0)) (Apply substring () String (Ref __iruid_305885) (Ref __iruid_305890) (ApplyBinaryPrimOp Add (Ref __iruid_305890) (I32 1))))))) (Apply endswith () Boolean (Ref __iruid_305885) (Let __iruid_305891 (Apply length () Int32 (Ref __iruid_305881)) (Let __iruid_305892 (Apply length () Int32 (Ref __iruid_305881)) (Let __iruid_305893 (If (ApplyComparisonOp LT (I32 1) (ApplyUnaryPrimOp Negate (Ref __iruid_305892))) (I32 0) (If (ApplyComparisonOp GTEQ (I32 1) (Ref __iruid_305892)) (Ref __iruid_305892) (I32 1))) (Let __iruid_305894 (If (ApplyComparisonOp LT (Ref __iruid_305891) (ApplyUnaryPrimOp Negate (Ref __iruid_305892))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305891) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305891) (Ref __iruid_305892)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305891) (Ref __iruid_305892)) (Ref __iruid_305892) (Ref __iruid_305891)))) (Apply substring () String (Ref __iruid_305881) (Ref __iruid_305893) (If (ApplyComparisonOp LT (Ref __iruid_305894) (Ref __iruid_305893)) (Ref __iruid_305893) (Ref __iruid_305894))))))))) (I32 3) (If (ApplySpecial land () Boolean (ApplyComparisonOp EQ (Let __iruid_305895 (Apply length () Int32 (Ref __iruid_305881)) (Let __iruid_305896 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305895))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305895))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305895)))))) (I32 0)) (Apply substring () String (Ref __iruid_305881) (Ref __iruid_305896) (ApplyBinaryPrimOp Add (Ref __iruid_305896) (I32 1))))) (Let __iruid_305897 (Apply length () Int32 (Ref __iruid_305885)) (Let __iruid_305898 (If (ApplySpecial lor () Boolean (ApplyComparisonOp LT (I32 0) (ApplyUnaryPrimOp Negate (Ref __iruid_305897))) (ApplyComparisonOp GTEQ (I32 0) (Ref __iruid_305897))) (Die Int32 -1 (Apply concat () String (Str "string ind...") (Apply concat () String (Str "0") (Apply concat () String (Str " / ") (Apply str () String (Ref __iruid_305897)))))) (I32 0)) (Apply substring () String (Ref __iruid_305885) (Ref __iruid_305898) (ApplyBinaryPrimOp Add (Ref __iruid_305898) (I32 1)))))) (Apply endswith () Boolean (Ref __iruid_305881) (Let __iruid_305899 (Apply length () Int32 (Ref __iruid_305885)) (Let __iruid_305900 (Apply length () Int32 (Ref __iruid_305885)) (Let __iruid_305901 (If (ApplyComparisonOp LT (I32 1) (ApplyUnaryPrimOp Negate (Ref __iruid_305900))) (I32 0) (If (ApplyComparisonOp GTEQ (I32 1) (Ref __iruid_305900)) (Ref __iruid_305900) (I32 1))) (Let __iruid_305902 (If (ApplyComparisonOp LT (Ref __iruid_305899) (ApplyUnaryPrimOp Negate (Ref __iruid_305900))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305899) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305899) (Ref __iruid_305900)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305899) (Ref __iruid_305900)) (Ref __iruid_305900) (Ref __iruid_305899)))) (Apply substring () String (Ref __iruid_305885) (Ref __iruid_305901) (If (ApplyComparisonOp LT (Ref __iruid_305902) (Ref __iruid_305901)) (Ref __iruid_305901) (Ref __iruid_305902))))))))) (I32 4) (I32 5)))) (If (ApplyComparisonOp EQ (Ref __iruid_305885) (Str "*")) (I32 6) (If (Apply regexMatch () Boolean (Str "(^\\.)|(\\.$...") (Ref __iruid_305885)) (I32 7) (I32 0)))) (I32 0)) (If (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplySpecial lor () Boolean (ApplyComparisonOp EQ (Ref __iruid_305886) (I32 1)) (ApplyComparisonOp EQ (Ref __iruid_305886) (I32 3))) (ApplyComparisonOp EQ (Ref __iruid_305886) (I32 4))) (ApplyComparisonOp EQ (Ref __iruid_305886) (I32 2))) (ApplyComparisonOp EQ (Ref __iruid_305886) (I32 5))) (Apply concat () String (Ref __iruid_305885) (Let __iruid_305903 (Apply length () Int32 (Ref __iruid_305881)) (Let __iruid_305904 (Apply length () Int32 (Ref __iruid_305875)) (Let __iruid_305905 (Apply length () Int32 (Ref __iruid_305875)) (Let __iruid_305906 (If (ApplyComparisonOp LT (Ref __iruid_305903) (ApplyUnaryPrimOp Negate (Ref __iruid_305905))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305903) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305903) (Ref __iruid_305905)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305903) (Ref __iruid_305905)) (Ref __iruid_305905) (Ref __iruid_305903)))) (Let __iruid_305907 (If (ApplyComparisonOp LT (Ref __iruid_305904) (ApplyUnaryPrimOp Negate (Ref __iruid_305905))) (I32 0) (If (ApplyComparisonOp LT (Ref __iruid_305904) (I32 0)) (ApplyBinaryPrimOp Add (Ref __iruid_305904) (Ref __iruid_305905)) (If (ApplyComparisonOp GTEQ (Ref __iruid_305904) (Ref __iruid_305905)) (Ref __iruid_305905) (Ref __iruid_305904)))) (Apply substring () String (Ref __iruid_305875) (Ref __iruid_305906) (If (ApplyComparisonOp LT (Ref __iruid_305907) (Ref __iruid_305906)) (Ref __iruid_305906) (Ref __iruid_305907))))))))) (Ref __iruid_305885)))))) (If (IsNA (Ref __iruid_305882)) (NA Array[String]) (If (IsNA (Ref __iruid_305883)) (NA Array[String]) (ToArray (StreamFlatMap __iruid_305908 (MakeStream Stream[Array[String]] False (Ref __iruid_305882) (Ref __iruid_305883)) (ToStream False (Ref __iruid_305908))))))))))) (Let __iruid_305909 (MakeStruct (globl (Let __iruid_305910 (MakeArray Array[String] (Ref __iruid_305875)) (Let __iruid_305911 (CastToArray (ToSet (StreamFilter __iruid_305912 (ToStream False (ToSet (StreamFlatMap __iruid_305913 (ToStream False (Ref __iruid_305879)) (ToStream False (Ref __iruid_305913))))) (ApplyComparisonOp NEQWithNA (Ref __iruid_305912) (Ref __iruid_305875))))) (If (IsNA (Ref __iruid_305910)) (NA Array[String]) (If (IsNA (Ref __iruid_305911)) (NA Array[String]) (ToArray (StreamFlatMap __iruid_305914 (MakeStream Stream[Array[String]] False (Ref __iruid_305910) (Ref __iruid_305911)) (ToStream False (Ref __iruid_305914))))))))) (local (Ref __iruid_305879))) (Let __iruid_305915 (GetField globl (Ref __iruid_305909)) (MakeStruct (locus (GetField locus (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1))) (alleles (Ref __iruid_305915)) (rsid (StreamFold __iruid_305916 __iruid_305917 (ToStream False (Ref __iruid_305872)) (NA String) (Let __iruid_305918 (GetField rsid (Ref __iruid_305917)) (If (ApplySpecial land () Boolean (IsNA (Ref __iruid_305916)) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_305918)))) (Ref __iruid_305918) (Ref __iruid_305916))))) (__entries (Let __iruid_305919 (ToDict (StreamMap __iruid_305920 (StreamRange False (I32 0) (ArrayLen (Ref __iruid_305915)) (I32 1)) (MakeTuple (0 1) (ArrayRef (Ref __iruid_305915) (If (ApplyComparisonOp LT (Ref __iruid_305920) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305915)) (Ref __iruid_305920)) (Ref __iruid_305920)) (Str " File \"/t...")) (Ref __iruid_305920)))) (ToArray (StreamFlatMap __iruid_305921 (StreamRange False (I32 0) (ArrayLen (Ref __iruid_305872)) (I32 1)) (ToStream False (If (IsNA (GetField __entries (ArrayRef (Ref __iruid_305872) (If (ApplyComparisonOp LT (Ref __iruid_305921) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305872)) (Ref __iruid_305921)) (Ref __iruid_305921)) (Str " File \"/t...")))) (ToArray (StreamMap __iruid_305922 (StreamRange False (I32 0) (ArrayLen (GetField __cols (Let __iruid_305923 (GetField g (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0)) (ArrayRef (Ref __iruid_305923) (If (ApplyComparisonOp LT (Ref __iruid_305921) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305923)) (Ref __iruid_305921)) (Ref __iruid_305921)) (Str " File \"/t..."))))) (I32 1)) (NA Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}))) (Let __iruid_305924 (GetField local (Ref __iruid_305909)) (Let __iruid_305925 (ToArray (StreamMap __iruid_305926 (StreamRange False (I32 0) (ArrayLen (ArrayRef (Ref __iruid_305924) (If (ApplyComparisonOp LT (Ref __iruid_305921) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305924)) (Ref __iruid_305921)) (Ref __iruid_305921)) (Str " File \"/t..."))) (I32 1)) (Let __iruid_305927 (ArrayRef (Ref __iruid_305924) (If (ApplyComparisonOp LT (Ref __iruid_305921) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305924)) (Ref __iruid_305921)) (Ref __iruid_305921)) (Str " File \"/t...")) (Let __iruid_305928 (ArrayRef (Ref __iruid_305927) (If (ApplyComparisonOp LT (Ref __iruid_305926) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305927)) (Ref __iruid_305926)) (Ref __iruid_305926)) (Str " File \"/t...")) (If (IsNA (Ref __iruid_305919)) (NA Int32) (Let __iruid_305929 (LowerBoundOnOrderedCollection True (Ref __iruid_305919) (Ref __iruid_305928)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_305929) (ArrayLen (CastToArray (Ref __iruid_305919)))) (Die Int32 -1 (Apply concat () String (Str "Key '") (Apply concat () String (Apply str () String (Ref __iruid_305928)) (Apply concat () String (Str "' not f...") (Apply str () String (ToArray (StreamMap __iruid_305930 (ToStream False (Ref __iruid_305919)) (GetField key (Ref __iruid_305930))))))))) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef (CastToArray (Ref __iruid_305919)) (Ref __iruid_305929) (Str ""))) (Ref __iruid_305928)) (GetField value (ArrayRef (CastToArray (Ref __iruid_305919)) (Ref __iruid_305929) (Str ""))) (Die Int32 -1 (Apply concat () String (Str "Key '") (Apply concat () String (Apply str () String (Ref __iruid_305928)) (Apply concat () String (Str "' not f...") (Apply str () String (ToArray (StreamMap __iruid_305931 (ToStream False (Ref __iruid_305919)) (GetField key (Ref __iruid_305931))))))))))))))))) (ToArray (StreamMap __iruid_305932 (ToStream False (GetField __entries (Let __iruid_305933 (GetField data (In +PCStruct{locus:+PCLocus(GRCh38),data:+PCArray[PCStruct{alleles:+PCArray[+PCString],rsid:PCString,__entries:+PCArray[+PCStruct{LA:+PCArray[+PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]}]} 1)) (ArrayRef (Ref __iruid_305933) (If (ApplyComparisonOp LT (Ref __iruid_305921) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305933)) (Ref __iruid_305921)) (Ref __iruid_305921)) (Str " File \"/t..."))))) (InsertFields (Ref __iruid_305932) None (LA (ToArray (StreamMap __iruid_305934 (ToStream False (GetField LA (Ref __iruid_305932))) (ArrayRef (Ref __iruid_305925) (If (ApplyComparisonOp LT (Ref __iruid_305934) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_305925)) (Ref __iruid_305934)) (Ref __iruid_305934)) (Str " File \"/t..."))))))))))))))))))))))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:54 root: INFO: encoder cache miss (865 hits, 4 misses, 0.995) 2021-04-12 16:03:54 root: INFO: instruction count: 3: __C636etypeEncode. 2021-04-12 16:03:54 root: INFO: instruction count: 5: __C636etypeEncode.apply 2021-04-12 16:03:54 root: INFO: instruction count: 103: __C636etypeEncode.__m637ENCODE_r_tuple_of_r_stringANDr_stringANDr_stringANDr_stringANDr_stringANDr_stringANDr_stringANDr_stringANDr_stringANDr_stringEND_TO_r_struct_of_r_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryEND 2021-04-12 16:03:54 root: INFO: instruction count: 18: __C636etypeEncode.__m638ENCODE_r_string_TO_r_binary 2021-04-12 16:03:54 MemoryStore: INFO: Block broadcast_22 stored as values in memory (estimated size 312.0 B, free 21.7 GB) 2021-04-12 16:03:54 MemoryStore: INFO: Block broadcast_22_piece0 stored as bytes in memory (estimated size 270.0 B, free 21.7 GB) 2021-04-12 16:03:54 BlockManagerInfo: INFO: Added broadcast_22_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 270.0 B, free: 21.7 GB) 2021-04-12 16:03:54 SparkContext: INFO: Created broadcast 22 from broadcast at SparkBackend.scala:259 2021-04-12 16:03:54 root: INFO: instruction count: 3: __C205Compiled. 2021-04-12 16:03:54 root: INFO: instruction count: 159: __C205Compiled.apply 2021-04-12 16:03:54 root: INFO: instruction count: 23: __C205Compiled.__m238length 2021-04-12 16:03:54 root: INFO: instruction count: 7: __C205Compiled.__m239ord_gt 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m240ord_gtNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 43: __C205Compiled.__m279regexMatch 2021-04-12 16:03:54 root: INFO: instruction count: 23: __C205Compiled.__m281length 2021-04-12 16:03:54 root: INFO: instruction count: 48: __C205Compiled.__m282ord_equiv 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m283ord_equivNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 41: __C205Compiled.__m284ord_equiv 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m285ord_equivNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 48: __C205Compiled.__m286ord_equiv 2021-04-12 16:03:54 root: INFO: instruction count: 15: __C205Compiled.__m287ord_equivNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 5: __C205Compiled.__m288ord_compareNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 92: __C205Compiled.__m289ord_compareNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 20: __C205Compiled.__m290ord_lt 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m291ord_ltNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 14: __C205Compiled.__m296ord_lt 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m297ord_ltNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 14: __C205Compiled.__m298ord_gteq 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m299ord_gteqNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 80: __C205Compiled.__m300concat 2021-04-12 16:03:54 root: INFO: instruction count: 56: __C205Compiled.__m306str 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m309setup_null 2021-04-12 16:03:54 root: INFO: instruction count: 62: __C205Compiled.__m312substring 2021-04-12 16:03:54 root: INFO: instruction count: 14: __C205Compiled.__m319ord_lt 2021-04-12 16:03:54 root: INFO: instruction count: 43: __C205Compiled.__m320endswith 2021-04-12 16:03:54 root: INFO: instruction count: 14: __C205Compiled.__m329ord_lt 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m330ord_ltNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 20: __C205Compiled.__m331ord_gteq 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m332ord_gteqNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 41: __C205Compiled.__m350ord_equiv 2021-04-12 16:03:54 root: INFO: instruction count: 15: __C205Compiled.__m351ord_equivNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 5: __C205Compiled.__m352ord_compareNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 92: __C205Compiled.__m353ord_compareNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 80: __C205Compiled.__m355concat 2021-04-12 16:03:54 root: INFO: instruction count: 14: __C205Compiled.__m366ord_gteq 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m367ord_gteqNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 7: __C205Compiled.__m370ord_lt 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m371ord_ltNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 7: __C205Compiled.__m372ord_gteq 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m373ord_gteqNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 62: __C205Compiled.__m374substring 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m379setup_jab 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m408setup_jab 2021-04-12 16:03:54 root: INFO: instruction count: 86: __C205Compiled.__m409discardNext 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m421setup_jab 2021-04-12 16:03:54 root: INFO: instruction count: 86: __C205Compiled.__m422discardNext 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m457setup_jab 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m495setup_jab 2021-04-12 16:03:54 root: INFO: instruction count: 112: __C205Compiled.__m496discardNext 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m524setup_jab 2021-04-12 16:03:54 root: INFO: instruction count: 118: __C205Compiled.__m575findElt 2021-04-12 16:03:54 root: INFO: instruction count: 48: __C205Compiled.__m576ord_compare 2021-04-12 16:03:54 root: INFO: instruction count: 69: __C205Compiled.__m578str 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m581setup_null 2021-04-12 16:03:54 root: INFO: instruction count: 65: __C205Compiled.__m585str 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m588setup_null 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C205Compiled.__m591setup_null 2021-04-12 16:03:54 root: INFO: instruction count: 9: __C205Compiled.setPartitionIndex 2021-04-12 16:03:54 root: INFO: instruction count: 4: __C205Compiled.addPartitionRegion 2021-04-12 16:03:54 root: INFO: instruction count: 4: __C205Compiled.setPool 2021-04-12 16:03:54 root: INFO: instruction count: 117: __C205Compiled.addLiterals 2021-04-12 16:03:54 root: INFO: instruction count: 86: __C205Compiled.__m634DECODE_r_struct_of_r_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryANDr_binaryEND_TO_r_tuple_of_r_stringANDr_stringANDr_stringANDr_stringANDr_stringANDr_stringANDr_stringANDr_stringANDr_stringANDr_stringEND 2021-04-12 16:03:54 root: INFO: instruction count: 33: __C205Compiled.__m635INPLACE_DECODE_r_binary_TO_r_string 2021-04-12 16:03:54 root: INFO: instruction count: 553: __C205Compiled.applyregion495_495 2021-04-12 16:03:54 root: INFO: instruction count: 209: __C205Compiled.applyregion591_602 2021-04-12 16:03:54 root: INFO: instruction count: 132: __C205Compiled.applyregion531_531 2021-04-12 16:03:54 root: INFO: instruction count: 273: __C205Compiled.applyregion729_741 2021-04-12 16:03:54 root: INFO: instruction count: 526: __C205Compiled.applyregion530_603 2021-04-12 16:03:54 root: INFO: instruction count: 500: __C205Compiled.applyregion493_497 2021-04-12 16:03:54 root: INFO: instruction count: 757: __C205Compiled.applyregion634_743 2021-04-12 16:03:54 root: INFO: instruction count: 219: __C205Compiled.applyregion618_633 2021-04-12 16:03:54 root: INFO: instruction count: 173: __C205Compiled.applyregion476_486 2021-04-12 16:03:54 root: INFO: instruction count: 163: __C205Compiled.applyregion501_508 2021-04-12 16:03:54 root: INFO: instruction count: 154: __C205Compiled.applyregion604_606 2021-04-12 16:03:54 root: INFO: instruction count: 124: __C205Compiled.applyregion610_617 2021-04-12 16:03:54 root: INFO: instruction count: 120: __C205Compiled.applyregion488_490 2021-04-12 16:03:54 root: INFO: instruction count: 1112: __C205Compiled.applyregion457_756 2021-04-12 16:03:54 root: INFO: instruction count: 244: __C205Compiled.applyregion380_431 2021-04-12 16:03:54 root: INFO: instruction count: 189: __C205Compiled.applyregion780_794 2021-04-12 16:03:54 root: INFO: instruction count: 112: __C205Compiled.applyregion336_346 2021-04-12 16:03:54 root: INFO: instruction count: 102: __C205Compiled.applyregion437_447 2021-04-12 16:03:54 root: INFO: instruction count: 121: __C205Compiled.applyregion357_379 2021-04-12 16:03:54 root: INFO: instruction count: 515: __C205Compiled.applyregion330_795 2021-04-12 16:03:54 root: INFO: instruction count: 695: __C205Compiled.applyregion241_285 2021-04-12 16:03:54 root: INFO: instruction count: 361: __C205Compiled.applyregion229_796 2021-04-12 16:03:54 root: INFO: instruction count: 271: __C205Compiled.applyregion63_119 2021-04-12 16:03:54 root: INFO: instruction count: 272: __C205Compiled.applyregion168_225 2021-04-12 16:03:54 root: INFO: instruction count: 262: __C205Compiled.applyregion41_62 2021-04-12 16:03:54 root: INFO: instruction count: 176: __C205Compiled.applyregion140_167 2021-04-12 16:03:54 root: INFO: instruction count: 162: __C205Compiled.applyregion967_987 2021-04-12 16:03:54 root: INFO: instruction count: 473: __C205Compiled.applyregion935_1041 2021-04-12 16:03:54 root: INFO: instruction count: 466: __C205Compiled.applyregion1042_1135 2021-04-12 16:03:54 root: INFO: instruction count: 437: __C205Compiled.applyregion1223_1309 2021-04-12 16:03:54 root: INFO: instruction count: 321: __C205Compiled.applyregion1168_1222 2021-04-12 16:03:54 root: INFO: instruction count: 67: __C205Compiled.applyregion1138_1152 2021-04-12 16:03:54 root: INFO: instruction count: 571: __C205Compiled.applyregion30_798 2021-04-12 16:03:54 root: INFO: instruction count: 568: __C205Compiled.applyregion886_1336 2021-04-12 16:03:54 root: INFO: instruction count: 633: __C205Compiled.applyregion827_877 2021-04-12 16:03:54 root: INFO: instruction count: 374: __C205Compiled.applyregion1417_1473 2021-04-12 16:03:54 root: INFO: instruction count: 102: __C205Compiled.applyregion810_820 2021-04-12 16:03:54 root: INFO: instruction count: 102: __C205Compiled.applyregion821_823 2021-04-12 16:03:54 root: INFO: instruction count: 97: __C205Compiled.applyregion1337_1359 2021-04-12 16:03:54 root: INFO: instruction count: 684: __C205Compiled.applyregion30_1475 2021-04-12 16:03:54 root: INFO: instruction count: 545: __C205Compiled.applyregion1_1476 2021-04-12 16:03:54 root: INFO: instruction count: 3: __C640applySpills. 2021-04-12 16:03:54 root: INFO: instruction count: 3: __C410sort_compare. 2021-04-12 16:03:54 root: INFO: instruction count: 35: __C410sort_compare.apply 2021-04-12 16:03:54 root: INFO: instruction count: 18: __C410sort_compare.apply 2021-04-12 16:03:54 root: INFO: instruction count: 86: __C410sort_compare.__m412sort 2021-04-12 16:03:54 root: INFO: instruction count: 48: __C410sort_compare.__m413ord_compare 2021-04-12 16:03:54 root: INFO: instruction count: 5: __C410sort_compare.__m414ord_compareNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 92: __C410sort_compare.__m415ord_compareNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 7: __C410sort_compare.__m416ord_lt 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C410sort_compare.__m417ord_ltNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 3: __C423sort_compare. 2021-04-12 16:03:54 root: INFO: instruction count: 35: __C423sort_compare.apply 2021-04-12 16:03:54 root: INFO: instruction count: 18: __C423sort_compare.apply 2021-04-12 16:03:54 root: INFO: instruction count: 86: __C423sort_compare.__m425sort 2021-04-12 16:03:54 root: INFO: instruction count: 48: __C423sort_compare.__m426ord_compare 2021-04-12 16:03:54 root: INFO: instruction count: 5: __C423sort_compare.__m427ord_compareNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 92: __C423sort_compare.__m428ord_compareNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 7: __C423sort_compare.__m429ord_lt 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C423sort_compare.__m430ord_ltNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 3: __C497sort_compare. 2021-04-12 16:03:54 root: INFO: instruction count: 11: __C497sort_compare.apply 2021-04-12 16:03:54 root: INFO: instruction count: 18: __C497sort_compare.apply 2021-04-12 16:03:54 root: INFO: instruction count: 112: __C497sort_compare.__m499sort 2021-04-12 16:03:54 root: INFO: instruction count: 48: __C497sort_compare.__m500ord_compare 2021-04-12 16:03:54 root: INFO: instruction count: 5: __C497sort_compare.__m501ord_compareNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 92: __C497sort_compare.__m502ord_compareNonnull 2021-04-12 16:03:54 root: INFO: instruction count: 7: __C497sort_compare.__m503ord_lt 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C497sort_compare.__m504ord_ltNonnull 2021-04-12 16:03:54 root: INFO: encoder cache miss (865 hits, 5 misses, 0.994) 2021-04-12 16:03:54 root: INFO: instruction count: 3: __C727etypeEncode. 2021-04-12 16:03:54 root: INFO: instruction count: 5: __C727etypeEncode.apply 2021-04-12 16:03:54 root: INFO: instruction count: 13: __C727etypeEncode.__m728ENCODE_r_tuple_of_r_array_of_r_tuple_of_r_array_of_r_tuple_of_r_stringENDENDEND_TO_r_struct_of_r_array_of_r_struct_of_r_array_of_r_struct_of_r_binaryENDENDEND 2021-04-12 16:03:54 root: INFO: instruction count: 45: __C727etypeEncode.__m729ENCODE_r_array_of_r_tuple_of_r_array_of_r_tuple_of_r_stringENDEND_TO_r_array_of_r_struct_of_r_array_of_r_struct_of_r_binaryENDEND 2021-04-12 16:03:54 root: INFO: instruction count: 13: __C727etypeEncode.__m730ENCODE_r_tuple_of_r_array_of_r_tuple_of_r_stringENDEND_TO_r_struct_of_r_array_of_r_struct_of_r_binaryENDEND 2021-04-12 16:03:54 root: INFO: instruction count: 45: __C727etypeEncode.__m731ENCODE_r_array_of_r_tuple_of_r_stringEND_TO_r_array_of_r_struct_of_r_binaryEND 2021-04-12 16:03:54 root: INFO: instruction count: 13: __C727etypeEncode.__m732ENCODE_r_tuple_of_r_stringEND_TO_r_struct_of_r_binaryEND 2021-04-12 16:03:54 root: INFO: instruction count: 18: __C727etypeEncode.__m733ENCODE_r_string_TO_r_binary 2021-04-12 16:03:54 root: INFO: decoder cache miss (99 hits, 2 misses, 0.980 2021-04-12 16:03:54 root: INFO: instruction count: 3: __C734etypeDecode. 2021-04-12 16:03:54 root: INFO: instruction count: 5: __C734etypeDecode.apply 2021-04-12 16:03:54 root: INFO: instruction count: 23: __C734etypeDecode.__m735DECODE_r_struct_of_r_array_of_r_struct_of_r_array_of_r_struct_of_r_binaryENDENDEND_TO_r_tuple_of_r_array_of_r_tuple_of_r_array_of_r_tuple_of_r_stringENDENDEND 2021-04-12 16:03:54 root: INFO: instruction count: 64: __C734etypeDecode.__m736INPLACE_DECODE_r_array_of_r_struct_of_r_array_of_r_struct_of_r_binaryENDEND_TO_r_array_of_r_tuple_of_r_array_of_r_tuple_of_r_stringENDEND 2021-04-12 16:03:54 root: INFO: instruction count: 15: __C734etypeDecode.__m737INPLACE_DECODE_r_struct_of_r_array_of_r_struct_of_r_binaryENDEND_TO_r_tuple_of_r_array_of_r_tuple_of_r_stringENDEND 2021-04-12 16:03:54 root: INFO: instruction count: 64: __C734etypeDecode.__m738INPLACE_DECODE_r_array_of_r_struct_of_r_binaryEND_TO_r_array_of_r_tuple_of_r_stringEND 2021-04-12 16:03:54 root: INFO: instruction count: 15: __C734etypeDecode.__m739INPLACE_DECODE_r_struct_of_r_binaryEND_TO_r_tuple_of_r_stringEND 2021-04-12 16:03:54 root: INFO: instruction count: 33: __C734etypeDecode.__m740INPLACE_DECODE_r_binary_TO_r_string 2021-04-12 16:03:54 MemoryStore: INFO: Block broadcast_23 stored as values in memory (estimated size 10.7 KB, free 21.7 GB) 2021-04-12 16:03:54 MemoryStore: INFO: Block broadcast_23_piece0 stored as bytes in memory (estimated size 3.2 KB, free 21.7 GB) 2021-04-12 16:03:54 BlockManagerInfo: INFO: Added broadcast_23_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 3.2 KB, free: 21.7 GB) 2021-04-12 16:03:54 SparkContext: INFO: Created broadcast 23 from broadcast at SparkBackend.scala:259 2021-04-12 16:03:54 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 14: (Coalesce (InsertFields (SelectFields () (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_270745 (ToStream False (GetField g (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0))) (ToStream False (GetField __cols (Ref __iruid_270745))))))) (Die Struct{__cols:Array[Struct{s:String}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:54 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 14: (Coalesce (InsertFields (SelectFields () (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_305937 (ToStream False (GetField g (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0))) (ToStream False (GetField __cols (Ref __iruid_305937))))))) (Die Struct{__cols:Array[Struct{s:String}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:54 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 14: (Coalesce (InsertFields (SelectFields () (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_305937 (ToStream False (GetField g (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0))) (ToStream False (GetField __cols (Ref __iruid_305937))))))) (Die Struct{__cols:Array[Struct{s:String}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:54 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 14: (Coalesce (InsertFields (SelectFields () (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_305940 (ToStream False (GetField g (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0))) (ToStream False (GetField __cols (Ref __iruid_305940))))))) (Die Struct{__cols:Array[Struct{s:String}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:54 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 14: (Coalesce (InsertFields (SelectFields () (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_305940 (ToStream False (GetField g (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0))) (ToStream False (GetField __cols (Ref __iruid_305940))))))) (Die Struct{__cols:Array[Struct{s:String}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:54 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 14: (Coalesce (InsertFields (SelectFields () (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0)) ("__cols") (__cols (ToArray (StreamFlatMap __iruid_305943 (ToStream False (GetField g (In +PCStruct{g:+PCArray[+PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]}]} 0))) (ToStream False (GetField __cols (Ref __iruid_305943))))))) (Die Struct{__cols:Array[Struct{s:String}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:54 root: INFO: encoder cache miss (865 hits, 6 misses, 0.993) 2021-04-12 16:03:54 root: INFO: instruction count: 3: __C765etypeEncode. 2021-04-12 16:03:54 root: INFO: instruction count: 5: __C765etypeEncode.apply 2021-04-12 16:03:54 root: INFO: instruction count: 13: __C765etypeEncode.__m766ENCODE_r_tuple_of_r_stringEND_TO_r_struct_of_r_binaryEND 2021-04-12 16:03:54 root: INFO: instruction count: 18: __C765etypeEncode.__m767ENCODE_r_string_TO_r_binary 2021-04-12 16:03:54 MemoryStore: INFO: Block broadcast_24 stored as values in memory (estimated size 152.0 B, free 21.7 GB) 2021-04-12 16:03:54 MemoryStore: INFO: Block broadcast_24_piece0 stored as bytes in memory (estimated size 110.0 B, free 21.7 GB) 2021-04-12 16:03:54 BlockManagerInfo: INFO: Added broadcast_24_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 110.0 B, free: 21.7 GB) 2021-04-12 16:03:54 SparkContext: INFO: Created broadcast 24 from broadcast at SparkBackend.scala:259 2021-04-12 16:03:54 root: INFO: instruction count: 3: __C741Compiled. 2021-04-12 16:03:54 root: INFO: instruction count: 308: __C741Compiled.apply 2021-04-12 16:03:54 root: INFO: instruction count: 12: __C741Compiled.__m749setup_jab 2021-04-12 16:03:54 root: INFO: instruction count: 9: __C741Compiled.setPartitionIndex 2021-04-12 16:03:54 root: INFO: instruction count: 4: __C741Compiled.addPartitionRegion 2021-04-12 16:03:54 root: INFO: instruction count: 4: __C741Compiled.setPool 2021-04-12 16:03:54 root: INFO: instruction count: 36: __C741Compiled.addLiterals 2021-04-12 16:03:54 root: INFO: instruction count: 23: __C741Compiled.__m763DECODE_r_struct_of_r_binaryEND_TO_r_tuple_of_r_stringEND 2021-04-12 16:03:54 root: INFO: instruction count: 33: __C741Compiled.__m764INPLACE_DECODE_r_binary_TO_r_string 2021-04-12 16:03:57 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 20: (Coalesce (If (IsNA (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (ArrayLen (GetField __cols (In +PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]} 0)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:57 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 20: (Coalesce (If (IsNA (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (ArrayLen (GetField __cols (In +PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]} 0)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:57 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 20: (Coalesce (If (IsNA (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (ArrayLen (GetField __cols (In +PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]} 0)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:57 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 20: (Coalesce (If (IsNA (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (ArrayLen (GetField __cols (In +PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]} 0)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:57 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 20: (Coalesce (If (IsNA (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (ArrayLen (GetField __cols (In +PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]} 0)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:57 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 20: (Coalesce (If (IsNA (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "missing en...")) (If (ApplyComparisonOp NEQWithNA (ArrayLen (GetField __entries (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (ArrayLen (GetField __cols (In +PCStruct{__cols:+PCArray[+PCStruct{s:+PCString}]} 0)))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "length mis...")) (In +PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[PCString],rsid:PCString,__entries:+PCArray[PCStruct{LA:+PCArray[PInt32],LGT:PCCall,LAD:PCArray[PInt32],LPGT:PCCall,LPL:PCArray[PInt32],RGQ:PInt32,END:PInt32,gvcf_info:PCStruct{BaseQRankSum:PFloat64,ClippingRankSum:PFloat64,DS:+PBoolean,ExcessHet:PFloat64,HaplotypeScore:PFloat64,InbreedingCoeff:PFloat64,MLEAC:PCArray[PInt32],MLEAF:PCArray[PFloat64],MQ:PFloat64,MQ0:PInt32,MQRankSum:PFloat64,RAW_MQ:PFloat64,ReadPosRankSum:PFloat64,VariantType:PCString},AB:PFloat64,DP:PInt32,GQ:PInt32,MIN_DP:PInt32,MQ0:PInt32,PID:PCString,SB:PCArray[PInt32]}]} 1))) (Die Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:String,__entries:Array[Struct{LA:Array[Int32],LGT:Call,LAD:Array[Int32],LPGT:Call,LPL:Array[Int32],RGQ:Int32,END:Int32,gvcf_info:Struct{BaseQRankSum:Float64,ClippingRankSum:Float64,DS:Boolean,ExcessHet:Float64,HaplotypeScore:Float64,InbreedingCoeff:Float64,MLEAC:Array[Int32],MLEAF:Array[Float64],MQ:Float64,MQ0:Int32,MQRankSum:Float64,RAW_MQ:Float64,ReadPosRankSum:Float64,VariantType:String},AB:Float64,DP:Int32,GQ:Int32,MIN_DP:Int32,MQ0:Int32,PID:String,SB:Array[Int32]}]} -1 (Str "Internal e..."))) 2021-04-12 16:03:57 root: INFO: encoder cache miss (865 hits, 7 misses, 0.992) 2021-04-12 16:03:57 root: INFO: instruction count: 3: __C779etypeEncode. 2021-04-12 16:03:57 root: INFO: instruction count: 5: __C779etypeEncode.apply 2021-04-12 16:03:57 root: INFO: instruction count: 33: __C779etypeEncode.__m780ENCODE_r_tuple_of_r_stringANDr_stringANDr_stringEND_TO_r_struct_of_r_binaryANDr_binaryANDr_binaryEND 2021-04-12 16:03:57 root: INFO: instruction count: 18: __C779etypeEncode.__m781ENCODE_r_string_TO_r_binary 2021-04-12 16:03:57 MemoryStore: INFO: Block broadcast_25 stored as values in memory (estimated size 312.0 B, free 21.7 GB) 2021-04-12 16:03:57 MemoryStore: INFO: Block broadcast_25_piece0 stored as bytes in memory (estimated size 228.0 B, free 21.7 GB) 2021-04-12 16:03:57 BlockManagerInfo: INFO: Added broadcast_25_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 228.0 B, free: 21.7 GB) 2021-04-12 16:03:57 SparkContext: INFO: Created broadcast 25 from broadcast at SparkBackend.scala:259 2021-04-12 16:03:57 root: INFO: instruction count: 3: __C768Compiled. 2021-04-12 16:03:57 root: INFO: instruction count: 111: __C768Compiled.apply 2021-04-12 16:03:57 root: INFO: instruction count: 34: __C768Compiled.__m770ord_equiv 2021-04-12 16:03:57 root: INFO: instruction count: 12: __C768Compiled.__m771ord_equivNonnull 2021-04-12 16:03:57 root: INFO: instruction count: 9: __C768Compiled.setPartitionIndex 2021-04-12 16:03:57 root: INFO: instruction count: 4: __C768Compiled.addPartitionRegion 2021-04-12 16:03:57 root: INFO: instruction count: 4: __C768Compiled.setPool 2021-04-12 16:03:57 root: INFO: instruction count: 54: __C768Compiled.addLiterals 2021-04-12 16:03:57 root: INFO: instruction count: 37: __C768Compiled.__m777DECODE_r_struct_of_r_binaryANDr_binaryANDr_binaryEND_TO_r_tuple_of_r_stringANDr_stringANDr_stringEND 2021-04-12 16:03:57 root: INFO: instruction count: 33: __C768Compiled.__m778INPLACE_DECODE_r_binary_TO_r_string 2021-04-12 16:03:57 root: INFO: encoder cache hit 2021-04-12 16:03:57 root: INFO: decoder cache hit 2021-04-12 16:03:57 MemoryStore: INFO: Block broadcast_26 stored as values in memory (estimated size 7.8 KB, free 21.7 GB) 2021-04-12 16:03:57 MemoryStore: INFO: Block broadcast_26_piece0 stored as bytes in memory (estimated size 2.9 KB, free 21.7 GB) 2021-04-12 16:03:57 BlockManagerInfo: INFO: Added broadcast_26_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 2.9 KB, free: 21.7 GB) 2021-04-12 16:03:57 SparkContext: INFO: Created broadcast 26 from broadcast at SparkBackend.scala:259 2021-04-12 16:03:57 root: INFO: decoder cache hit 2021-04-12 16:03:57 root: INFO: decoder cache hit 2021-04-12 16:03:57 root: INFO: decoder cache hit 2021-04-12 16:03:57 root: INFO: decoder cache hit 2021-04-12 16:03:57 root: INFO: decoder cache hit 2021-04-12 16:03:57 root: INFO: decoder cache hit 2021-04-12 16:03:57 root: INFO: decoder cache hit 2021-04-12 16:03:57 root: INFO: decoder cache hit 2021-04-12 16:03:57 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:58 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:03:59 root: INFO: decoder cache hit 2021-04-12 16:04:03 root: INFO: encoder cache hit 2021-04-12 16:04:03 root: INFO: decoder cache hit 2021-04-12 16:04:03 MemoryStore: INFO: Block broadcast_27 stored as values in memory (estimated size 10.3 KB, free 21.7 GB) 2021-04-12 16:04:03 MemoryStore: INFO: Block broadcast_27_piece0 stored as bytes in memory (estimated size 3.1 KB, free 21.7 GB) 2021-04-12 16:04:03 BlockManagerInfo: INFO: Added broadcast_27_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 3.1 KB, free: 21.7 GB) 2021-04-12 16:04:03 SparkContext: INFO: Created broadcast 27 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:06 root: INFO: encoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 MemoryStore: INFO: Block broadcast_28 stored as values in memory (estimated size 7.7 KB, free 21.7 GB) 2021-04-12 16:04:06 MemoryStore: INFO: Block broadcast_28_piece0 stored as bytes in memory (estimated size 2.9 KB, free 21.7 GB) 2021-04-12 16:04:06 BlockManagerInfo: INFO: Added broadcast_28_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 2.9 KB, free: 21.7 GB) 2021-04-12 16:04:06 SparkContext: INFO: Created broadcast 28 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:06 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:07 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:08 root: INFO: decoder cache hit 2021-04-12 16:04:12 root: INFO: encoder cache hit 2021-04-12 16:04:12 root: INFO: decoder cache hit 2021-04-12 16:04:12 MemoryStore: INFO: Block broadcast_29 stored as values in memory (estimated size 10.3 KB, free 21.7 GB) 2021-04-12 16:04:12 MemoryStore: INFO: Block broadcast_29_piece0 stored as bytes in memory (estimated size 3.1 KB, free 21.7 GB) 2021-04-12 16:04:12 BlockManagerInfo: INFO: Added broadcast_29_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 3.1 KB, free: 21.7 GB) 2021-04-12 16:04:12 SparkContext: INFO: Created broadcast 29 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:15 root: INFO: encoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 MemoryStore: INFO: Block broadcast_30 stored as values in memory (estimated size 7.7 KB, free 21.7 GB) 2021-04-12 16:04:15 MemoryStore: INFO: Block broadcast_30_piece0 stored as bytes in memory (estimated size 2.9 KB, free 21.7 GB) 2021-04-12 16:04:15 BlockManagerInfo: INFO: Added broadcast_30_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 2.9 KB, free: 21.7 GB) 2021-04-12 16:04:15 SparkContext: INFO: Created broadcast 30 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:15 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:16 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:17 root: INFO: decoder cache hit 2021-04-12 16:04:18 ExecutorAllocationManager: INFO: Request to remove executorIds: 3 2021-04-12 16:04:18 YarnClientSchedulerBackend: INFO: Requesting to kill executor(s) 3 2021-04-12 16:04:18 YarnClientSchedulerBackend: INFO: Actual list of executor(s) to be killed is 3 2021-04-12 16:04:18 ExecutorAllocationManager: INFO: Removing executor 3 because it has been idle for 60 seconds (new desired total will be 2) 2021-04-12 16:04:18 ExecutorAllocationManager: INFO: Request to remove executorIds: 2, 1 2021-04-12 16:04:18 YarnClientSchedulerBackend: INFO: Requesting to kill executor(s) 2 2021-04-12 16:04:18 YarnClientSchedulerBackend: INFO: Actual list of executor(s) to be killed is 2 2021-04-12 16:04:18 ExecutorAllocationManager: INFO: Removing executor 2 because it has been idle for 60 seconds (new desired total will be 1) 2021-04-12 16:04:19 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Disabling executor 3. 2021-04-12 16:04:19 DAGScheduler: INFO: Executor lost: 3 (epoch 0) 2021-04-12 16:04:19 BlockManagerMasterEndpoint: INFO: Trying to remove executor 3 from BlockManagerMaster. 2021-04-12 16:04:19 BlockManagerMasterEndpoint: INFO: Removing block manager BlockManagerId(3, berylc-w-0.us-central1-b.c.human-genetics-001.internal, 34853, None) 2021-04-12 16:04:19 BlockManagerMaster: INFO: Removed 3 successfully in removeExecutor 2021-04-12 16:04:19 YarnScheduler: INFO: Executor 3 on berylc-w-0.us-central1-b.c.human-genetics-001.internal killed by driver. 2021-04-12 16:04:19 ExecutorAllocationManager: INFO: Existing executor 3 has been removed (new total is 2) 2021-04-12 16:04:20 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Disabling executor 2. 2021-04-12 16:04:20 DAGScheduler: INFO: Executor lost: 2 (epoch 0) 2021-04-12 16:04:20 BlockManagerMasterEndpoint: INFO: Trying to remove executor 2 from BlockManagerMaster. 2021-04-12 16:04:20 BlockManagerMasterEndpoint: INFO: Removing block manager BlockManagerId(2, berylc-w-0.us-central1-b.c.human-genetics-001.internal, 45495, None) 2021-04-12 16:04:20 BlockManagerMaster: INFO: Removed 2 successfully in removeExecutor 2021-04-12 16:04:20 YarnScheduler: INFO: Executor 2 on berylc-w-0.us-central1-b.c.human-genetics-001.internal killed by driver. 2021-04-12 16:04:20 ExecutorAllocationManager: INFO: Existing executor 2 has been removed (new total is 1) 2021-04-12 16:04:21 root: INFO: encoder cache hit 2021-04-12 16:04:21 root: INFO: decoder cache hit 2021-04-12 16:04:21 MemoryStore: INFO: Block broadcast_31 stored as values in memory (estimated size 10.3 KB, free 21.7 GB) 2021-04-12 16:04:21 MemoryStore: INFO: Block broadcast_31_piece0 stored as bytes in memory (estimated size 3.1 KB, free 21.7 GB) 2021-04-12 16:04:21 BlockManagerInfo: INFO: Added broadcast_31_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 3.1 KB, free: 21.7 GB) 2021-04-12 16:04:21 SparkContext: INFO: Created broadcast 31 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:24 root: INFO: encoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 MemoryStore: INFO: Block broadcast_32 stored as values in memory (estimated size 7.7 KB, free 21.7 GB) 2021-04-12 16:04:24 MemoryStore: INFO: Block broadcast_32_piece0 stored as bytes in memory (estimated size 2.9 KB, free 21.7 GB) 2021-04-12 16:04:24 BlockManagerInfo: INFO: Added broadcast_32_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 2.9 KB, free: 21.7 GB) 2021-04-12 16:04:24 SparkContext: INFO: Created broadcast 32 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:24 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:25 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:26 root: INFO: decoder cache hit 2021-04-12 16:04:30 root: INFO: encoder cache hit 2021-04-12 16:04:30 root: INFO: decoder cache hit 2021-04-12 16:04:30 MemoryStore: INFO: Block broadcast_33 stored as values in memory (estimated size 10.3 KB, free 21.7 GB) 2021-04-12 16:04:30 MemoryStore: INFO: Block broadcast_33_piece0 stored as bytes in memory (estimated size 3.1 KB, free 21.7 GB) 2021-04-12 16:04:30 BlockManagerInfo: INFO: Added broadcast_33_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 3.1 KB, free: 21.7 GB) 2021-04-12 16:04:30 SparkContext: INFO: Created broadcast 33 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:33 root: INFO: encoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 MemoryStore: INFO: Block broadcast_34 stored as values in memory (estimated size 7.7 KB, free 21.7 GB) 2021-04-12 16:04:33 MemoryStore: INFO: Block broadcast_34_piece0 stored as bytes in memory (estimated size 2.9 KB, free 21.7 GB) 2021-04-12 16:04:33 BlockManagerInfo: INFO: Added broadcast_34_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 2.9 KB, free: 21.7 GB) 2021-04-12 16:04:33 SparkContext: INFO: Created broadcast 34 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:33 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:34 root: INFO: decoder cache hit 2021-04-12 16:04:35 root: INFO: decoder cache hit 2021-04-12 16:04:35 root: INFO: decoder cache hit 2021-04-12 16:04:35 root: INFO: decoder cache hit 2021-04-12 16:04:35 root: INFO: decoder cache hit 2021-04-12 16:04:35 root: INFO: decoder cache hit 2021-04-12 16:04:35 root: INFO: decoder cache hit 2021-04-12 16:04:35 root: INFO: decoder cache hit 2021-04-12 16:04:35 root: INFO: decoder cache hit 2021-04-12 16:04:35 root: INFO: decoder cache hit 2021-04-12 16:04:35 root: INFO: decoder cache hit 2021-04-12 16:04:35 root: INFO: decoder cache hit 2021-04-12 16:04:39 root: INFO: encoder cache hit 2021-04-12 16:04:39 root: INFO: decoder cache hit 2021-04-12 16:04:39 MemoryStore: INFO: Block broadcast_35 stored as values in memory (estimated size 10.3 KB, free 21.7 GB) 2021-04-12 16:04:39 MemoryStore: INFO: Block broadcast_35_piece0 stored as bytes in memory (estimated size 3.2 KB, free 21.7 GB) 2021-04-12 16:04:39 BlockManagerInfo: INFO: Added broadcast_35_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 3.2 KB, free: 21.7 GB) 2021-04-12 16:04:39 SparkContext: INFO: Created broadcast 35 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:42 root: INFO: encoder cache hit 2021-04-12 16:04:42 root: INFO: decoder cache hit 2021-04-12 16:04:42 MemoryStore: INFO: Block broadcast_36 stored as values in memory (estimated size 7.7 KB, free 21.7 GB) 2021-04-12 16:04:42 MemoryStore: INFO: Block broadcast_36_piece0 stored as bytes in memory (estimated size 2.9 KB, free 21.7 GB) 2021-04-12 16:04:42 BlockManagerInfo: INFO: Added broadcast_36_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 2.9 KB, free: 21.7 GB) 2021-04-12 16:04:42 SparkContext: INFO: Created broadcast 36 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:42 root: INFO: decoder cache hit 2021-04-12 16:04:42 root: INFO: decoder cache hit 2021-04-12 16:04:42 root: INFO: decoder cache hit 2021-04-12 16:04:42 root: INFO: decoder cache hit 2021-04-12 16:04:42 root: INFO: decoder cache hit 2021-04-12 16:04:42 root: INFO: decoder cache hit 2021-04-12 16:04:42 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:43 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:44 root: INFO: decoder cache hit 2021-04-12 16:04:48 root: INFO: encoder cache hit 2021-04-12 16:04:48 root: INFO: decoder cache hit 2021-04-12 16:04:48 MemoryStore: INFO: Block broadcast_37 stored as values in memory (estimated size 10.3 KB, free 21.7 GB) 2021-04-12 16:04:48 MemoryStore: INFO: Block broadcast_37_piece0 stored as bytes in memory (estimated size 3.1 KB, free 21.7 GB) 2021-04-12 16:04:48 BlockManagerInfo: INFO: Added broadcast_37_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 3.1 KB, free: 21.7 GB) 2021-04-12 16:04:48 SparkContext: INFO: Created broadcast 37 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:52 root: INFO: encoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 MemoryStore: INFO: Block broadcast_38 stored as values in memory (estimated size 7.7 KB, free 21.7 GB) 2021-04-12 16:04:52 MemoryStore: INFO: Block broadcast_38_piece0 stored as bytes in memory (estimated size 2.9 KB, free 21.7 GB) 2021-04-12 16:04:52 BlockManagerInfo: INFO: Added broadcast_38_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 2.9 KB, free: 21.7 GB) 2021-04-12 16:04:52 SparkContext: INFO: Created broadcast 38 from broadcast at SparkBackend.scala:259 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:52 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:53 root: INFO: decoder cache hit 2021-04-12 16:04:57 root: INFO: encoder cache hit 2021-04-12 16:04:57 root: INFO: decoder cache hit 2021-04-12 16:04:57 MemoryStore: INFO: Block broadcast_39 stored as values in memory (estimated size 10.3 KB, free 21.7 GB) 2021-04-12 16:04:57 MemoryStore: INFO: Block broadcast_39_piece0 stored as bytes in memory (estimated size 3.1 KB, free 21.7 GB) 2021-04-12 16:04:57 BlockManagerInfo: INFO: Added broadcast_39_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 3.1 KB, free: 21.7 GB) 2021-04-12 16:04:57 SparkContext: INFO: Created broadcast 39 from broadcast at SparkBackend.scala:259 2021-04-12 16:05:01 root: INFO: encoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 MemoryStore: INFO: Block broadcast_40 stored as values in memory (estimated size 7.7 KB, free 21.7 GB) 2021-04-12 16:05:01 MemoryStore: INFO: Block broadcast_40_piece0 stored as bytes in memory (estimated size 2.9 KB, free 21.7 GB) 2021-04-12 16:05:01 BlockManagerInfo: INFO: Added broadcast_40_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 2.9 KB, free: 21.7 GB) 2021-04-12 16:05:01 SparkContext: INFO: Created broadcast 40 from broadcast at SparkBackend.scala:259 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:01 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:02 root: INFO: decoder cache hit 2021-04-12 16:05:04 root: INFO: encoder cache hit 2021-04-12 16:05:04 root: INFO: decoder cache hit 2021-04-12 16:05:04 MemoryStore: INFO: Block broadcast_41 stored as values in memory (estimated size 10.0 KB, free 21.7 GB) 2021-04-12 16:05:04 MemoryStore: INFO: Block broadcast_41_piece0 stored as bytes in memory (estimated size 2.9 KB, free 21.7 GB) 2021-04-12 16:05:04 BlockManagerInfo: INFO: Added broadcast_41_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 2.9 KB, free: 21.7 GB) 2021-04-12 16:05:04 SparkContext: INFO: Created broadcast 41 from broadcast at SparkBackend.scala:259 2021-04-12 16:05:05 root: INFO: encoder cache hit 2021-04-12 16:05:05 root: INFO: decoder cache hit 2021-04-12 16:05:05 MemoryStore: INFO: Block broadcast_42 stored as values in memory (estimated size 7.5 KB, free 21.7 GB) 2021-04-12 16:05:05 MemoryStore: INFO: Block broadcast_42_piece0 stored as bytes in memory (estimated size 2.7 KB, free 21.7 GB) 2021-04-12 16:05:05 BlockManagerInfo: INFO: Added broadcast_42_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 2.7 KB, free: 21.7 GB) 2021-04-12 16:05:05 SparkContext: INFO: Created broadcast 42 from broadcast at SparkBackend.scala:259 2021-04-12 16:05:12 MemoryStore: INFO: Block broadcast_43 stored as values in memory (estimated size 3.3 MB, free 21.7 GB) 2021-04-12 16:05:12 MemoryStore: INFO: Block broadcast_43_piece0 stored as bytes in memory (estimated size 72.0 KB, free 21.7 GB) 2021-04-12 16:05:12 BlockManagerInfo: INFO: Added broadcast_43_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 72.0 KB, free: 21.7 GB) 2021-04-12 16:05:12 SparkContext: INFO: Created broadcast 43 from broadcast at RVDPartitioner.scala:93 2021-04-12 16:05:12 root: INFO: encoder cache miss (882 hits, 8 misses, 0.991) 2021-04-12 16:05:12 root: INFO: instruction count: 3: __C782etypeEncode. 2021-04-12 16:05:12 root: INFO: instruction count: 5: __C782etypeEncode.apply 2021-04-12 16:05:12 root: INFO: instruction count: 69: __C782etypeEncode.__m783ENCODE_r_tuple_of_r_locusANDo_array_of_o_stringANDo_stringANDr_array_of_o_tuple_of_r_array_of_o_int32ANDo_callANDo_array_of_o_int32ANDo_callANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_tuple_of_o_float64ANDo_float64ANDr_boolANDo_float64ANDo_float64ANDo_float64ANDo_array_of_o_int32ANDo_array_of_o_float64ANDo_float64ANDo_int32ANDo_float64ANDo_float64ANDo_float64ANDo_stringENDANDo_float64ANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_stringANDo_array_of_o_int32ENDEND_TO_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryANDo_binaryEND 2021-04-12 16:05:12 root: INFO: instruction count: 39: __C782etypeEncode.__m784ENCODE_r_locus_TO_r_struct_of_r_binaryANDr_int32END 2021-04-12 16:05:12 root: INFO: instruction count: 18: __C782etypeEncode.__m785ENCODE_r_string_TO_r_binary 2021-04-12 16:05:12 root: INFO: instruction count: 6: __C782etypeEncode.__m786ENCODE_r_int32_TO_r_int32 2021-04-12 16:05:12 root: INFO: instruction count: 125: __C782etypeEncode.__m787ENCODE_o_array_of_o_string_TO_o_array_of_o_binary 2021-04-12 16:05:12 root: INFO: instruction count: 18: __C782etypeEncode.__m788ENCODE_o_string_TO_o_binary 2021-04-12 16:05:12 root: INFO: encoder cache miss (882 hits, 9 misses, 0.990) 2021-04-12 16:05:12 root: INFO: instruction count: 3: __C789etypeEncode. 2021-04-12 16:05:12 root: INFO: instruction count: 5: __C789etypeEncode.apply 2021-04-12 16:05:12 root: INFO: instruction count: 13: __C789etypeEncode.__m790ENCODE_r_tuple_of_r_locusANDo_array_of_o_stringANDo_stringANDr_array_of_o_tuple_of_r_array_of_o_int32ANDo_callANDo_array_of_o_int32ANDo_callANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_tuple_of_o_float64ANDo_float64ANDr_boolANDo_float64ANDo_float64ANDo_float64ANDo_array_of_o_int32ANDo_array_of_o_float64ANDo_float64ANDo_int32ANDo_float64ANDo_float64ANDo_float64ANDo_stringENDANDo_float64ANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_stringANDo_array_of_o_int32ENDEND_TO_r_struct_of_r_array_of_o_struct_of_r_array_of_o_int32ANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_struct_of_o_float64ANDo_float64ANDr_boolANDo_float64ANDo_float64ANDo_float64ANDo_array_of_o_int32ANDo_array_of_o_float64ANDo_float64ANDo_int32ANDo_float64ANDo_float64ANDo_float64ANDo_binaryENDANDo_float64ANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_int32ENDEND 2021-04-12 16:05:12 root: INFO: instruction count: 121: __C789etypeEncode.__m791ENCODE_r_array_of_o_tuple_of_r_array_of_o_int32ANDo_callANDo_array_of_o_int32ANDo_callANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_tuple_of_o_float64ANDo_float64ANDr_boolANDo_float64ANDo_float64ANDo_float64ANDo_array_of_o_int32ANDo_array_of_o_float64ANDo_float64ANDo_int32ANDo_float64ANDo_float64ANDo_float64ANDo_stringENDANDo_float64ANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_stringANDo_array_of_o_int32END_TO_r_array_of_o_struct_of_r_array_of_o_int32ANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_struct_of_o_float64ANDo_float64ANDr_boolANDo_float64ANDo_float64ANDo_float64ANDo_array_of_o_int32ANDo_array_of_o_float64ANDo_float64ANDo_int32ANDo_float64ANDo_float64ANDo_float64ANDo_binaryENDANDo_float64ANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_int32END 2021-04-12 16:05:12 root: INFO: instruction count: 291: __C789etypeEncode.__m792ENCODE_o_tuple_of_r_array_of_o_int32ANDo_callANDo_array_of_o_int32ANDo_callANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_tuple_of_o_float64ANDo_float64ANDr_boolANDo_float64ANDo_float64ANDo_float64ANDo_array_of_o_int32ANDo_array_of_o_float64ANDo_float64ANDo_int32ANDo_float64ANDo_float64ANDo_float64ANDo_stringENDANDo_float64ANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_stringANDo_array_of_o_int32END_TO_o_struct_of_r_array_of_o_int32ANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_struct_of_o_float64ANDo_float64ANDr_boolANDo_float64ANDo_float64ANDo_float64ANDo_array_of_o_int32ANDo_array_of_o_float64ANDo_float64ANDo_int32ANDo_float64ANDo_float64ANDo_float64ANDo_binaryENDANDo_float64ANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_int32END 2021-04-12 16:05:12 root: INFO: instruction count: 125: __C789etypeEncode.__m793ENCODE_r_array_of_o_int32_TO_r_array_of_o_int32 2021-04-12 16:05:12 root: INFO: instruction count: 6: __C789etypeEncode.__m794ENCODE_o_int32_TO_o_int32 2021-04-12 16:05:12 root: INFO: instruction count: 6: __C789etypeEncode.__m795ENCODE_o_call_TO_o_int32 2021-04-12 16:05:12 root: INFO: instruction count: 125: __C789etypeEncode.__m796ENCODE_o_array_of_o_int32_TO_o_array_of_o_int32 2021-04-12 16:05:12 root: INFO: instruction count: 276: __C789etypeEncode.__m797ENCODE_o_tuple_of_o_float64ANDo_float64ANDr_boolANDo_float64ANDo_float64ANDo_float64ANDo_array_of_o_int32ANDo_array_of_o_float64ANDo_float64ANDo_int32ANDo_float64ANDo_float64ANDo_float64ANDo_stringEND_TO_o_struct_of_o_float64ANDo_float64ANDr_boolANDo_float64ANDo_float64ANDo_float64ANDo_array_of_o_int32ANDo_array_of_o_float64ANDo_float64ANDo_int32ANDo_float64ANDo_float64ANDo_float64ANDo_binaryEND 2021-04-12 16:05:12 root: INFO: instruction count: 6: __C789etypeEncode.__m798ENCODE_o_float64_TO_o_float64 2021-04-12 16:05:12 root: INFO: instruction count: 6: __C789etypeEncode.__m799ENCODE_r_bool_TO_r_bool 2021-04-12 16:05:12 root: INFO: instruction count: 125: __C789etypeEncode.__m800ENCODE_o_array_of_o_float64_TO_o_array_of_o_float64 2021-04-12 16:05:12 root: INFO: instruction count: 18: __C789etypeEncode.__m801ENCODE_o_string_TO_o_binary 2021-04-12 16:05:12 root: INFO: instruction count: 3: __C802indexwriter. 2021-04-12 16:05:12 root: INFO: instruction count: 130: __C802indexwriter.apply 2021-04-12 16:05:12 root: INFO: instruction count: 344: __C802indexwriter.__m811writeInternalNode 2021-04-12 16:05:12 root: INFO: instruction count: 13: __C802indexwriter.__m812ENCODE_o_tuple_of_r_array_of_r_tuple_of_r_int64ANDr_int64ANDr_tuple_of_r_locusENDANDr_int64ANDr_tuple_of_o_int64ENDENDEND_TO_o_struct_of_r_array_of_r_struct_of_r_int64ANDr_int64ANDr_struct_of_r_struct_of_r_binaryANDr_int32ENDENDANDr_int64ANDr_struct_of_o_int64ENDENDEND 2021-04-12 16:05:12 root: INFO: instruction count: 45: __C802indexwriter.__m813ENCODE_r_array_of_r_tuple_of_r_int64ANDr_int64ANDr_tuple_of_r_locusENDANDr_int64ANDr_tuple_of_o_int64ENDEND_TO_r_array_of_r_struct_of_r_int64ANDr_int64ANDr_struct_of_r_struct_of_r_binaryANDr_int32ENDENDANDr_int64ANDr_struct_of_o_int64ENDEND 2021-04-12 16:05:12 root: INFO: instruction count: 45: __C802indexwriter.__m814ENCODE_r_tuple_of_r_int64ANDr_int64ANDr_tuple_of_r_locusENDANDr_int64ANDr_tuple_of_o_int64ENDEND_TO_r_struct_of_r_int64ANDr_int64ANDr_struct_of_r_struct_of_r_binaryANDr_int32ENDENDANDr_int64ANDr_struct_of_o_int64ENDEND 2021-04-12 16:05:12 root: INFO: instruction count: 6: __C802indexwriter.__m815ENCODE_r_int64_TO_r_int64 2021-04-12 16:05:12 root: INFO: instruction count: 9: __C802indexwriter.__m816ENCODE_r_tuple_of_r_locusEND_TO_r_struct_of_r_struct_of_r_binaryANDr_int32ENDEND 2021-04-12 16:05:12 root: INFO: instruction count: 39: __C802indexwriter.__m817ENCODE_r_locus_TO_r_struct_of_r_binaryANDr_int32END 2021-04-12 16:05:12 root: INFO: instruction count: 18: __C802indexwriter.__m818ENCODE_r_string_TO_r_binary 2021-04-12 16:05:12 root: INFO: instruction count: 6: __C802indexwriter.__m819ENCODE_r_int32_TO_r_int32 2021-04-12 16:05:12 root: INFO: instruction count: 34: __C802indexwriter.__m820ENCODE_r_tuple_of_o_int64END_TO_r_struct_of_o_int64END 2021-04-12 16:05:12 root: INFO: instruction count: 6: __C802indexwriter.__m821ENCODE_o_int64_TO_o_int64 2021-04-12 16:05:12 root: INFO: instruction count: 277: __C802indexwriter.__m823writeLeafNode 2021-04-12 16:05:12 root: INFO: instruction count: 23: __C802indexwriter.__m824ENCODE_o_tuple_of_r_int64ANDr_array_of_r_tuple_of_r_tuple_of_r_locusENDANDr_int64ANDr_tuple_of_o_int64ENDENDEND_TO_o_struct_of_r_int64ANDr_array_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDENDANDr_int64ANDr_struct_of_o_int64ENDENDEND 2021-04-12 16:05:12 root: INFO: instruction count: 45: __C802indexwriter.__m825ENCODE_r_array_of_r_tuple_of_r_tuple_of_r_locusENDANDr_int64ANDr_tuple_of_o_int64ENDEND_TO_r_array_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDENDANDr_int64ANDr_struct_of_o_int64ENDEND 2021-04-12 16:05:12 root: INFO: instruction count: 25: __C802indexwriter.__m826ENCODE_r_tuple_of_r_tuple_of_r_locusENDANDr_int64ANDr_tuple_of_o_int64ENDEND_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDENDANDr_int64ANDr_struct_of_o_int64ENDEND 2021-04-12 16:05:12 root: INFO: instruction count: 52: __C802indexwriter.__m827flush 2021-04-12 16:05:12 root: INFO: instruction count: 152: __C802indexwriter.init 2021-04-12 16:05:12 root: INFO: instruction count: 4: __C802indexwriter.setObjects 2021-04-12 16:05:12 root: INFO: instruction count: 28: __C802indexwriter.close 2021-04-12 16:05:12 root: INFO: instruction count: 7: __C802indexwriter.trackedOS 2021-04-12 16:05:12 root: INFO: instruction count: 9: __C802indexwriter.setPartitionIndex 2021-04-12 16:05:12 root: INFO: instruction count: 4: __C802indexwriter.addPartitionRegion 2021-04-12 16:05:12 root: INFO: instruction count: 4: __C802indexwriter.setPool 2021-04-12 16:05:12 root: INFO: instruction count: 3: __C829FSContainer. 2021-04-12 16:05:12 root: INFO: instruction count: 28: __C829FSContainer.init_filesystem 2021-04-12 16:05:12 root: INFO: instruction count: 3: __C829FSContainer. 2021-04-12 16:05:24 SparkContext: INFO: Starting job: collect at ContextRDD.scala:176 2021-04-12 16:05:24 DAGScheduler: INFO: Got job 9 (collect at ContextRDD.scala:176) with 23274 output partitions 2021-04-12 16:05:24 DAGScheduler: INFO: Final stage: ResultStage 9 (collect at ContextRDD.scala:176) 2021-04-12 16:05:24 DAGScheduler: INFO: Parents of final stage: List() 2021-04-12 16:05:24 DAGScheduler: INFO: Missing parents: List() 2021-04-12 16:05:24 DAGScheduler: INFO: Submitting ResultStage 9 (MapPartitionsRDD[6118] at mapPartitions at ContextRDD.scala:168), which has no missing parents 2021-04-12 16:05:36 MemoryStore: INFO: Block broadcast_44 stored as values in memory (estimated size 1511.6 KB, free 21.7 GB) 2021-04-12 16:05:36 MemoryStore: INFO: Block broadcast_44_piece0 stored as bytes in memory (estimated size 457.9 KB, free 21.7 GB) 2021-04-12 16:05:36 BlockManagerInfo: INFO: Added broadcast_44_piece0 in memory on berylc-m.us-central1-b.c.human-genetics-001.internal:37993 (size: 457.9 KB, free: 21.7 GB) 2021-04-12 16:05:36 SparkContext: INFO: Created broadcast 44 from broadcast at DAGScheduler.scala:1163 2021-04-12 16:05:36 DAGScheduler: INFO: Submitting 23274 missing tasks from ResultStage 9 (MapPartitionsRDD[6118] at mapPartitions at ContextRDD.scala:168) (first 15 tasks are for partitions Vector(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)) 2021-04-12 16:05:36 YarnScheduler: INFO: Adding task set 9.0 with 23274 tasks 2021-04-12 16:05:36 FairSchedulableBuilder: INFO: Added task set TaskSet_9.0 tasks to pool default 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 0.0 in stage 9.0 (TID 871, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 0, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 1.0 in stage 9.0 (TID 872, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 1, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 2.0 in stage 9.0 (TID 873, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 3.0 in stage 9.0 (TID 874, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 BlockManagerInfo: INFO: Added broadcast_44_piece0 in memory on berylc-w-1.us-central1-b.c.human-genetics-001.internal:42595 (size: 457.9 KB, free: 5.6 GB) 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 4.0 in stage 9.0 (TID 875, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 4, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 5.0 in stage 9.0 (TID 876, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 6.0 in stage 9.0 (TID 877, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 7.0 in stage 9.0 (TID 878, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: WARN: Lost task 0.0 in stage 9.0 (TID 871, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1): java.lang.ArrayIndexOutOfBoundsException: 3366 at is.hail.io.tabix.TabixReader$$anonfun$1.apply(TabixReader.scala:116) at is.hail.io.tabix.TabixReader$$anonfun$1.apply(TabixReader.scala:86) at is.hail.utils.package$.using(package.scala:618) at is.hail.io.tabix.TabixReader.(TabixReader.scala:86) at is.hail.io.vcf.PartitionedVCFRDD.compute(LoadVCF.scala:1486) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at is.hail.sparkextras.MultiWayZipPartitionsRDD$$anonfun$2.apply(MultiWayZipPartitionsRDD.scala:38) at is.hail.sparkextras.MultiWayZipPartitionsRDD$$anonfun$2.apply(MultiWayZipPartitionsRDD.scala:38) at scala.Array$.tabulate(Array.scala:331) at is.hail.sparkextras.MultiWayZipPartitionsRDD.compute(MultiWayZipPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at is.hail.sparkextras.OriginUnionRDD.compute(OriginUnionRDD.scala:42) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:346) at org.apache.spark.rdd.RDD.iterator(RDD.scala:310) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2021-04-12 16:05:36 TaskSetManager: INFO: Lost task 1.0 in stage 9.0 (TID 872) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (3366) [duplicate 1] 2021-04-12 16:05:36 TaskSetManager: INFO: Lost task 3.0 in stage 9.0 (TID 874) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (3366) [duplicate 2] 2021-04-12 16:05:36 TaskSetManager: INFO: Lost task 2.0 in stage 9.0 (TID 873) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (3366) [duplicate 3] 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 2.1 in stage 9.0 (TID 879, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Lost task 7.0 in stage 9.0 (TID 878) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (3366) [duplicate 4] 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 7.1 in stage 9.0 (TID 880, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 3.1 in stage 9.0 (TID 881, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Lost task 4.0 in stage 9.0 (TID 875) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (3366) [duplicate 5] 2021-04-12 16:05:36 TaskSetManager: INFO: Lost task 5.0 in stage 9.0 (TID 876) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (3366) [duplicate 6] 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 5.1 in stage 9.0 (TID 882, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Lost task 6.0 in stage 9.0 (TID 877) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (3366) [duplicate 7] 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 6.1 in stage 9.0 (TID 883, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Lost task 2.1 in stage 9.0 (TID 879) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (3366) [duplicate 8] 2021-04-12 16:05:36 TaskSetManager: INFO: Starting task 2.2 in stage 9.0 (TID 884, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:36 TaskSetManager: INFO: Lost task 5.1 in stage 9.0 (TID 882) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (3366) [duplicate 9] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 5.2 in stage 9.0 (TID 885, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 3.1 in stage 9.0 (TID 881) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (3366) [duplicate 10] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 3.2 in stage 9.0 (TID 886, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 7.1 in stage 9.0 (TID 880) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (3366) [duplicate 11] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 7.2 in stage 9.0 (TID 887, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: WARN: Lost task 6.1 in stage 9.0 (TID 883, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1): java.lang.ArrayIndexOutOfBoundsException 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 6.2 in stage 9.0 (TID 888, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 2.2 in stage 9.0 (TID 884) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 1] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 2.3 in stage 9.0 (TID 889, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 5.2 in stage 9.0 (TID 885) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 2] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 5.3 in stage 9.0 (TID 890, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 3.2 in stage 9.0 (TID 886) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 3] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 3.3 in stage 9.0 (TID 891, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 2.3 in stage 9.0 (TID 889) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 4] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 2.4 in stage 9.0 (TID 892, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 6.2 in stage 9.0 (TID 888) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 5] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 6.3 in stage 9.0 (TID 893, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 7.2 in stage 9.0 (TID 887) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 6] 2021-04-12 16:05:37 ExecutorAllocationManager: INFO: Requesting 1 new executor because tasks are backlogged (new desired total will be 2) 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 7.3 in stage 9.0 (TID 894, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 5.3 in stage 9.0 (TID 890) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 7] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 5.4 in stage 9.0 (TID 895, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 3.3 in stage 9.0 (TID 891) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 8] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 3.4 in stage 9.0 (TID 896, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 2.4 in stage 9.0 (TID 892) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 9] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 2.5 in stage 9.0 (TID 897, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 6.3 in stage 9.0 (TID 893) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 10] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 6.4 in stage 9.0 (TID 898, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 3.4 in stage 9.0 (TID 896) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 11] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 3.5 in stage 9.0 (TID 899, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 7.3 in stage 9.0 (TID 894) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 12] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 7.4 in stage 9.0 (TID 900, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 5.4 in stage 9.0 (TID 895) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 13] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 5.5 in stage 9.0 (TID 901, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 2.5 in stage 9.0 (TID 897) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 14] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 2.6 in stage 9.0 (TID 902, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 7.4 in stage 9.0 (TID 900) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 15] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 7.5 in stage 9.0 (TID 903, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 3.5 in stage 9.0 (TID 899) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 16] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 3.6 in stage 9.0 (TID 904, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 5.5 in stage 9.0 (TID 901) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 17] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 5.6 in stage 9.0 (TID 905, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 6.4 in stage 9.0 (TID 898) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 18] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 6.5 in stage 9.0 (TID 906, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 2.6 in stage 9.0 (TID 902) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 19] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 2.7 in stage 9.0 (TID 907, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 3.6 in stage 9.0 (TID 904) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 20] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 3.7 in stage 9.0 (TID 908, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 7.5 in stage 9.0 (TID 903) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 21] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 7.6 in stage 9.0 (TID 909, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 5.6 in stage 9.0 (TID 905) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 22] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 5.7 in stage 9.0 (TID 910, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 6.5 in stage 9.0 (TID 906) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 23] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 6.6 in stage 9.0 (TID 911, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 2.7 in stage 9.0 (TID 907) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 24] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 2.8 in stage 9.0 (TID 912, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 3.7 in stage 9.0 (TID 908) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 25] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 3.8 in stage 9.0 (TID 913, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 5.7 in stage 9.0 (TID 910) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 26] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 5.8 in stage 9.0 (TID 914, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 6.6 in stage 9.0 (TID 911) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 27] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 6.7 in stage 9.0 (TID 915, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 7.6 in stage 9.0 (TID 909) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 28] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 7.7 in stage 9.0 (TID 916, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 2.8 in stage 9.0 (TID 912) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 29] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 2.9 in stage 9.0 (TID 917, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 3.8 in stage 9.0 (TID 913) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 30] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 3.9 in stage 9.0 (TID 918, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 7.7 in stage 9.0 (TID 916) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 31] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 7.8 in stage 9.0 (TID 919, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 6.7 in stage 9.0 (TID 915) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 32] 2021-04-12 16:05:37 TaskSetManager: INFO: Starting task 6.8 in stage 9.0 (TID 920, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:37 TaskSetManager: INFO: Lost task 5.8 in stage 9.0 (TID 914) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 33] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 5.9 in stage 9.0 (TID 921, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 2.9 in stage 9.0 (TID 917) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 34] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 2.10 in stage 9.0 (TID 922, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 3.9 in stage 9.0 (TID 918) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 35] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 3.10 in stage 9.0 (TID 923, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 7.8 in stage 9.0 (TID 919) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 36] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 7.9 in stage 9.0 (TID 924, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 5.9 in stage 9.0 (TID 921) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 37] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 5.10 in stage 9.0 (TID 925, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 6.8 in stage 9.0 (TID 920) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 38] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 6.9 in stage 9.0 (TID 926, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 2.10 in stage 9.0 (TID 922) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 39] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 2.11 in stage 9.0 (TID 927, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 3.10 in stage 9.0 (TID 923) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 40] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 3.11 in stage 9.0 (TID 928, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 5.10 in stage 9.0 (TID 925) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 41] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 5.11 in stage 9.0 (TID 929, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 7.9 in stage 9.0 (TID 924) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 42] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 7.10 in stage 9.0 (TID 930, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 6.9 in stage 9.0 (TID 926) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 43] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 6.10 in stage 9.0 (TID 931, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 2.11 in stage 9.0 (TID 927) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 44] 2021-04-12 16:05:38 ExecutorAllocationManager: INFO: Requesting 2 new executors because tasks are backlogged (new desired total will be 4) 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 2.12 in stage 9.0 (TID 932, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 3.11 in stage 9.0 (TID 928) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 45] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 3.12 in stage 9.0 (TID 933, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 5.11 in stage 9.0 (TID 929) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 46] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 5.12 in stage 9.0 (TID 934, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 7.10 in stage 9.0 (TID 930) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 47] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 7.11 in stage 9.0 (TID 935, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 6.10 in stage 9.0 (TID 931) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 48] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 6.11 in stage 9.0 (TID 936, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 2.12 in stage 9.0 (TID 932) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 49] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 2.13 in stage 9.0 (TID 937, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 3.12 in stage 9.0 (TID 933) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 50] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 3.13 in stage 9.0 (TID 938, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 5.12 in stage 9.0 (TID 934) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 51] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 5.13 in stage 9.0 (TID 939, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 7.11 in stage 9.0 (TID 935) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 52] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 7.12 in stage 9.0 (TID 940, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 6.11 in stage 9.0 (TID 936) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 53] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 6.12 in stage 9.0 (TID 941, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 2.13 in stage 9.0 (TID 937) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 54] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 2.14 in stage 9.0 (TID 942, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 5.13 in stage 9.0 (TID 939) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 55] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 5.14 in stage 9.0 (TID 943, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 3.13 in stage 9.0 (TID 938) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 56] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 3.14 in stage 9.0 (TID 944, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 7.12 in stage 9.0 (TID 940) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 57] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 7.13 in stage 9.0 (TID 945, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 6.12 in stage 9.0 (TID 941) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 58] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 6.13 in stage 9.0 (TID 946, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 5.14 in stage 9.0 (TID 943) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 59] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 5.15 in stage 9.0 (TID 947, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 2.14 in stage 9.0 (TID 942) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 60] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 2.15 in stage 9.0 (TID 948, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 5.15 in stage 9.0 (TID 947) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 61] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 5.16 in stage 9.0 (TID 949, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 3.14 in stage 9.0 (TID 944) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 62] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 3.15 in stage 9.0 (TID 950, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 7.13 in stage 9.0 (TID 945) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 63] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 7.14 in stage 9.0 (TID 951, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 6.13 in stage 9.0 (TID 946) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 64] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 6.14 in stage 9.0 (TID 952, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 2.15 in stage 9.0 (TID 948) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 65] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 2.16 in stage 9.0 (TID 953, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 5.16 in stage 9.0 (TID 949) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 66] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 5.17 in stage 9.0 (TID 954, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 7.14 in stage 9.0 (TID 951) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 67] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 7.15 in stage 9.0 (TID 955, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 3.15 in stage 9.0 (TID 950) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 68] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 3.16 in stage 9.0 (TID 956, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 2.16 in stage 9.0 (TID 953) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 69] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 2.17 in stage 9.0 (TID 957, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 6.14 in stage 9.0 (TID 952) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 70] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 6.15 in stage 9.0 (TID 958, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 3.16 in stage 9.0 (TID 956) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 71] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 3.17 in stage 9.0 (TID 959, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 7.15 in stage 9.0 (TID 955) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 72] 2021-04-12 16:05:38 TaskSetManager: INFO: Starting task 7.16 in stage 9.0 (TID 960, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:38 TaskSetManager: INFO: Lost task 2.17 in stage 9.0 (TID 957) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 73] 2021-04-12 16:05:39 TaskSetManager: INFO: Starting task 2.18 in stage 9.0 (TID 961, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:39 TaskSetManager: INFO: Lost task 5.17 in stage 9.0 (TID 954) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 74] 2021-04-12 16:05:39 TaskSetManager: INFO: Starting task 5.18 in stage 9.0 (TID 962, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:39 TaskSetManager: INFO: Lost task 6.15 in stage 9.0 (TID 958) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 75] 2021-04-12 16:05:39 TaskSetManager: INFO: Starting task 6.16 in stage 9.0 (TID 963, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:39 TaskSetManager: INFO: Lost task 3.17 in stage 9.0 (TID 959) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 76] 2021-04-12 16:05:39 TaskSetManager: INFO: Starting task 3.18 in stage 9.0 (TID 964, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:39 TaskSetManager: INFO: Lost task 7.16 in stage 9.0 (TID 960) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 77] 2021-04-12 16:05:39 TaskSetManager: INFO: Starting task 7.17 in stage 9.0 (TID 965, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:39 TaskSetManager: INFO: Lost task 2.18 in stage 9.0 (TID 961) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 78] 2021-04-12 16:05:39 TaskSetManager: INFO: Starting task 2.19 in stage 9.0 (TID 966, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 2, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:39 TaskSetManager: INFO: Lost task 5.18 in stage 9.0 (TID 962) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 79] 2021-04-12 16:05:39 TaskSetManager: INFO: Starting task 5.19 in stage 9.0 (TID 967, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 5, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:39 TaskSetManager: INFO: Lost task 3.18 in stage 9.0 (TID 964) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 80] 2021-04-12 16:05:39 TaskSetManager: INFO: Starting task 3.19 in stage 9.0 (TID 968, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 3, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:39 TaskSetManager: INFO: Lost task 7.17 in stage 9.0 (TID 965) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 81] 2021-04-12 16:05:39 TaskSetManager: INFO: Starting task 7.18 in stage 9.0 (TID 969, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 7, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:39 TaskSetManager: INFO: Lost task 6.16 in stage 9.0 (TID 963) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 82] 2021-04-12 16:05:39 TaskSetManager: INFO: Starting task 6.17 in stage 9.0 (TID 970, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1, partition 6, PROCESS_LOCAL, 8567 bytes) 2021-04-12 16:05:39 TaskSetManager: INFO: Lost task 5.19 in stage 9.0 (TID 967) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 83] 2021-04-12 16:05:39 TaskSetManager: ERROR: Task 5 in stage 9.0 failed 20 times; aborting job 2021-04-12 16:05:39 TaskSetManager: INFO: Lost task 2.19 in stage 9.0 (TID 966) on berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1: java.lang.ArrayIndexOutOfBoundsException (null) [duplicate 84] 2021-04-12 16:05:39 YarnScheduler: INFO: Cancelling stage 9 2021-04-12 16:05:39 YarnScheduler: INFO: Killing all running tasks in stage 9: Stage cancelled 2021-04-12 16:05:39 YarnScheduler: INFO: Stage 9 was cancelled 2021-04-12 16:05:39 DAGScheduler: INFO: ResultStage 9 (collect at ContextRDD.scala:176) failed in 3.096 s due to Job aborted due to stage failure: Task 5 in stage 9.0 failed 20 times, most recent failure: Lost task 5.19 in stage 9.0 (TID 967, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1): java.lang.ArrayIndexOutOfBoundsException Driver stacktrace: 2021-04-12 16:05:39 DAGScheduler: INFO: Job 9 failed: collect at ContextRDD.scala:176, took 14.827920 s 2021-04-12 16:05:39 root: ERROR: error while applying lowering 'InterpretNonCompilable' 2021-04-12 16:05:39 root: INFO: RegionPool: FREE: 192.0K allocated (192.0K blocks / 0 chunks), regions.size = 3, 0 current java objects, 0 max java objects, thread 19: Thread-6 2021-04-12 16:05:39 root: ERROR: ArrayIndexOutOfBoundsException: null From org.apache.spark.SparkException: Job aborted due to stage failure: Task 5 in stage 9.0 failed 20 times, most recent failure: Lost task 5.19 in stage 9.0 (TID 967, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1): java.lang.ArrayIndexOutOfBoundsException Driver stacktrace: at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1892) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1880) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1879) at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48) at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1879) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:927) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:927) at scala.Option.foreach(Option.scala:257) at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:927) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2113) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2062) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2051) at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49) at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:738) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2082) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2101) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2126) at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:990) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112) at org.apache.spark.rdd.RDD.withScope(RDD.scala:385) at org.apache.spark.rdd.RDD.collect(RDD.scala:989) at is.hail.sparkextras.ContextRDD.collect(ContextRDD.scala:176) at is.hail.rvd.RVD$$anonfun$47.apply(RVD.scala:1515) at is.hail.rvd.RVD$$anonfun$47.apply(RVD.scala:1515) at is.hail.utils.ExecutionTimer.time(ExecutionTimer.scala:81) at is.hail.rvd.RVD$.writeRowsSplitFiles(RVD.scala:1513) at is.hail.expr.ir.MatrixValue$.writeMultiple(MatrixValue.scala:339) at is.hail.expr.ir.MatrixNativeMultiWriter.apply(MatrixWriter.scala:352) at is.hail.expr.ir.WrappedMatrixNativeMultiWriter.apply(TableWriter.scala:360) at is.hail.expr.ir.Interpret$.run(Interpret.scala:817) at is.hail.expr.ir.Interpret$.alreadyLowered(Interpret.scala:53) at is.hail.expr.ir.InterpretNonCompilable$.interpretAndCoerce$1(InterpretNonCompilable.scala:16) at is.hail.expr.ir.InterpretNonCompilable$.is$hail$expr$ir$InterpretNonCompilable$$rewrite$1(InterpretNonCompilable.scala:53) at is.hail.expr.ir.InterpretNonCompilable$.apply(InterpretNonCompilable.scala:58) at is.hail.expr.ir.lowering.InterpretNonCompilablePass$.transform(LoweringPass.scala:67) at is.hail.expr.ir.lowering.LoweringPass$$anonfun$apply$3$$anonfun$1.apply(LoweringPass.scala:15) at is.hail.expr.ir.lowering.LoweringPass$$anonfun$apply$3$$anonfun$1.apply(LoweringPass.scala:15) at is.hail.utils.ExecutionTimer.time(ExecutionTimer.scala:81) at is.hail.expr.ir.lowering.LoweringPass$$anonfun$apply$3.apply(LoweringPass.scala:15) at is.hail.expr.ir.lowering.LoweringPass$$anonfun$apply$3.apply(LoweringPass.scala:13) at is.hail.utils.ExecutionTimer.time(ExecutionTimer.scala:81) at is.hail.expr.ir.lowering.LoweringPass$class.apply(LoweringPass.scala:13) at is.hail.expr.ir.lowering.InterpretNonCompilablePass$.apply(LoweringPass.scala:62) at is.hail.expr.ir.lowering.LoweringPipeline$$anonfun$apply$1.apply(LoweringPipeline.scala:14) at is.hail.expr.ir.lowering.LoweringPipeline$$anonfun$apply$1.apply(LoweringPipeline.scala:12) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:35) at is.hail.expr.ir.lowering.LoweringPipeline.apply(LoweringPipeline.scala:12) at is.hail.expr.ir.CompileAndEvaluate$._apply(CompileAndEvaluate.scala:28) at is.hail.backend.spark.SparkBackend.is$hail$backend$spark$SparkBackend$$_execute(SparkBackend.scala:362) at is.hail.backend.spark.SparkBackend$$anonfun$execute$1.apply(SparkBackend.scala:346) at is.hail.backend.spark.SparkBackend$$anonfun$execute$1.apply(SparkBackend.scala:343) at is.hail.expr.ir.ExecuteContext$$anonfun$scoped$1$$anonfun$apply$1.apply(ExecuteContext.scala:48) at is.hail.expr.ir.ExecuteContext$$anonfun$scoped$1$$anonfun$apply$1.apply(ExecuteContext.scala:48) at is.hail.utils.package$.using(package.scala:618) at is.hail.expr.ir.ExecuteContext$$anonfun$scoped$1.apply(ExecuteContext.scala:48) at is.hail.expr.ir.ExecuteContext$$anonfun$scoped$1.apply(ExecuteContext.scala:47) at is.hail.utils.package$.using(package.scala:618) at is.hail.annotations.RegionPool$.scoped(RegionPool.scala:13) at is.hail.expr.ir.ExecuteContext$.scoped(ExecuteContext.scala:47) at is.hail.backend.spark.SparkBackend.withExecuteContext(SparkBackend.scala:256) at is.hail.backend.spark.SparkBackend.execute(SparkBackend.scala:343) at is.hail.backend.spark.SparkBackend$$anonfun$7.apply(SparkBackend.scala:387) at is.hail.backend.spark.SparkBackend$$anonfun$7.apply(SparkBackend.scala:385) at is.hail.utils.ExecutionTimer$.time(ExecutionTimer.scala:52) at is.hail.backend.spark.SparkBackend.executeJSON(SparkBackend.scala:385) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244) at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357) at py4j.Gateway.invoke(Gateway.java:282) at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132) at py4j.commands.CallCommand.execute(CallCommand.java:79) at py4j.GatewayConnection.run(GatewayConnection.java:238) at java.lang.Thread.run(Thread.java:748) java.lang.ArrayIndexOutOfBoundsException: null at 2021-04-12 16:05:39 TaskSetManager: WARN: Lost task 3.19 in stage 9.0 (TID 968, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1): TaskKilled (Stage cancelled) 2021-04-12 16:05:39 TaskSetManager: WARN: Lost task 7.18 in stage 9.0 (TID 969, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1): TaskKilled (Stage cancelled) 2021-04-12 16:05:39 TaskSetManager: WARN: Lost task 6.17 in stage 9.0 (TID 970, berylc-w-1.us-central1-b.c.human-genetics-001.internal, executor 1): TaskKilled (Stage cancelled) 2021-04-12 16:05:39 YarnScheduler: INFO: Removed TaskSet 9.0, whose tasks have all completed, from pool default 2021-04-12 16:05:39 SparkContext: INFO: Invoking stop() from shutdown hook 2021-04-12 16:05:39 AbstractConnector: INFO: Stopped Spark@1a703623{HTTP/1.1,[http/1.1]}{0.0.0.0:4040} 2021-04-12 16:05:39 SparkUI: INFO: Stopped Spark web UI at http://berylc-m.us-central1-b.c.human-genetics-001.internal:4040 2021-04-12 16:05:39 YarnClientSchedulerBackend: INFO: Interrupting monitor thread 2021-04-12 16:05:39 YarnClientSchedulerBackend: INFO: Shutting down all executors 2021-04-12 16:05:39 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Asking each executor to shut down 2021-04-12 16:05:39 SchedulerExtensionServices: INFO: Stopping SchedulerExtensionServices (serviceOption=None, services=List(), started=false) 2021-04-12 16:05:39 YarnClientSchedulerBackend: INFO: Stopped 2021-04-12 16:05:39 MapOutputTrackerMasterEndpoint: INFO: MapOutputTrackerMasterEndpoint stopped! 2021-04-12 16:05:39 MemoryStore: INFO: MemoryStore cleared 2021-04-12 16:05:39 BlockManager: INFO: BlockManager stopped 2021-04-12 16:05:39 BlockManagerMaster: INFO: BlockManagerMaster stopped 2021-04-12 16:05:39 OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: INFO: OutputCommitCoordinator stopped! 2021-04-12 16:05:39 SparkContext: INFO: Successfully stopped SparkContext 2021-04-12 16:05:39 ShutdownHookManager: INFO: Shutdown hook called 2021-04-12 16:05:39 ShutdownHookManager: INFO: Deleting directory /tmp/spark-42af2db0-c06a-46b8-bb0d-cff504253c2e 2021-04-12 16:05:39 ShutdownHookManager: INFO: Deleting directory /hadoop/spark/tmp/spark-985ec43d-237f-42f0-a372-1563dbed6a47/pyspark-94b1251b-d7a0-45b0-a3ab-e3059337e164 2021-04-12 16:05:39 ShutdownHookManager: INFO: Deleting directory /hadoop/spark/tmp/spark-985ec43d-237f-42f0-a372-1563dbed6a47