2020-04-02 15:09:03 Hail: WARN: This Hail JAR was compiled for Spark 2.4.0, running with Spark 2.4.5. Compatibility is not guaranteed. 2020-04-02 15:09:03 SparkContext: INFO: Running Spark version 2.4.5 2020-04-02 15:09:03 SparkContext: INFO: Submitted application: Hail 2020-04-02 15:09:03 SparkContext: INFO: Spark configuration: spark.app.name=Hail spark.driver.extraClassPath=/opt/conda/default/lib/python3.6/site-packages/hail/hail-all-spark.jar spark.driver.extraJavaOptions=-Xss4M spark.driver.maxResultSize=0 spark.driver.memory=41g spark.dynamicAllocation.enabled=true spark.dynamicAllocation.maxExecutors=10000 spark.dynamicAllocation.minExecutors=1 spark.eventLog.dir=hdfs://jg1-m/user/spark/eventlog spark.eventLog.enabled=true spark.executor.cores=2 spark.executor.extraClassPath=./hail-all-spark.jar spark.executor.extraJavaOptions=-Xss4M spark.executor.instances=2 spark.executor.memory=5586m spark.executorEnv.OPENBLAS_NUM_THREADS=1 spark.executorEnv.PYTHONHASHSEED=0 spark.hadoop.hive.execution.engine=mr spark.hadoop.io.compression.codecs=org.apache.hadoop.io.compress.DefaultCodec,is.hail.io.compress.BGzipCodec,is.hail.io.compress.BGzipCodecTbi,org.apache.hadoop.io.compress.GzipCodec spark.hadoop.mapreduce.input.fileinputformat.split.minsize=0 spark.history.fs.logDirectory=hdfs://jg1-m/user/spark/eventlog spark.jars=file:/opt/conda/default/lib/python3.6/site-packages/hail/hail-all-spark.jar spark.kryo.registrator=is.hail.kryo.HailKryoRegistrator spark.kryoserializer.buffer.max=1g spark.logConf=true spark.master=yarn spark.repl.local.jars=file:///opt/conda/default/lib/python3.6/site-packages/hail/hail-all-spark.jar spark.rpc.message.maxSize=512 spark.scheduler.minRegisteredResourcesRatio=0.0 spark.scheduler.mode=FAIR spark.serializer=org.apache.spark.serializer.KryoSerializer spark.shuffle.service.enabled=true spark.sql.cbo.enabled=true spark.sql.parquet.cacheMetadata=false spark.submit.deployMode=client spark.submit.pyFiles=/tmp/f10f5b76f6964dea8a82b0aa025c9375/pyscripts_471ajbf5.zip spark.task.maxFailures=20 spark.ui.showConsoleProgress=false spark.yarn.am.memory=640m spark.yarn.dist.jars=file:///opt/conda/default/lib/python3.6/site-packages/hail/hail-all-spark.jar spark.yarn.dist.pyFiles=file:///tmp/f10f5b76f6964dea8a82b0aa025c9375/pyscripts_471ajbf5.zip spark.yarn.historyServer.address=jg1-m:18080 spark.yarn.isPython=true spark.yarn.jars=local:/usr/lib/spark/jars/* spark.yarn.tags=dataproc_hash_29eb9810-eb21-31a1-9484-966fd777bb22,dataproc_job_f10f5b76f6964dea8a82b0aa025c9375,dataproc_master_index_0,dataproc_uuid_4a5a44d6-6938-3b48-b024-7fd172dcd66e 2020-04-02 15:09:04 SecurityManager: INFO: Changing view acls to: root 2020-04-02 15:09:04 SecurityManager: INFO: Changing modify acls to: root 2020-04-02 15:09:04 SecurityManager: INFO: Changing view acls groups to: 2020-04-02 15:09:04 SecurityManager: INFO: Changing modify acls groups to: 2020-04-02 15:09:04 SecurityManager: INFO: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(root); groups with view permissions: Set(); users with modify permissions: Set(root); groups with modify permissions: Set() 2020-04-02 15:09:04 Utils: INFO: Successfully started service 'sparkDriver' on port 38573. 2020-04-02 15:09:04 SparkEnv: INFO: Registering MapOutputTracker 2020-04-02 15:09:04 SparkEnv: INFO: Registering BlockManagerMaster 2020-04-02 15:09:04 BlockManagerMasterEndpoint: INFO: Using org.apache.spark.storage.DefaultTopologyMapper for getting topology information 2020-04-02 15:09:04 BlockManagerMasterEndpoint: INFO: BlockManagerMasterEndpoint up 2020-04-02 15:09:04 DiskBlockManager: INFO: Created local directory at /hadoop/spark/tmp/blockmgr-3806f7eb-6004-418c-8eb7-41dab0f193f1 2020-04-02 15:09:04 MemoryStore: INFO: MemoryStore started with capacity 21.7 GB 2020-04-02 15:09:04 SparkEnv: INFO: Registering OutputCommitCoordinator 2020-04-02 15:09:04 log: INFO: Logging initialized @4680ms 2020-04-02 15:09:04 Server: INFO: jetty-9.3.z-SNAPSHOT, build timestamp: unknown, git hash: unknown 2020-04-02 15:09:04 Server: INFO: Started @4810ms 2020-04-02 15:09:04 Utils: WARN: Service 'SparkUI' could not bind on port 4040. Attempting port 4041. 2020-04-02 15:09:04 AbstractConnector: INFO: Started ServerConnector@1126a507{HTTP/1.1,[http/1.1]}{0.0.0.0:4041} 2020-04-02 15:09:04 Utils: INFO: Successfully started service 'SparkUI' on port 4041. 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@7542e082{/jobs,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@18db2543{/jobs/json,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@142b419f{/jobs/job,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@3f6eec3a{/jobs/job/json,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@7ede27a9{/stages,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@30b7b654{/stages/json,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@319cc722{/stages/stage,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@7b3f6c7e{/stages/stage/json,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@2ccd01ec{/stages/pool,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@a208538{/stages/pool/json,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@47d58db7{/storage,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@478945af{/storage/json,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@38feed3{/storage/rdd,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@d08b2df{/storage/rdd/json,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@665b3efc{/environment,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@6bf2bba5{/environment/json,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@17f7297e{/executors,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@5f21ff15{/executors/json,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@60b286d3{/executors/threadDump,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@1ee336f3{/executors/threadDump/json,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@30f15088{/static,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@7f385c9a{/,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@58be24e5{/api,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@f01cbb1{/jobs/job/kill,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@6dbf9e9f{/stages/stage/kill,null,AVAILABLE,@Spark} 2020-04-02 15:09:04 SparkUI: INFO: Bound SparkUI to 0.0.0.0, and started at http://jg1-m.c.maclab-ukbb.internal:4041 2020-04-02 15:09:04 SparkContext: INFO: Added JAR file:/opt/conda/default/lib/python3.6/site-packages/hail/hail-all-spark.jar at spark://jg1-m.c.maclab-ukbb.internal:38573/jars/hail-all-spark.jar with timestamp 1585840144770 2020-04-02 15:09:04 FairSchedulableBuilder: WARN: Fair Scheduler configuration file not found so jobs will be scheduled in FIFO order. To use fair scheduling, configure pools in fairscheduler.xml or set spark.scheduler.allocation.file to a file that contains the configuration. 2020-04-02 15:09:04 FairSchedulableBuilder: INFO: Created default pool: default, schedulingMode: FIFO, minShare: 0, weight: 1 2020-04-02 15:09:04 Utils: INFO: Using initial executors = 2, max of spark.dynamicAllocation.initialExecutors, spark.dynamicAllocation.minExecutors and spark.executor.instances 2020-04-02 15:09:05 RMProxy: INFO: Connecting to ResourceManager at jg1-m/10.128.1.191:8032 2020-04-02 15:09:05 AHSProxy: INFO: Connecting to Application History server at jg1-m/10.128.1.191:10200 2020-04-02 15:09:05 Client: INFO: Requesting a new application from cluster with 98 NodeManagers 2020-04-02 15:09:05 Client: INFO: Verifying our application has not requested more than the maximum memory capability of the cluster (12288 MB per container) 2020-04-02 15:09:05 Client: INFO: Will allocate AM container, with 1024 MB memory including 384 MB overhead 2020-04-02 15:09:05 Client: INFO: Setting up container launch context for our AM 2020-04-02 15:09:05 Client: INFO: Setting up the launch environment for our AM container 2020-04-02 15:09:05 Client: INFO: Preparing resources for our AM container 2020-04-02 15:09:05 Client: INFO: Uploading resource file:/opt/conda/default/lib/python3.6/site-packages/hail/hail-all-spark.jar -> hdfs://jg1-m/user/root/.sparkStaging/application_1585836189282_0004/hail-all-spark.jar 2020-04-02 15:09:06 Client: INFO: Uploading resource file:/usr/lib/spark/python/lib/pyspark.zip -> hdfs://jg1-m/user/root/.sparkStaging/application_1585836189282_0004/pyspark.zip 2020-04-02 15:09:06 Client: INFO: Uploading resource file:/usr/lib/spark/python/lib/py4j-0.10.7-src.zip -> hdfs://jg1-m/user/root/.sparkStaging/application_1585836189282_0004/py4j-0.10.7-src.zip 2020-04-02 15:09:07 Client: INFO: Uploading resource file:/tmp/f10f5b76f6964dea8a82b0aa025c9375/pyscripts_471ajbf5.zip -> hdfs://jg1-m/user/root/.sparkStaging/application_1585836189282_0004/pyscripts_471ajbf5.zip 2020-04-02 15:09:08 Client: INFO: Uploading resource file:/hadoop/spark/tmp/spark-38dcea62-5379-4abd-818b-0372959fe086/__spark_conf__1809892400525215387.zip -> hdfs://jg1-m/user/root/.sparkStaging/application_1585836189282_0004/__spark_conf__.zip 2020-04-02 15:09:08 SecurityManager: INFO: Changing view acls to: root 2020-04-02 15:09:08 SecurityManager: INFO: Changing modify acls to: root 2020-04-02 15:09:08 SecurityManager: INFO: Changing view acls groups to: 2020-04-02 15:09:08 SecurityManager: INFO: Changing modify acls groups to: 2020-04-02 15:09:08 SecurityManager: INFO: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(root); groups with view permissions: Set(); users with modify permissions: Set(root); groups with modify permissions: Set() 2020-04-02 15:09:09 Client: INFO: Submitting application application_1585836189282_0004 to ResourceManager 2020-04-02 15:09:09 YarnClientImpl: INFO: Submitted application application_1585836189282_0004 2020-04-02 15:09:09 SchedulerExtensionServices: INFO: Starting Yarn extension services with app application_1585836189282_0004 and attemptId None 2020-04-02 15:09:10 Client: INFO: Application report for application_1585836189282_0004 (state: ACCEPTED) 2020-04-02 15:09:10 Client: INFO: client token: N/A diagnostics: AM container is launched, waiting for AM container to Register with RM ApplicationMaster host: N/A ApplicationMaster RPC port: -1 queue: default start time: 1585840149906 final status: UNDEFINED tracking URL: http://jg1-m:8088/proxy/application_1585836189282_0004/ user: root 2020-04-02 15:09:11 Client: INFO: Application report for application_1585836189282_0004 (state: ACCEPTED) 2020-04-02 15:09:12 Client: INFO: Application report for application_1585836189282_0004 (state: ACCEPTED) 2020-04-02 15:09:13 Client: INFO: Application report for application_1585836189282_0004 (state: ACCEPTED) 2020-04-02 15:09:14 Client: INFO: Application report for application_1585836189282_0004 (state: ACCEPTED) 2020-04-02 15:09:15 Client: INFO: Application report for application_1585836189282_0004 (state: ACCEPTED) 2020-04-02 15:09:16 YarnClientSchedulerBackend: INFO: Add WebUI Filter. org.apache.hadoop.yarn.server.webproxy.amfilter.AmIpFilter, Map(PROXY_HOSTS -> jg1-m, PROXY_URI_BASES -> http://jg1-m:8088/proxy/application_1585836189282_0004), /proxy/application_1585836189282_0004 2020-04-02 15:09:16 YarnSchedulerBackend$YarnSchedulerEndpoint: INFO: ApplicationMaster registered as NettyRpcEndpointRef(spark-client://YarnAM) 2020-04-02 15:09:16 Client: INFO: Application report for application_1585836189282_0004 (state: RUNNING) 2020-04-02 15:09:16 Client: INFO: client token: N/A diagnostics: N/A ApplicationMaster host: 10.128.0.78 ApplicationMaster RPC port: -1 queue: default start time: 1585840149906 final status: UNDEFINED tracking URL: http://jg1-m:8088/proxy/application_1585836189282_0004/ user: root 2020-04-02 15:09:16 YarnClientSchedulerBackend: INFO: Application application_1585836189282_0004 has started running. 2020-04-02 15:09:16 Utils: INFO: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 41033. 2020-04-02 15:09:16 NettyBlockTransferService: INFO: Server created on jg1-m.c.maclab-ukbb.internal:41033 2020-04-02 15:09:16 BlockManager: INFO: Using org.apache.spark.storage.RandomBlockReplicationPolicy for block replication policy 2020-04-02 15:09:17 BlockManagerMaster: INFO: Registering BlockManager BlockManagerId(driver, jg1-m.c.maclab-ukbb.internal, 41033, None) 2020-04-02 15:09:17 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-m.c.maclab-ukbb.internal:41033 with 21.7 GB RAM, BlockManagerId(driver, jg1-m.c.maclab-ukbb.internal, 41033, None) 2020-04-02 15:09:17 BlockManagerMaster: INFO: Registered BlockManager BlockManagerId(driver, jg1-m.c.maclab-ukbb.internal, 41033, None) 2020-04-02 15:09:17 BlockManager: INFO: external shuffle service port = 7337 2020-04-02 15:09:17 BlockManager: INFO: Initialized BlockManager: BlockManagerId(driver, jg1-m.c.maclab-ukbb.internal, 41033, None) 2020-04-02 15:09:17 JettyUtils: INFO: Adding filter org.apache.hadoop.yarn.server.webproxy.amfilter.AmIpFilter to /metrics/json. 2020-04-02 15:09:17 ContextHandler: INFO: Started o.s.j.s.ServletContextHandler@42602aeb{/metrics/json,null,AVAILABLE,@Spark} 2020-04-02 15:09:17 EventLoggingListener: INFO: Logging events to hdfs://jg1-m/user/spark/eventlog/application_1585836189282_0004 2020-04-02 15:09:17 Utils: INFO: Using initial executors = 2, max of spark.dynamicAllocation.initialExecutors, spark.dynamicAllocation.minExecutors and spark.executor.instances 2020-04-02 15:09:17 YarnClientSchedulerBackend: INFO: SchedulerBackend is ready for scheduling beginning after reached minRegisteredResourcesRatio: 0.0 2020-04-02 15:09:17 Hail: INFO: Hail temporary directory: hdfs://jg1-m/tmp/hail.8KG0Y44IFgbv 2020-04-02 15:09:17 Hail: INFO: SparkUI: http://jg1-m.c.maclab-ukbb.internal:4041 2020-04-02 15:09:17 Hail: INFO: Running Hail version 0.2.33-d1759a52836e 2020-04-02 15:09:17 SparkContext: WARN: Using an existing SparkContext; some configuration may not take effect. 2020-04-02 15:09:19 ZlibFactory: INFO: Successfully loaded & initialized native-zlib library 2020-04-02 15:09:19 CodecPool: INFO: Got brand-new decompressor [.gz] 2020-04-02 15:09:20 MemoryStore: INFO: Block broadcast_0 stored as values in memory (estimated size 2.2 MB, free 21.7 GB) 2020-04-02 15:09:20 MemoryStore: INFO: Block broadcast_0_piece0 stored as bytes in memory (estimated size 108.4 KB, free 21.7 GB) 2020-04-02 15:09:20 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-m.c.maclab-ukbb.internal:41033 (size: 108.4 KB, free: 21.7 GB) 2020-04-02 15:09:20 SparkContext: INFO: Created broadcast 0 from broadcast at SparkBackend.scala:31 2020-04-02 15:09:22 root: INFO: RegionPool: initialized for thread 19: Thread-6 2020-04-02 15:09:22 root: INFO: optimize Lowerer, initial IR: before: IR size 25: (MatrixWrite "{\"name\":\"MatrixNativeWriter\",\"path\":\"gs://broad-ukbb/broad.freeze_6/sample_qc/platform_pca/callrate.interval_filtered.mt\",\"overwrite\":true,\"stageLocally\":false,\"codecSpecJSONStr\":\"{\\n \\\"name\\\": \\\"LEB128BufferSpec\\\",\\n \\\"child\\\": {\\n \\\"name\\\": \\\"BlockingBufferSpec\\\",\\n \\\"blockSize\\\": 32768,\\n \\\"child\\\": {\\n \\\"name\\\": \\\"LZ4FastBlockBufferSpec\\\",\\n \\\"blockSize\\\": 32768,\\n \\\"child\\\": {\\n \\\"name\\\": \\\"StreamBlockBufferSpec\\\"\\n }\\n }\\n }\\n}\",\"partitions\":null,\"partitionsTypeStr\":null}" (MatrixMapRows (MatrixFilterRows (MatrixAnnotateRowsTable "__uid_3" False (MatrixRead None False False "{\"name\":\"MatrixNativeReader\",\"path\":\"gs://broad-ukbb/broad.freeze_6/sample_qc/platform_pca/callrate.mt\",\"_spec\":null}") (TableFilter (TableRead None False "{\"name\":\"TableNativeReader\",\"path\":\"gs://broad-ukbb/broad.freeze_6/sample_qc/interval_qc/coverage_by_target.autosomes.ht\",\"_spec\":null}") (Coalesce (ApplyComparisonOp GT (GetField pct_samples_20x (Ref row)) (F64 0.85)) (False)))) (Coalesce (ApplyUnaryPrimOp Bang (IsNA (GetField __uid_3 (Ref va)))) (False))) (SelectFields (interval) (MakeStruct (interval (GetField interval (Ref va))) (__uid_3 (GetField __uid_3 (Ref va))))))) 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- FoldConstants : 3.979ms, total 51.369ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- ExtractIntervalFilters : 9.994ms, total 63.054ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- Simplify : 17.661ms, total 81.232ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- ForwardLets : 14.422ms, total 96.121ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- ForwardRelationalLets : 1.870ms, total 98.512ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- PruneDeadFields : 24.065ms, total 123.085ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- FoldConstants : 0.253ms, total 123.684ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- ExtractIntervalFilters : 0.415ms, total 124.250ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- Simplify : 0.424ms, total 124.819ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- ForwardLets : 2.066ms, total 127.033ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- ForwardRelationalLets : 0.187ms, total 127.396ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize -- PruneDeadFields : 2.501ms, total 130.163ms 2020-04-02 15:09:22 root: INFO: Timer: Time taken for Optimize : 83.509ms, total 130.494ms, tagged coverage 93.2 2020-04-02 15:09:22 root: INFO: optimize Lowerer, initial IR: after: IR size 22: (MatrixWrite "{\"name\":\"MatrixNativeWriter\",\"path\":\"gs://broad-ukbb/broad.freeze_6/sample_qc/platform_pca/callrate.interval_filtered.mt\",\"overwrite\":true,\"stageLocally\":false,\"codecSpecJSONStr\":\"{\\n \\\"name\\\": \\\"LEB128BufferSpec\\\",\\n \\\"child\\\": {\\n \\\"name\\\": \\\"BlockingBufferSpec\\\",\\n \\\"blockSize\\\": 32768,\\n \\\"child\\\": {\\n \\\"name\\\": \\\"LZ4FastBlockBufferSpec\\\",\\n \\\"blockSize\\\": 32768,\\n \\\"child\\\": {\\n \\\"name\\\": \\\"StreamBlockBufferSpec\\\"\\n }\\n }\\n }\\n}\",\"partitions\":null,\"partitionsTypeStr\":null}" (MatrixMapRows (MatrixFilterRows (MatrixAnnotateRowsTable "__uid_3" False (MatrixRead None False False "{\"name\":\"MatrixNativeReader\",\"path\":\"gs://broad-ukbb/broad.freeze_6/sample_qc/platform_pca/callrate.mt\",\"_spec\":null}") (TableFilter (TableRead Table{global:Struct{},key:[interval],row:Struct{interval:Interval[Locus(GRCh38)],pct_samples_20x:Float64}} False "{\"name\":\"TableNativeReader\",\"path\":\"gs://broad-ukbb/broad.freeze_6/sample_qc/interval_qc/coverage_by_target.autosomes.ht\",\"_spec\":null}") (Coalesce (ApplyComparisonOp GT (GetField pct_samples_20x (Ref row)) (F64 0.85)) (False)))) (Coalesce (ApplyUnaryPrimOp Bang (IsNA (GetField __uid_3 (Ref va)))) (False))) (MakeStruct (interval (GetField interval (Ref va)))))) 2020-04-02 15:09:22 root: INFO: Timer: Time taken for LowerMatrixToTable -- Verify : 0.860ms, total 136.970ms 2020-04-02 15:09:23 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.56:53940) with ID 2 2020-04-02 15:09:23 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.20:45504) with ID 1 2020-04-02 15:09:23 ExecutorAllocationManager: INFO: New executor 2 has registered (new total is 1) 2020-04-02 15:09:23 ExecutorAllocationManager: INFO: New executor 1 has registered (new total is 2) 2020-04-02 15:09:23 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-62.c.maclab-ukbb.internal:44129 with 2.7 GB RAM, BlockManagerId(2, jg1-w-62.c.maclab-ukbb.internal, 44129, None) 2020-04-02 15:09:23 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-29.c.maclab-ukbb.internal:46411 with 2.7 GB RAM, BlockManagerId(1, jg1-w-29.c.maclab-ukbb.internal, 46411, None) 2020-04-02 15:09:23 root: INFO: Timer: Time taken for LowerMatrixToTable -- LoweringTransformation : 1.408s, total 1.545s 2020-04-02 15:09:23 root: INFO: Timer: Time taken for LowerMatrixToTable -- Verify : 0.458ms, total 1.546s 2020-04-02 15:09:23 root: INFO: Timer: Time taken for LowerMatrixToTable : 1.411s, total 1.547s, tagged coverage 99.9 2020-04-02 15:09:24 root: INFO: optimize LowerMatrixToTable, post Lowering: before: IR size 39: (TableWrite "{\"writer\":{\"path\":\"gs://broad-ukbb/broad.freeze_6/sample_qc/platform_pca/callrate.interval_filtered.mt\",\"overwrite\":true,\"stageLocally\":false,\"codecSpecJSONStr\":\"{\\n \\\"name\\\": \\\"LEB128BufferSpec\\\",\\n \\\"child\\\": {\\n \\\"name\\\": \\\"BlockingBufferSpec\\\",\\n \\\"blockSize\\\": 32768,\\n \\\"child\\\": {\\n \\\"name\\\": \\\"LZ4FastBlockBufferSpec\\\",\\n \\\"blockSize\\\": 32768,\\n \\\"child\\\": {\\n \\\"name\\\": \\\"StreamBlockBufferSpec\\\"\\n }\\n }\\n }\\n}\",\"partitions\":null,\"partitionsTypeStr\":null},\"colsFieldName\":\"__cols\",\"entriesFieldName\":\"the entries! 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(InsertFields (Ref global) None (__cols (ToArray (ReadPartition "{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{s:EBinary}\",\"_vType\":\"Struct{s:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}}" Struct{s:String} (Str "gs://broad...")))))) (TableFilter (TableRead Table{global:Struct{},key:[interval],row:Struct{interval:Interval[Locus(GRCh38)],pct_samples_20x:Float64}} False "{\"name\":\"TableNativeReader\",\"path\":\"gs://broad-ukbb/broad.freeze_6/sample_qc/interval_qc/coverage_by_target.autosomes.ht\",\"_spec\":null}") (Coalesce (ApplyComparisonOp GT (GetField pct_samples_20x (Ref row)) (F64 0.85)) (False)))) (Coalesce (ApplyUnaryPrimOp Bang (IsNA (GetField __uid_3 (SelectFields (interval __uid_3) (Ref row))))) (False))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_0 (MakeStruct) (MakeStruct (interval (GetField interval (SelectFields (interval __uid_3) (Ref row)))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- FoldConstants : 11.694ms, total 1.779s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- ExtractIntervalFilters : 0.931ms, total 1.780s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- Simplify : 0.988ms, total 1.781s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- ForwardLets : 7.674ms, total 1.789s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- ForwardRelationalLets : 0.284ms, total 1.790s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- PruneDeadFields : 9.736ms, total 1.799s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- FoldConstants : 0.440ms, total 1.800s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- ExtractIntervalFilters : 0.696ms, total 1.801s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- Simplify : 2.087ms, total 1.804s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- ForwardLets : 2.665ms, total 1.806s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- ForwardRelationalLets : 0.244ms, total 1.807s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- PruneDeadFields : 4.641ms, total 1.812s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- FoldConstants : 0.406ms, total 1.814s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- ExtractIntervalFilters : 0.643ms, total 1.815s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- Simplify : 0.676ms, total 1.816s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- ForwardLets : 2.691ms, total 1.819s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- ForwardRelationalLets : 0.247ms, total 1.819s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize -- PruneDeadFields : 4.599ms, total 1.824s 2020-04-02 15:09:24 root: INFO: Timer: Time taken for Optimize : 57.411ms, total 1.824s, tagged coverage 89.4 2020-04-02 15:09:24 root: INFO: optimize LowerMatrixToTable, post Lowering: after: IR size 30: (TableWrite "{\"writer\":{\"path\":\"gs://broad-ukbb/broad.freeze_6/sample_qc/platform_pca/callrate.interval_filtered.mt\",\"overwrite\":true,\"stageLocally\":false,\"codecSpecJSONStr\":\"{\\n \\\"name\\\": \\\"LEB128BufferSpec\\\",\\n \\\"child\\\": {\\n \\\"name\\\": \\\"BlockingBufferSpec\\\",\\n \\\"blockSize\\\": 32768,\\n \\\"child\\\": {\\n \\\"name\\\": \\\"LZ4FastBlockBufferSpec\\\",\\n \\\"blockSize\\\": 32768,\\n \\\"child\\\": {\\n \\\"name\\\": \\\"StreamBlockBufferSpec\\\"\\n }\\n }\\n }\\n}\",\"partitions\":null,\"partitionsTypeStr\":null},\"colsFieldName\":\"__cols\",\"entriesFieldName\":\"the entries! [877f12a8827e18f61222c6c8c5fb04a8]\",\"colKey\":[\"s\"]}" (TableMapRows (TableFilter (TableLeftJoinRightDistinct __uid_3 (TableMapGlobals (TableRead None False 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(InsertFields (Ref global) None (__cols (ToArray (ReadPartition "{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{s:EBinary}\",\"_vType\":\"Struct{s:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}}" Struct{s:String} (Str "gs://broad...")))))) (TableFilter (TableRead Table{global:Struct{},key:[interval],row:Struct{interval:Interval[Locus(GRCh38)],pct_samples_20x:Float64}} False "{\"name\":\"TableNativeReader\",\"path\":\"gs://broad-ukbb/broad.freeze_6/sample_qc/interval_qc/coverage_by_target.autosomes.ht\",\"_spec\":null}") (Coalesce (ApplyComparisonOp GT (GetField pct_samples_20x (Ref row)) (F64 0.85)) (False)))) (Coalesce (ApplyUnaryPrimOp Bang (IsNA (GetField __uid_3 (Ref row)))) (False))) (MakeStruct (interval (GetField interval (Ref row))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))) 2020-04-02 15:09:24 root: INFO: Timer: Time taken for InterpretNonCompilable -- Verify : 0.134ms, total 1.966s 2020-04-02 15:09:24 root: INFO: interpreting non compilable node: TableWrite 2020-04-02 15:09:24 root: INFO: decoder cache miss (0 hits, 1 misses, 0.000 2020-04-02 15:09:24 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeDecode_0. 2020-04-02 15:09:24 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeDecode_0.apply 2020-04-02 15:09:24 root: INFO: instruction count: 14: is/hail/codegen/generated/C_etypeDecode_0.__m1DECODE_o_struct_of_END_TO_o_tuple_of_END 2020-04-02 15:09:26 MemoryStore: INFO: Block broadcast_1 stored as values in memory (estimated size 401.3 KB, free 21.7 GB) 2020-04-02 15:09:26 MemoryStore: INFO: Block broadcast_1_piece0 stored as bytes in memory (estimated size 28.2 KB, free 21.7 GB) 2020-04-02 15:09:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-m.c.maclab-ukbb.internal:41033 (size: 28.2 KB, free: 21.7 GB) 2020-04-02 15:09:26 SparkContext: INFO: Created broadcast 1 from broadcast at HailContext.scala:590 2020-04-02 15:09:26 root: INFO: decoder cache miss (0 hits, 2 misses, 0.000 2020-04-02 15:09:26 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeDecode_1. 2020-04-02 15:09:26 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeDecode_1.apply 2020-04-02 15:09:26 root: INFO: instruction count: 31: is/hail/codegen/generated/C_etypeDecode_1.__m1DECODE_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND_TO_o_tuple_of_o_interval_of_o_locusEND 2020-04-02 15:09:26 root: INFO: instruction count: 28: is/hail/codegen/generated/C_etypeDecode_1.__m2read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_1.__m3INPLACE_DECODE_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND_TO_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND 2020-04-02 15:09:26 root: INFO: instruction count: 67: is/hail/codegen/generated/C_etypeDecode_1.__m4read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 14: is/hail/codegen/generated/C_etypeDecode_1.__m5INPLACE_DECODE_o_struct_of_r_binaryANDr_int32END_TO_o_tuple_of_r_binaryANDr_int32END 2020-04-02 15:09:26 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeDecode_1.__m6read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 29: is/hail/codegen/generated/C_etypeDecode_1.__m7INPLACE_DECODE_r_binary_TO_r_binary 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_1.__m8INPLACE_DECODE_r_int32_TO_r_int32 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_1.__m9INPLACE_DECODE_r_bool_TO_r_bool 2020-04-02 15:09:26 root: INFO: decoder cache miss (0 hits, 3 misses, 0.000 2020-04-02 15:09:26 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeDecode_2. 2020-04-02 15:09:26 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeDecode_2.apply 2020-04-02 15:09:26 root: INFO: instruction count: 31: is/hail/codegen/generated/C_etypeDecode_2.__m1DECODE_o_struct_of_o_array_of_r_struct_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32ENDEND_TO_o_tuple_of_o_array_of_r_tuple_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32ENDEND 2020-04-02 15:09:26 root: INFO: instruction count: 28: is/hail/codegen/generated/C_etypeDecode_2.__m2read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 54: is/hail/codegen/generated/C_etypeDecode_2.__m3INPLACE_DECODE_o_array_of_r_struct_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32END_TO_o_array_of_r_tuple_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32END 2020-04-02 15:09:26 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_2.__m4INPLACE_DECODE_r_struct_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32END_TO_r_tuple_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32END 2020-04-02 15:09:26 root: INFO: instruction count: 178: is/hail/codegen/generated/C_etypeDecode_2.__m5read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_2.__m6INPLACE_DECODE_o_int64_TO_o_int64 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_2.__m7INPLACE_DECODE_o_float64_TO_o_float64 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_2.__m8INPLACE_DECODE_o_float32_TO_o_float32 2020-04-02 15:09:26 root: INFO: optimize Lowerer, initial IR: before: IR size 4: (InsertFields (In PCStruct{interval:PCInterval[PCLocus(GRCh38)]} 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}]} 1)))) 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.213ms, total 4.461s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.084ms, total 4.461s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.236ms, total 4.462s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 1.613ms, total 4.464s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.065ms, total 4.464s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.541ms, total 4.465s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 3.780ms, total 4.465s, tagged coverage 72.8 2020-04-02 15:09:26 root: INFO: optimize Lowerer, initial IR: after: IR size 4: (InsertFields (In PCStruct{interval:PCInterval[PCLocus(GRCh38)]} 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}]} 1)))) 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- Verify : 0.333ms, total 4.466s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- LoweringTransformation : 0.336ms, total 4.466s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- Verify : 0.025ms, total 4.466s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR : 1.073ms, total 4.466s, tagged coverage 64.7 2020-04-02 15:09:26 root: INFO: optimize InlineApplyIR, post Lowering: before: IR size 4: (InsertFields (In PCStruct{interval:PCInterval[PCLocus(GRCh38)]} 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}]} 1)))) 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.103ms, total 4.467s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.044ms, total 4.467s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.101ms, total 4.467s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.365ms, total 4.468s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.068ms, total 4.468s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.348ms, total 4.468s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 1.779ms, total 4.469s, tagged coverage 57.9 2020-04-02 15:09:26 root: INFO: optimize InlineApplyIR, post Lowering: after: IR size 4: (InsertFields (In PCStruct{interval:PCInterval[PCLocus(GRCh38)]} 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}]} 1)))) 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- Verify : 0.017ms, total 4.469s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- LoweringTransformation : 0.628ms, total 4.470s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- Verify : 0.301ms, total 4.470s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs : 1.414ms, total 4.471s, tagged coverage 67.0 2020-04-02 15:09:26 root: INFO: optimize LowerArrayAggsToRunAggs, post Lowering: before: IR size 4: (InsertFields (In PCStruct{interval:PCInterval[PCLocus(GRCh38)]} 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}]} 1)))) 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.073ms, total 4.471s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.044ms, total 4.471s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.114ms, total 4.471s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.437ms, total 4.472s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.068ms, total 4.472s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.618ms, total 4.473s 2020-04-02 15:09:26 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 2.174ms, total 4.473s, tagged coverage 62.3 2020-04-02 15:09:26 root: INFO: optimize LowerArrayAggsToRunAggs, post Lowering: after: IR size 4: (InsertFields (In PCStruct{interval:PCInterval[PCLocus(GRCh38)]} 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}]} 1)))) 2020-04-02 15:09:26 root: INFO: instruction count: 3: is/hail/codegen/generated/C3. 2020-04-02 15:09:26 root: INFO: instruction count: 111: is/hail/codegen/generated/C3.apply 2020-04-02 15:09:26 root: INFO: instruction count: 22: is/hail/codegen/generated/C3.apply 2020-04-02 15:09:26 root: INFO: instruction count: 10: is/hail/codegen/generated/C3.__m5addIRIntermediate 2020-04-02 15:09:26 root: INFO: instruction count: 7: is/hail/codegen/generated/C3.__m6addIRIntermediate 2020-04-02 15:09:26 root: INFO: instruction count: 14: is/hail/codegen/generated/C3.setPartitionIndex 2020-04-02 15:09:26 root: INFO: instruction count: 6: is/hail/codegen/generated/C3.addPartitionRegion 2020-04-02 15:09:26 root: INFO: decoder cache miss (0 hits, 4 misses, 0.000 2020-04-02 15:09:26 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeDecode_4. 2020-04-02 15:09:26 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeDecode_4.apply 2020-04-02 15:09:26 root: INFO: instruction count: 20: is/hail/codegen/generated/C_etypeDecode_4.__m1DECODE_o_struct_of_r_int64ANDr_array_of_r_struct_of_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDENDEND_TO_o_tuple_of_r_int64ANDr_array_of_r_tuple_of_o_tuple_of_o_interval_of_o_locusENDANDr_int64ANDr_tuple_of_o_int64ENDENDEND 2020-04-02 15:09:26 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeDecode_4.__m2read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_4.__m3INPLACE_DECODE_r_int64_TO_r_int64 2020-04-02 15:09:26 root: INFO: instruction count: 54: is/hail/codegen/generated/C_etypeDecode_4.__m4INPLACE_DECODE_r_array_of_r_struct_of_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDEND_TO_r_array_of_r_tuple_of_o_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_tuple_of_o_int64ENDEND 2020-04-02 15:09:26 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_4.__m5INPLACE_DECODE_r_struct_of_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDEND_TO_r_tuple_of_o_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_tuple_of_o_int64ENDEND 2020-04-02 15:09:26 root: INFO: instruction count: 42: is/hail/codegen/generated/C_etypeDecode_4.__m6read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_4.__m7INPLACE_DECODE_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND_TO_o_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND 2020-04-02 15:09:26 root: INFO: instruction count: 28: is/hail/codegen/generated/C_etypeDecode_4.__m8read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_4.__m9INPLACE_DECODE_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND_TO_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND 2020-04-02 15:09:26 root: INFO: instruction count: 67: is/hail/codegen/generated/C_etypeDecode_4.__m10read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 14: is/hail/codegen/generated/C_etypeDecode_4.__m11INPLACE_DECODE_o_struct_of_r_binaryANDr_int32END_TO_o_tuple_of_r_binaryANDr_int32END 2020-04-02 15:09:26 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeDecode_4.__m12read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 29: is/hail/codegen/generated/C_etypeDecode_4.__m13INPLACE_DECODE_r_binary_TO_r_binary 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_4.__m14INPLACE_DECODE_r_int32_TO_r_int32 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_4.__m15INPLACE_DECODE_r_bool_TO_r_bool 2020-04-02 15:09:26 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_4.__m16INPLACE_DECODE_r_struct_of_o_int64END_TO_r_tuple_of_o_int64END 2020-04-02 15:09:26 root: INFO: instruction count: 28: is/hail/codegen/generated/C_etypeDecode_4.__m17read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_4.__m18INPLACE_DECODE_o_int64_TO_o_int64 2020-04-02 15:09:26 root: INFO: decoder cache miss (0 hits, 5 misses, 0.000 2020-04-02 15:09:26 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeDecode_5. 2020-04-02 15:09:26 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeDecode_5.apply 2020-04-02 15:09:26 root: INFO: instruction count: 20: is/hail/codegen/generated/C_etypeDecode_5.__m1DECODE_o_struct_of_r_array_of_r_struct_of_r_int64ANDr_int64ANDo_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDENDEND_TO_o_tuple_of_r_array_of_r_tuple_of_r_int64ANDr_int64ANDo_tuple_of_o_interval_of_o_locusENDANDr_int64ANDr_tuple_of_o_int64ENDENDEND 2020-04-02 15:09:26 root: INFO: instruction count: 10: is/hail/codegen/generated/C_etypeDecode_5.__m2read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 54: is/hail/codegen/generated/C_etypeDecode_5.__m3INPLACE_DECODE_r_array_of_r_struct_of_r_int64ANDr_int64ANDo_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDEND_TO_r_array_of_r_tuple_of_r_int64ANDr_int64ANDo_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_tuple_of_o_int64ENDEND 2020-04-02 15:09:26 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_5.__m4INPLACE_DECODE_r_struct_of_r_int64ANDr_int64ANDo_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDEND_TO_r_tuple_of_r_int64ANDr_int64ANDo_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_tuple_of_o_int64ENDEND 2020-04-02 15:09:26 root: INFO: instruction count: 56: is/hail/codegen/generated/C_etypeDecode_5.__m5read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_5.__m6INPLACE_DECODE_r_int64_TO_r_int64 2020-04-02 15:09:26 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_5.__m7INPLACE_DECODE_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND_TO_o_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND 2020-04-02 15:09:26 root: INFO: instruction count: 28: is/hail/codegen/generated/C_etypeDecode_5.__m8read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_5.__m9INPLACE_DECODE_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND_TO_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND 2020-04-02 15:09:26 root: INFO: instruction count: 67: is/hail/codegen/generated/C_etypeDecode_5.__m10read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 14: is/hail/codegen/generated/C_etypeDecode_5.__m11INPLACE_DECODE_o_struct_of_r_binaryANDr_int32END_TO_o_tuple_of_r_binaryANDr_int32END 2020-04-02 15:09:26 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeDecode_5.__m12read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 29: is/hail/codegen/generated/C_etypeDecode_5.__m13INPLACE_DECODE_r_binary_TO_r_binary 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_5.__m14INPLACE_DECODE_r_int32_TO_r_int32 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_5.__m15INPLACE_DECODE_r_bool_TO_r_bool 2020-04-02 15:09:26 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_5.__m16INPLACE_DECODE_r_struct_of_o_int64END_TO_r_tuple_of_o_int64END 2020-04-02 15:09:26 root: INFO: instruction count: 28: is/hail/codegen/generated/C_etypeDecode_5.__m17read_fields_group_0 2020-04-02 15:09:26 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_5.__m18INPLACE_DECODE_o_int64_TO_o_int64 2020-04-02 15:09:27 root: INFO: optimize Lowerer, initial IR: before: IR size 5: (InsertFields (In PCStruct{} 0) None (__cols (ToArray (ReadPartition "{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{s:EBinary}\",\"_vType\":\"Struct{s:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}}" Struct{s:String} (Str "gs://broad..."))))) 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.204ms, total 4.900s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.052ms, total 4.901s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.090ms, total 4.901s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.396ms, total 4.901s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.072ms, total 4.902s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.515ms, total 4.902s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 2.152ms, total 4.902s, tagged coverage 61.8 2020-04-02 15:09:27 root: INFO: optimize Lowerer, initial IR: after: IR size 5: (InsertFields (In PCStruct{} 0) None (__cols (ToArray (ReadPartition "{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{s:EBinary}\",\"_vType\":\"Struct{s:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}}" Struct{s:String} (Str "gs://broad..."))))) 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- Verify : 0.020ms, total 4.903s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- LoweringTransformation : 0.024ms, total 4.903s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- Verify : 0.021ms, total 4.903s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR : 0.325ms, total 4.903s, tagged coverage 19.7 2020-04-02 15:09:27 root: INFO: optimize InlineApplyIR, post Lowering: before: IR size 5: (InsertFields (In PCStruct{} 0) None (__cols (ToArray (ReadPartition "{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{s:EBinary}\",\"_vType\":\"Struct{s:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}}" Struct{s:String} (Str "gs://broad..."))))) 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.070ms, total 4.904s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.041ms, total 4.904s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.108ms, total 4.904s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.408ms, total 4.905s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.111ms, total 4.905s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.306ms, total 4.906s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 1.724ms, total 4.906s, tagged coverage 60.5 2020-04-02 15:09:27 root: INFO: optimize InlineApplyIR, post Lowering: after: IR size 5: (InsertFields (In PCStruct{} 0) None (__cols (ToArray (ReadPartition "{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{s:EBinary}\",\"_vType\":\"Struct{s:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}}" Struct{s:String} (Str "gs://broad..."))))) 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- Verify : 0.022ms, total 4.907s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- LoweringTransformation : 0.025ms, total 4.907s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- Verify : 0.018ms, total 4.907s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs : 0.422ms, total 4.907s, tagged coverage 15.5 2020-04-02 15:09:27 root: INFO: optimize LowerArrayAggsToRunAggs, post Lowering: before: IR size 5: (InsertFields (In PCStruct{} 0) None (__cols (ToArray (ReadPartition "{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{s:EBinary}\",\"_vType\":\"Struct{s:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}}" Struct{s:String} (Str "gs://broad..."))))) 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.070ms, total 4.908s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.042ms, total 4.908s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.092ms, total 4.908s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.373ms, total 4.909s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.085ms, total 4.909s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.326ms, total 4.910s 2020-04-02 15:09:27 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 1.959ms, total 4.910s, tagged coverage 50.4 2020-04-02 15:09:27 root: INFO: optimize LowerArrayAggsToRunAggs, post Lowering: after: IR size 5: (InsertFields (In PCStruct{} 0) None (__cols (ToArray (ReadPartition "{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{s:EBinary}\",\"_vType\":\"Struct{s:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}}" Struct{s:String} (Str "gs://broad..."))))) 2020-04-02 15:09:27 root: INFO: decoder cache miss (0 hits, 6 misses, 0.000 2020-04-02 15:09:27 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeDecode_7. 2020-04-02 15:09:27 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeDecode_7.apply 2020-04-02 15:09:27 root: INFO: instruction count: 31: is/hail/codegen/generated/C_etypeDecode_7.__m1DECODE_o_struct_of_o_binaryEND_TO_o_tuple_of_o_stringEND 2020-04-02 15:09:27 root: INFO: instruction count: 28: is/hail/codegen/generated/C_etypeDecode_7.__m2read_fields_group_0 2020-04-02 15:09:27 root: INFO: instruction count: 29: is/hail/codegen/generated/C_etypeDecode_7.__m3INPLACE_DECODE_o_binary_TO_o_binary 2020-04-02 15:09:27 root: INFO: encoder cache miss (0 hits, 1 misses, 0.000) 2020-04-02 15:09:27 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeEncode_8. 2020-04-02 15:09:27 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_8.apply 2020-04-02 15:09:27 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_8.__m1ENCODE_r_tuple_of_r_stringEND_TO_r_struct_of_r_binaryEND 2020-04-02 15:09:27 root: INFO: instruction count: 18: is/hail/codegen/generated/C_etypeEncode_8.__m2write_fields_group_0 2020-04-02 15:09:27 root: INFO: instruction count: 16: is/hail/codegen/generated/C_etypeEncode_8.__m3ENCODE_r_binary_TO_r_binary 2020-04-02 15:09:27 MemoryStore: INFO: Block broadcast_2 stored as values in memory (estimated size 160.0 B, free 21.7 GB) 2020-04-02 15:09:27 MemoryStore: INFO: Block broadcast_2_piece0 stored as bytes in memory (estimated size 145.0 B, free 21.7 GB) 2020-04-02 15:09:27 BlockManagerInfo: INFO: Added broadcast_2_piece0 in memory on jg1-m.c.maclab-ukbb.internal:41033 (size: 145.0 B, free: 21.7 GB) 2020-04-02 15:09:27 SparkContext: INFO: Created broadcast 2 from broadcast at SparkBackend.scala:31 2020-04-02 15:09:27 root: INFO: instruction count: 3: is/hail/codegen/generated/C6. 2020-04-02 15:09:27 root: INFO: instruction count: 348: is/hail/codegen/generated/C6.apply 2020-04-02 15:09:27 root: INFO: instruction count: 16: is/hail/codegen/generated/C6.apply 2020-04-02 15:09:27 root: INFO: instruction count: 31: is/hail/codegen/generated/C6.__m5DECODE_o_struct_of_o_binaryEND_TO_o_tuple_of_o_stringEND 2020-04-02 15:09:27 root: INFO: instruction count: 28: is/hail/codegen/generated/C6.__m6read_fields_group_0 2020-04-02 15:09:27 root: INFO: instruction count: 29: is/hail/codegen/generated/C6.__m7INPLACE_DECODE_o_binary_TO_o_binary 2020-04-02 15:09:27 root: INFO: instruction count: 6: is/hail/codegen/generated/C6.addFS 2020-04-02 15:09:27 root: INFO: instruction count: 12: is/hail/codegen/generated/C6.__m15method 2020-04-02 15:09:27 root: INFO: instruction count: 10: is/hail/codegen/generated/C6.__m16addIRIntermediate 2020-04-02 15:09:27 root: INFO: instruction count: 7: is/hail/codegen/generated/C6.__m17addIRIntermediate 2020-04-02 15:09:27 root: INFO: instruction count: 14: is/hail/codegen/generated/C6.setPartitionIndex 2020-04-02 15:09:27 root: INFO: instruction count: 6: is/hail/codegen/generated/C6.addPartitionRegion 2020-04-02 15:09:27 root: INFO: instruction count: 20: is/hail/codegen/generated/C6.__m19DECODE_r_struct_of_r_binaryEND_TO_r_tuple_of_r_stringEND 2020-04-02 15:09:27 root: INFO: instruction count: 10: is/hail/codegen/generated/C6.__m20read_fields_group_0 2020-04-02 15:09:27 root: INFO: instruction count: 29: is/hail/codegen/generated/C6.__m21INPLACE_DECODE_r_binary_TO_r_binary 2020-04-02 15:09:27 root: INFO: instruction count: 32: is/hail/codegen/generated/C6.addLiterals 2020-04-02 15:09:27 root: INFO: RegionPool: REPORT_THRESHOLD: 256.0K allocated (256.0K blocks / 0 chunks), thread 19: Thread-6 2020-04-02 15:09:27 root: INFO: RegionPool: REPORT_THRESHOLD: 512.0K allocated (512.0K blocks / 0 chunks), thread 19: Thread-6 2020-04-02 15:09:27 root: INFO: RegionPool: REPORT_THRESHOLD: 1.0M allocated (1.0M blocks / 0 chunks), thread 19: Thread-6 2020-04-02 15:09:27 root: INFO: RegionPool: REPORT_THRESHOLD: 2.0M allocated (2.0M blocks / 0 chunks), thread 19: Thread-6 2020-04-02 15:09:27 root: INFO: RegionPool: REPORT_THRESHOLD: 4.0M allocated (4.0M blocks / 0 chunks), thread 19: Thread-6 2020-04-02 15:09:27 root: INFO: RegionPool: REPORT_THRESHOLD: 8.0M allocated (8.0M blocks / 0 chunks), thread 19: Thread-6 2020-04-02 15:09:27 root: INFO: RegionPool: REPORT_THRESHOLD: 18.5M allocated (13.9M blocks / 4.6M chunks), thread 19: Thread-6 2020-04-02 15:09:27 root: INFO: decoder cache hit 2020-04-02 15:09:28 root: INFO: decoder cache miss (1 hits, 7 misses, 0.125 2020-04-02 15:09:28 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeDecode_9. 2020-04-02 15:09:28 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeDecode_9.apply 2020-04-02 15:09:28 root: INFO: instruction count: 31: is/hail/codegen/generated/C_etypeDecode_9.__m1DECODE_r_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END_TO_r_tuple_of_o_interval_of_o_locusANDo_float64END 2020-04-02 15:09:28 root: INFO: instruction count: 109: is/hail/codegen/generated/C_etypeDecode_9.__m2read_fields_group_0 2020-04-02 15:09:28 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_9.__m3INPLACE_DECODE_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND_TO_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND 2020-04-02 15:09:28 root: INFO: instruction count: 67: is/hail/codegen/generated/C_etypeDecode_9.__m4read_fields_group_0 2020-04-02 15:09:28 root: INFO: instruction count: 14: is/hail/codegen/generated/C_etypeDecode_9.__m5INPLACE_DECODE_o_struct_of_r_binaryANDr_int32END_TO_o_tuple_of_r_binaryANDr_int32END 2020-04-02 15:09:28 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeDecode_9.__m6read_fields_group_0 2020-04-02 15:09:28 root: INFO: instruction count: 29: is/hail/codegen/generated/C_etypeDecode_9.__m7INPLACE_DECODE_r_binary_TO_r_binary 2020-04-02 15:09:28 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_9.__m8INPLACE_DECODE_r_int32_TO_r_int32 2020-04-02 15:09:28 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_9.__m9INPLACE_DECODE_r_bool_TO_r_bool 2020-04-02 15:09:28 root: INFO: instruction count: 5: is/hail/codegen/generated/C_etypeDecode_9.__m10SKIP_o_float64 2020-04-02 15:09:28 root: INFO: instruction count: 8: is/hail/codegen/generated/C_etypeDecode_9.__m11INPLACE_DECODE_o_float64_TO_o_float64 2020-04-02 15:09:28 root: INFO: optimize Lowerer, initial IR: before: IR size 6: (Coalesce (ApplyComparisonOp GT (GetField pct_samples_20x (In +PCStruct{interval:PCInterval[PCLocus(GRCh38)],pct_samples_20x:PFloat64} 0)) (F64 0.85)) (False)) 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.227ms, total 6.432s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.050ms, total 6.432s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.153ms, total 6.432s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.676ms, total 6.433s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.079ms, total 6.433s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.356ms, total 6.434s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 2.619ms, total 6.434s, tagged coverage 58.8 2020-04-02 15:09:28 root: INFO: optimize Lowerer, initial IR: after: IR size 6: (Coalesce (ApplyComparisonOp GT (GetField pct_samples_20x (In +PCStruct{interval:PCInterval[PCLocus(GRCh38)],pct_samples_20x:PFloat64} 0)) (F64 0.85)) (False)) 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- Verify : 0.030ms, total 6.435s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- LoweringTransformation : 0.035ms, total 6.435s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- Verify : 0.030ms, total 6.435s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR : 0.482ms, total 6.435s, tagged coverage 19.6 2020-04-02 15:09:28 root: INFO: optimize InlineApplyIR, post Lowering: before: IR size 6: (Coalesce (ApplyComparisonOp GT (GetField pct_samples_20x (In +PCStruct{interval:PCInterval[PCLocus(GRCh38)],pct_samples_20x:PFloat64} 0)) (F64 0.85)) (False)) 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.105ms, total 6.436s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.037ms, total 6.436s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.139ms, total 6.436s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.553ms, total 6.437s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.078ms, total 6.437s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.392ms, total 6.438s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 2.669ms, total 6.438s, tagged coverage 48.9 2020-04-02 15:09:28 root: INFO: optimize InlineApplyIR, post Lowering: after: IR size 6: (Coalesce (ApplyComparisonOp GT (GetField pct_samples_20x (In +PCStruct{interval:PCInterval[PCLocus(GRCh38)],pct_samples_20x:PFloat64} 0)) (F64 0.85)) (False)) 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- Verify : 0.034ms, total 6.439s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- LoweringTransformation : 0.048ms, total 6.439s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- Verify : 0.031ms, total 6.439s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs : 0.552ms, total 6.439s, tagged coverage 20.4 2020-04-02 15:09:28 root: INFO: optimize LowerArrayAggsToRunAggs, post Lowering: before: IR size 6: (Coalesce (ApplyComparisonOp GT (GetField pct_samples_20x (In +PCStruct{interval:PCInterval[PCLocus(GRCh38)],pct_samples_20x:PFloat64} 0)) (F64 0.85)) (False)) 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.100ms, total 6.440s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.040ms, total 6.440s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.229ms, total 6.440s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.501ms, total 6.441s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.095ms, total 6.441s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.351ms, total 6.442s 2020-04-02 15:09:28 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 2.506ms, total 6.442s, tagged coverage 52.5 2020-04-02 15:09:28 root: INFO: optimize LowerArrayAggsToRunAggs, post Lowering: after: IR size 6: (Coalesce (ApplyComparisonOp GT (GetField pct_samples_20x (In +PCStruct{interval:PCInterval[PCLocus(GRCh38)],pct_samples_20x:PFloat64} 0)) (F64 0.85)) (False)) 2020-04-02 15:09:28 root: INFO: instruction count: 3: is/hail/codegen/generated/C10. 2020-04-02 15:09:28 root: INFO: instruction count: 73: is/hail/codegen/generated/C10.apply 2020-04-02 15:09:28 root: INFO: instruction count: 22: is/hail/codegen/generated/C10.apply 2020-04-02 15:09:28 root: INFO: instruction count: 39: is/hail/codegen/generated/C10.__m2method 2020-04-02 15:09:28 root: INFO: instruction count: 14: is/hail/codegen/generated/C10.setPartitionIndex 2020-04-02 15:09:28 root: INFO: instruction count: 6: is/hail/codegen/generated/C10.addPartitionRegion 2020-04-02 15:09:28 root: INFO: encoder cache miss (0 hits, 2 misses, 0.000) 2020-04-02 15:09:28 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeEncode_11. 2020-04-02 15:09:28 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_11.apply 2020-04-02 15:09:28 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeEncode_11.__m1ENCODE_o_tuple_of_END_TO_o_struct_of_END 2020-04-02 15:09:28 root: INFO: decoder cache hit 2020-04-02 15:09:28 MemoryStore: INFO: Block broadcast_3 stored as values in memory (estimated size 2.6 KB, free 21.7 GB) 2020-04-02 15:09:28 MemoryStore: INFO: Block broadcast_3_piece0 stored as bytes in memory (estimated size 947.0 B, free 21.7 GB) 2020-04-02 15:09:28 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-m.c.maclab-ukbb.internal:41033 (size: 947.0 B, free: 21.7 GB) 2020-04-02 15:09:28 SparkContext: INFO: Created broadcast 3 from broadcast at SparkBackend.scala:31 2020-04-02 15:09:29 MemoryStore: INFO: Block broadcast_4 stored as values in memory (estimated size 13.7 MB, free 21.7 GB) 2020-04-02 15:09:29 MemoryStore: INFO: Block broadcast_4_piece0 stored as bytes in memory (estimated size 422.6 KB, free 21.7 GB) 2020-04-02 15:09:29 BlockManagerInfo: INFO: Added broadcast_4_piece0 in memory on jg1-m.c.maclab-ukbb.internal:41033 (size: 422.6 KB, free: 21.7 GB) 2020-04-02 15:09:29 SparkContext: INFO: Created broadcast 4 from broadcast at RVDPartitioner.scala:87 2020-04-02 15:09:29 MemoryStore: INFO: Block broadcast_5 stored as values in memory (estimated size 23.0 MB, free 21.7 GB) 2020-04-02 15:09:29 MemoryStore: INFO: Block broadcast_5_piece0 stored as bytes in memory (estimated size 621.1 KB, free 21.7 GB) 2020-04-02 15:09:29 BlockManagerInfo: INFO: Added broadcast_5_piece0 in memory on jg1-m.c.maclab-ukbb.internal:41033 (size: 621.1 KB, free: 21.7 GB) 2020-04-02 15:09:29 SparkContext: INFO: Created broadcast 5 from broadcast at RepartitionedOrderedRDD2.scala:36 2020-04-02 15:09:29 root: INFO: optimize Lowerer, initial IR: before: IR size 6: (Coalesce (ApplyUnaryPrimOp Bang (IsNA (GetField __uid_3 (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 0)))) (False)) 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.147ms, total 7.457s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.033ms, total 7.457s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.137ms, total 7.458s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.360ms, total 7.458s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.050ms, total 7.458s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.184ms, total 7.459s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 1.627ms, total 7.459s, tagged coverage 56.0 2020-04-02 15:09:29 root: INFO: optimize Lowerer, initial IR: after: IR size 6: (Coalesce (ApplyUnaryPrimOp Bang (IsNA (GetField __uid_3 (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 0)))) (False)) 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- Verify : 0.022ms, total 7.459s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- LoweringTransformation : 0.026ms, total 7.459s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- Verify : 0.018ms, total 7.459s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR : 0.289ms, total 7.459s, tagged coverage 22.4 2020-04-02 15:09:29 root: INFO: optimize InlineApplyIR, post Lowering: before: IR size 6: (Coalesce (ApplyUnaryPrimOp Bang (IsNA (GetField __uid_3 (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 0)))) (False)) 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.082ms, total 7.460s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.027ms, total 7.460s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.100ms, total 7.460s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.382ms, total 7.461s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.071ms, total 7.461s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.175ms, total 7.461s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 1.459ms, total 7.461s, tagged coverage 57.4 2020-04-02 15:09:29 root: INFO: optimize InlineApplyIR, post Lowering: after: IR size 6: (Coalesce (ApplyUnaryPrimOp Bang (IsNA (GetField __uid_3 (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 0)))) (False)) 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- Verify : 0.021ms, total 7.461s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- LoweringTransformation : 0.024ms, total 7.462s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- Verify : 0.035ms, total 7.462s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs : 0.332ms, total 7.462s, tagged coverage 24.1 2020-04-02 15:09:29 root: INFO: optimize LowerArrayAggsToRunAggs, post Lowering: before: IR size 6: (Coalesce (ApplyUnaryPrimOp Bang (IsNA (GetField __uid_3 (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 0)))) (False)) 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.079ms, total 7.462s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.025ms, total 7.462s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.083ms, total 7.462s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.288ms, total 7.463s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.199ms, total 7.463s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.216ms, total 7.463s 2020-04-02 15:09:29 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 1.484ms, total 7.464s, tagged coverage 60.0 2020-04-02 15:09:29 root: INFO: optimize LowerArrayAggsToRunAggs, post Lowering: after: IR size 6: (Coalesce (ApplyUnaryPrimOp Bang (IsNA (GetField __uid_3 (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 0)))) (False)) 2020-04-02 15:09:29 root: INFO: instruction count: 3: is/hail/codegen/generated/C12. 2020-04-02 15:09:29 root: INFO: instruction count: 65: is/hail/codegen/generated/C12.apply 2020-04-02 15:09:29 root: INFO: instruction count: 22: is/hail/codegen/generated/C12.apply 2020-04-02 15:09:29 root: INFO: instruction count: 14: is/hail/codegen/generated/C12.setPartitionIndex 2020-04-02 15:09:29 root: INFO: instruction count: 6: is/hail/codegen/generated/C12.addPartitionRegion 2020-04-02 15:09:29 root: INFO: encoder cache miss (0 hits, 3 misses, 0.000) 2020-04-02 15:09:29 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeEncode_13. 2020-04-02 15:09:29 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_13.apply 2020-04-02 15:09:29 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_13.__m1ENCODE_o_tuple_of_o_array_of_o_tuple_of_o_stringENDEND_TO_o_struct_of_o_array_of_o_struct_of_o_binaryENDEND 2020-04-02 15:09:29 root: INFO: instruction count: 21: is/hail/codegen/generated/C_etypeEncode_13.__m2write_fields_group_0 2020-04-02 15:09:29 root: INFO: instruction count: 106: is/hail/codegen/generated/C_etypeEncode_13.__m3ENCODE_o_array_of_o_tuple_of_o_binaryEND_TO_o_array_of_o_struct_of_o_binaryEND 2020-04-02 15:09:29 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_13.__m4ENCODE_o_tuple_of_o_binaryEND_TO_o_struct_of_o_binaryEND 2020-04-02 15:09:29 root: INFO: instruction count: 21: is/hail/codegen/generated/C_etypeEncode_13.__m5write_fields_group_0 2020-04-02 15:09:29 root: INFO: instruction count: 16: is/hail/codegen/generated/C_etypeEncode_13.__m6ENCODE_o_binary_TO_o_binary 2020-04-02 15:09:29 root: INFO: decoder cache miss (2 hits, 8 misses, 0.200 2020-04-02 15:09:29 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeDecode_14. 2020-04-02 15:09:29 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeDecode_14.apply 2020-04-02 15:09:29 root: INFO: instruction count: 31: is/hail/codegen/generated/C_etypeDecode_14.__m1DECODE_o_struct_of_o_array_of_o_struct_of_o_binaryENDEND_TO_o_tuple_of_o_array_of_o_tuple_of_o_stringENDEND 2020-04-02 15:09:29 root: INFO: instruction count: 28: is/hail/codegen/generated/C_etypeDecode_14.__m2read_fields_group_0 2020-04-02 15:09:29 root: INFO: instruction count: 100: is/hail/codegen/generated/C_etypeDecode_14.__m3INPLACE_DECODE_o_array_of_o_struct_of_o_binaryEND_TO_o_array_of_o_tuple_of_o_binaryEND 2020-04-02 15:09:29 root: INFO: instruction count: 25: is/hail/codegen/generated/C_etypeDecode_14.__m4INPLACE_DECODE_o_struct_of_o_binaryEND_TO_o_tuple_of_o_binaryEND 2020-04-02 15:09:29 root: INFO: instruction count: 28: is/hail/codegen/generated/C_etypeDecode_14.__m5read_fields_group_0 2020-04-02 15:09:29 root: INFO: instruction count: 29: is/hail/codegen/generated/C_etypeDecode_14.__m6INPLACE_DECODE_o_binary_TO_o_binary 2020-04-02 15:09:29 MemoryStore: INFO: Block broadcast_6 stored as values in memory (estimated size 3.5 MB, free 21.6 GB) 2020-04-02 15:09:30 MemoryStore: INFO: Block broadcast_6_piece0 stored as bytes in memory (estimated size 3.5 MB, free 21.6 GB) 2020-04-02 15:09:30 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-m.c.maclab-ukbb.internal:41033 (size: 3.5 MB, free: 21.7 GB) 2020-04-02 15:09:30 SparkContext: INFO: Created broadcast 6 from broadcast at SparkBackend.scala:31 2020-04-02 15:09:30 root: INFO: optimize Lowerer, initial IR: before: IR size 5: (MakeStruct (interval (GetField interval (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1)))) 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.220ms, total 7.891s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.044ms, total 7.891s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.090ms, total 7.891s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.332ms, total 7.892s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.050ms, total 7.892s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.468ms, total 7.892s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 2.091ms, total 7.892s, tagged coverage 57.6 2020-04-02 15:09:30 root: INFO: optimize Lowerer, initial IR: after: IR size 5: (MakeStruct (interval (GetField interval (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1)))) 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- Verify : 0.020ms, total 7.893s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- LoweringTransformation : 0.070ms, total 7.893s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR -- Verify : 0.017ms, total 7.893s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- InlineApplyIR : 0.335ms, total 7.893s, tagged coverage 32.1 2020-04-02 15:09:30 root: INFO: optimize InlineApplyIR, post Lowering: before: IR size 5: (MakeStruct (interval (GetField interval (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1)))) 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.080ms, total 7.894s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.030ms, total 7.894s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.076ms, total 7.894s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.309ms, total 7.894s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.044ms, total 7.895s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.201ms, total 7.895s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 1.335ms, total 7.895s, tagged coverage 55.4 2020-04-02 15:09:30 root: INFO: optimize InlineApplyIR, post Lowering: after: IR size 5: (MakeStruct (interval (GetField interval (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1)))) 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- Verify : 0.018ms, total 7.896s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- LoweringTransformation : 0.020ms, total 7.896s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs -- Verify : 0.016ms, total 7.896s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- LowerArrayAggsToRunAggs : 0.275ms, total 7.896s, tagged coverage 19.4 2020-04-02 15:09:30 root: INFO: optimize LowerArrayAggsToRunAggs, post Lowering: before: IR size 5: (MakeStruct (interval (GetField interval (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1)))) 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- FoldConstants : 0.062ms, total 7.896s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ExtractIntervalFilters : 0.027ms, total 7.896s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- Simplify : 0.072ms, total 7.896s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardLets : 0.403ms, total 7.897s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- ForwardRelationalLets : 0.063ms, total 7.897s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize -- PruneDeadFields : 0.296ms, total 7.898s 2020-04-02 15:09:30 root: INFO: Timer: Time taken for InterpretNonCompilable -- LoweringTransformation -- Optimize : 1.719ms, total 7.898s, tagged coverage 53.7 2020-04-02 15:09:30 root: INFO: optimize LowerArrayAggsToRunAggs, post Lowering: after: IR size 5: (MakeStruct (interval (GetField interval (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In PCStruct{interval:PCInterval[PCLocus(GRCh38)],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:PCArray[+PCStruct{n_defined:PInt64,total:PInt64,dp_sum:PInt64,mean_dp:PFloat64,pct_gt_10x:PFloat64,pct_gt_20x:PFloat64,pct_dp_defined:PFloat32}],__uid_3:+PCStruct{pct_samples_20x:PFloat64}} 1)))) 2020-04-02 15:09:30 root: INFO: instruction count: 3: is/hail/codegen/generated/C15. 2020-04-02 15:09:30 root: INFO: instruction count: 123: is/hail/codegen/generated/C15.apply 2020-04-02 15:09:30 root: INFO: instruction count: 22: is/hail/codegen/generated/C15.apply 2020-04-02 15:09:30 root: INFO: instruction count: 10: is/hail/codegen/generated/C15.__m4addIRIntermediate 2020-04-02 15:09:30 root: INFO: instruction count: 7: is/hail/codegen/generated/C15.__m5addIRIntermediate 2020-04-02 15:09:30 root: INFO: instruction count: 14: is/hail/codegen/generated/C15.setPartitionIndex 2020-04-02 15:09:30 root: INFO: instruction count: 6: is/hail/codegen/generated/C15.addPartitionRegion 2020-04-02 15:10:12 root: INFO: encoder cache miss (0 hits, 4 misses, 0.000) 2020-04-02 15:10:12 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeEncode_16. 2020-04-02 15:10:12 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_16.apply 2020-04-02 15:10:12 root: INFO: instruction count: 15: is/hail/codegen/generated/C_etypeEncode_16.__m1ENCODE_o_tuple_of_o_interval_of_o_locusANDo_array_of_r_tuple_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32ENDEND_TO_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND 2020-04-02 15:10:12 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeEncode_16.__m2missingbits_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 14: is/hail/codegen/generated/C_etypeEncode_16.__m3missingbits_group_1 2020-04-02 15:10:12 root: INFO: instruction count: 19: is/hail/codegen/generated/C_etypeEncode_16.__m4write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_16.__m5ENCODE_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND_TO_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND 2020-04-02 15:10:12 root: INFO: instruction count: 65: is/hail/codegen/generated/C_etypeEncode_16.__m6write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_16.__m7ENCODE_o_tuple_of_r_binaryANDr_int32END_TO_o_struct_of_r_binaryANDr_int32END 2020-04-02 15:10:12 root: INFO: instruction count: 33: is/hail/codegen/generated/C_etypeEncode_16.__m8write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 16: is/hail/codegen/generated/C_etypeEncode_16.__m9ENCODE_r_binary_TO_r_binary 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_16.__m10ENCODE_r_int32_TO_r_int32 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_16.__m11ENCODE_r_bool_TO_r_bool 2020-04-02 15:10:12 root: INFO: encoder cache miss (0 hits, 5 misses, 0.000) 2020-04-02 15:10:12 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeEncode_17. 2020-04-02 15:10:12 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_17.apply 2020-04-02 15:10:12 root: INFO: instruction count: 15: is/hail/codegen/generated/C_etypeEncode_17.__m1ENCODE_o_tuple_of_o_interval_of_o_locusANDo_array_of_r_tuple_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32ENDEND_TO_o_struct_of_o_array_of_r_struct_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32ENDEND 2020-04-02 15:10:12 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeEncode_17.__m2missingbits_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 14: is/hail/codegen/generated/C_etypeEncode_17.__m3missingbits_group_1 2020-04-02 15:10:12 root: INFO: instruction count: 21: is/hail/codegen/generated/C_etypeEncode_17.__m4write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 48: is/hail/codegen/generated/C_etypeEncode_17.__m5ENCODE_o_array_of_r_tuple_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32END_TO_o_array_of_r_struct_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32END 2020-04-02 15:10:12 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_17.__m6ENCODE_r_tuple_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32END_TO_r_struct_of_o_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ANDo_float32END 2020-04-02 15:10:12 root: INFO: instruction count: 129: is/hail/codegen/generated/C_etypeEncode_17.__m7write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_17.__m8ENCODE_o_int64_TO_o_int64 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_17.__m9ENCODE_o_float64_TO_o_float64 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_17.__m10ENCODE_o_float32_TO_o_float32 2020-04-02 15:10:12 root: INFO: encoder cache miss (0 hits, 6 misses, 0.000) 2020-04-02 15:10:12 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeEncode_18. 2020-04-02 15:10:12 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_18.apply 2020-04-02 15:10:12 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_18.__m1ENCODE_o_tuple_of_r_int64ANDr_array_of_r_tuple_of_o_tuple_of_o_interval_of_o_locusENDANDr_int64ANDr_tuple_of_o_int64ENDENDEND_TO_o_struct_of_r_int64ANDr_array_of_r_struct_of_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDENDEND 2020-04-02 15:10:12 root: INFO: instruction count: 33: is/hail/codegen/generated/C_etypeEncode_18.__m2write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_18.__m3ENCODE_r_int64_TO_r_int64 2020-04-02 15:10:12 root: INFO: instruction count: 48: is/hail/codegen/generated/C_etypeEncode_18.__m4ENCODE_r_array_of_r_tuple_of_o_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_tuple_of_o_int64ENDEND_TO_r_array_of_r_struct_of_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDEND 2020-04-02 15:10:12 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_18.__m5ENCODE_r_tuple_of_o_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_tuple_of_o_int64ENDEND_TO_r_struct_of_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDEND 2020-04-02 15:10:12 root: INFO: instruction count: 47: is/hail/codegen/generated/C_etypeEncode_18.__m6write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_18.__m7ENCODE_o_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND_TO_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND 2020-04-02 15:10:12 root: INFO: instruction count: 19: is/hail/codegen/generated/C_etypeEncode_18.__m8write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_18.__m9ENCODE_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND_TO_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND 2020-04-02 15:10:12 root: INFO: instruction count: 65: is/hail/codegen/generated/C_etypeEncode_18.__m10write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_18.__m11ENCODE_o_tuple_of_r_binaryANDr_int32END_TO_o_struct_of_r_binaryANDr_int32END 2020-04-02 15:10:12 root: INFO: instruction count: 33: is/hail/codegen/generated/C_etypeEncode_18.__m12write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 16: is/hail/codegen/generated/C_etypeEncode_18.__m13ENCODE_r_binary_TO_r_binary 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_18.__m14ENCODE_r_int32_TO_r_int32 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_18.__m15ENCODE_r_bool_TO_r_bool 2020-04-02 15:10:12 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_18.__m16ENCODE_r_tuple_of_o_int64END_TO_r_struct_of_o_int64END 2020-04-02 15:10:12 root: INFO: instruction count: 21: is/hail/codegen/generated/C_etypeEncode_18.__m17write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_18.__m18ENCODE_o_int64_TO_o_int64 2020-04-02 15:10:12 root: INFO: encoder cache miss (0 hits, 7 misses, 0.000) 2020-04-02 15:10:12 root: INFO: instruction count: 3: is/hail/codegen/generated/C_etypeEncode_19. 2020-04-02 15:10:12 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_19.apply 2020-04-02 15:10:12 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_19.__m1ENCODE_o_tuple_of_r_array_of_r_tuple_of_r_int64ANDr_int64ANDo_tuple_of_o_interval_of_o_locusENDANDr_int64ANDr_tuple_of_o_int64ENDENDEND_TO_o_struct_of_r_array_of_r_struct_of_r_int64ANDr_int64ANDo_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDENDEND 2020-04-02 15:10:12 root: INFO: instruction count: 18: is/hail/codegen/generated/C_etypeEncode_19.__m2write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 48: is/hail/codegen/generated/C_etypeEncode_19.__m3ENCODE_r_array_of_r_tuple_of_r_int64ANDr_int64ANDo_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_tuple_of_o_int64ENDEND_TO_r_array_of_r_struct_of_r_int64ANDr_int64ANDo_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDEND 2020-04-02 15:10:12 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_19.__m4ENCODE_r_tuple_of_r_int64ANDr_int64ANDo_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_tuple_of_o_int64ENDEND_TO_r_struct_of_r_int64ANDr_int64ANDo_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDENDANDr_int64ANDr_struct_of_o_int64ENDEND 2020-04-02 15:10:12 root: INFO: instruction count: 77: is/hail/codegen/generated/C_etypeEncode_19.__m5write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_19.__m6ENCODE_r_int64_TO_r_int64 2020-04-02 15:10:12 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_19.__m7ENCODE_o_tuple_of_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND_TO_o_struct_of_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolENDEND 2020-04-02 15:10:12 root: INFO: instruction count: 19: is/hail/codegen/generated/C_etypeEncode_19.__m8write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_19.__m9ENCODE_o_tuple_of_o_tuple_of_r_binaryANDr_int32ENDANDo_tuple_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND_TO_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_struct_of_r_binaryANDr_int32ENDANDr_boolANDr_boolEND 2020-04-02 15:10:12 root: INFO: instruction count: 65: is/hail/codegen/generated/C_etypeEncode_19.__m10write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 7: is/hail/codegen/generated/C_etypeEncode_19.__m11ENCODE_o_tuple_of_r_binaryANDr_int32END_TO_o_struct_of_r_binaryANDr_int32END 2020-04-02 15:10:12 root: INFO: instruction count: 33: is/hail/codegen/generated/C_etypeEncode_19.__m12write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 16: is/hail/codegen/generated/C_etypeEncode_19.__m13ENCODE_r_binary_TO_r_binary 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_19.__m14ENCODE_r_int32_TO_r_int32 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_19.__m15ENCODE_r_bool_TO_r_bool 2020-04-02 15:10:12 root: INFO: instruction count: 17: is/hail/codegen/generated/C_etypeEncode_19.__m16ENCODE_r_tuple_of_o_int64END_TO_r_struct_of_o_int64END 2020-04-02 15:10:12 root: INFO: instruction count: 21: is/hail/codegen/generated/C_etypeEncode_19.__m17write_fields_group_0 2020-04-02 15:10:12 root: INFO: instruction count: 6: is/hail/codegen/generated/C_etypeEncode_19.__m18ENCODE_o_int64_TO_o_int64 2020-04-02 15:10:12 SparkContext: INFO: Starting job: collect at ContextRDD.scala:223 2020-04-02 15:10:12 DAGScheduler: INFO: Got job 0 (collect at ContextRDD.scala:223) with 30000 output partitions 2020-04-02 15:10:12 DAGScheduler: INFO: Final stage: ResultStage 0 (collect at ContextRDD.scala:223) 2020-04-02 15:10:12 DAGScheduler: INFO: Parents of final stage: List() 2020-04-02 15:10:12 DAGScheduler: INFO: Missing parents: List() 2020-04-02 15:10:12 DAGScheduler: INFO: Submitting ResultStage 0 (MapPartitionsRDD[15] at mapPartitions at ContextRDD.scala:217), which has no missing parents 2020-04-02 15:10:13 MemoryStore: INFO: Block broadcast_7 stored as values in memory (estimated size 1080.6 KB, free 21.6 GB) 2020-04-02 15:10:13 MemoryStore: INFO: Block broadcast_7_piece0 stored as bytes in memory (estimated size 723.4 KB, free 21.6 GB) 2020-04-02 15:10:13 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-m.c.maclab-ukbb.internal:41033 (size: 723.4 KB, free: 21.7 GB) 2020-04-02 15:10:13 SparkContext: INFO: Created broadcast 7 from broadcast at DAGScheduler.scala:1163 2020-04-02 15:10:13 DAGScheduler: INFO: Submitting 30000 missing tasks from ResultStage 0 (MapPartitionsRDD[15] at mapPartitions at ContextRDD.scala:217) (first 15 tasks are for partitions Vector(0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)) 2020-04-02 15:10:13 YarnScheduler: INFO: Adding task set 0.0 with 30000 tasks 2020-04-02 15:10:13 FairSchedulableBuilder: INFO: Added task set TaskSet_0.0 tasks to pool default 2020-04-02 15:10:13 TaskSetManager: INFO: Starting task 0.0 in stage 0.0 (TID 0, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:13 TaskSetManager: INFO: Starting task 1.0 in stage 0.0 (TID 1, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:13 TaskSetManager: INFO: Starting task 2.0 in stage 0.0 (TID 2, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 2, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:13 TaskSetManager: INFO: Starting task 3.0 in stage 0.0 (TID 3, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:13 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-62.c.maclab-ukbb.internal:44129 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:13 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-29.c.maclab-ukbb.internal:46411 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:14 ExecutorAllocationManager: INFO: Requesting 1 new executor because tasks are backlogged (new desired total will be 3) 2020-04-02 15:10:14 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-29.c.maclab-ukbb.internal:46411 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:14 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-62.c.maclab-ukbb.internal:44129 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:15 ExecutorAllocationManager: INFO: Requesting 2 new executors because tasks are backlogged (new desired total will be 5) 2020-04-02 15:10:16 ExecutorAllocationManager: INFO: Requesting 4 new executors because tasks are backlogged (new desired total will be 9) 2020-04-02 15:10:16 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-62.c.maclab-ukbb.internal:44129 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:17 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-29.c.maclab-ukbb.internal:46411 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:17 ExecutorAllocationManager: INFO: Requesting 8 new executors because tasks are backlogged (new desired total will be 17) 2020-04-02 15:10:18 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-62.c.maclab-ukbb.internal:44129 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:18 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-29.c.maclab-ukbb.internal:46411 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:18 ExecutorAllocationManager: INFO: Requesting 16 new executors because tasks are backlogged (new desired total will be 33) 2020-04-02 15:10:18 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-62.c.maclab-ukbb.internal:44129 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:18 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-29.c.maclab-ukbb.internal:46411 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:19 TaskSetManager: INFO: Starting task 4.0 in stage 0.0 (TID 4, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 4, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:19 TaskSetManager: WARN: Lost task 0.0 in stage 0.0 (TID 0, jg1-w-62.c.maclab-ukbb.internal, executor 2): is.hail.utils.HailException: cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64} at is.hail.utils.ErrorHandling$class.fatal(ErrorHandling.scala:9) at is.hail.utils.package$.fatal(package.scala:74) at is.hail.annotations.RegionValueBuilder.setMissing(RegionValueBuilder.scala:210) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:953) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:946) at is.hail.utils.FlipbookIterator$$anon$5.(FlipbookIterator.scala:176) at is.hail.utils.FlipbookIterator.map(FlipbookIterator.scala:174) at is.hail.utils.FlipbookIterator.map(FlipbookIterator.scala:145) at is.hail.rvd.RVD$$anonfun$26.apply(RVD.scala:946) at is.hail.rvd.RVD$$anonfun$26.apply(RVD.scala:942) at is.hail.rvd.KeyedRVD$$anonfun$orderedLeftJoinDistinct$1.apply(KeyedRVD.scala:147) at is.hail.rvd.KeyedRVD$$anonfun$orderedLeftJoinDistinct$1.apply(KeyedRVD.scala:146) at is.hail.sparkextras.ContextRDD$$anonfun$czipPartitions$1$$anonfun$apply$22.apply(ContextRDD.scala:340) at is.hail.sparkextras.ContextRDD$$anonfun$czipPartitions$1$$anonfun$apply$22.apply(ContextRDD.scala:340) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16$$anonfun$apply$17.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16$$anonfun$apply$17.apply(ContextRDD.scala:281) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:462) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:106) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:102) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:102) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:101) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:101) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:99) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:99) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:97) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:97) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:95) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$.writeSplitRegion(RichContextRDDRegionValue.scala:95) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:901) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:899) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310) at scala.collection.AbstractIterator.to(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289) at scala.collection.AbstractIterator.toArray(Iterator.scala:1334) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2020-04-02 15:10:19 ExecutorAllocationManager: INFO: Requesting 32 new executors because tasks are backlogged (new desired total will be 65) 2020-04-02 15:10:20 TaskSetManager: INFO: Starting task 0.1 in stage 0.0 (TID 5, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:20 TaskSetManager: INFO: Lost task 3.0 in stage 0.0 (TID 3) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1] 2020-04-02 15:10:20 TaskSetManager: INFO: Starting task 3.1 in stage 0.0 (TID 6, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:20 TaskSetManager: INFO: Finished task 2.0 in stage 0.0 (TID 2) in 6753 ms on jg1-w-62.c.maclab-ukbb.internal (executor 2) (1/30000) 2020-04-02 15:10:20 ExecutorAllocationManager: INFO: Requesting 64 new executors because tasks are backlogged (new desired total will be 129) 2020-04-02 15:10:20 TaskSetManager: INFO: Starting task 5.0 in stage 0.0 (TID 7, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 5, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:20 TaskSetManager: INFO: Lost task 1.0 in stage 0.0 (TID 1) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2] 2020-04-02 15:10:20 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.12:42678) with ID 6 2020-04-02 15:10:20 ExecutorAllocationManager: INFO: New executor 6 has registered (new total is 3) 2020-04-02 15:10:20 TaskSetManager: INFO: Starting task 1.1 in stage 0.0 (TID 8, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:20 TaskSetManager: INFO: Starting task 6.0 in stage 0.0 (TID 9, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 6, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:20 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.12:42676) with ID 3 2020-04-02 15:10:20 ExecutorAllocationManager: INFO: New executor 3 has registered (new total is 4) 2020-04-02 15:10:20 TaskSetManager: INFO: Starting task 7.0 in stage 0.0 (TID 10, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 7, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:20 TaskSetManager: INFO: Starting task 8.0 in stage 0.0 (TID 11, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 8, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:21 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-20.c.maclab-ukbb.internal:44655 with 2.7 GB RAM, BlockManagerId(3, jg1-w-20.c.maclab-ukbb.internal, 44655, None) 2020-04-02 15:10:21 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-20.c.maclab-ukbb.internal:34929 with 2.7 GB RAM, BlockManagerId(6, jg1-w-20.c.maclab-ukbb.internal, 34929, None) 2020-04-02 15:10:21 ExecutorAllocationManager: INFO: Requesting 128 new executors because tasks are backlogged (new desired total will be 257) 2020-04-02 15:10:21 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-20.c.maclab-ukbb.internal:34929 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:21 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-20.c.maclab-ukbb.internal:44655 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:22 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.59:36216) with ID 7 2020-04-02 15:10:22 ExecutorAllocationManager: INFO: New executor 7 has registered (new total is 5) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 9.0 in stage 0.0 (TID 12, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 9, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 10.0 in stage 0.0 (TID 13, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 10, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:22 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.59:36218) with ID 4 2020-04-02 15:10:22 ExecutorAllocationManager: INFO: New executor 4 has registered (new total is 6) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 11.0 in stage 0.0 (TID 14, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 11, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 12.0 in stage 0.0 (TID 15, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 12, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 13.0 in stage 0.0 (TID 16, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 13, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:22 TaskSetManager: INFO: Lost task 0.1 in stage 0.0 (TID 5) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 3] 2020-04-02 15:10:22 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-65.c.maclab-ukbb.internal:46333 with 2.7 GB RAM, BlockManagerId(4, jg1-w-65.c.maclab-ukbb.internal, 46333, None) 2020-04-02 15:10:22 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-65.c.maclab-ukbb.internal:43659 with 2.7 GB RAM, BlockManagerId(7, jg1-w-65.c.maclab-ukbb.internal, 43659, None) 2020-04-02 15:10:22 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.74:49224) with ID 5 2020-04-02 15:10:22 ExecutorAllocationManager: INFO: New executor 5 has registered (new total is 7) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 0.2 in stage 0.0 (TID 17, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 14.0 in stage 0.0 (TID 18, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 14, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:22 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.74:49222) with ID 10 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 15.0 in stage 0.0 (TID 19, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 15, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:22 ExecutorAllocationManager: INFO: New executor 10 has registered (new total is 8) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 16.0 in stage 0.0 (TID 20, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 16, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:22 ExecutorAllocationManager: INFO: Requesting 256 new executors because tasks are backlogged (new desired total will be 513) 2020-04-02 15:10:22 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-78.c.maclab-ukbb.internal:46397 with 2.7 GB RAM, BlockManagerId(5, jg1-w-78.c.maclab-ukbb.internal, 46397, None) 2020-04-02 15:10:22 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-78.c.maclab-ukbb.internal:33983 with 2.7 GB RAM, BlockManagerId(10, jg1-w-78.c.maclab-ukbb.internal, 33983, None) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 17.0 in stage 0.0 (TID 21, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 17, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:22 TaskSetManager: INFO: Finished task 4.0 in stage 0.0 (TID 4) in 3531 ms on jg1-w-62.c.maclab-ukbb.internal (executor 2) (2/30000) 2020-04-02 15:10:22 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-20.c.maclab-ukbb.internal:34929 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:22 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.14:54904) with ID 11 2020-04-02 15:10:22 ExecutorAllocationManager: INFO: New executor 11 has registered (new total is 9) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 18.0 in stage 0.0 (TID 22, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 18, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 19.0 in stage 0.0 (TID 23, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:22 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.14:54902) with ID 8 2020-04-02 15:10:22 ExecutorAllocationManager: INFO: New executor 8 has registered (new total is 10) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 20.0 in stage 0.0 (TID 24, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:22 TaskSetManager: INFO: Starting task 21.0 in stage 0.0 (TID 25, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 21, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-65.c.maclab-ukbb.internal:46333 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:23 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-22.c.maclab-ukbb.internal:41859 with 2.7 GB RAM, BlockManagerId(11, jg1-w-22.c.maclab-ukbb.internal, 41859, None) 2020-04-02 15:10:23 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-22.c.maclab-ukbb.internal:35925 with 2.7 GB RAM, BlockManagerId(8, jg1-w-22.c.maclab-ukbb.internal, 35925, None) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 22.0 in stage 0.0 (TID 26, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 22, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 TaskSetManager: INFO: Lost task 3.1 in stage 0.0 (TID 6) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 4] 2020-04-02 15:10:23 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-65.c.maclab-ukbb.internal:43659 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:23 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.31:35484) with ID 12 2020-04-02 15:10:23 ExecutorAllocationManager: INFO: New executor 12 has registered (new total is 11) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 3.2 in stage 0.0 (TID 27, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 23.0 in stage 0.0 (TID 28, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 23, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-20.c.maclab-ukbb.internal:44655 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:23 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.31:35482) with ID 9 2020-04-02 15:10:23 ExecutorAllocationManager: INFO: New executor 9 has registered (new total is 12) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 24.0 in stage 0.0 (TID 29, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 24, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 25.0 in stage 0.0 (TID 30, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 25, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.56:54162) with ID 60 2020-04-02 15:10:23 ExecutorAllocationManager: INFO: New executor 60 has registered (new total is 13) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 26.0 in stage 0.0 (TID 31, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 26, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 27.0 in stage 0.0 (TID 32, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.199:60228) with ID 79 2020-04-02 15:10:23 ExecutorAllocationManager: INFO: New executor 79 has registered (new total is 14) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 28.0 in stage 0.0 (TID 33, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 28, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 29.0 in stage 0.0 (TID 34, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 29, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-37.c.maclab-ukbb.internal:44391 with 2.7 GB RAM, BlockManagerId(12, jg1-w-37.c.maclab-ukbb.internal, 44391, None) 2020-04-02 15:10:23 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.20:45784) with ID 58 2020-04-02 15:10:23 ExecutorAllocationManager: INFO: New executor 58 has registered (new total is 15) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 30.0 in stage 0.0 (TID 35, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 30, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 31.0 in stage 0.0 (TID 36, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-78.c.maclab-ukbb.internal:46397 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:23 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-78.c.maclab-ukbb.internal:33983 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:23 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-62.c.maclab-ukbb.internal:35195 with 2.7 GB RAM, BlockManagerId(60, jg1-w-62.c.maclab-ukbb.internal, 35195, None) 2020-04-02 15:10:23 ExecutorAllocationManager: INFO: Requesting 512 new executors because tasks are backlogged (new desired total will be 1025) 2020-04-02 15:10:23 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-37.c.maclab-ukbb.internal:44731 with 2.7 GB RAM, BlockManagerId(9, jg1-w-37.c.maclab-ukbb.internal, 44731, None) 2020-04-02 15:10:23 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-2.c.maclab-ukbb.internal:36149 with 2.7 GB RAM, BlockManagerId(79, jg1-w-2.c.maclab-ukbb.internal, 36149, None) 2020-04-02 15:10:23 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-29.c.maclab-ukbb.internal:44999 with 2.7 GB RAM, BlockManagerId(58, jg1-w-29.c.maclab-ukbb.internal, 44999, None) 2020-04-02 15:10:23 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.194:37410) with ID 84 2020-04-02 15:10:23 ExecutorAllocationManager: INFO: New executor 84 has registered (new total is 16) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 32.0 in stage 0.0 (TID 37, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 32, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 33.0 in stage 0.0 (TID 38, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 33, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-22.c.maclab-ukbb.internal:35925 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:23 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-22.c.maclab-ukbb.internal:41859 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:23 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.78:46590) with ID 111 2020-04-02 15:10:23 ExecutorAllocationManager: INFO: New executor 111 has registered (new total is 17) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 34.0 in stage 0.0 (TID 39, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 34, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 35.0 in stage 0.0 (TID 40, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 35, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-29.c.maclab-ukbb.internal:44999 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:23 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.192:35608) with ID 112 2020-04-02 15:10:23 ExecutorAllocationManager: INFO: New executor 112 has registered (new total is 18) 2020-04-02 15:10:23 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-62.c.maclab-ukbb.internal:35195 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 36.0 in stage 0.0 (TID 41, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 36, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 TaskSetManager: INFO: Starting task 37.0 in stage 0.0 (TID 42, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 37, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:23 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-2.c.maclab-ukbb.internal:36149 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:23 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.51:33902) with ID 22 2020-04-02 15:10:23 ExecutorAllocationManager: INFO: New executor 22 has registered (new total is 19) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 38.0 in stage 0.0 (TID 43, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 38, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 39.0 in stage 0.0 (TID 44, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.195:39102) with ID 76 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 76 has registered (new total is 20) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 40.0 in stage 0.0 (TID 45, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 40, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 41.0 in stage 0.0 (TID 46, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-3.c.maclab-ukbb.internal:37597 with 2.7 GB RAM, BlockManagerId(84, jg1-w-3.c.maclab-ukbb.internal, 37597, None) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-81.c.maclab-ukbb.internal:40683 with 2.7 GB RAM, BlockManagerId(111, jg1-w-81.c.maclab-ukbb.internal, 40683, None) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.51:33904) with ID 17 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 17 has registered (new total is 21) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 42.0 in stage 0.0 (TID 47, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 42, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 43.0 in stage 0.0 (TID 48, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 43, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.76:59072) with ID 18 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 18 has registered (new total is 22) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 44.0 in stage 0.0 (TID 49, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 44, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 45.0 in stage 0.0 (TID 50, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 45, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.76:59070) with ID 13 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 13 has registered (new total is 23) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 46.0 in stage 0.0 (TID 51, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 46, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 47.0 in stage 0.0 (TID 52, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.17:33652) with ID 16 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 16 has registered (new total is 24) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 48.0 in stage 0.0 (TID 53, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 48, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 49.0 in stage 0.0 (TID 54, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.17:33650) with ID 21 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 21 has registered (new total is 25) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 50.0 in stage 0.0 (TID 55, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 51.0 in stage 0.0 (TID 56, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-0.c.maclab-ukbb.internal:36673 with 2.7 GB RAM, BlockManagerId(112, jg1-w-0.c.maclab-ukbb.internal, 36673, None) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.198:58966) with ID 77 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 77 has registered (new total is 26) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 52.0 in stage 0.0 (TID 57, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 53.0 in stage 0.0 (TID 58, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.190:59908) with ID 80 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 80 has registered (new total is 27) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 54.0 in stage 0.0 (TID 59, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 54, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 55.0 in stage 0.0 (TID 60, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 55, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-5.c.maclab-ukbb.internal:34667 with 2.7 GB RAM, BlockManagerId(76, jg1-w-5.c.maclab-ukbb.internal, 34667, None) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.46:41536) with ID 14 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 14 has registered (new total is 28) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-56.c.maclab-ukbb.internal:43007 with 2.7 GB RAM, BlockManagerId(22, jg1-w-56.c.maclab-ukbb.internal, 43007, None) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 56.0 in stage 0.0 (TID 61, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 57.0 in stage 0.0 (TID 62, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.46:41538) with ID 19 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 19 has registered (new total is 29) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 58.0 in stage 0.0 (TID 63, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 59.0 in stage 0.0 (TID 64, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 59, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-56.c.maclab-ukbb.internal:44123 with 2.7 GB RAM, BlockManagerId(17, jg1-w-56.c.maclab-ukbb.internal, 44123, None) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-37.c.maclab-ukbb.internal:44391 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 60.0 in stage 0.0 (TID 65, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 60, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-26.c.maclab-ukbb.internal:44731 with 2.7 GB RAM, BlockManagerId(16, jg1-w-26.c.maclab-ukbb.internal, 44731, None) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-80.c.maclab-ukbb.internal:43987 with 2.7 GB RAM, BlockManagerId(18, jg1-w-80.c.maclab-ukbb.internal, 43987, None) 2020-04-02 15:10:24 TaskSetManager: INFO: Finished task 5.0 in stage 0.0 (TID 7) in 3547 ms on jg1-w-29.c.maclab-ukbb.internal (executor 1) (3/30000) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-37.c.maclab-ukbb.internal:44731 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-26.c.maclab-ukbb.internal:44151 with 2.7 GB RAM, BlockManagerId(21, jg1-w-26.c.maclab-ukbb.internal, 44151, None) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-80.c.maclab-ukbb.internal:37651 with 2.7 GB RAM, BlockManagerId(13, jg1-w-80.c.maclab-ukbb.internal, 37651, None) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-65.c.maclab-ukbb.internal:46333 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-1.c.maclab-ukbb.internal:35189 with 2.7 GB RAM, BlockManagerId(80, jg1-w-1.c.maclab-ukbb.internal, 35189, None) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-9.c.maclab-ukbb.internal:33835 with 2.7 GB RAM, BlockManagerId(77, jg1-w-9.c.maclab-ukbb.internal, 33835, None) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.200:42700) with ID 78 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-65.c.maclab-ukbb.internal:43659 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 78 has registered (new total is 30) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 61.0 in stage 0.0 (TID 66, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 61, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-0.c.maclab-ukbb.internal:36673 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 62.0 in stage 0.0 (TID 67, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-50.c.maclab-ukbb.internal:39621 with 2.7 GB RAM, BlockManagerId(14, jg1-w-50.c.maclab-ukbb.internal, 39621, None) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-50.c.maclab-ukbb.internal:34241 with 2.7 GB RAM, BlockManagerId(19, jg1-w-50.c.maclab-ukbb.internal, 34241, None) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-3.c.maclab-ukbb.internal:37597 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-81.c.maclab-ukbb.internal:40683 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-7.c.maclab-ukbb.internal:46773 with 2.7 GB RAM, BlockManagerId(78, jg1-w-7.c.maclab-ukbb.internal, 46773, None) 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: Requesting 1024 new executors because tasks are backlogged (new desired total will be 2049) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-5.c.maclab-ukbb.internal:34667 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.195:39106) with ID 119 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 119 has registered (new total is 31) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 63.0 in stage 0.0 (TID 68, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 64.0 in stage 0.0 (TID 69, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-78.c.maclab-ukbb.internal:33983 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.53:40906) with ID 20 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 20 has registered (new total is 32) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 65.0 in stage 0.0 (TID 70, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 65, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 66.0 in stage 0.0 (TID 71, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 66, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.53:40908) with ID 15 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 15 has registered (new total is 33) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 67.0 in stage 0.0 (TID 72, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 67, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 68.0 in stage 0.0 (TID 73, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 68, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-5.c.maclab-ukbb.internal:43941 with 2.7 GB RAM, BlockManagerId(119, jg1-w-5.c.maclab-ukbb.internal, 43941, None) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-1.c.maclab-ukbb.internal:35189 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-2.c.maclab-ukbb.internal:36149 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-9.c.maclab-ukbb.internal:33835 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-56.c.maclab-ukbb.internal:43007 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-78.c.maclab-ukbb.internal:46397 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.194:37418) with ID 125 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 125 has registered (new total is 34) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 69.0 in stage 0.0 (TID 74, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 69, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 70.0 in stage 0.0 (TID 75, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 70, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-56.c.maclab-ukbb.internal:44123 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.190:59914) with ID 123 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 123 has registered (new total is 35) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 71.0 in stage 0.0 (TID 76, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 71, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 72.0 in stage 0.0 (TID 77, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 72, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-60.c.maclab-ukbb.internal:40341 with 2.7 GB RAM, BlockManagerId(20, jg1-w-60.c.maclab-ukbb.internal, 40341, None) 2020-04-02 15:10:24 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-60.c.maclab-ukbb.internal:35569 with 2.7 GB RAM, BlockManagerId(15, jg1-w-60.c.maclab-ukbb.internal, 35569, None) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.15:59928) with ID 42 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 42 has registered (new total is 36) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 73.0 in stage 0.0 (TID 78, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 73, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 74.0 in stage 0.0 (TID 79, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 74, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.15:59930) with ID 23 2020-04-02 15:10:24 ExecutorAllocationManager: INFO: New executor 23 has registered (new total is 37) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 75.0 in stage 0.0 (TID 80, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 TaskSetManager: INFO: Starting task 76.0 in stage 0.0 (TID 81, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 76, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:24 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-7.c.maclab-ukbb.internal:46773 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.198:58970) with ID 121 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 121 has registered (new total is 38) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 77.0 in stage 0.0 (TID 82, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 77, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 78.0 in stage 0.0 (TID 83, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 78, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-26.c.maclab-ukbb.internal:44151 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-26.c.maclab-ukbb.internal:44731 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-62.c.maclab-ukbb.internal:35195 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-80.c.maclab-ukbb.internal:43987 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.200:42704) with ID 120 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 120 has registered (new total is 39) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 79.0 in stage 0.0 (TID 84, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 79, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 80.0 in stage 0.0 (TID 85, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 80, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-50.c.maclab-ukbb.internal:39621 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-80.c.maclab-ukbb.internal:37651 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-50.c.maclab-ukbb.internal:34241 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-25.c.maclab-ukbb.internal:42681 with 2.7 GB RAM, BlockManagerId(42, jg1-w-25.c.maclab-ukbb.internal, 42681, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-25.c.maclab-ukbb.internal:41689 with 2.7 GB RAM, BlockManagerId(23, jg1-w-25.c.maclab-ukbb.internal, 41689, None) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-0.c.maclab-ukbb.internal:36673 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-3.c.maclab-ukbb.internal:39443 with 2.7 GB RAM, BlockManagerId(125, jg1-w-3.c.maclab-ukbb.internal, 39443, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-1.c.maclab-ukbb.internal:42103 with 2.7 GB RAM, BlockManagerId(123, jg1-w-1.c.maclab-ukbb.internal, 42103, None) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-29.c.maclab-ukbb.internal:44999 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-9.c.maclab-ukbb.internal:38919 with 2.7 GB RAM, BlockManagerId(121, jg1-w-9.c.maclab-ukbb.internal, 38919, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-7.c.maclab-ukbb.internal:37755 with 2.7 GB RAM, BlockManagerId(120, jg1-w-7.c.maclab-ukbb.internal, 37755, None) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.19:45464) with ID 29 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 29 has registered (new total is 40) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 81.0 in stage 0.0 (TID 86, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 82.0 in stage 0.0 (TID 87, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 82, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.19:45466) with ID 46 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 46 has registered (new total is 41) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 83.0 in stage 0.0 (TID 88, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 83, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 84.0 in stage 0.0 (TID 89, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 84, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-5.c.maclab-ukbb.internal:43941 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-22.c.maclab-ukbb.internal:35925 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-22.c.maclab-ukbb.internal:41859 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.71:56252) with ID 54 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 54 has registered (new total is 42) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 85.0 in stage 0.0 (TID 90, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 85, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 86.0 in stage 0.0 (TID 91, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 86, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.71:56254) with ID 33 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 33 has registered (new total is 43) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 87.0 in stage 0.0 (TID 92, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 87, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 88.0 in stage 0.0 (TID 93, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 88, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-81.c.maclab-ukbb.internal:40683 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-23.c.maclab-ukbb.internal:45803 with 2.7 GB RAM, BlockManagerId(29, jg1-w-23.c.maclab-ukbb.internal, 45803, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-23.c.maclab-ukbb.internal:44757 with 2.7 GB RAM, BlockManagerId(46, jg1-w-23.c.maclab-ukbb.internal, 44757, None) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.42:53740) with ID 31 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 31 has registered (new total is 44) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 89.0 in stage 0.0 (TID 94, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 89, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 90.0 in stage 0.0 (TID 95, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 90, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.42:53738) with ID 50 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 50 has registered (new total is 45) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 91.0 in stage 0.0 (TID 96, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 92.0 in stage 0.0 (TID 97, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 92, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.16:43530) with ID 27 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 27 has registered (new total is 46) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 93.0 in stage 0.0 (TID 98, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 93, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 94.0 in stage 0.0 (TID 99, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 94, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.16:43532) with ID 47 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: Requesting 2048 new executors because tasks are backlogged (new desired total will be 4097) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 95.0 in stage 0.0 (TID 100, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 95, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 96.0 in stage 0.0 (TID 101, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 96, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 47 has registered (new total is 47) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.44:51092) with ID 43 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 43 has registered (new total is 48) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 97.0 in stage 0.0 (TID 102, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 97, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 98.0 in stage 0.0 (TID 103, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 98, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.44:51090) with ID 24 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 24 has registered (new total is 49) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 99.0 in stage 0.0 (TID 104, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 99, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 100.0 in stage 0.0 (TID 105, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 100, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.32:52246) with ID 28 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 28 has registered (new total is 50) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 101.0 in stage 0.0 (TID 106, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 101, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 102.0 in stage 0.0 (TID 107, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 102, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.32:52244) with ID 48 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 48 has registered (new total is 51) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 103.0 in stage 0.0 (TID 108, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 103, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 104.0 in stage 0.0 (TID 109, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 104, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.75:57748) with ID 45 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 45 has registered (new total is 52) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 105.0 in stage 0.0 (TID 110, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 105, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 106.0 in stage 0.0 (TID 111, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.75:57746) with ID 26 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 26 has registered (new total is 53) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 107.0 in stage 0.0 (TID 112, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 108.0 in stage 0.0 (TID 113, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 108, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-3.c.maclab-ukbb.internal:39443 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-75.c.maclab-ukbb.internal:42129 with 2.7 GB RAM, BlockManagerId(54, jg1-w-75.c.maclab-ukbb.internal, 42129, None) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.86:55730) with ID 25 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 25 has registered (new total is 54) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 109.0 in stage 0.0 (TID 114, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 110.0 in stage 0.0 (TID 115, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 110, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.86:55732) with ID 44 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 44 has registered (new total is 55) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 111.0 in stage 0.0 (TID 116, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 112.0 in stage 0.0 (TID 117, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 112, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-51.c.maclab-ukbb.internal:38039 with 2.7 GB RAM, BlockManagerId(31, jg1-w-51.c.maclab-ukbb.internal, 38039, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-75.c.maclab-ukbb.internal:39423 with 2.7 GB RAM, BlockManagerId(33, jg1-w-75.c.maclab-ukbb.internal, 39423, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-51.c.maclab-ukbb.internal:37797 with 2.7 GB RAM, BlockManagerId(50, jg1-w-51.c.maclab-ukbb.internal, 37797, None) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.57:38014) with ID 70 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 70 has registered (new total is 56) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 113.0 in stage 0.0 (TID 118, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 114.0 in stage 0.0 (TID 119, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 114, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.57:38016) with ID 40 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 40 has registered (new total is 57) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 115.0 in stage 0.0 (TID 120, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 115, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 116.0 in stage 0.0 (TID 121, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 116, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-21.c.maclab-ukbb.internal:45461 with 2.7 GB RAM, BlockManagerId(27, jg1-w-21.c.maclab-ukbb.internal, 45461, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-21.c.maclab-ukbb.internal:34735 with 2.7 GB RAM, BlockManagerId(47, jg1-w-21.c.maclab-ukbb.internal, 34735, None) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-37.c.maclab-ukbb.internal:44391 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-25.c.maclab-ukbb.internal:41689 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-60.c.maclab-ukbb.internal:35569 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 117.0 in stage 0.0 (TID 122, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 117, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-38.c.maclab-ukbb.internal:36883 with 2.7 GB RAM, BlockManagerId(28, jg1-w-38.c.maclab-ukbb.internal, 36883, None) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-25.c.maclab-ukbb.internal:42681 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 TaskSetManager: INFO: Finished task 22.0 in stage 0.0 (TID 26) in 2572 ms on jg1-w-62.c.maclab-ukbb.internal (executor 2) (4/30000) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-37.c.maclab-ukbb.internal:44731 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-38.c.maclab-ukbb.internal:40847 with 2.7 GB RAM, BlockManagerId(48, jg1-w-38.c.maclab-ukbb.internal, 40847, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-79.c.maclab-ukbb.internal:40051 with 2.7 GB RAM, BlockManagerId(45, jg1-w-79.c.maclab-ukbb.internal, 40051, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-79.c.maclab-ukbb.internal:36181 with 2.7 GB RAM, BlockManagerId(26, jg1-w-79.c.maclab-ukbb.internal, 36181, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-49.c.maclab-ukbb.internal:43565 with 2.7 GB RAM, BlockManagerId(43, jg1-w-49.c.maclab-ukbb.internal, 43565, None) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.43:49316) with ID 37 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 37 has registered (new total is 58) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 118.0 in stage 0.0 (TID 123, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 118, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 119.0 in stage 0.0 (TID 124, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 119, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.43:49318) with ID 67 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 67 has registered (new total is 59) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 120.0 in stage 0.0 (TID 125, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 120, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 121.0 in stage 0.0 (TID 126, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-3.c.maclab-ukbb.internal:37597 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-49.c.maclab-ukbb.internal:46157 with 2.7 GB RAM, BlockManagerId(24, jg1-w-49.c.maclab-ukbb.internal, 46157, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-90.c.maclab-ukbb.internal:41817 with 2.7 GB RAM, BlockManagerId(44, jg1-w-90.c.maclab-ukbb.internal, 41817, None) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-90.c.maclab-ukbb.internal:46775 with 2.7 GB RAM, BlockManagerId(25, jg1-w-90.c.maclab-ukbb.internal, 46775, None) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-1.c.maclab-ukbb.internal:42103 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.34:40496) with ID 41 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 41 has registered (new total is 60) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 122.0 in stage 0.0 (TID 127, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 122, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 123.0 in stage 0.0 (TID 128, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 123, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.34:40494) with ID 72 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 72 has registered (new total is 61) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 124.0 in stage 0.0 (TID 129, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 125.0 in stage 0.0 (TID 130, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-64.c.maclab-ukbb.internal:35455 with 2.7 GB RAM, BlockManagerId(70, jg1-w-64.c.maclab-ukbb.internal, 35455, None) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.45:58072) with ID 114 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 114 has registered (new total is 62) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 126.0 in stage 0.0 (TID 131, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 126, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 127.0 in stage 0.0 (TID 132, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 127, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.94:39276) with ID 30 2020-04-02 15:10:25 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-64.c.maclab-ukbb.internal:43817 with 2.7 GB RAM, BlockManagerId(40, jg1-w-64.c.maclab-ukbb.internal, 43817, None) 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 30 has registered (new total is 63) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 128.0 in stage 0.0 (TID 133, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 129.0 in stage 0.0 (TID 134, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 129, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.94:39278) with ID 49 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 49 has registered (new total is 64) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 130.0 in stage 0.0 (TID 135, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 130, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 131.0 in stage 0.0 (TID 136, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 131, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-7.c.maclab-ukbb.internal:37755 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-9.c.maclab-ukbb.internal:38919 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:25 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.45:58074) with ID 35 2020-04-02 15:10:25 ExecutorAllocationManager: INFO: New executor 35 has registered (new total is 65) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 132.0 in stage 0.0 (TID 137, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 132, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:25 TaskSetManager: INFO: Starting task 133.0 in stage 0.0 (TID 138, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 133, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-48.c.maclab-ukbb.internal:34419 with 2.7 GB RAM, BlockManagerId(67, jg1-w-48.c.maclab-ukbb.internal, 34419, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-48.c.maclab-ukbb.internal:35373 with 2.7 GB RAM, BlockManagerId(37, jg1-w-48.c.maclab-ukbb.internal, 35373, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-40.c.maclab-ukbb.internal:42781 with 2.7 GB RAM, BlockManagerId(72, jg1-w-40.c.maclab-ukbb.internal, 42781, None) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-60.c.maclab-ukbb.internal:40341 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-53.c.maclab-ukbb.internal:34513 with 2.7 GB RAM, BlockManagerId(114, jg1-w-53.c.maclab-ukbb.internal, 34513, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-53.c.maclab-ukbb.internal:39353 with 2.7 GB RAM, BlockManagerId(35, jg1-w-53.c.maclab-ukbb.internal, 39353, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-99.c.maclab-ukbb.internal:39857 with 2.7 GB RAM, BlockManagerId(30, jg1-w-99.c.maclab-ukbb.internal, 39857, None) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.23:44240) with ID 69 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 69 has registered (new total is 66) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-40.c.maclab-ukbb.internal:35481 with 2.7 GB RAM, BlockManagerId(41, jg1-w-40.c.maclab-ukbb.internal, 35481, None) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 134.0 in stage 0.0 (TID 139, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 134, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 135.0 in stage 0.0 (TID 140, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 135, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.38:54012) with ID 38 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 38 has registered (new total is 67) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 136.0 in stage 0.0 (TID 141, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 137.0 in stage 0.0 (TID 142, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 137, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.38:54014) with ID 68 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 68 has registered (new total is 68) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 138.0 in stage 0.0 (TID 143, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 138, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 139.0 in stage 0.0 (TID 144, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 139, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.23:44238) with ID 39 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 39 has registered (new total is 69) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 140.0 in stage 0.0 (TID 145, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 141.0 in stage 0.0 (TID 146, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 141, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.7:42498) with ID 51 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 51 has registered (new total is 70) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 142.0 in stage 0.0 (TID 147, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 143.0 in stage 0.0 (TID 148, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.7:42496) with ID 32 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 32 has registered (new total is 71) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 144.0 in stage 0.0 (TID 149, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 144, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 145.0 in stage 0.0 (TID 150, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 145, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-99.c.maclab-ukbb.internal:39871 with 2.7 GB RAM, BlockManagerId(49, jg1-w-99.c.maclab-ukbb.internal, 39871, None) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.197:57360) with ID 155 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 155 has registered (new total is 72) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 146.0 in stage 0.0 (TID 151, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 146, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 147.0 in stage 0.0 (TID 152, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 147, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-20.c.maclab-ukbb.internal:44655 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-5.c.maclab-ukbb.internal:34667 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-23.c.maclab-ukbb.internal:45803 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-80.c.maclab-ukbb.internal:43987 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.28:42730) with ID 36 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 36 has registered (new total is 73) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 148.0 in stage 0.0 (TID 153, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 148, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 149.0 in stage 0.0 (TID 154, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 149, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-20.c.maclab-ukbb.internal:34929 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.28:42728) with ID 66 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 66 has registered (new total is 74) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 150.0 in stage 0.0 (TID 155, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 150, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 151.0 in stage 0.0 (TID 156, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-1.c.maclab-ukbb.internal:35189 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-23.c.maclab-ukbb.internal:44757 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.196:54406) with ID 153 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 153 has registered (new total is 75) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 152.0 in stage 0.0 (TID 157, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 153.0 in stage 0.0 (TID 158, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-28.c.maclab-ukbb.internal:42563 with 2.7 GB RAM, BlockManagerId(69, jg1-w-28.c.maclab-ukbb.internal, 42563, None) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 154.0 in stage 0.0 (TID 159, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Finished task 13.0 in stage 0.0 (TID 16) in 4122 ms on jg1-w-29.c.maclab-ukbb.internal (executor 1) (5/30000) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-45.c.maclab-ukbb.internal:39577 with 2.7 GB RAM, BlockManagerId(38, jg1-w-45.c.maclab-ukbb.internal, 39577, None) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-56.c.maclab-ukbb.internal:44123 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.6:46904) with ID 88 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 88 has registered (new total is 76) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-28.c.maclab-ukbb.internal:38293 with 2.7 GB RAM, BlockManagerId(39, jg1-w-28.c.maclab-ukbb.internal, 38293, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-45.c.maclab-ukbb.internal:32869 with 2.7 GB RAM, BlockManagerId(68, jg1-w-45.c.maclab-ukbb.internal, 32869, None) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 155.0 in stage 0.0 (TID 160, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 155, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 156.0 in stage 0.0 (TID 161, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.6:46906) with ID 55 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 55 has registered (new total is 77) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 157.0 in stage 0.0 (TID 162, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 158.0 in stage 0.0 (TID 163, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-75.c.maclab-ukbb.internal:42129 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-26.c.maclab-ukbb.internal:44151 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-56.c.maclab-ukbb.internal:43007 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-38.c.maclab-ukbb.internal:36883 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.4:54600) with ID 115 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 115 has registered (new total is 78) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 159.0 in stage 0.0 (TID 164, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 159, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 160.0 in stage 0.0 (TID 165, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.4:54602) with ID 34 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 34 has registered (new total is 79) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 161.0 in stage 0.0 (TID 166, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 161, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 162.0 in stage 0.0 (TID 167, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 162, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.73:57020) with ID 92 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 92 has registered (new total is 80) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-8.c.maclab-ukbb.internal:42721 with 2.7 GB RAM, BlockManagerId(155, jg1-w-8.c.maclab-ukbb.internal, 42721, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-12.c.maclab-ukbb.internal:45865 with 2.7 GB RAM, BlockManagerId(51, jg1-w-12.c.maclab-ukbb.internal, 45865, None) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 163.0 in stage 0.0 (TID 168, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 163, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 164.0 in stage 0.0 (TID 169, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-12.c.maclab-ukbb.internal:33639 with 2.7 GB RAM, BlockManagerId(32, jg1-w-12.c.maclab-ukbb.internal, 33639, None) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.73:57022) with ID 61 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 61 has registered (new total is 81) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 165.0 in stage 0.0 (TID 170, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 166.0 in stage 0.0 (TID 171, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-9.c.maclab-ukbb.internal:33835 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-50.c.maclab-ukbb.internal:34241 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-75.c.maclab-ukbb.internal:39423 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-35.c.maclab-ukbb.internal:45861 with 2.7 GB RAM, BlockManagerId(66, jg1-w-35.c.maclab-ukbb.internal, 45861, None) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.193:58578) with ID 146 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 146 has registered (new total is 82) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-38.c.maclab-ukbb.internal:40847 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 167.0 in stage 0.0 (TID 172, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 168.0 in stage 0.0 (TID 173, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 168, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-35.c.maclab-ukbb.internal:33321 with 2.7 GB RAM, BlockManagerId(36, jg1-w-35.c.maclab-ukbb.internal, 33321, None) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-80.c.maclab-ukbb.internal:37651 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.63:34958) with ID 95 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 95 has registered (new total is 83) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-21.c.maclab-ukbb.internal:45461 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-6.c.maclab-ukbb.internal:39431 with 2.7 GB RAM, BlockManagerId(153, jg1-w-6.c.maclab-ukbb.internal, 39431, None) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 169.0 in stage 0.0 (TID 174, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 170.0 in stage 0.0 (TID 175, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.58:57316) with ID 87 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 87 has registered (new total is 84) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-51.c.maclab-ukbb.internal:37797 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 171.0 in stage 0.0 (TID 176, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 171, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 172.0 in stage 0.0 (TID 177, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 172, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.63:34960) with ID 64 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 64 has registered (new total is 85) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 173.0 in stage 0.0 (TID 178, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-26.c.maclab-ukbb.internal:44731 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 174.0 in stage 0.0 (TID 179, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 174, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.58:57314) with ID 52 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 52 has registered (new total is 86) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 175.0 in stage 0.0 (TID 180, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 176.0 in stage 0.0 (TID 181, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 176, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-51.c.maclab-ukbb.internal:38039 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-79.c.maclab-ukbb.internal:40051 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.84:42330) with ID 71 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-21.c.maclab-ukbb.internal:34735 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 177.0 in stage 0.0 (TID 182, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 178.0 in stage 0.0 (TID 183, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 178, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.80:42332) with ID 65 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: Requesting 4096 new executors because tasks are backlogged (new desired total will be 8193) 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 71 has registered (new total is 87) 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 65 has registered (new total is 88) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 179.0 in stage 0.0 (TID 184, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 179, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 180.0 in stage 0.0 (TID 185, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 180, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.82:59978) with ID 63 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 63 has registered (new total is 89) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 181.0 in stage 0.0 (TID 186, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 181, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 182.0 in stage 0.0 (TID 187, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 182, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.80:42330) with ID 96 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 96 has registered (new total is 90) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 183.0 in stage 0.0 (TID 188, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 183, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 184.0 in stage 0.0 (TID 189, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 184, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.82:59980) with ID 93 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 93 has registered (new total is 91) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 185.0 in stage 0.0 (TID 190, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 186.0 in stage 0.0 (TID 191, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.84:42332) with ID 116 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 116 has registered (new total is 92) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 187.0 in stage 0.0 (TID 192, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 188.0 in stage 0.0 (TID 193, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.95:56254) with ID 94 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 94 has registered (new total is 93) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 189.0 in stage 0.0 (TID 194, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 189, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 190.0 in stage 0.0 (TID 195, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 190, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.95:56256) with ID 62 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 62 has registered (new total is 94) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 191.0 in stage 0.0 (TID 196, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 192.0 in stage 0.0 (TID 197, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-16.c.maclab-ukbb.internal:44101 with 2.7 GB RAM, BlockManagerId(115, jg1-w-16.c.maclab-ukbb.internal, 44101, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-13.c.maclab-ukbb.internal:43977 with 2.7 GB RAM, BlockManagerId(55, jg1-w-13.c.maclab-ukbb.internal, 43977, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-16.c.maclab-ukbb.internal:35981 with 2.7 GB RAM, BlockManagerId(34, jg1-w-16.c.maclab-ukbb.internal, 35981, None) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-79.c.maclab-ukbb.internal:36181 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-13.c.maclab-ukbb.internal:45751 with 2.7 GB RAM, BlockManagerId(88, jg1-w-13.c.maclab-ukbb.internal, 45751, None) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-64.c.maclab-ukbb.internal:43817 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.22:54282) with ID 81 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 81 has registered (new total is 95) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 193.0 in stage 0.0 (TID 198, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 194.0 in stage 0.0 (TID 199, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.22:54280) with ID 124 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 124 has registered (new total is 96) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 195.0 in stage 0.0 (TID 200, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 196.0 in stage 0.0 (TID 201, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.90:38582) with ID 74 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 74 has registered (new total is 97) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-76.c.maclab-ukbb.internal:42155 with 2.7 GB RAM, BlockManagerId(61, jg1-w-76.c.maclab-ukbb.internal, 42155, None) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 197.0 in stage 0.0 (TID 202, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 198.0 in stage 0.0 (TID 203, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.90:38580) with ID 118 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 118 has registered (new total is 98) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 199.0 in stage 0.0 (TID 204, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 200.0 in stage 0.0 (TID 205, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 200, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-90.c.maclab-ukbb.internal:41817 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-49.c.maclab-ukbb.internal:43565 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-76.c.maclab-ukbb.internal:41885 with 2.7 GB RAM, BlockManagerId(92, jg1-w-76.c.maclab-ukbb.internal, 41885, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-4.c.maclab-ukbb.internal:45883 with 2.7 GB RAM, BlockManagerId(146, jg1-w-4.c.maclab-ukbb.internal, 45883, None) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.65:55414) with ID 56 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 56 has registered (new total is 99) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-5.c.maclab-ukbb.internal:43941 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 201.0 in stage 0.0 (TID 206, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-64.c.maclab-ukbb.internal:35455 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 202.0 in stage 0.0 (TID 207, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.65:55416) with ID 89 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 89 has registered (new total is 100) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 203.0 in stage 0.0 (TID 208, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 203, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 204.0 in stage 0.0 (TID 209, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 204, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-86.c.maclab-ukbb.internal:42407 with 2.7 GB RAM, BlockManagerId(65, jg1-w-86.c.maclab-ukbb.internal, 42407, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-86.c.maclab-ukbb.internal:39813 with 2.7 GB RAM, BlockManagerId(96, jg1-w-86.c.maclab-ukbb.internal, 39813, None) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-90.c.maclab-ukbb.internal:46775 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-85.c.maclab-ukbb.internal:37977 with 2.7 GB RAM, BlockManagerId(93, jg1-w-85.c.maclab-ukbb.internal, 37977, None) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-7.c.maclab-ukbb.internal:46773 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-89.c.maclab-ukbb.internal:40005 with 2.7 GB RAM, BlockManagerId(116, jg1-w-89.c.maclab-ukbb.internal, 40005, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-68.c.maclab-ukbb.internal:33213 with 2.7 GB RAM, BlockManagerId(64, jg1-w-68.c.maclab-ukbb.internal, 33213, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-89.c.maclab-ukbb.internal:35183 with 2.7 GB RAM, BlockManagerId(71, jg1-w-89.c.maclab-ukbb.internal, 35183, None) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-49.c.maclab-ukbb.internal:46157 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-63.c.maclab-ukbb.internal:37475 with 2.7 GB RAM, BlockManagerId(52, jg1-w-63.c.maclab-ukbb.internal, 37475, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-68.c.maclab-ukbb.internal:43915 with 2.7 GB RAM, BlockManagerId(95, jg1-w-68.c.maclab-ukbb.internal, 43915, None) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-2.c.maclab-ukbb.internal:36149 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.9:49752) with ID 73 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 73 has registered (new total is 101) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-98.c.maclab-ukbb.internal:33635 with 2.7 GB RAM, BlockManagerId(94, jg1-w-98.c.maclab-ukbb.internal, 33635, None) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 205.0 in stage 0.0 (TID 210, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 206.0 in stage 0.0 (TID 211, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.9:49754) with ID 117 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-48.c.maclab-ukbb.internal:35373 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 117 has registered (new total is 102) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 207.0 in stage 0.0 (TID 212, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 207, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 208.0 in stage 0.0 (TID 213, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 208, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-50.c.maclab-ukbb.internal:39621 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-63.c.maclab-ukbb.internal:44371 with 2.7 GB RAM, BlockManagerId(87, jg1-w-63.c.maclab-ukbb.internal, 44371, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-98.c.maclab-ukbb.internal:41397 with 2.7 GB RAM, BlockManagerId(62, jg1-w-98.c.maclab-ukbb.internal, 41397, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-85.c.maclab-ukbb.internal:39213 with 2.7 GB RAM, BlockManagerId(63, jg1-w-85.c.maclab-ukbb.internal, 39213, None) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.193:58582) with ID 173 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 173 has registered (new total is 103) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 209.0 in stage 0.0 (TID 214, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 210.0 in stage 0.0 (TID 215, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 210, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.197:57364) with ID 180 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 180 has registered (new total is 104) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 211.0 in stage 0.0 (TID 216, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 211, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 212.0 in stage 0.0 (TID 217, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 213.0 in stage 0.0 (TID 218, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 213, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Finished task 17.0 in stage 0.0 (TID 21) in 3928 ms on jg1-w-62.c.maclab-ukbb.internal (executor 2) (6/30000) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.25:47908) with ID 57 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 57 has registered (new total is 105) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 214.0 in stage 0.0 (TID 219, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 214, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 215.0 in stage 0.0 (TID 220, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 215, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.25:47910) with ID 90 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 90 has registered (new total is 106) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 216.0 in stage 0.0 (TID 221, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 216, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 217.0 in stage 0.0 (TID 222, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.5:44430) with ID 127 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-48.c.maclab-ukbb.internal:34419 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 127 has registered (new total is 107) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-95.c.maclab-ukbb.internal:35565 with 2.7 GB RAM, BlockManagerId(74, jg1-w-95.c.maclab-ukbb.internal, 35565, None) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 218.0 in stage 0.0 (TID 223, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 219.0 in stage 0.0 (TID 224, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 219, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.5:44432) with ID 83 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 83 has registered (new total is 108) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-53.c.maclab-ukbb.internal:34513 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 220.0 in stage 0.0 (TID 225, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 221.0 in stage 0.0 (TID 226, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 221, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-30.c.maclab-ukbb.internal:45787 with 2.7 GB RAM, BlockManagerId(81, jg1-w-30.c.maclab-ukbb.internal, 45787, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-95.c.maclab-ukbb.internal:36635 with 2.7 GB RAM, BlockManagerId(118, jg1-w-95.c.maclab-ukbb.internal, 36635, None) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.87:53560) with ID 91 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 91 has registered (new total is 109) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 222.0 in stage 0.0 (TID 227, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 222, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 223.0 in stage 0.0 (TID 228, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 223, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-30.c.maclab-ukbb.internal:43071 with 2.7 GB RAM, BlockManagerId(124, jg1-w-30.c.maclab-ukbb.internal, 43071, None) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-40.c.maclab-ukbb.internal:35481 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.87:53562) with ID 59 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 59 has registered (new total is 110) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 224.0 in stage 0.0 (TID 229, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 225.0 in stage 0.0 (TID 230, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-40.c.maclab-ukbb.internal:42781 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-71.c.maclab-ukbb.internal:43939 with 2.7 GB RAM, BlockManagerId(56, jg1-w-71.c.maclab-ukbb.internal, 43939, None) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-71.c.maclab-ukbb.internal:41555 with 2.7 GB RAM, BlockManagerId(89, jg1-w-71.c.maclab-ukbb.internal, 41555, None) 2020-04-02 15:10:26 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-8.c.maclab-ukbb.internal:42721 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-11.c.maclab-ukbb.internal:35881 with 2.7 GB RAM, BlockManagerId(117, jg1-w-11.c.maclab-ukbb.internal, 35881, None) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.81:48622) with ID 86 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 86 has registered (new total is 111) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 226.0 in stage 0.0 (TID 231, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 226, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 227.0 in stage 0.0 (TID 232, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 227, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.81:48620) with ID 53 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 53 has registered (new total is 112) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 228.0 in stage 0.0 (TID 233, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 228, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 229.0 in stage 0.0 (TID 234, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 229, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 230.0 in stage 0.0 (TID 235, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 230, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Finished task 60.0 in stage 0.0 (TID 65) in 2712 ms on jg1-w-29.c.maclab-ukbb.internal (executor 1) (7/30000) 2020-04-02 15:10:26 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-11.c.maclab-ukbb.internal:37639 with 2.7 GB RAM, BlockManagerId(73, jg1-w-11.c.maclab-ukbb.internal, 37639, None) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.79:55586) with ID 85 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 85 has registered (new total is 113) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 231.0 in stage 0.0 (TID 236, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 231, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 232.0 in stage 0.0 (TID 237, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 232, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.79:55588) with ID 145 2020-04-02 15:10:26 ExecutorAllocationManager: INFO: New executor 145 has registered (new total is 114) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 233.0 in stage 0.0 (TID 238, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 233, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:26 TaskSetManager: INFO: Starting task 234.0 in stage 0.0 (TID 239, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 234, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-8.c.maclab-ukbb.internal:45003 with 2.7 GB RAM, BlockManagerId(180, jg1-w-8.c.maclab-ukbb.internal, 45003, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-0.c.maclab-ukbb.internal:36673 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.93:57472) with ID 82 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 82 has registered (new total is 115) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 235.0 in stage 0.0 (TID 240, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 235, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 236.0 in stage 0.0 (TID 241, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 236, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.93:57474) with ID 126 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 126 has registered (new total is 116) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 237.0 in stage 0.0 (TID 242, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 237, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 238.0 in stage 0.0 (TID 243, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 238, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-32.c.maclab-ukbb.internal:43527 with 2.7 GB RAM, BlockManagerId(57, jg1-w-32.c.maclab-ukbb.internal, 43527, None) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-15.c.maclab-ukbb.internal:36001 with 2.7 GB RAM, BlockManagerId(83, jg1-w-15.c.maclab-ukbb.internal, 36001, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-6.c.maclab-ukbb.internal:39431 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-99.c.maclab-ukbb.internal:39857 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-99.c.maclab-ukbb.internal:39871 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-3.c.maclab-ukbb.internal:39443 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-53.c.maclab-ukbb.internal:39353 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-15.c.maclab-ukbb.internal:46459 with 2.7 GB RAM, BlockManagerId(127, jg1-w-15.c.maclab-ukbb.internal, 46459, None) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-4.c.maclab-ukbb.internal:39491 with 2.7 GB RAM, BlockManagerId(173, jg1-w-4.c.maclab-ukbb.internal, 39491, None) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-32.c.maclab-ukbb.internal:39093 with 2.7 GB RAM, BlockManagerId(90, jg1-w-32.c.maclab-ukbb.internal, 39093, None) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-91.c.maclab-ukbb.internal:41141 with 2.7 GB RAM, BlockManagerId(91, jg1-w-91.c.maclab-ukbb.internal, 41141, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-45.c.maclab-ukbb.internal:32869 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-91.c.maclab-ukbb.internal:34825 with 2.7 GB RAM, BlockManagerId(59, jg1-w-91.c.maclab-ukbb.internal, 34825, None) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.1.196:54410) with ID 176 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 176 has registered (new total is 117) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 239.0 in stage 0.0 (TID 244, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 239, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 240.0 in stage 0.0 (TID 245, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 240, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-87.c.maclab-ukbb.internal:46771 with 2.7 GB RAM, BlockManagerId(53, jg1-w-87.c.maclab-ukbb.internal, 46771, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-28.c.maclab-ukbb.internal:42563 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-28.c.maclab-ukbb.internal:38293 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-87.c.maclab-ukbb.internal:35653 with 2.7 GB RAM, BlockManagerId(86, jg1-w-87.c.maclab-ukbb.internal, 35653, None) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-83.c.maclab-ukbb.internal:46767 with 2.7 GB RAM, BlockManagerId(85, jg1-w-83.c.maclab-ukbb.internal, 46767, None) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.85:39070) with ID 75 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 75 has registered (new total is 118) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 241.0 in stage 0.0 (TID 246, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 241, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 242.0 in stage 0.0 (TID 247, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-60.c.maclab-ukbb.internal:35569 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.85:39068) with ID 122 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 122 has registered (new total is 119) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 243.0 in stage 0.0 (TID 248, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 243, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 244.0 in stage 0.0 (TID 249, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 244, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-12.c.maclab-ukbb.internal:45865 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-4.c.maclab-ukbb.internal:45883 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-83.c.maclab-ukbb.internal:41789 with 2.7 GB RAM, BlockManagerId(145, jg1-w-83.c.maclab-ukbb.internal, 41789, None) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-97.c.maclab-ukbb.internal:40065 with 2.7 GB RAM, BlockManagerId(126, jg1-w-97.c.maclab-ukbb.internal, 40065, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-45.c.maclab-ukbb.internal:39577 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-60.c.maclab-ukbb.internal:40341 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-97.c.maclab-ukbb.internal:37155 with 2.7 GB RAM, BlockManagerId(82, jg1-w-97.c.maclab-ukbb.internal, 37155, None) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-6.c.maclab-ukbb.internal:44497 with 2.7 GB RAM, BlockManagerId(176, jg1-w-6.c.maclab-ukbb.internal, 44497, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-35.c.maclab-ukbb.internal:33321 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-12.c.maclab-ukbb.internal:33639 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-9.c.maclab-ukbb.internal:38919 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-1.c.maclab-ukbb.internal:42103 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-13.c.maclab-ukbb.internal:45751 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-7.c.maclab-ukbb.internal:37755 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-25.c.maclab-ukbb.internal:41689 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-84.c.maclab-ukbb.internal:38213 with 2.7 GB RAM, BlockManagerId(122, jg1-w-84.c.maclab-ukbb.internal, 38213, None) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-84.c.maclab-ukbb.internal:42505 with 2.7 GB RAM, BlockManagerId(75, jg1-w-84.c.maclab-ukbb.internal, 42505, None) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.68:44648) with ID 130 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 130 has registered (new total is 120) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 245.0 in stage 0.0 (TID 250, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 245, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 246.0 in stage 0.0 (TID 251, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.68:44650) with ID 97 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 97 has registered (new total is 121) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 247.0 in stage 0.0 (TID 252, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 248.0 in stage 0.0 (TID 253, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-62.c.maclab-ukbb.internal:35195 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-76.c.maclab-ukbb.internal:42155 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-16.c.maclab-ukbb.internal:44101 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.3:41762) with ID 133 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 133 has registered (new total is 122) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 249.0 in stage 0.0 (TID 254, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 249, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 250.0 in stage 0.0 (TID 255, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 250, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.3:41760) with ID 101 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 101 has registered (new total is 123) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 251.0 in stage 0.0 (TID 256, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 251, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 252.0 in stage 0.0 (TID 257, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 252, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-86.c.maclab-ukbb.internal:42407 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-16.c.maclab-ukbb.internal:35981 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-35.c.maclab-ukbb.internal:45861 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-13.c.maclab-ukbb.internal:43977 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-8.c.maclab-ukbb.internal:45003 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-76.c.maclab-ukbb.internal:41885 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-98.c.maclab-ukbb.internal:41397 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.24:48528) with ID 107 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 107 has registered (new total is 124) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 253.0 in stage 0.0 (TID 258, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 253, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 254.0 in stage 0.0 (TID 259, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 254, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.24:48526) with ID 140 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 140 has registered (new total is 125) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 255.0 in stage 0.0 (TID 260, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 255, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 256.0 in stage 0.0 (TID 261, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 256, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-98.c.maclab-ukbb.internal:33635 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-81.c.maclab-ukbb.internal:40683 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-89.c.maclab-ukbb.internal:35183 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-65.c.maclab-ukbb.internal:43659 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-68.c.maclab-ukbb.internal:43915 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-95.c.maclab-ukbb.internal:36635 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-63.c.maclab-ukbb.internal:37475 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: Requesting 1807 new executors because tasks are backlogged (new desired total will be 10000) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-73.c.maclab-ukbb.internal:40759 with 2.7 GB RAM, BlockManagerId(97, jg1-w-73.c.maclab-ukbb.internal, 40759, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-75.c.maclab-ukbb.internal:42129 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-95.c.maclab-ukbb.internal:35565 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.30:34740) with ID 137 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 137 has registered (new total is 126) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-73.c.maclab-ukbb.internal:46123 with 2.7 GB RAM, BlockManagerId(130, jg1-w-73.c.maclab-ukbb.internal, 46123, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-23.c.maclab-ukbb.internal:45803 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 257.0 in stage 0.0 (TID 262, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 258.0 in stage 0.0 (TID 263, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 258, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-30.c.maclab-ukbb.internal:45787 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-85.c.maclab-ukbb.internal:37977 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.30:34742) with ID 104 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 104 has registered (new total is 127) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 259.0 in stage 0.0 (TID 264, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 259, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 260.0 in stage 0.0 (TID 265, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 260, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-19.c.maclab-ukbb.internal:34759 with 2.7 GB RAM, BlockManagerId(101, jg1-w-19.c.maclab-ukbb.internal, 34759, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-63.c.maclab-ukbb.internal:44371 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-4.c.maclab-ukbb.internal:39491 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-19.c.maclab-ukbb.internal:39051 with 2.7 GB RAM, BlockManagerId(133, jg1-w-19.c.maclab-ukbb.internal, 39051, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-71.c.maclab-ukbb.internal:41555 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-25.c.maclab-ukbb.internal:42681 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-68.c.maclab-ukbb.internal:33213 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-85.c.maclab-ukbb.internal:39213 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-11.c.maclab-ukbb.internal:37639 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-33.c.maclab-ukbb.internal:41519 with 2.7 GB RAM, BlockManagerId(107, jg1-w-33.c.maclab-ukbb.internal, 41519, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-11.c.maclab-ukbb.internal:35881 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-71.c.maclab-ukbb.internal:43939 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.91:33812) with ID 131 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 131 has registered (new total is 128) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-86.c.maclab-ukbb.internal:39813 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 261.0 in stage 0.0 (TID 266, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 261, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 262.0 in stage 0.0 (TID 267, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 262, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.92:49338) with ID 144 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 144 has registered (new total is 129) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 263.0 in stage 0.0 (TID 268, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 263, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 264.0 in stage 0.0 (TID 269, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 264, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-33.c.maclab-ukbb.internal:43073 with 2.7 GB RAM, BlockManagerId(140, jg1-w-33.c.maclab-ukbb.internal, 43073, None) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.92:49336) with ID 113 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 113 has registered (new total is 130) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 265.0 in stage 0.0 (TID 270, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 265, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 266.0 in stage 0.0 (TID 271, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 266, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.91:33814) with ID 99 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 99 has registered (new total is 131) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 267.0 in stage 0.0 (TID 272, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 267, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 268.0 in stage 0.0 (TID 273, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 268, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.72:55608) with ID 147 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 147 has registered (new total is 132) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 269.0 in stage 0.0 (TID 274, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 269, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 270.0 in stage 0.0 (TID 275, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 270, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-39.c.maclab-ukbb.internal:34709 with 2.7 GB RAM, BlockManagerId(104, jg1-w-39.c.maclab-ukbb.internal, 34709, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-91.c.maclab-ukbb.internal:34825 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-39.c.maclab-ukbb.internal:39131 with 2.7 GB RAM, BlockManagerId(137, jg1-w-39.c.maclab-ukbb.internal, 39131, None) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.72:55610) with ID 128 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 128 has registered (new total is 133) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 271.0 in stage 0.0 (TID 276, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 271, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 272.0 in stage 0.0 (TID 277, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 272, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-79.c.maclab-ukbb.internal:36181 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-29.c.maclab-ukbb.internal:44999 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-65.c.maclab-ukbb.internal:46333 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.77:60364) with ID 143 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 143 has registered (new total is 134) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 273.0 in stage 0.0 (TID 278, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 273, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 274.0 in stage 0.0 (TID 279, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.77:60366) with ID 108 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 108 has registered (new total is 135) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 275.0 in stage 0.0 (TID 280, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 276.0 in stage 0.0 (TID 281, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-32.c.maclab-ukbb.internal:39093 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.60:59050) with ID 141 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 141 has registered (new total is 136) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-32.c.maclab-ukbb.internal:43527 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 277.0 in stage 0.0 (TID 282, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 278.0 in stage 0.0 (TID 283, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 278, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.60:59048) with ID 110 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 110 has registered (new total is 137) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 279.0 in stage 0.0 (TID 284, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 279, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 280.0 in stage 0.0 (TID 285, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-30.c.maclab-ukbb.internal:43071 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-91.c.maclab-ukbb.internal:41141 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-6.c.maclab-ukbb.internal:44497 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-23.c.maclab-ukbb.internal:44757 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-64.c.maclab-ukbb.internal:43817 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-20.c.maclab-ukbb.internal:34929 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-87.c.maclab-ukbb.internal:46771 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.48:46878) with ID 138 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 138 has registered (new total is 138) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 281.0 in stage 0.0 (TID 286, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 282.0 in stage 0.0 (TID 287, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-89.c.maclab-ukbb.internal:40005 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-93.c.maclab-ukbb.internal:46153 with 2.7 GB RAM, BlockManagerId(113, jg1-w-93.c.maclab-ukbb.internal, 46153, None) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-94.c.maclab-ukbb.internal:34785 with 2.7 GB RAM, BlockManagerId(131, jg1-w-94.c.maclab-ukbb.internal, 34785, None) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.48:46876) with ID 106 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 106 has registered (new total is 139) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 283.0 in stage 0.0 (TID 288, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 283, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 284.0 in stage 0.0 (TID 289, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 284, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.64:40012) with ID 135 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-94.c.maclab-ukbb.internal:40327 with 2.7 GB RAM, BlockManagerId(99, jg1-w-94.c.maclab-ukbb.internal, 40327, None) 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 135 has registered (new total is 140) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 285.0 in stage 0.0 (TID 290, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 285, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 286.0 in stage 0.0 (TID 291, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 286, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.64:40014) with ID 102 2020-04-02 15:10:27 ExecutorAllocationManager: INFO: New executor 102 has registered (new total is 141) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 287.0 in stage 0.0 (TID 292, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 287, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-15.c.maclab-ukbb.internal:46459 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 TaskSetManager: INFO: Starting task 288.0 in stage 0.0 (TID 293, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-15.c.maclab-ukbb.internal:36001 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-83.c.maclab-ukbb.internal:46767 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-2.c.maclab-ukbb.internal:36149 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-93.c.maclab-ukbb.internal:44171 with 2.7 GB RAM, BlockManagerId(144, jg1-w-93.c.maclab-ukbb.internal, 44171, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-75.c.maclab-ukbb.internal:39423 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-51.c.maclab-ukbb.internal:37797 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-77.c.maclab-ukbb.internal:43391 with 2.7 GB RAM, BlockManagerId(128, jg1-w-77.c.maclab-ukbb.internal, 43391, None) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-64.c.maclab-ukbb.internal:35455 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-38.c.maclab-ukbb.internal:40847 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:27 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-77.c.maclab-ukbb.internal:39733 with 2.7 GB RAM, BlockManagerId(147, jg1-w-77.c.maclab-ukbb.internal, 39733, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-38.c.maclab-ukbb.internal:36883 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-51.c.maclab-ukbb.internal:38039 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-21.c.maclab-ukbb.internal:45461 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-97.c.maclab-ukbb.internal:40065 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-82.c.maclab-ukbb.internal:46589 with 2.7 GB RAM, BlockManagerId(108, jg1-w-82.c.maclab-ukbb.internal, 46589, None) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-82.c.maclab-ukbb.internal:42273 with 2.7 GB RAM, BlockManagerId(143, jg1-w-82.c.maclab-ukbb.internal, 42273, None) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-67.c.maclab-ukbb.internal:39707 with 2.7 GB RAM, BlockManagerId(110, jg1-w-67.c.maclab-ukbb.internal, 39707, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-83.c.maclab-ukbb.internal:41789 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-67.c.maclab-ukbb.internal:44843 with 2.7 GB RAM, BlockManagerId(141, jg1-w-67.c.maclab-ukbb.internal, 44843, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-48.c.maclab-ukbb.internal:35373 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-97.c.maclab-ukbb.internal:37155 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.67:35028) with ID 103 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 103 has registered (new total is 142) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 289.0 in stage 0.0 (TID 294, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 290.0 in stage 0.0 (TID 295, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 290, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.67:35030) with ID 136 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 136 has registered (new total is 143) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-21.c.maclab-ukbb.internal:34735 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 291.0 in stage 0.0 (TID 296, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 291, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 292.0 in stage 0.0 (TID 297, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-78.c.maclab-ukbb.internal:46397 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-79.c.maclab-ukbb.internal:40051 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-78.c.maclab-ukbb.internal:33983 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-70.c.maclab-ukbb.internal:37919 with 2.7 GB RAM, BlockManagerId(102, jg1-w-70.c.maclab-ukbb.internal, 37919, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-53.c.maclab-ukbb.internal:34513 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-87.c.maclab-ukbb.internal:35653 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-52.c.maclab-ukbb.internal:37873 with 2.7 GB RAM, BlockManagerId(138, jg1-w-52.c.maclab-ukbb.internal, 37873, None) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-70.c.maclab-ukbb.internal:34491 with 2.7 GB RAM, BlockManagerId(135, jg1-w-70.c.maclab-ukbb.internal, 34491, None) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-52.c.maclab-ukbb.internal:38619 with 2.7 GB RAM, BlockManagerId(106, jg1-w-52.c.maclab-ukbb.internal, 38619, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-0.c.maclab-ukbb.internal:36673 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.54:60812) with ID 109 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 109 has registered (new total is 144) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 293.0 in stage 0.0 (TID 298, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 293, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 294.0 in stage 0.0 (TID 299, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 294, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.54:60810) with ID 142 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 142 has registered (new total is 145) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 295.0 in stage 0.0 (TID 300, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 295, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 296.0 in stage 0.0 (TID 301, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 296, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-22.c.maclab-ukbb.internal:41859 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-84.c.maclab-ukbb.internal:42505 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-20.c.maclab-ukbb.internal:44655 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.47:54424) with ID 134 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 134 has registered (new total is 146) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-84.c.maclab-ukbb.internal:38213 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 297.0 in stage 0.0 (TID 302, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 297, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 298.0 in stage 0.0 (TID 303, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 298, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.47:54426) with ID 100 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 100 has registered (new total is 147) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 299.0 in stage 0.0 (TID 304, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 299, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 300.0 in stage 0.0 (TID 305, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 300, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-69.c.maclab-ukbb.internal:33471 with 2.7 GB RAM, BlockManagerId(103, jg1-w-69.c.maclab-ukbb.internal, 33471, None) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-69.c.maclab-ukbb.internal:39191 with 2.7 GB RAM, BlockManagerId(136, jg1-w-69.c.maclab-ukbb.internal, 39191, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-48.c.maclab-ukbb.internal:34419 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-53.c.maclab-ukbb.internal:39353 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-49.c.maclab-ukbb.internal:43565 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-49.c.maclab-ukbb.internal:46157 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-45.c.maclab-ukbb.internal:39577 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-61.c.maclab-ukbb.internal:41337 with 2.7 GB RAM, BlockManagerId(142, jg1-w-61.c.maclab-ukbb.internal, 41337, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-22.c.maclab-ukbb.internal:35925 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.89:36790) with ID 132 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 132 has registered (new total is 148) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 301.0 in stage 0.0 (TID 306, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 301, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 302.0 in stage 0.0 (TID 307, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 302, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-73.c.maclab-ukbb.internal:46123 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.89:36792) with ID 98 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 98 has registered (new total is 149) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 303.0 in stage 0.0 (TID 308, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 304.0 in stage 0.0 (TID 309, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 304, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-61.c.maclab-ukbb.internal:38829 with 2.7 GB RAM, BlockManagerId(109, jg1-w-61.c.maclab-ukbb.internal, 38829, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-35.c.maclab-ukbb.internal:33321 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-54.c.maclab-ukbb.internal:42567 with 2.7 GB RAM, BlockManagerId(100, jg1-w-54.c.maclab-ukbb.internal, 42567, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-40.c.maclab-ukbb.internal:35481 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-54.c.maclab-ukbb.internal:43337 with 2.7 GB RAM, BlockManagerId(134, jg1-w-54.c.maclab-ukbb.internal, 43337, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-40.c.maclab-ukbb.internal:42781 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.37:56236) with ID 129 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 129 has registered (new total is 150) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-2.c.maclab-ukbb.internal:36149 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 305.0 in stage 0.0 (TID 310, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 305, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 306.0 in stage 0.0 (TID 311, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 306, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.37:56238) with ID 150 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 150 has registered (new total is 151) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 307.0 in stage 0.0 (TID 312, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 307, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 308.0 in stage 0.0 (TID 313, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 308, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.39:36226) with ID 105 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 105 has registered (new total is 152) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-90.c.maclab-ukbb.internal:41817 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 309.0 in stage 0.0 (TID 314, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 309, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 310.0 in stage 0.0 (TID 315, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.39:36224) with ID 139 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 139 has registered (new total is 153) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 311.0 in stage 0.0 (TID 316, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 311, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 312.0 in stage 0.0 (TID 317, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 312, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-45.c.maclab-ukbb.internal:32869 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 313.0 in stage 0.0 (TID 318, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 313, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Lost task 154.0 in stage 0.0 (TID 159) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 5] 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-90.c.maclab-ukbb.internal:46775 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-73.c.maclab-ukbb.internal:40759 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-39.c.maclab-ukbb.internal:39131 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-28.c.maclab-ukbb.internal:38293 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-19.c.maclab-ukbb.internal:39051 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-39.c.maclab-ukbb.internal:34709 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-19.c.maclab-ukbb.internal:34759 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-13.c.maclab-ukbb.internal:45751 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-8.c.maclab-ukbb.internal:42721 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-28.c.maclab-ukbb.internal:42563 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-33.c.maclab-ukbb.internal:43073 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-33.c.maclab-ukbb.internal:41519 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-93.c.maclab-ukbb.internal:44171 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-76.c.maclab-ukbb.internal:41885 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-76.c.maclab-ukbb.internal:42155 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-96.c.maclab-ukbb.internal:45841 with 2.7 GB RAM, BlockManagerId(132, jg1-w-96.c.maclab-ukbb.internal, 45841, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-30.c.maclab-ukbb.internal:45787 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-43.c.maclab-ukbb.internal:44457 with 2.7 GB RAM, BlockManagerId(129, jg1-w-43.c.maclab-ukbb.internal, 44457, None) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-43.c.maclab-ukbb.internal:39461 with 2.7 GB RAM, BlockManagerId(150, jg1-w-43.c.maclab-ukbb.internal, 39461, None) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 154.1 in stage 0.0 (TID 319, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Finished task 117.0 in stage 0.0 (TID 122) in 2839 ms on jg1-w-62.c.maclab-ukbb.internal (executor 2) (8/30000) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-93.c.maclab-ukbb.internal:46153 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-89.c.maclab-ukbb.internal:35183 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-44.c.maclab-ukbb.internal:42125 with 2.7 GB RAM, BlockManagerId(139, jg1-w-44.c.maclab-ukbb.internal, 42125, None) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-44.c.maclab-ukbb.internal:40089 with 2.7 GB RAM, BlockManagerId(105, jg1-w-44.c.maclab-ukbb.internal, 40089, None) 2020-04-02 15:10:28 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-96.c.maclab-ukbb.internal:35083 with 2.7 GB RAM, BlockManagerId(98, jg1-w-96.c.maclab-ukbb.internal, 35083, None) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-77.c.maclab-ukbb.internal:43391 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-77.c.maclab-ukbb.internal:39733 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-20.c.maclab-ukbb.internal:34929 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-67.c.maclab-ukbb.internal:39707 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-82.c.maclab-ukbb.internal:42273 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-99.c.maclab-ukbb.internal:39857 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-94.c.maclab-ukbb.internal:34785 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-68.c.maclab-ukbb.internal:33213 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-99.c.maclab-ukbb.internal:39871 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-86.c.maclab-ukbb.internal:42407 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-0.c.maclab-ukbb.internal:36673 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-3.c.maclab-ukbb.internal:37597 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-35.c.maclab-ukbb.internal:45861 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-82.c.maclab-ukbb.internal:46589 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-16.c.maclab-ukbb.internal:44101 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-4.c.maclab-ukbb.internal:45883 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-70.c.maclab-ukbb.internal:34491 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-81.c.maclab-ukbb.internal:40683 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-67.c.maclab-ukbb.internal:44843 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-6.c.maclab-ukbb.internal:39431 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-16.c.maclab-ukbb.internal:35981 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-13.c.maclab-ukbb.internal:43977 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-94.c.maclab-ukbb.internal:40327 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-12.c.maclab-ukbb.internal:33639 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-70.c.maclab-ukbb.internal:37919 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.41:54158) with ID 156 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 156 has registered (new total is 154) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-52.c.maclab-ukbb.internal:37873 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 314.0 in stage 0.0 (TID 320, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 314, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 315.0 in stage 0.0 (TID 321, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 315, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-86.c.maclab-ukbb.internal:39813 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.41:54156) with ID 181 2020-04-02 15:10:28 ExecutorAllocationManager: INFO: New executor 181 has registered (new total is 155) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 316.0 in stage 0.0 (TID 322, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 316, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 TaskSetManager: INFO: Starting task 317.0 in stage 0.0 (TID 323, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 317, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-63.c.maclab-ukbb.internal:37475 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-95.c.maclab-ukbb.internal:36635 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-63.c.maclab-ukbb.internal:44371 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-91.c.maclab-ukbb.internal:41141 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-68.c.maclab-ukbb.internal:43915 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:28 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-85.c.maclab-ukbb.internal:39213 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-69.c.maclab-ukbb.internal:39191 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-30.c.maclab-ukbb.internal:43071 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.18:42360) with ID 157 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 157 has registered (new total is 156) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-69.c.maclab-ukbb.internal:33471 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 318.0 in stage 0.0 (TID 324, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 318, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 319.0 in stage 0.0 (TID 325, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 319, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.2:52964) with ID 191 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 191 has registered (new total is 157) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 320.0 in stage 0.0 (TID 326, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 320, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 321.0 in stage 0.0 (TID 327, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 321, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.18:42358) with ID 182 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 182 has registered (new total is 158) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 322.0 in stage 0.0 (TID 328, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 322, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-52.c.maclab-ukbb.internal:38619 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 323.0 in stage 0.0 (TID 329, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 323, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.88:33012) with ID 196 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 196 has registered (new total is 159) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-20.c.maclab-ukbb.internal:44655 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-71.c.maclab-ukbb.internal:41555 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 324.0 in stage 0.0 (TID 330, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 324, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 325.0 in stage 0.0 (TID 331, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 325, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.88:33014) with ID 171 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-15.c.maclab-ukbb.internal:46459 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 171 has registered (new total is 160) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 326.0 in stage 0.0 (TID 332, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 326, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 327.0 in stage 0.0 (TID 333, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.26:60412) with ID 158 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 158 has registered (new total is 161) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 328.0 in stage 0.0 (TID 334, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 328, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 329.0 in stage 0.0 (TID 335, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 329, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.26:60410) with ID 183 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 183 has registered (new total is 162) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 330.0 in stage 0.0 (TID 336, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 330, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 331.0 in stage 0.0 (TID 337, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.2:52966) with ID 166 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 166 has registered (new total is 163) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 332.0 in stage 0.0 (TID 338, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 332, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 333.0 in stage 0.0 (TID 339, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.29:40044) with ID 187 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 187 has registered (new total is 164) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 334.0 in stage 0.0 (TID 340, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 335.0 in stage 0.0 (TID 341, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.29:40042) with ID 162 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 162 has registered (new total is 165) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 336.0 in stage 0.0 (TID 342, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 336, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-71.c.maclab-ukbb.internal:43939 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 337.0 in stage 0.0 (TID 343, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 337, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-62.c.maclab-ukbb.internal:35195 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-98.c.maclab-ukbb.internal:33635 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.10:40134) with ID 172 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-46.c.maclab-ukbb.internal:44887 with 2.7 GB RAM, BlockManagerId(181, jg1-w-46.c.maclab-ukbb.internal, 44887, None) 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 172 has registered (new total is 166) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 338.0 in stage 0.0 (TID 344, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 338, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 339.0 in stage 0.0 (TID 345, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 339, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.10:40136) with ID 197 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 197 has registered (new total is 167) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 340.0 in stage 0.0 (TID 346, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 341.0 in stage 0.0 (TID 347, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 341, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-32.c.maclab-ukbb.internal:39093 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.49:50682) with ID 165 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 165 has registered (new total is 168) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-46.c.maclab-ukbb.internal:42379 with 2.7 GB RAM, BlockManagerId(156, jg1-w-46.c.maclab-ukbb.internal, 42379, None) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 342.0 in stage 0.0 (TID 348, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 342, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 343.0 in stage 0.0 (TID 349, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 343, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-61.c.maclab-ukbb.internal:38829 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-61.c.maclab-ukbb.internal:41337 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.49:50684) with ID 189 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 189 has registered (new total is 169) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 344.0 in stage 0.0 (TID 350, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 344, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 345.0 in stage 0.0 (TID 351, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-85.c.maclab-ukbb.internal:37977 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-11.c.maclab-ukbb.internal:37639 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-5.c.maclab-ukbb.internal:34667 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-11.c.maclab-ukbb.internal:35881 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-1.c.maclab-ukbb.internal:35189 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-91.c.maclab-ukbb.internal:34825 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-89.c.maclab-ukbb.internal:40005 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-4.c.maclab-ukbb.internal:39491 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-83.c.maclab-ukbb.internal:46767 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-12.c.maclab-ukbb.internal:45865 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.36:36476) with ID 148 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 148 has registered (new total is 170) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 346.0 in stage 0.0 (TID 352, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 347.0 in stage 0.0 (TID 353, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-83.c.maclab-ukbb.internal:41789 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.36:36474) with ID 174 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 174 has registered (new total is 171) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 348.0 in stage 0.0 (TID 354, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 349.0 in stage 0.0 (TID 355, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 349, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.27:48856) with ID 163 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 163 has registered (new total is 172) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 350.0 in stage 0.0 (TID 356, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 350, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 351.0 in stage 0.0 (TID 357, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.8:55552) with ID 186 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 186 has registered (new total is 173) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 352.0 in stage 0.0 (TID 358, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 352, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 353.0 in stage 0.0 (TID 359, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 353, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-8.c.maclab-ukbb.internal:45003 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.8:55550) with ID 161 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-92.c.maclab-ukbb.internal:38573 with 2.7 GB RAM, BlockManagerId(196, jg1-w-92.c.maclab-ukbb.internal, 38573, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-24.c.maclab-ukbb.internal:44893 with 2.7 GB RAM, BlockManagerId(182, jg1-w-24.c.maclab-ukbb.internal, 44893, None) 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 161 has registered (new total is 174) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 354.0 in stage 0.0 (TID 360, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 355.0 in stage 0.0 (TID 361, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-87.c.maclab-ukbb.internal:46771 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-24.c.maclab-ukbb.internal:43327 with 2.7 GB RAM, BlockManagerId(157, jg1-w-24.c.maclab-ukbb.internal, 43327, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-92.c.maclab-ukbb.internal:38371 with 2.7 GB RAM, BlockManagerId(171, jg1-w-92.c.maclab-ukbb.internal, 38371, None) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.27:48854) with ID 188 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 188 has registered (new total is 175) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 356.0 in stage 0.0 (TID 362, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 356, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-15.c.maclab-ukbb.internal:36001 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 357.0 in stage 0.0 (TID 363, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 357, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-31.c.maclab-ukbb.internal:39935 with 2.7 GB RAM, BlockManagerId(158, jg1-w-31.c.maclab-ukbb.internal, 39935, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-17.c.maclab-ukbb.internal:39813 with 2.7 GB RAM, BlockManagerId(191, jg1-w-17.c.maclab-ukbb.internal, 39813, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-98.c.maclab-ukbb.internal:41397 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-31.c.maclab-ukbb.internal:45995 with 2.7 GB RAM, BlockManagerId(183, jg1-w-31.c.maclab-ukbb.internal, 45995, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-18.c.maclab-ukbb.internal:39743 with 2.7 GB RAM, BlockManagerId(197, jg1-w-18.c.maclab-ukbb.internal, 39743, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-81.c.maclab-ukbb.internal:40683 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-32.c.maclab-ukbb.internal:43527 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-17.c.maclab-ukbb.internal:34879 with 2.7 GB RAM, BlockManagerId(166, jg1-w-17.c.maclab-ukbb.internal, 34879, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-95.c.maclab-ukbb.internal:35565 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-18.c.maclab-ukbb.internal:41847 with 2.7 GB RAM, BlockManagerId(172, jg1-w-18.c.maclab-ukbb.internal, 41847, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-55.c.maclab-ukbb.internal:46807 with 2.7 GB RAM, BlockManagerId(189, jg1-w-55.c.maclab-ukbb.internal, 46807, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-36.c.maclab-ukbb.internal:41751 with 2.7 GB RAM, BlockManagerId(162, jg1-w-36.c.maclab-ukbb.internal, 41751, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-65.c.maclab-ukbb.internal:43659 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.35:38252) with ID 167 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 167 has registered (new total is 176) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 358.0 in stage 0.0 (TID 364, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 358, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 359.0 in stage 0.0 (TID 365, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.35:38254) with ID 192 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 192 has registered (new total is 177) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-36.c.maclab-ukbb.internal:42733 with 2.7 GB RAM, BlockManagerId(187, jg1-w-36.c.maclab-ukbb.internal, 42733, None) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 360.0 in stage 0.0 (TID 366, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 361.0 in stage 0.0 (TID 367, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 361, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-54.c.maclab-ukbb.internal:43337 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-54.c.maclab-ukbb.internal:42567 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-55.c.maclab-ukbb.internal:42811 with 2.7 GB RAM, BlockManagerId(165, jg1-w-55.c.maclab-ukbb.internal, 42811, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-6.c.maclab-ukbb.internal:44497 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.21:51466) with ID 175 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 175 has registered (new total is 178) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 362.0 in stage 0.0 (TID 368, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 362, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 363.0 in stage 0.0 (TID 369, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 363, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.21:51468) with ID 149 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 149 has registered (new total is 179) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 364.0 in stage 0.0 (TID 370, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 364, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 365.0 in stage 0.0 (TID 371, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 365, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-29.c.maclab-ukbb.internal:44999 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-9.c.maclab-ukbb.internal:33835 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-41.c.maclab-ukbb.internal:40953 with 2.7 GB RAM, BlockManagerId(148, jg1-w-41.c.maclab-ukbb.internal, 40953, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-37.c.maclab-ukbb.internal:44391 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-97.c.maclab-ukbb.internal:40065 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-34.c.maclab-ukbb.internal:40847 with 2.7 GB RAM, BlockManagerId(188, jg1-w-34.c.maclab-ukbb.internal, 40847, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-34.c.maclab-ukbb.internal:33417 with 2.7 GB RAM, BlockManagerId(163, jg1-w-34.c.maclab-ukbb.internal, 33417, None) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.52:56404) with ID 170 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 170 has registered (new total is 180) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-87.c.maclab-ukbb.internal:35653 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 366.0 in stage 0.0 (TID 372, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 367.0 in stage 0.0 (TID 373, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 367, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.52:56402) with ID 195 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 195 has registered (new total is 181) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 368.0 in stage 0.0 (TID 374, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 368, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 369.0 in stage 0.0 (TID 375, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 369, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-37.c.maclab-ukbb.internal:44731 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.11:48238) with ID 160 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 160 has registered (new total is 182) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-14.c.maclab-ukbb.internal:42031 with 2.7 GB RAM, BlockManagerId(186, jg1-w-14.c.maclab-ukbb.internal, 42031, None) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 370.0 in stage 0.0 (TID 376, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 370, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 371.0 in stage 0.0 (TID 377, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 371, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-14.c.maclab-ukbb.internal:38859 with 2.7 GB RAM, BlockManagerId(161, jg1-w-14.c.maclab-ukbb.internal, 38859, None) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.40:60778) with ID 194 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 194 has registered (new total is 183) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 372.0 in stage 0.0 (TID 378, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 373.0 in stage 0.0 (TID 379, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 373, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.40:60776) with ID 169 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 169 has registered (new total is 184) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 374.0 in stage 0.0 (TID 380, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 374, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 375.0 in stage 0.0 (TID 381, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 375, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.11:48236) with ID 185 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 185 has registered (new total is 185) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 376.0 in stage 0.0 (TID 382, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 376, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 377.0 in stage 0.0 (TID 383, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 377, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-97.c.maclab-ukbb.internal:37155 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.50:52254) with ID 151 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 151 has registered (new total is 186) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-42.c.maclab-ukbb.internal:34507 with 2.7 GB RAM, BlockManagerId(192, jg1-w-42.c.maclab-ukbb.internal, 34507, None) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 378.0 in stage 0.0 (TID 384, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 378, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 379.0 in stage 0.0 (TID 385, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 379, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.50:52256) with ID 177 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-41.c.maclab-ukbb.internal:40599 with 2.7 GB RAM, BlockManagerId(174, jg1-w-41.c.maclab-ukbb.internal, 40599, None) 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 177 has registered (new total is 187) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 380.0 in stage 0.0 (TID 386, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 380, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 381.0 in stage 0.0 (TID 387, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 381, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.83:45634) with ID 152 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 152 has registered (new total is 188) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-73.c.maclab-ukbb.internal:46123 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-44.c.maclab-ukbb.internal:40089 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-80.c.maclab-ukbb.internal:37651 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 382.0 in stage 0.0 (TID 388, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 382, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 383.0 in stage 0.0 (TID 389, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 383, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.83:45636) with ID 178 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 178 has registered (new total is 189) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 384.0 in stage 0.0 (TID 390, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 384, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 385.0 in stage 0.0 (TID 391, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 385, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-42.c.maclab-ukbb.internal:40721 with 2.7 GB RAM, BlockManagerId(167, jg1-w-42.c.maclab-ukbb.internal, 40721, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-43.c.maclab-ukbb.internal:39461 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-44.c.maclab-ukbb.internal:42125 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-56.c.maclab-ukbb.internal:44123 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.70:60414) with ID 179 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 179 has registered (new total is 190) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 386.0 in stage 0.0 (TID 392, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 386, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 387.0 in stage 0.0 (TID 393, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 387, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.70:60416) with ID 154 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 154 has registered (new total is 191) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 388.0 in stage 0.0 (TID 394, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 388, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 389.0 in stage 0.0 (TID 395, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 389, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-96.c.maclab-ukbb.internal:35083 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-56.c.maclab-ukbb.internal:43007 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-84.c.maclab-ukbb.internal:42505 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-27.c.maclab-ukbb.internal:38175 with 2.7 GB RAM, BlockManagerId(149, jg1-w-27.c.maclab-ukbb.internal, 38175, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-27.c.maclab-ukbb.internal:41459 with 2.7 GB RAM, BlockManagerId(175, jg1-w-27.c.maclab-ukbb.internal, 41459, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-62.c.maclab-ukbb.internal:35195 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-10.c.maclab-ukbb.internal:33969 with 2.7 GB RAM, BlockManagerId(185, jg1-w-10.c.maclab-ukbb.internal, 33969, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-50.c.maclab-ukbb.internal:39621 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-65.c.maclab-ukbb.internal:46333 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.69:49124) with ID 168 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 168 has registered (new total is 192) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 390.0 in stage 0.0 (TID 396, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 391.0 in stage 0.0 (TID 397, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 391, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.69:49122) with ID 193 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 193 has registered (new total is 193) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 392.0 in stage 0.0 (TID 398, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 393.0 in stage 0.0 (TID 399, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 393, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 394.0 in stage 0.0 (TID 400, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 394, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Finished task 230.0 in stage 0.0 (TID 235) in 2677 ms on jg1-w-29.c.maclab-ukbb.internal (executor 1) (9/30000) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-58.c.maclab-ukbb.internal:42063 with 2.7 GB RAM, BlockManagerId(170, jg1-w-58.c.maclab-ukbb.internal, 42063, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-80.c.maclab-ukbb.internal:43987 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-10.c.maclab-ukbb.internal:33053 with 2.7 GB RAM, BlockManagerId(160, jg1-w-10.c.maclab-ukbb.internal, 33053, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-19.c.maclab-ukbb.internal:34759 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-47.c.maclab-ukbb.internal:39845 with 2.7 GB RAM, BlockManagerId(169, jg1-w-47.c.maclab-ukbb.internal, 39845, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-58.c.maclab-ukbb.internal:33577 with 2.7 GB RAM, BlockManagerId(195, jg1-w-58.c.maclab-ukbb.internal, 33577, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-50.c.maclab-ukbb.internal:34241 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-57.c.maclab-ukbb.internal:38723 with 2.7 GB RAM, BlockManagerId(151, jg1-w-57.c.maclab-ukbb.internal, 38723, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-47.c.maclab-ukbb.internal:40599 with 2.7 GB RAM, BlockManagerId(194, jg1-w-47.c.maclab-ukbb.internal, 40599, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-26.c.maclab-ukbb.internal:44151 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-84.c.maclab-ukbb.internal:38213 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-57.c.maclab-ukbb.internal:39279 with 2.7 GB RAM, BlockManagerId(177, jg1-w-57.c.maclab-ukbb.internal, 39279, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-26.c.maclab-ukbb.internal:44731 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.55:36846) with ID 164 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 164 has registered (new total is 194) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 395.0 in stage 0.0 (TID 401, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 395, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 396.0 in stage 0.0 (TID 402, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 396, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-5.c.maclab-ukbb.internal:43941 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.55:36848) with ID 190 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 190 has registered (new total is 195) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 397.0 in stage 0.0 (TID 403, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 397, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 398.0 in stage 0.0 (TID 404, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 398, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-88.c.maclab-ukbb.internal:42287 with 2.7 GB RAM, BlockManagerId(152, jg1-w-88.c.maclab-ukbb.internal, 42287, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-96.c.maclab-ukbb.internal:45841 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-78.c.maclab-ukbb.internal:33983 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-88.c.maclab-ukbb.internal:34081 with 2.7 GB RAM, BlockManagerId(178, jg1-w-88.c.maclab-ukbb.internal, 34081, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-73.c.maclab-ukbb.internal:40759 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-46.c.maclab-ukbb.internal:42379 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-72.c.maclab-ukbb.internal:35339 with 2.7 GB RAM, BlockManagerId(179, jg1-w-72.c.maclab-ukbb.internal, 35339, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-24.c.maclab-ukbb.internal:43327 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-33.c.maclab-ukbb.internal:43073 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-39.c.maclab-ukbb.internal:34709 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-46.c.maclab-ukbb.internal:44887 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-74.c.maclab-ukbb.internal:41925 with 2.7 GB RAM, BlockManagerId(168, jg1-w-74.c.maclab-ukbb.internal, 41925, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-72.c.maclab-ukbb.internal:42307 with 2.7 GB RAM, BlockManagerId(154, jg1-w-72.c.maclab-ukbb.internal, 42307, None) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-74.c.maclab-ukbb.internal:41657 with 2.7 GB RAM, BlockManagerId(193, jg1-w-74.c.maclab-ukbb.internal, 41657, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-24.c.maclab-ukbb.internal:44893 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-33.c.maclab-ukbb.internal:41519 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-43.c.maclab-ukbb.internal:44457 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 399.0 in stage 0.0 (TID 405, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Finished task 213.0 in stage 0.0 (TID 218) in 3007 ms on jg1-w-62.c.maclab-ukbb.internal (executor 2) (10/30000) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-93.c.maclab-ukbb.internal:46153 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-31.c.maclab-ukbb.internal:39935 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-59.c.maclab-ukbb.internal:37035 with 2.7 GB RAM, BlockManagerId(190, jg1-w-59.c.maclab-ukbb.internal, 37035, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-93.c.maclab-ukbb.internal:44171 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-29.c.maclab-ukbb.internal:44999 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.62:38820) with ID 184 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 184 has registered (new total is 196) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-19.c.maclab-ukbb.internal:39051 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 400.0 in stage 0.0 (TID 406, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 401.0 in stage 0.0 (TID 407, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.62:38818) with ID 159 2020-04-02 15:10:29 ExecutorAllocationManager: INFO: New executor 159 has registered (new total is 197) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 402.0 in stage 0.0 (TID 408, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 402, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 TaskSetManager: INFO: Starting task 403.0 in stage 0.0 (TID 409, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 403, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:29 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-59.c.maclab-ukbb.internal:40645 with 2.7 GB RAM, BlockManagerId(164, jg1-w-59.c.maclab-ukbb.internal, 40645, None) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-92.c.maclab-ukbb.internal:38573 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-39.c.maclab-ukbb.internal:39131 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-92.c.maclab-ukbb.internal:38371 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:29 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-31.c.maclab-ukbb.internal:45995 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-77.c.maclab-ukbb.internal:43391 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-77.c.maclab-ukbb.internal:39733 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-18.c.maclab-ukbb.internal:41847 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-70.c.maclab-ukbb.internal:37919 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-94.c.maclab-ukbb.internal:34785 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-17.c.maclab-ukbb.internal:39813 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 TaskSetManager: INFO: Starting task 404.0 in stage 0.0 (TID 410, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 404, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:30 TaskSetManager: INFO: Finished task 29.0 in stage 0.0 (TID 34) in 6640 ms on jg1-w-2.c.maclab-ukbb.internal (executor 79) (11/30000) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-65.c.maclab-ukbb.internal:43659 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-78.c.maclab-ukbb.internal:46397 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-7.c.maclab-ukbb.internal:46773 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-82.c.maclab-ukbb.internal:46589 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-17.c.maclab-ukbb.internal:34879 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-67.c.maclab-ukbb.internal:44843 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-65.c.maclab-ukbb.internal:46333 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-67.c.maclab-ukbb.internal:39707 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-36.c.maclab-ukbb.internal:41751 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-36.c.maclab-ukbb.internal:42733 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-66.c.maclab-ukbb.internal:46351 with 2.7 GB RAM, BlockManagerId(159, jg1-w-66.c.maclab-ukbb.internal, 46351, None) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-18.c.maclab-ukbb.internal:39743 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-70.c.maclab-ukbb.internal:34491 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 TaskSetManager: INFO: Starting task 405.0 in stage 0.0 (TID 411, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 405, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:30 TaskSetManager: WARN: Lost task 154.1 in stage 0.0 (TID 319, jg1-w-62.c.maclab-ukbb.internal, executor 2): is.hail.utils.HailException: cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64} at is.hail.utils.ErrorHandling$class.fatal(ErrorHandling.scala:9) at is.hail.utils.package$.fatal(package.scala:74) at is.hail.annotations.RegionValueBuilder.setMissing(RegionValueBuilder.scala:210) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:953) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:946) at is.hail.utils.FlipbookIterator$$anon$5.(FlipbookIterator.scala:176) at is.hail.utils.FlipbookIterator.map(FlipbookIterator.scala:174) at is.hail.utils.FlipbookIterator.map(FlipbookIterator.scala:145) at is.hail.rvd.RVD$$anonfun$26.apply(RVD.scala:946) at is.hail.rvd.RVD$$anonfun$26.apply(RVD.scala:942) at is.hail.rvd.KeyedRVD$$anonfun$orderedLeftJoinDistinct$1.apply(KeyedRVD.scala:147) at is.hail.rvd.KeyedRVD$$anonfun$orderedLeftJoinDistinct$1.apply(KeyedRVD.scala:146) at is.hail.sparkextras.ContextRDD$$anonfun$czipPartitions$1$$anonfun$apply$22.apply(ContextRDD.scala:340) at is.hail.sparkextras.ContextRDD$$anonfun$czipPartitions$1$$anonfun$apply$22.apply(ContextRDD.scala:340) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16$$anonfun$apply$17.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16$$anonfun$apply$17.apply(ContextRDD.scala:281) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:462) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:106) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:102) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:102) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:101) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:101) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:99) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:99) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:97) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:97) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:95) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$.writeSplitRegion(RichContextRDDRegionValue.scala:95) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:901) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:899) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310) at scala.collection.AbstractIterator.to(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289) at scala.collection.AbstractIterator.toArray(Iterator.scala:1334) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2020-04-02 15:10:30 TaskSetManager: INFO: Starting task 154.2 in stage 0.0 (TID 412, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:30 TaskSetManager: INFO: Lost task 1.1 in stage 0.0 (TID 8) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1] 2020-04-02 15:10:30 BlockManagerMasterEndpoint: INFO: Registering block manager jg1-w-66.c.maclab-ukbb.internal:33471 with 2.7 GB RAM, BlockManagerId(184, jg1-w-66.c.maclab-ukbb.internal, 33471, None) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-55.c.maclab-ukbb.internal:46807 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-14.c.maclab-ukbb.internal:42031 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-1.c.maclab-ukbb.internal:42103 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-25.c.maclab-ukbb.internal:41689 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-34.c.maclab-ukbb.internal:40847 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-55.c.maclab-ukbb.internal:42811 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-52.c.maclab-ukbb.internal:37873 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-34.c.maclab-ukbb.internal:33417 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-69.c.maclab-ukbb.internal:39191 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-94.c.maclab-ukbb.internal:40327 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-82.c.maclab-ukbb.internal:42273 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-3.c.maclab-ukbb.internal:39443 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-52.c.maclab-ukbb.internal:38619 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-41.c.maclab-ukbb.internal:40953 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-41.c.maclab-ukbb.internal:40599 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 TaskSetManager: INFO: Starting task 1.2 in stage 0.0 (TID 413, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:30 TaskSetManager: INFO: Finished task 36.0 in stage 0.0 (TID 41) in 6372 ms on jg1-w-0.c.maclab-ukbb.internal (executor 112) (12/30000) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-22.c.maclab-ukbb.internal:35925 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-61.c.maclab-ukbb.internal:38829 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-10.c.maclab-ukbb.internal:33053 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-22.c.maclab-ukbb.internal:41859 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-69.c.maclab-ukbb.internal:33471 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-88.c.maclab-ukbb.internal:42287 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-42.c.maclab-ukbb.internal:34507 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-58.c.maclab-ukbb.internal:42063 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-14.c.maclab-ukbb.internal:38859 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 TaskSetManager: INFO: Starting task 406.0 in stage 0.0 (TID 414, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:30 TaskSetManager: INFO: Finished task 28.0 in stage 0.0 (TID 33) in 7020 ms on jg1-w-2.c.maclab-ukbb.internal (executor 79) (13/30000) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-57.c.maclab-ukbb.internal:38723 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-57.c.maclab-ukbb.internal:39279 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-88.c.maclab-ukbb.internal:34081 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-9.c.maclab-ukbb.internal:38919 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-10.c.maclab-ukbb.internal:33969 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-27.c.maclab-ukbb.internal:38175 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 TaskSetManager: INFO: Starting task 407.0 in stage 0.0 (TID 415, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:30 TaskSetManager: INFO: Finished task 6.0 in stage 0.0 (TID 9) in 9633 ms on jg1-w-20.c.maclab-ukbb.internal (executor 6) (14/30000) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-42.c.maclab-ukbb.internal:40721 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-47.c.maclab-ukbb.internal:39845 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-47.c.maclab-ukbb.internal:40599 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-60.c.maclab-ukbb.internal:40341 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-72.c.maclab-ukbb.internal:35339 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-72.c.maclab-ukbb.internal:42307 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-59.c.maclab-ukbb.internal:40645 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-78.c.maclab-ukbb.internal:46397 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-58.c.maclab-ukbb.internal:33577 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-27.c.maclab-ukbb.internal:41459 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-25.c.maclab-ukbb.internal:42681 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-78.c.maclab-ukbb.internal:33983 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-74.c.maclab-ukbb.internal:41925 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-44.c.maclab-ukbb.internal:40089 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-7.c.maclab-ukbb.internal:37755 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-61.c.maclab-ukbb.internal:41337 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-74.c.maclab-ukbb.internal:41657 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-59.c.maclab-ukbb.internal:37035 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-5.c.maclab-ukbb.internal:34667 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-3.c.maclab-ukbb.internal:37597 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-64.c.maclab-ukbb.internal:43817 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-23.c.maclab-ukbb.internal:44757 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-64.c.maclab-ukbb.internal:35455 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-75.c.maclab-ukbb.internal:39423 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-23.c.maclab-ukbb.internal:45803 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-44.c.maclab-ukbb.internal:42125 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-75.c.maclab-ukbb.internal:42129 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-60.c.maclab-ukbb.internal:35569 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:30 TaskSetManager: INFO: Starting task 408.0 in stage 0.0 (TID 416, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:30 TaskSetManager: INFO: Finished task 37.0 in stage 0.0 (TID 42) in 7027 ms on jg1-w-0.c.maclab-ukbb.internal (executor 112) (15/30000) 2020-04-02 15:10:31 TaskSetManager: INFO: Starting task 409.0 in stage 0.0 (TID 417, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:31 TaskSetManager: INFO: Finished task 35.0 in stage 0.0 (TID 40) in 7147 ms on jg1-w-81.c.maclab-ukbb.internal (executor 111) (16/30000) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-22.c.maclab-ukbb.internal:41859 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-66.c.maclab-ukbb.internal:46351 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-38.c.maclab-ukbb.internal:36883 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-22.c.maclab-ukbb.internal:35925 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-54.c.maclab-ukbb.internal:42567 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-43.c.maclab-ukbb.internal:39461 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on jg1-w-66.c.maclab-ukbb.internal:33471 (size: 723.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-9.c.maclab-ukbb.internal:33835 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-38.c.maclab-ukbb.internal:40847 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-46.c.maclab-ukbb.internal:44887 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-96.c.maclab-ukbb.internal:35083 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-18.c.maclab-ukbb.internal:39743 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-17.c.maclab-ukbb.internal:34879 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-1.c.maclab-ukbb.internal:35189 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-21.c.maclab-ukbb.internal:34735 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 TaskSetManager: INFO: Starting task 410.0 in stage 0.0 (TID 418, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 410, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:31 TaskSetManager: INFO: Finished task 34.0 in stage 0.0 (TID 39) in 7299 ms on jg1-w-81.c.maclab-ukbb.internal (executor 111) (17/30000) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-48.c.maclab-ukbb.internal:35373 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-53.c.maclab-ukbb.internal:34513 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-51.c.maclab-ukbb.internal:37797 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-51.c.maclab-ukbb.internal:38039 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-48.c.maclab-ukbb.internal:34419 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-79.c.maclab-ukbb.internal:40051 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-21.c.maclab-ukbb.internal:45461 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-56.c.maclab-ukbb.internal:44123 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-53.c.maclab-ukbb.internal:39353 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-43.c.maclab-ukbb.internal:44457 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-79.c.maclab-ukbb.internal:36181 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-92.c.maclab-ukbb.internal:38573 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-36.c.maclab-ukbb.internal:42733 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-37.c.maclab-ukbb.internal:44391 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-50.c.maclab-ukbb.internal:39621 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-5.c.maclab-ukbb.internal:43941 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-14.c.maclab-ukbb.internal:42031 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-37.c.maclab-ukbb.internal:44731 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-18.c.maclab-ukbb.internal:41847 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-92.c.maclab-ukbb.internal:38371 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-46.c.maclab-ukbb.internal:42379 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-54.c.maclab-ukbb.internal:43337 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-5.c.maclab-ukbb.internal:34667 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-24.c.maclab-ukbb.internal:43327 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-34.c.maclab-ukbb.internal:40847 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-31.c.maclab-ukbb.internal:39935 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 TaskSetManager: INFO: Starting task 411.0 in stage 0.0 (TID 419, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 411, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:31 TaskSetManager: INFO: Lost task 31.0 in stage 0.0 (TID 36) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2] 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-56.c.maclab-ukbb.internal:43007 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-3.c.maclab-ukbb.internal:37597 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-45.c.maclab-ukbb.internal:39577 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-50.c.maclab-ukbb.internal:34241 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 TaskSetManager: INFO: Starting task 31.1 in stage 0.0 (TID 420, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-24.c.maclab-ukbb.internal:44893 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 TaskSetManager: INFO: Lost task 27.0 in stage 0.0 (TID 32) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 3] 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-45.c.maclab-ukbb.internal:32869 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-26.c.maclab-ukbb.internal:44151 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-55.c.maclab-ukbb.internal:42811 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-4.c.maclab-ukbb.internal:45883 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 TaskSetManager: INFO: Starting task 27.1 in stage 0.0 (TID 421, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:31 TaskSetManager: INFO: Finished task 26.0 in stage 0.0 (TID 31) in 8180 ms on jg1-w-62.c.maclab-ukbb.internal (executor 60) (18/30000) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-96.c.maclab-ukbb.internal:45841 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-17.c.maclab-ukbb.internal:39813 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-76.c.maclab-ukbb.internal:42155 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-55.c.maclab-ukbb.internal:46807 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-80.c.maclab-ukbb.internal:37651 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-86.c.maclab-ukbb.internal:42407 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-40.c.maclab-ukbb.internal:35481 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-42.c.maclab-ukbb.internal:40721 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 TaskSetManager: INFO: Starting task 412.0 in stage 0.0 (TID 422, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 412, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:31 TaskSetManager: INFO: Finished task 313.0 in stage 0.0 (TID 318) in 3129 ms on jg1-w-29.c.maclab-ukbb.internal (executor 1) (19/30000) 2020-04-02 15:10:31 TaskSetManager: INFO: Starting task 413.0 in stage 0.0 (TID 423, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 413, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:31 TaskSetManager: INFO: Finished task 8.0 in stage 0.0 (TID 11) in 10722 ms on jg1-w-20.c.maclab-ukbb.internal (executor 3) (20/30000) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-34.c.maclab-ukbb.internal:33417 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-31.c.maclab-ukbb.internal:45995 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-86.c.maclab-ukbb.internal:39813 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-80.c.maclab-ukbb.internal:43987 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-76.c.maclab-ukbb.internal:41885 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-28.c.maclab-ukbb.internal:38293 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-26.c.maclab-ukbb.internal:44731 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-3.c.maclab-ukbb.internal:39443 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-28.c.maclab-ukbb.internal:42563 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 TaskSetManager: INFO: Starting task 414.0 in stage 0.0 (TID 424, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:31 TaskSetManager: INFO: Lost task 399.0 in stage 0.0 (TID 405) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 4] 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-40.c.maclab-ukbb.internal:42781 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-8.c.maclab-ukbb.internal:42721 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-49.c.maclab-ukbb.internal:43565 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-14.c.maclab-ukbb.internal:38859 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-1.c.maclab-ukbb.internal:35189 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-36.c.maclab-ukbb.internal:41751 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-10.c.maclab-ukbb.internal:33969 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-27.c.maclab-ukbb.internal:41459 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 TaskSetManager: INFO: Starting task 399.1 in stage 0.0 (TID 425, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:31 TaskSetManager: INFO: Finished task 7.0 in stage 0.0 (TID 10) in 10896 ms on jg1-w-20.c.maclab-ukbb.internal (executor 3) (21/30000) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-9.c.maclab-ukbb.internal:33835 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-13.c.maclab-ukbb.internal:43977 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-10.c.maclab-ukbb.internal:33053 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-72.c.maclab-ukbb.internal:42307 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-88.c.maclab-ukbb.internal:34081 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-5.c.maclab-ukbb.internal:43941 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-13.c.maclab-ukbb.internal:45751 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-72.c.maclab-ukbb.internal:35339 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-49.c.maclab-ukbb.internal:46157 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-42.c.maclab-ukbb.internal:34507 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-59.c.maclab-ukbb.internal:40645 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 TaskSetManager: INFO: Starting task 415.0 in stage 0.0 (TID 426, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:31 TaskSetManager: INFO: Lost task 0.2 in stage 0.0 (TID 17) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 5] 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-35.c.maclab-ukbb.internal:45861 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-57.c.maclab-ukbb.internal:39279 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-41.c.maclab-ukbb.internal:40953 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-35.c.maclab-ukbb.internal:33321 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-57.c.maclab-ukbb.internal:38723 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-95.c.maclab-ukbb.internal:36635 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-74.c.maclab-ukbb.internal:41657 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-74.c.maclab-ukbb.internal:41925 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-90.c.maclab-ukbb.internal:41817 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-30.c.maclab-ukbb.internal:43071 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:31 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-37.c.maclab-ukbb.internal:44391 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-88.c.maclab-ukbb.internal:42287 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-50.c.maclab-ukbb.internal:39621 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-68.c.maclab-ukbb.internal:33213 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-4.c.maclab-ukbb.internal:39491 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 0.3 in stage 0.0 (TID 427, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Finished task 12.0 in stage 0.0 (TID 15) in 9975 ms on jg1-w-65.c.maclab-ukbb.internal (executor 4) (22/30000) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-89.c.maclab-ukbb.internal:35183 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-89.c.maclab-ukbb.internal:40005 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-50.c.maclab-ukbb.internal:34241 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-90.c.maclab-ukbb.internal:46775 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-58.c.maclab-ukbb.internal:42063 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-56.c.maclab-ukbb.internal:44123 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-1.c.maclab-ukbb.internal:42103 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 416.0 in stage 0.0 (TID 428, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 416, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Lost task 1.2 in stage 0.0 (TID 413) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 6] 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-16.c.maclab-ukbb.internal:35981 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-7.c.maclab-ukbb.internal:46773 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-27.c.maclab-ukbb.internal:38175 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 1.3 in stage 0.0 (TID 429, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-71.c.maclab-ukbb.internal:43939 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Lost task 154.2 in stage 0.0 (TID 412) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 7] 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-56.c.maclab-ukbb.internal:43007 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-16.c.maclab-ukbb.internal:44101 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-9.c.maclab-ukbb.internal:38919 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-68.c.maclab-ukbb.internal:43915 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-95.c.maclab-ukbb.internal:35565 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-47.c.maclab-ukbb.internal:39845 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-80.c.maclab-ukbb.internal:37651 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 154.3 in stage 0.0 (TID 430, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Finished task 11.0 in stage 0.0 (TID 14) in 10093 ms on jg1-w-65.c.maclab-ukbb.internal (executor 4) (23/30000) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-58.c.maclab-ukbb.internal:33577 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-91.c.maclab-ukbb.internal:41141 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-80.c.maclab-ukbb.internal:43987 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-37.c.maclab-ukbb.internal:44731 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-30.c.maclab-ukbb.internal:45787 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-59.c.maclab-ukbb.internal:37035 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-63.c.maclab-ukbb.internal:44371 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-83.c.maclab-ukbb.internal:46767 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-26.c.maclab-ukbb.internal:44151 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-41.c.maclab-ukbb.internal:40599 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-60.c.maclab-ukbb.internal:40341 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-25.c.maclab-ukbb.internal:41689 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 417.0 in stage 0.0 (TID 431, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 417, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Finished task 30.0 in stage 0.0 (TID 35) in 8728 ms on jg1-w-29.c.maclab-ukbb.internal (executor 58) (24/30000) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 418.0 in stage 0.0 (TID 432, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Finished task 404.0 in stage 0.0 (TID 410) in 2172 ms on jg1-w-2.c.maclab-ukbb.internal (executor 79) (25/30000) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 419.0 in stage 0.0 (TID 433, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 419, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Lost task 20.0 in stage 0.0 (TID 24) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 8] 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-91.c.maclab-ukbb.internal:34825 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-63.c.maclab-ukbb.internal:37475 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-11.c.maclab-ukbb.internal:35881 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-26.c.maclab-ukbb.internal:44731 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-71.c.maclab-ukbb.internal:41555 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-3.c.maclab-ukbb.internal:39443 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-97.c.maclab-ukbb.internal:40065 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-83.c.maclab-ukbb.internal:41789 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 20.1 in stage 0.0 (TID 434, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Finished task 9.0 in stage 0.0 (TID 12) in 10264 ms on jg1-w-65.c.maclab-ukbb.internal (executor 7) (26/30000) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-8.c.maclab-ukbb.internal:45003 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 420.0 in stage 0.0 (TID 435, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 420, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-98.c.maclab-ukbb.internal:33635 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Lost task 406.0 in stage 0.0 (TID 414) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 9] 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-47.c.maclab-ukbb.internal:40599 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-7.c.maclab-ukbb.internal:37755 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-85.c.maclab-ukbb.internal:37977 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-98.c.maclab-ukbb.internal:41397 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-99.c.maclab-ukbb.internal:39871 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-15.c.maclab-ukbb.internal:36001 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 406.1 in stage 0.0 (TID 436, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Finished task 14.0 in stage 0.0 (TID 18) in 9903 ms on jg1-w-78.c.maclab-ukbb.internal (executor 5) (27/30000) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-73.c.maclab-ukbb.internal:46123 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-15.c.maclab-ukbb.internal:46459 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-73.c.maclab-ukbb.internal:40759 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-99.c.maclab-ukbb.internal:39857 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-85.c.maclab-ukbb.internal:39213 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-97.c.maclab-ukbb.internal:37155 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-1.c.maclab-ukbb.internal:42103 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-23.c.maclab-ukbb.internal:45803 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-32.c.maclab-ukbb.internal:43527 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-32.c.maclab-ukbb.internal:39093 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-87.c.maclab-ukbb.internal:35653 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-11.c.maclab-ukbb.internal:37639 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-6.c.maclab-ukbb.internal:39431 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-25.c.maclab-ukbb.internal:42681 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-64.c.maclab-ukbb.internal:43817 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-75.c.maclab-ukbb.internal:39423 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-64.c.maclab-ukbb.internal:35455 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 421.0 in stage 0.0 (TID 437, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 421, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Finished task 15.0 in stage 0.0 (TID 19) in 10152 ms on jg1-w-78.c.maclab-ukbb.internal (executor 10) (28/30000) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-6.c.maclab-ukbb.internal:44497 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-23.c.maclab-ukbb.internal:44757 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-7.c.maclab-ukbb.internal:46773 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-87.c.maclab-ukbb.internal:46771 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-9.c.maclab-ukbb.internal:38919 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-66.c.maclab-ukbb.internal:46351 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-60.c.maclab-ukbb.internal:35569 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 422.0 in stage 0.0 (TID 438, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Lost task 405.0 in stage 0.0 (TID 411) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 10] 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-33.c.maclab-ukbb.internal:41519 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-93.c.maclab-ukbb.internal:44171 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 405.1 in stage 0.0 (TID 439, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 405, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Lost task 53.0 in stage 0.0 (TID 58) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 11] 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-12.c.maclab-ukbb.internal:45865 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-12.c.maclab-ukbb.internal:33639 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 TaskSetManager: INFO: Starting task 53.1 in stage 0.0 (TID 440, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:32 TaskSetManager: INFO: Lost task 52.0 in stage 0.0 (TID 57) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 12] 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-19.c.maclab-ukbb.internal:34759 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-19.c.maclab-ukbb.internal:39051 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-21.c.maclab-ukbb.internal:34735 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-39.c.maclab-ukbb.internal:39131 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-7.c.maclab-ukbb.internal:37755 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-93.c.maclab-ukbb.internal:46153 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-48.c.maclab-ukbb.internal:35373 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-39.c.maclab-ukbb.internal:34709 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-21.c.maclab-ukbb.internal:45461 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-53.c.maclab-ukbb.internal:34513 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-48.c.maclab-ukbb.internal:34419 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-77.c.maclab-ukbb.internal:39733 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-84.c.maclab-ukbb.internal:38213 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-33.c.maclab-ukbb.internal:43073 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:32 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-77.c.maclab-ukbb.internal:43391 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-25.c.maclab-ukbb.internal:41689 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-75.c.maclab-ukbb.internal:42129 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-25.c.maclab-ukbb.internal:42681 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 52.1 in stage 0.0 (TID 441, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Finished task 18.0 in stage 0.0 (TID 22) in 10069 ms on jg1-w-22.c.maclab-ukbb.internal (executor 11) (29/30000) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 423.0 in stage 0.0 (TID 442, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 409.0 in stage 0.0 (TID 417) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 13] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-79.c.maclab-ukbb.internal:36181 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-94.c.maclab-ukbb.internal:40327 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-79.c.maclab-ukbb.internal:40051 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-60.c.maclab-ukbb.internal:40341 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-94.c.maclab-ukbb.internal:34785 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-23.c.maclab-ukbb.internal:45803 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on jg1-w-66.c.maclab-ukbb.internal:33471 (size: 28.2 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-51.c.maclab-ukbb.internal:38039 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-67.c.maclab-ukbb.internal:44843 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-75.c.maclab-ukbb.internal:39423 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-64.c.maclab-ukbb.internal:43817 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 409.1 in stage 0.0 (TID 443, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 63.0 in stage 0.0 (TID 68) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 14] 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 63.1 in stage 0.0 (TID 444, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Finished task 394.0 in stage 0.0 (TID 400) in 3527 ms on jg1-w-29.c.maclab-ukbb.internal (executor 1) (30/30000) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-51.c.maclab-ukbb.internal:37797 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-84.c.maclab-ukbb.internal:42505 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-38.c.maclab-ukbb.internal:36883 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 424.0 in stage 0.0 (TID 445, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 424, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Finished task 16.0 in stage 0.0 (TID 20) in 10717 ms on jg1-w-78.c.maclab-ukbb.internal (executor 10) (31/30000) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-52.c.maclab-ukbb.internal:38619 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-64.c.maclab-ukbb.internal:35455 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-70.c.maclab-ukbb.internal:37919 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 425.0 in stage 0.0 (TID 446, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-38.c.maclab-ukbb.internal:40847 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Finished task 40.0 in stage 0.0 (TID 45) in 9230 ms on jg1-w-5.c.maclab-ukbb.internal (executor 76) (32/30000) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-76.c.maclab-ukbb.internal:41885 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 426.0 in stage 0.0 (TID 447, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 58.0 in stage 0.0 (TID 63) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 15] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-82.c.maclab-ukbb.internal:46589 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-53.c.maclab-ukbb.internal:39353 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-70.c.maclab-ukbb.internal:34491 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-4.c.maclab-ukbb.internal:45883 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 58.1 in stage 0.0 (TID 448, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 407.0 in stage 0.0 (TID 415) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 16] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-45.c.maclab-ukbb.internal:39577 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-82.c.maclab-ukbb.internal:42273 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-76.c.maclab-ukbb.internal:42155 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-60.c.maclab-ukbb.internal:35569 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-23.c.maclab-ukbb.internal:44757 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-52.c.maclab-ukbb.internal:37873 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-67.c.maclab-ukbb.internal:39707 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-69.c.maclab-ukbb.internal:33471 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 407.1 in stage 0.0 (TID 449, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 408.0 in stage 0.0 (TID 416) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 17] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-69.c.maclab-ukbb.internal:39191 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-45.c.maclab-ukbb.internal:32869 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-21.c.maclab-ukbb.internal:34735 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-40.c.maclab-ukbb.internal:35481 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 408.1 in stage 0.0 (TID 450, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 399.1 in stage 0.0 (TID 425) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 18] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-86.c.maclab-ukbb.internal:39813 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 399.2 in stage 0.0 (TID 451, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Finished task 33.0 in stage 0.0 (TID 38) in 9704 ms on jg1-w-3.c.maclab-ukbb.internal (executor 84) (33/30000) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-75.c.maclab-ukbb.internal:42129 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-8.c.maclab-ukbb.internal:42721 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-30.c.maclab-ukbb.internal:43071 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-13.c.maclab-ukbb.internal:43977 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-79.c.maclab-ukbb.internal:36181 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-86.c.maclab-ukbb.internal:42407 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 427.0 in stage 0.0 (TID 452, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 54.0 in stage 0.0 (TID 59) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 19] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-48.c.maclab-ukbb.internal:35373 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 54.1 in stage 0.0 (TID 453, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 54, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 64.0 in stage 0.0 (TID 69) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 20] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-4.c.maclab-ukbb.internal:39491 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 64.1 in stage 0.0 (TID 454, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 31.1 in stage 0.0 (TID 420) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 21] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-13.c.maclab-ukbb.internal:45751 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 31.2 in stage 0.0 (TID 455, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 3.2 in stage 0.0 (TID 27) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 22] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-28.c.maclab-ukbb.internal:38293 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-53.c.maclab-ukbb.internal:34513 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-95.c.maclab-ukbb.internal:36635 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-21.c.maclab-ukbb.internal:45461 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-48.c.maclab-ukbb.internal:34419 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-40.c.maclab-ukbb.internal:42781 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-51.c.maclab-ukbb.internal:38039 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 3.3 in stage 0.0 (TID 456, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Finished task 410.0 in stage 0.0 (TID 418) in 2532 ms on jg1-w-81.c.maclab-ukbb.internal (executor 111) (34/30000) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-61.c.maclab-ukbb.internal:41337 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-28.c.maclab-ukbb.internal:42563 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 428.0 in stage 0.0 (TID 457, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 41.0 in stage 0.0 (TID 46) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 23] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-53.c.maclab-ukbb.internal:39353 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-51.c.maclab-ukbb.internal:37797 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-95.c.maclab-ukbb.internal:35565 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-79.c.maclab-ukbb.internal:40051 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 41.1 in stage 0.0 (TID 458, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 39.0 in stage 0.0 (TID 44) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 24] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-91.c.maclab-ukbb.internal:41141 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 39.1 in stage 0.0 (TID 459, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 47.0 in stage 0.0 (TID 52) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 25] 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-68.c.maclab-ukbb.internal:33213 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 47.1 in stage 0.0 (TID 460, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 1.3 in stage 0.0 (TID 429) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 26] 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 1.4 in stage 0.0 (TID 461, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Finished task 32.0 in stage 0.0 (TID 37) in 9959 ms on jg1-w-3.c.maclab-ukbb.internal (executor 84) (35/30000) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-38.c.maclab-ukbb.internal:36883 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-38.c.maclab-ukbb.internal:40847 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-44.c.maclab-ukbb.internal:40089 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-71.c.maclab-ukbb.internal:43939 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-49.c.maclab-ukbb.internal:43565 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-44.c.maclab-ukbb.internal:42125 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-30.c.maclab-ukbb.internal:45787 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 429.0 in stage 0.0 (TID 462, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 429, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 19.0 in stage 0.0 (TID 23) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 27] 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 19.1 in stage 0.0 (TID 463, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Finished task 59.0 in stage 0.0 (TID 64) in 9642 ms on jg1-w-50.c.maclab-ukbb.internal (executor 19) (36/30000) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-4.c.maclab-ukbb.internal:45883 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-89.c.maclab-ukbb.internal:40005 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-68.c.maclab-ukbb.internal:43915 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 430.0 in stage 0.0 (TID 464, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 430, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Lost task 50.0 in stage 0.0 (TID 55) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 28] 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 50.1 in stage 0.0 (TID 465, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Finished task 23.0 in stage 0.0 (TID 28) in 10599 ms on jg1-w-37.c.maclab-ukbb.internal (executor 12) (37/30000) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-61.c.maclab-ukbb.internal:38829 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-35.c.maclab-ukbb.internal:33321 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-89.c.maclab-ukbb.internal:35183 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-45.c.maclab-ukbb.internal:39577 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 431.0 in stage 0.0 (TID 466, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 431, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Finished task 10.0 in stage 0.0 (TID 13) in 11886 ms on jg1-w-65.c.maclab-ukbb.internal (executor 7) (38/30000) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-8.c.maclab-ukbb.internal:45003 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-63.c.maclab-ukbb.internal:44371 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-16.c.maclab-ukbb.internal:44101 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-97.c.maclab-ukbb.internal:40065 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:33 TaskSetManager: INFO: Starting task 432.0 in stage 0.0 (TID 467, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 432, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:33 TaskSetManager: INFO: Finished task 42.0 in stage 0.0 (TID 47) in 9942 ms on jg1-w-56.c.maclab-ukbb.internal (executor 17) (39/30000) 2020-04-02 15:10:33 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-45.c.maclab-ukbb.internal:32869 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 433.0 in stage 0.0 (TID 468, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 433, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 38.0 in stage 0.0 (TID 43) in 10005 ms on jg1-w-56.c.maclab-ukbb.internal (executor 22) (40/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 434.0 in stage 0.0 (TID 469, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 434, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 51.0 in stage 0.0 (TID 56) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 29] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-35.c.maclab-ukbb.internal:45861 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-11.c.maclab-ukbb.internal:35881 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 51.1 in stage 0.0 (TID 470, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 70.0 in stage 0.0 (TID 75) in 9088 ms on jg1-w-3.c.maclab-ukbb.internal (executor 125) (41/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 435.0 in stage 0.0 (TID 471, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 49.0 in stage 0.0 (TID 54) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 30] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-76.c.maclab-ukbb.internal:42155 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-71.c.maclab-ukbb.internal:41555 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 49.1 in stage 0.0 (TID 472, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 412.0 in stage 0.0 (TID 422) in 2451 ms on jg1-w-29.c.maclab-ukbb.internal (executor 1) (42/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 436.0 in stage 0.0 (TID 473, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 436, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 154.3 in stage 0.0 (TID 430) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 31] 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 154.4 in stage 0.0 (TID 474, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 0.3 in stage 0.0 (TID 427) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 32] 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 0.4 in stage 0.0 (TID 475, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 411.0 in stage 0.0 (TID 419) in 2608 ms on jg1-w-29.c.maclab-ukbb.internal (executor 58) (43/30000) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-30.c.maclab-ukbb.internal:43071 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-4.c.maclab-ukbb.internal:39491 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-13.c.maclab-ukbb.internal:43977 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-63.c.maclab-ukbb.internal:37475 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-16.c.maclab-ukbb.internal:35981 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-76.c.maclab-ukbb.internal:41885 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-40.c.maclab-ukbb.internal:35481 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-73.c.maclab-ukbb.internal:46123 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-97.c.maclab-ukbb.internal:37155 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-15.c.maclab-ukbb.internal:46459 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 437.0 in stage 0.0 (TID 476, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 437, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 418.0 in stage 0.0 (TID 432) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 33] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-83.c.maclab-ukbb.internal:46767 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-86.c.maclab-ukbb.internal:39813 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 418.1 in stage 0.0 (TID 477, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 438.0 in stage 0.0 (TID 478, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 438, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 24.0 in stage 0.0 (TID 29) in 10816 ms on jg1-w-37.c.maclab-ukbb.internal (executor 9) (44/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 25.0 in stage 0.0 (TID 30) in 10816 ms on jg1-w-37.c.maclab-ukbb.internal (executor 9) (45/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 439.0 in stage 0.0 (TID 479, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 71.0 in stage 0.0 (TID 76) in 9176 ms on jg1-w-1.c.maclab-ukbb.internal (executor 123) (46/30000) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-83.c.maclab-ukbb.internal:41789 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-98.c.maclab-ukbb.internal:33635 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-8.c.maclab-ukbb.internal:42721 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 440.0 in stage 0.0 (TID 480, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 440, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 27.1 in stage 0.0 (TID 421) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 34] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-28.c.maclab-ukbb.internal:38293 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-91.c.maclab-ukbb.internal:34825 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-86.c.maclab-ukbb.internal:42407 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 27.2 in stage 0.0 (TID 481, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 48.0 in stage 0.0 (TID 53) in 10127 ms on jg1-w-26.c.maclab-ukbb.internal (executor 16) (47/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 441.0 in stage 0.0 (TID 482, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 416.0 in stage 0.0 (TID 428) in 2159 ms on jg1-w-0.c.maclab-ukbb.internal (executor 112) (48/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 442.0 in stage 0.0 (TID 483, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 81.0 in stage 0.0 (TID 86) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 35] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-49.c.maclab-ukbb.internal:46157 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-98.c.maclab-ukbb.internal:41397 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-46.c.maclab-ukbb.internal:42379 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-73.c.maclab-ukbb.internal:40759 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 81.1 in stage 0.0 (TID 484, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 75.0 in stage 0.0 (TID 80) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 36] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-40.c.maclab-ukbb.internal:42781 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-18.c.maclab-ukbb.internal:41847 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 75.1 in stage 0.0 (TID 485, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 56.0 in stage 0.0 (TID 61) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 37] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-13.c.maclab-ukbb.internal:45751 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-92.c.maclab-ukbb.internal:38371 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-19.c.maclab-ukbb.internal:34759 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-46.c.maclab-ukbb.internal:44887 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-15.c.maclab-ukbb.internal:36001 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 56.1 in stage 0.0 (TID 486, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-90.c.maclab-ukbb.internal:41817 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-99.c.maclab-ukbb.internal:39871 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 443.0 in stage 0.0 (TID 487, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-92.c.maclab-ukbb.internal:38573 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 444.0 in stage 0.0 (TID 488, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-11.c.maclab-ukbb.internal:37639 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-32.c.maclab-ukbb.internal:43527 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 445.0 in stage 0.0 (TID 489, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 445, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-32.c.maclab-ukbb.internal:39093 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-90.c.maclab-ukbb.internal:46775 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-87.c.maclab-ukbb.internal:35653 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-6.c.maclab-ukbb.internal:39431 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 446.0 in stage 0.0 (TID 490, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 446, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 69.0 in stage 0.0 (TID 74) in 9583 ms on jg1-w-3.c.maclab-ukbb.internal (executor 125) (49/30000) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-18.c.maclab-ukbb.internal:39743 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 63.1 in stage 0.0 (TID 444) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 38] 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 57.0 in stage 0.0 (TID 62) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 39] 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 21.0 in stage 0.0 (TID 25) in 11531 ms on jg1-w-22.c.maclab-ukbb.internal (executor 8) (50/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 61.0 in stage 0.0 (TID 66) in 10185 ms on jg1-w-7.c.maclab-ukbb.internal (executor 78) (51/30000) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-30.c.maclab-ukbb.internal:45787 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-8.c.maclab-ukbb.internal:45003 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-28.c.maclab-ukbb.internal:42563 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-95.c.maclab-ukbb.internal:36635 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-91.c.maclab-ukbb.internal:41141 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-71.c.maclab-ukbb.internal:41555 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-71.c.maclab-ukbb.internal:43939 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-24.c.maclab-ukbb.internal:43327 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-24.c.maclab-ukbb.internal:44893 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-68.c.maclab-ukbb.internal:43915 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-49.c.maclab-ukbb.internal:43565 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-89.c.maclab-ukbb.internal:40005 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-35.c.maclab-ukbb.internal:33321 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-95.c.maclab-ukbb.internal:35565 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 57.1 in stage 0.0 (TID 491, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 415.0 in stage 0.0 (TID 426) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 40] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-89.c.maclab-ukbb.internal:35183 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-87.c.maclab-ukbb.internal:46771 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-68.c.maclab-ukbb.internal:33213 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-35.c.maclab-ukbb.internal:45861 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-93.c.maclab-ukbb.internal:44171 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-14.c.maclab-ukbb.internal:42031 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-16.c.maclab-ukbb.internal:44101 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 415.1 in stage 0.0 (TID 492, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 45.0 in stage 0.0 (TID 50) in 10530 ms on jg1-w-80.c.maclab-ukbb.internal (executor 18) (52/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 63.2 in stage 0.0 (TID 493, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 44.0 in stage 0.0 (TID 49) in 10532 ms on jg1-w-80.c.maclab-ukbb.internal (executor 18) (53/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 447.0 in stage 0.0 (TID 494, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 447, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 423.0 in stage 0.0 (TID 442) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 41] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-93.c.maclab-ukbb.internal:46153 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 423.1 in stage 0.0 (TID 495, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 20.1 in stage 0.0 (TID 434) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 42] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-97.c.maclab-ukbb.internal:37155 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-99.c.maclab-ukbb.internal:39857 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-11.c.maclab-ukbb.internal:35881 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-17.c.maclab-ukbb.internal:39813 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-16.c.maclab-ukbb.internal:35981 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-19.c.maclab-ukbb.internal:39051 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 20.2 in stage 0.0 (TID 496, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 62.0 in stage 0.0 (TID 67) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 43] 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 62.1 in stage 0.0 (TID 497, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 52.1 in stage 0.0 (TID 441) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 44] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-17.c.maclab-ukbb.internal:34879 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-85.c.maclab-ukbb.internal:37977 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-34.c.maclab-ukbb.internal:33417 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-15.c.maclab-ukbb.internal:46459 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-63.c.maclab-ukbb.internal:44371 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-31.c.maclab-ukbb.internal:45995 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-83.c.maclab-ukbb.internal:46767 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 52.2 in stage 0.0 (TID 498, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 46.0 in stage 0.0 (TID 51) in 10611 ms on jg1-w-80.c.maclab-ukbb.internal (executor 13) (54/30000) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-63.c.maclab-ukbb.internal:37475 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-55.c.maclab-ukbb.internal:42811 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-91.c.maclab-ukbb.internal:34825 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-83.c.maclab-ukbb.internal:41789 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 448.0 in stage 0.0 (TID 499, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 448, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 72.0 in stage 0.0 (TID 77) in 9772 ms on jg1-w-1.c.maclab-ukbb.internal (executor 123) (55/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 449.0 in stage 0.0 (TID 500, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 58.1 in stage 0.0 (TID 448) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 45] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-43.c.maclab-ukbb.internal:44457 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-33.c.maclab-ukbb.internal:41519 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 58.2 in stage 0.0 (TID 501, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 115.0 in stage 0.0 (TID 120) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 46] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-33.c.maclab-ukbb.internal:43073 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 115.1 in stage 0.0 (TID 502, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 115, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 417.0 in stage 0.0 (TID 431) in 2537 ms on jg1-w-29.c.maclab-ukbb.internal (executor 58) (56/30000) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-39.c.maclab-ukbb.internal:39131 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 450.0 in stage 0.0 (TID 503, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 450, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 43.0 in stage 0.0 (TID 48) in 10728 ms on jg1-w-56.c.maclab-ukbb.internal (executor 17) (57/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 451.0 in stage 0.0 (TID 504, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 451, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 422.0 in stage 0.0 (TID 438) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 47] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-49.c.maclab-ukbb.internal:46157 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-97.c.maclab-ukbb.internal:40065 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 422.1 in stage 0.0 (TID 505, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 91.0 in stage 0.0 (TID 96) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 48] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-98.c.maclab-ukbb.internal:33635 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-42.c.maclab-ukbb.internal:40721 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-98.c.maclab-ukbb.internal:41397 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-14.c.maclab-ukbb.internal:38859 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-94.c.maclab-ukbb.internal:40327 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 91.1 in stage 0.0 (TID 506, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 53.1 in stage 0.0 (TID 440) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 49] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-10.c.maclab-ukbb.internal:33053 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 53.2 in stage 0.0 (TID 507, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 73.0 in stage 0.0 (TID 78) in 9869 ms on jg1-w-25.c.maclab-ukbb.internal (executor 42) (58/30000) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-10.c.maclab-ukbb.internal:33969 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-36.c.maclab-ukbb.internal:42733 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-73.c.maclab-ukbb.internal:40759 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-6.c.maclab-ukbb.internal:44497 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-70.c.maclab-ukbb.internal:37919 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-85.c.maclab-ukbb.internal:39213 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-42.c.maclab-ukbb.internal:34507 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-73.c.maclab-ukbb.internal:46123 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-88.c.maclab-ukbb.internal:42287 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 452.0 in stage 0.0 (TID 508, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 452, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 406.1 in stage 0.0 (TID 436) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 50] 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-34.c.maclab-ukbb.internal:40847 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-88.c.maclab-ukbb.internal:34081 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-43.c.maclab-ukbb.internal:39461 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-39.c.maclab-ukbb.internal:34709 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 406.2 in stage 0.0 (TID 509, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 65.0 in stage 0.0 (TID 70) in 10191 ms on jg1-w-60.c.maclab-ukbb.internal (executor 20) (59/30000) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-15.c.maclab-ukbb.internal:36001 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-94.c.maclab-ukbb.internal:34785 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-36.c.maclab-ukbb.internal:41751 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-55.c.maclab-ukbb.internal:46807 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-77.c.maclab-ukbb.internal:39733 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-77.c.maclab-ukbb.internal:43391 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-31.c.maclab-ukbb.internal:39935 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-72.c.maclab-ukbb.internal:35339 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 453.0 in stage 0.0 (TID 510, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 453, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 158.0 in stage 0.0 (TID 163) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 51] 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 158.1 in stage 0.0 (TID 511, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Finished task 66.0 in stage 0.0 (TID 71) in 10231 ms on jg1-w-60.c.maclab-ukbb.internal (executor 20) (60/30000) 2020-04-02 15:10:34 TaskSetManager: INFO: Starting task 454.0 in stage 0.0 (TID 512, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 454, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:34 TaskSetManager: INFO: Lost task 157.0 in stage 0.0 (TID 162) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 52] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-84.c.maclab-ukbb.internal:38213 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-72.c.maclab-ukbb.internal:42307 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-19.c.maclab-ukbb.internal:34759 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-11.c.maclab-ukbb.internal:37639 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-67.c.maclab-ukbb.internal:44843 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 157.1 in stage 0.0 (TID 513, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-27.c.maclab-ukbb.internal:38175 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 420.0 in stage 0.0 (TID 435) in 2717 ms on jg1-w-2.c.maclab-ukbb.internal (executor 79) (61/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-52.c.maclab-ukbb.internal:38619 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 455.0 in stage 0.0 (TID 514, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 455, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 116.0 in stage 0.0 (TID 121) in 9317 ms on jg1-w-64.c.maclab-ukbb.internal (executor 40) (62/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-12.c.maclab-ukbb.internal:33639 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-59.c.maclab-ukbb.internal:40645 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-52.c.maclab-ukbb.internal:37873 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-32.c.maclab-ukbb.internal:43527 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-84.c.maclab-ukbb.internal:42505 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-32.c.maclab-ukbb.internal:39093 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-57.c.maclab-ukbb.internal:38723 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-59.c.maclab-ukbb.internal:37035 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-90.c.maclab-ukbb.internal:46775 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 456.0 in stage 0.0 (TID 515, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 456, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 78.0 in stage 0.0 (TID 83) in 10124 ms on jg1-w-9.c.maclab-ukbb.internal (executor 121) (63/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-57.c.maclab-ukbb.internal:39279 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-54.c.maclab-ukbb.internal:43337 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-99.c.maclab-ukbb.internal:39871 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 457.0 in stage 0.0 (TID 516, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 457, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 77.0 in stage 0.0 (TID 82) in 10143 ms on jg1-w-9.c.maclab-ukbb.internal (executor 121) (64/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-99.c.maclab-ukbb.internal:39857 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-96.c.maclab-ukbb.internal:35083 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 458.0 in stage 0.0 (TID 517, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 458, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 419.0 in stage 0.0 (TID 433) in 2940 ms on jg1-w-22.c.maclab-ukbb.internal (executor 8) (65/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-90.c.maclab-ukbb.internal:41817 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 459.0 in stage 0.0 (TID 518, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 167.0 in stage 0.0 (TID 172) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 53] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-27.c.maclab-ukbb.internal:41459 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-87.c.maclab-ukbb.internal:46771 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-12.c.maclab-ukbb.internal:45865 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 167.1 in stage 0.0 (TID 519, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 114.0 in stage 0.0 (TID 119) in 9468 ms on jg1-w-64.c.maclab-ukbb.internal (executor 70) (66/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-70.c.maclab-ukbb.internal:34491 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 460.0 in stage 0.0 (TID 520, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 408.1 in stage 0.0 (TID 450) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 54] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 408.2 in stage 0.0 (TID 521, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 195.0 in stage 0.0 (TID 200) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 55] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-87.c.maclab-ukbb.internal:35653 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 195.1 in stage 0.0 (TID 522, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 156.0 in stage 0.0 (TID 161) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 56] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 156.1 in stage 0.0 (TID 523, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 68.0 in stage 0.0 (TID 73) in 10490 ms on jg1-w-60.c.maclab-ukbb.internal (executor 15) (67/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-19.c.maclab-ukbb.internal:39051 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 461.0 in stage 0.0 (TID 524, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 461, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 84.0 in stage 0.0 (TID 89) in 9947 ms on jg1-w-23.c.maclab-ukbb.internal (executor 46) (68/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-54.c.maclab-ukbb.internal:42567 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-74.c.maclab-ukbb.internal:41925 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-74.c.maclab-ukbb.internal:41657 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-96.c.maclab-ukbb.internal:45841 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-82.c.maclab-ukbb.internal:46589 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-82.c.maclab-ukbb.internal:42273 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-67.c.maclab-ukbb.internal:39707 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-85.c.maclab-ukbb.internal:37977 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 462.0 in stage 0.0 (TID 525, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 462, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 409.1 in stage 0.0 (TID 443) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 57] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 409.2 in stage 0.0 (TID 526, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 463.0 in stage 0.0 (TID 527, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 463, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 426.0 in stage 0.0 (TID 447) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 58] 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 87.0 in stage 0.0 (TID 92) in 9880 ms on jg1-w-75.c.maclab-ukbb.internal (executor 33) (69/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-69.c.maclab-ukbb.internal:39191 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 426.1 in stage 0.0 (TID 528, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 76.0 in stage 0.0 (TID 81) in 10390 ms on jg1-w-25.c.maclab-ukbb.internal (executor 23) (70/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 464.0 in stage 0.0 (TID 529, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 464, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 194.0 in stage 0.0 (TID 199) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 59] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-93.c.maclab-ukbb.internal:46153 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-33.c.maclab-ukbb.internal:43073 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-58.c.maclab-ukbb.internal:33577 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 194.1 in stage 0.0 (TID 530, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 106.0 in stage 0.0 (TID 111) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 60] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 106.1 in stage 0.0 (TID 531, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 187.0 in stage 0.0 (TID 192) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 61] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-61.c.maclab-ukbb.internal:38829 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 187.1 in stage 0.0 (TID 532, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 121.0 in stage 0.0 (TID 126) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 62] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-47.c.maclab-ukbb.internal:39845 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-47.c.maclab-ukbb.internal:40599 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 121.1 in stage 0.0 (TID 533, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 83.0 in stage 0.0 (TID 88) in 10146 ms on jg1-w-23.c.maclab-ukbb.internal (executor 46) (71/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 465.0 in stage 0.0 (TID 534, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 465, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 96.0 in stage 0.0 (TID 101) in 9902 ms on jg1-w-21.c.maclab-ukbb.internal (executor 47) (72/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-39.c.maclab-ukbb.internal:39131 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 466.0 in stage 0.0 (TID 535, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 466, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 80.0 in stage 0.0 (TID 85) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 63] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-33.c.maclab-ukbb.internal:41519 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-69.c.maclab-ukbb.internal:33471 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-85.c.maclab-ukbb.internal:39213 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 80.1 in stage 0.0 (TID 536, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 80, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 193.0 in stage 0.0 (TID 198) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 64] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-93.c.maclab-ukbb.internal:44171 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 193.1 in stage 0.0 (TID 537, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 196.0 in stage 0.0 (TID 201) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 65] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 196.1 in stage 0.0 (TID 538, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 94.0 in stage 0.0 (TID 99) in 9956 ms on jg1-w-21.c.maclab-ukbb.internal (executor 27) (73/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-70.c.maclab-ukbb.internal:37919 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 467.0 in stage 0.0 (TID 539, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 467, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 199.0 in stage 0.0 (TID 204) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 66] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-41.c.maclab-ukbb.internal:40599 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-77.c.maclab-ukbb.internal:39733 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-58.c.maclab-ukbb.internal:42063 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 199.1 in stage 0.0 (TID 540, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 127.0 in stage 0.0 (TID 132) in 9630 ms on jg1-w-53.c.maclab-ukbb.internal (executor 114) (74/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-67.c.maclab-ukbb.internal:44843 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 468.0 in stage 0.0 (TID 541, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 468, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 105.0 in stage 0.0 (TID 110) in 9948 ms on jg1-w-79.c.maclab-ukbb.internal (executor 45) (75/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 469.0 in stage 0.0 (TID 542, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 469, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 47.1 in stage 0.0 (TID 460) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 67] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-94.c.maclab-ukbb.internal:40327 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 47.2 in stage 0.0 (TID 543, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 421.0 in stage 0.0 (TID 437) in 2949 ms on jg1-w-78.c.maclab-ukbb.internal (executor 10) (76/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 470.0 in stage 0.0 (TID 544, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 470, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 88.0 in stage 0.0 (TID 93) in 10124 ms on jg1-w-75.c.maclab-ukbb.internal (executor 33) (77/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 471.0 in stage 0.0 (TID 545, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 471, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 74.0 in stage 0.0 (TID 79) in 10624 ms on jg1-w-25.c.maclab-ukbb.internal (executor 42) (78/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 472.0 in stage 0.0 (TID 546, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 472, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 120.0 in stage 0.0 (TID 125) in 9765 ms on jg1-w-48.c.maclab-ukbb.internal (executor 67) (79/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-6.c.maclab-ukbb.internal:44497 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-44.c.maclab-ukbb.internal:42125 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 473.0 in stage 0.0 (TID 547, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 473, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 95.0 in stage 0.0 (TID 100) in 10070 ms on jg1-w-21.c.maclab-ukbb.internal (executor 47) (80/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 474.0 in stage 0.0 (TID 548, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 407.1 in stage 0.0 (TID 449) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 68] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-44.c.maclab-ukbb.internal:40089 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-77.c.maclab-ukbb.internal:43391 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 407.2 in stage 0.0 (TID 549, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 3.3 in stage 0.0 (TID 456) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 69] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 3.4 in stage 0.0 (TID 550, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-61.c.maclab-ukbb.internal:41337 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 165.0 in stage 0.0 (TID 170) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 70] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-84.c.maclab-ukbb.internal:38213 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 165.1 in stage 0.0 (TID 551, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 188.0 in stage 0.0 (TID 193) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 71] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 188.1 in stage 0.0 (TID 552, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 0.4 in stage 0.0 (TID 475) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 72] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-84.c.maclab-ukbb.internal:42505 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-94.c.maclab-ukbb.internal:34785 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-12.c.maclab-ukbb.internal:33639 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-39.c.maclab-ukbb.internal:34709 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 0.5 in stage 0.0 (TID 553, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 399.2 in stage 0.0 (TID 451) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 73] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 399.3 in stage 0.0 (TID 554, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 86.0 in stage 0.0 (TID 91) in 10200 ms on jg1-w-75.c.maclab-ukbb.internal (executor 54) (81/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-6.c.maclab-ukbb.internal:39431 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 475.0 in stage 0.0 (TID 555, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 79.0 in stage 0.0 (TID 84) in 10650 ms on jg1-w-7.c.maclab-ukbb.internal (executor 120) (82/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-52.c.maclab-ukbb.internal:37873 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 476.0 in stage 0.0 (TID 556, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 154.4 in stage 0.0 (TID 474) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 74] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-52.c.maclab-ukbb.internal:38619 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 154.5 in stage 0.0 (TID 557, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 140.0 in stage 0.0 (TID 145) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 75] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 140.1 in stage 0.0 (TID 558, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 108.0 in stage 0.0 (TID 113) in 10079 ms on jg1-w-79.c.maclab-ukbb.internal (executor 26) (83/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 477.0 in stage 0.0 (TID 559, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 477, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 209.0 in stage 0.0 (TID 214) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 76] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 209.1 in stage 0.0 (TID 560, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 89.0 in stage 0.0 (TID 94) in 10240 ms on jg1-w-51.c.maclab-ukbb.internal (executor 31) (84/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 478.0 in stage 0.0 (TID 561, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 413.0 in stage 0.0 (TID 423) in 4133 ms on jg1-w-20.c.maclab-ukbb.internal (executor 3) (85/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 479.0 in stage 0.0 (TID 562, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 479, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 113.0 in stage 0.0 (TID 118) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 77] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 113.1 in stage 0.0 (TID 563, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 90.0 in stage 0.0 (TID 95) in 10253 ms on jg1-w-51.c.maclab-ukbb.internal (executor 31) (86/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 480.0 in stage 0.0 (TID 564, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 480, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 481.0 in stage 0.0 (TID 565, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 481, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 104.0 in stage 0.0 (TID 109) in 10142 ms on jg1-w-38.c.maclab-ukbb.internal (executor 48) (87/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 82.0 in stage 0.0 (TID 87) in 10461 ms on jg1-w-23.c.maclab-ukbb.internal (executor 29) (88/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-70.c.maclab-ukbb.internal:34491 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 482.0 in stage 0.0 (TID 566, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 482, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 168.0 in stage 0.0 (TID 173) in 9263 ms on jg1-w-4.c.maclab-ukbb.internal (executor 146) (89/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 483.0 in stage 0.0 (TID 567, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 483, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 201.0 in stage 0.0 (TID 206) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 78] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-41.c.maclab-ukbb.internal:40953 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 201.1 in stage 0.0 (TID 568, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 93.0 in stage 0.0 (TID 98) in 10237 ms on jg1-w-21.c.maclab-ukbb.internal (executor 27) (90/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 484.0 in stage 0.0 (TID 569, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 484, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 485.0 in stage 0.0 (TID 570, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 485, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 202.0 in stage 0.0 (TID 207) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 79] 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 414.0 in stage 0.0 (TID 424) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 80] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 414.1 in stage 0.0 (TID 571, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 427.0 in stage 0.0 (TID 452) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 81] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-67.c.maclab-ukbb.internal:39707 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 427.1 in stage 0.0 (TID 572, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 425.0 in stage 0.0 (TID 446) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 82] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 425.1 in stage 0.0 (TID 573, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 441.0 in stage 0.0 (TID 482) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 83] 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-12.c.maclab-ukbb.internal:45865 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 441.1 in stage 0.0 (TID 574, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 151.0 in stage 0.0 (TID 156) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 84] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 151.1 in stage 0.0 (TID 575, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 102.0 in stage 0.0 (TID 107) in 10247 ms on jg1-w-38.c.maclab-ukbb.internal (executor 28) (91/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 202.1 in stage 0.0 (TID 576, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 177.0 in stage 0.0 (TID 182) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 85] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 177.1 in stage 0.0 (TID 577, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 247.0 in stage 0.0 (TID 252) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 86] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 247.1 in stage 0.0 (TID 578, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 119.0 in stage 0.0 (TID 124) in 10039 ms on jg1-w-48.c.maclab-ukbb.internal (executor 37) (92/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 486.0 in stage 0.0 (TID 579, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 103.0 in stage 0.0 (TID 108) in 10282 ms on jg1-w-38.c.maclab-ukbb.internal (executor 48) (93/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 487.0 in stage 0.0 (TID 580, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 137.0 in stage 0.0 (TID 142) in 9741 ms on jg1-w-45.c.maclab-ukbb.internal (executor 38) (94/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 488.0 in stage 0.0 (TID 581, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 212.0 in stage 0.0 (TID 217) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 87] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 212.1 in stage 0.0 (TID 582, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 132.0 in stage 0.0 (TID 137) in 9942 ms on jg1-w-53.c.maclab-ukbb.internal (executor 35) (95/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 489.0 in stage 0.0 (TID 583, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 133.0 in stage 0.0 (TID 138) in 9942 ms on jg1-w-53.c.maclab-ukbb.internal (executor 35) (96/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 490.0 in stage 0.0 (TID 584, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 490, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 170.0 in stage 0.0 (TID 175) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 88] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 170.1 in stage 0.0 (TID 585, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 210.0 in stage 0.0 (TID 215) in 9104 ms on jg1-w-4.c.maclab-ukbb.internal (executor 173) (97/30000) 2020-04-02 15:10:35 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-82.c.maclab-ukbb.internal:42273 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 491.0 in stage 0.0 (TID 586, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 107.0 in stage 0.0 (TID 112) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 89] 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 107.1 in stage 0.0 (TID 587, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Finished task 184.0 in stage 0.0 (TID 189) in 9400 ms on jg1-w-86.c.maclab-ukbb.internal (executor 96) (98/30000) 2020-04-02 15:10:35 TaskSetManager: INFO: Starting task 492.0 in stage 0.0 (TID 588, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:35 TaskSetManager: INFO: Lost task 206.0 in stage 0.0 (TID 211) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 90] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-82.c.maclab-ukbb.internal:46589 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-69.c.maclab-ukbb.internal:33471 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 206.1 in stage 0.0 (TID 589, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 1.4 in stage 0.0 (TID 461) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 91] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 1.5 in stage 0.0 (TID 590, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 169.0 in stage 0.0 (TID 174) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 92] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 169.1 in stage 0.0 (TID 591, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 164.0 in stage 0.0 (TID 169) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 93] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 164.1 in stage 0.0 (TID 592, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 136.0 in stage 0.0 (TID 141) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 94] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 136.1 in stage 0.0 (TID 593, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 424.0 in stage 0.0 (TID 445) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 95] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-92.c.maclab-ukbb.internal:38371 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-18.c.maclab-ukbb.internal:39743 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-69.c.maclab-ukbb.internal:39191 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 424.1 in stage 0.0 (TID 594, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 424, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 225.0 in stage 0.0 (TID 230) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 96] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 225.1 in stage 0.0 (TID 595, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 428.0 in stage 0.0 (TID 457) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 97] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 428.1 in stage 0.0 (TID 596, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 138.0 in stage 0.0 (TID 143) in 9935 ms on jg1-w-45.c.maclab-ukbb.internal (executor 68) (99/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 493.0 in stage 0.0 (TID 597, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 166.0 in stage 0.0 (TID 171) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 98] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-61.c.maclab-ukbb.internal:38829 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 166.1 in stage 0.0 (TID 598, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 175.0 in stage 0.0 (TID 180) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 99] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 175.1 in stage 0.0 (TID 599, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 494.0 in stage 0.0 (TID 600, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 494, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 141.0 in stage 0.0 (TID 146) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 100] 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 205.0 in stage 0.0 (TID 210) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 101] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 205.1 in stage 0.0 (TID 601, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 197.0 in stage 0.0 (TID 202) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 102] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 197.1 in stage 0.0 (TID 602, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 220.0 in stage 0.0 (TID 225) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 103] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 220.1 in stage 0.0 (TID 603, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 101.0 in stage 0.0 (TID 106) in 10535 ms on jg1-w-38.c.maclab-ukbb.internal (executor 28) (100/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 141.1 in stage 0.0 (TID 604, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 141, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 139.0 in stage 0.0 (TID 144) in 9994 ms on jg1-w-45.c.maclab-ukbb.internal (executor 68) (101/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 495.0 in stage 0.0 (TID 605, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 146.0 in stage 0.0 (TID 151) in 9942 ms on jg1-w-8.c.maclab-ukbb.internal (executor 155) (102/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 496.0 in stage 0.0 (TID 606, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 155.0 in stage 0.0 (TID 160) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 104] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 155.1 in stage 0.0 (TID 607, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 155, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 49.1 in stage 0.0 (TID 472) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 105] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 49.2 in stage 0.0 (TID 608, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 179.0 in stage 0.0 (TID 184) in 9627 ms on jg1-w-86.c.maclab-ukbb.internal (executor 65) (103/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 497.0 in stage 0.0 (TID 609, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 147.0 in stage 0.0 (TID 152) in 9977 ms on jg1-w-8.c.maclab-ukbb.internal (executor 155) (104/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 498.0 in stage 0.0 (TID 610, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 498, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 437.0 in stage 0.0 (TID 476) in 2092 ms on jg1-w-2.c.maclab-ukbb.internal (executor 79) (105/30000) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-46.c.maclab-ukbb.internal:44887 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-14.c.maclab-ukbb.internal:42031 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 499.0 in stage 0.0 (TID 611, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 499, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 92.0 in stage 0.0 (TID 97) in 10727 ms on jg1-w-51.c.maclab-ukbb.internal (executor 50) (106/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 500.0 in stage 0.0 (TID 612, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 198.0 in stage 0.0 (TID 203) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 106] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 198.1 in stage 0.0 (TID 613, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 123.0 in stage 0.0 (TID 128) in 10341 ms on jg1-w-40.c.maclab-ukbb.internal (executor 41) (107/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 501.0 in stage 0.0 (TID 614, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 501, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 449.0 in stage 0.0 (TID 500) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 107] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-92.c.maclab-ukbb.internal:38573 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 449.1 in stage 0.0 (TID 615, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 81.1 in stage 0.0 (TID 484) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 108] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 81.2 in stage 0.0 (TID 616, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 118.0 in stage 0.0 (TID 123) in 10427 ms on jg1-w-48.c.maclab-ukbb.internal (executor 37) (108/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 502.0 in stage 0.0 (TID 617, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 125.0 in stage 0.0 (TID 130) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 109] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 125.1 in stage 0.0 (TID 618, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 180.0 in stage 0.0 (TID 185) in 9740 ms on jg1-w-86.c.maclab-ukbb.internal (executor 65) (109/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 503.0 in stage 0.0 (TID 619, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 503, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 31.2 in stage 0.0 (TID 455) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 110] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-44.c.maclab-ukbb.internal:40089 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 31.3 in stage 0.0 (TID 620, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 246.0 in stage 0.0 (TID 251) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 111] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 246.1 in stage 0.0 (TID 621, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 191.0 in stage 0.0 (TID 196) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 112] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-18.c.maclab-ukbb.internal:41847 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-24.c.maclab-ukbb.internal:44893 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 191.1 in stage 0.0 (TID 622, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 431.0 in stage 0.0 (TID 466) in 2393 ms on jg1-w-65.c.maclab-ukbb.internal (executor 7) (110/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 504.0 in stage 0.0 (TID 623, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 423.1 in stage 0.0 (TID 495) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 113] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-46.c.maclab-ukbb.internal:42379 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 423.2 in stage 0.0 (TID 624, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 183.0 in stage 0.0 (TID 188) in 9788 ms on jg1-w-86.c.maclab-ukbb.internal (executor 96) (111/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 505.0 in stage 0.0 (TID 625, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 64.1 in stage 0.0 (TID 454) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 114] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-61.c.maclab-ukbb.internal:41337 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 64.2 in stage 0.0 (TID 626, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 134.0 in stage 0.0 (TID 139) in 10249 ms on jg1-w-28.c.maclab-ukbb.internal (executor 69) (112/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 506.0 in stage 0.0 (TID 627, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 203.0 in stage 0.0 (TID 208) in 9693 ms on jg1-w-71.c.maclab-ukbb.internal (executor 89) (113/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 507.0 in stage 0.0 (TID 628, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 126.0 in stage 0.0 (TID 131) in 10485 ms on jg1-w-53.c.maclab-ukbb.internal (executor 114) (114/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 508.0 in stage 0.0 (TID 629, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 508, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 204.0 in stage 0.0 (TID 209) in 9694 ms on jg1-w-71.c.maclab-ukbb.internal (executor 89) (115/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 509.0 in stage 0.0 (TID 630, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 509, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 171.0 in stage 0.0 (TID 176) in 9890 ms on jg1-w-63.c.maclab-ukbb.internal (executor 87) (116/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 510.0 in stage 0.0 (TID 631, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 510, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 39.1 in stage 0.0 (TID 459) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 115] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 39.2 in stage 0.0 (TID 632, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 223.0 in stage 0.0 (TID 228) in 9558 ms on jg1-w-91.c.maclab-ukbb.internal (executor 91) (117/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 511.0 in stage 0.0 (TID 633, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 52.2 in stage 0.0 (TID 498) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 116] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 52.3 in stage 0.0 (TID 634, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 161.0 in stage 0.0 (TID 166) in 10051 ms on jg1-w-16.c.maclab-ukbb.internal (executor 34) (118/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 512.0 in stage 0.0 (TID 635, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 512, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 85.0 in stage 0.0 (TID 90) in 10992 ms on jg1-w-75.c.maclab-ukbb.internal (executor 54) (119/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 513.0 in stage 0.0 (TID 636, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 91.1 in stage 0.0 (TID 506) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 117] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-17.c.maclab-ukbb.internal:34879 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-55.c.maclab-ukbb.internal:42811 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-34.c.maclab-ukbb.internal:33417 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 91.2 in stage 0.0 (TID 637, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 109.0 in stage 0.0 (TID 114) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 118] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 109.1 in stage 0.0 (TID 638, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 218.0 in stage 0.0 (TID 223) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 119] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 218.1 in stage 0.0 (TID 639, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 57.1 in stage 0.0 (TID 491) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 120] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-31.c.maclab-ukbb.internal:45995 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 57.2 in stage 0.0 (TID 640, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 207.0 in stage 0.0 (TID 212) in 9738 ms on jg1-w-11.c.maclab-ukbb.internal (executor 117) (120/30000) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-42.c.maclab-ukbb.internal:40721 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 514.0 in stage 0.0 (TID 641, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 514, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 159.0 in stage 0.0 (TID 164) in 10125 ms on jg1-w-16.c.maclab-ukbb.internal (executor 115) (121/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 515.0 in stage 0.0 (TID 642, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 515, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 439.0 in stage 0.0 (TID 479) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 121] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 439.1 in stage 0.0 (TID 643, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 443.0 in stage 0.0 (TID 487) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 122] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-17.c.maclab-ukbb.internal:39813 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 443.1 in stage 0.0 (TID 644, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 436.0 in stage 0.0 (TID 473) in 2511 ms on jg1-w-65.c.maclab-ukbb.internal (executor 4) (122/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 516.0 in stage 0.0 (TID 645, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 148.0 in stage 0.0 (TID 153) in 10299 ms on jg1-w-35.c.maclab-ukbb.internal (executor 36) (123/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 517.0 in stage 0.0 (TID 646, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 418.1 in stage 0.0 (TID 477) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 123] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 418.2 in stage 0.0 (TID 647, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 189.0 in stage 0.0 (TID 194) in 10007 ms on jg1-w-98.c.maclab-ukbb.internal (executor 94) (124/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 518.0 in stage 0.0 (TID 648, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 231.0 in stage 0.0 (TID 236) in 9609 ms on jg1-w-83.c.maclab-ukbb.internal (executor 85) (125/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 519.0 in stage 0.0 (TID 649, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 56.1 in stage 0.0 (TID 486) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 124] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 56.2 in stage 0.0 (TID 650, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 160.0 in stage 0.0 (TID 165) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 125] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 160.1 in stage 0.0 (TID 651, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 224.0 in stage 0.0 (TID 229) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 126] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 224.1 in stage 0.0 (TID 652, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 232.0 in stage 0.0 (TID 237) in 9631 ms on jg1-w-83.c.maclab-ukbb.internal (executor 85) (126/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 520.0 in stage 0.0 (TID 653, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 257.0 in stage 0.0 (TID 262) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 127] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 257.1 in stage 0.0 (TID 654, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 176.0 in stage 0.0 (TID 181) in 10075 ms on jg1-w-63.c.maclab-ukbb.internal (executor 52) (127/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 521.0 in stage 0.0 (TID 655, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 521, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 172.0 in stage 0.0 (TID 177) in 10078 ms on jg1-w-63.c.maclab-ukbb.internal (executor 87) (128/30000) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-10.c.maclab-ukbb.internal:33053 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-66.c.maclab-ukbb.internal:33471 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-14.c.maclab-ukbb.internal:38859 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 522.0 in stage 0.0 (TID 656, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 522, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 150.0 in stage 0.0 (TID 155) in 10340 ms on jg1-w-35.c.maclab-ukbb.internal (executor 66) (129/30000) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-59.c.maclab-ukbb.internal:40645 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 523.0 in stage 0.0 (TID 657, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 523, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 135.0 in stage 0.0 (TID 140) in 10505 ms on jg1-w-28.c.maclab-ukbb.internal (executor 69) (130/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 524.0 in stage 0.0 (TID 658, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 524, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 97.0 in stage 0.0 (TID 102) in 11071 ms on jg1-w-49.c.maclab-ukbb.internal (executor 43) (131/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 525.0 in stage 0.0 (TID 659, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 525, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 222.0 in stage 0.0 (TID 227) in 9776 ms on jg1-w-91.c.maclab-ukbb.internal (executor 91) (132/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 526.0 in stage 0.0 (TID 660, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 526, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 429.0 in stage 0.0 (TID 462) in 2834 ms on jg1-w-22.c.maclab-ukbb.internal (executor 11) (133/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 527.0 in stage 0.0 (TID 661, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 527, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 444.0 in stage 0.0 (TID 488) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 128] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 444.1 in stage 0.0 (TID 662, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 163.0 in stage 0.0 (TID 168) in 10250 ms on jg1-w-76.c.maclab-ukbb.internal (executor 92) (134/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 528.0 in stage 0.0 (TID 663, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 528, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 211.0 in stage 0.0 (TID 216) in 9861 ms on jg1-w-8.c.maclab-ukbb.internal (executor 180) (135/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 529.0 in stage 0.0 (TID 664, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 529, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 174.0 in stage 0.0 (TID 179) in 10163 ms on jg1-w-68.c.maclab-ukbb.internal (executor 64) (136/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 530.0 in stage 0.0 (TID 665, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 530, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 200.0 in stage 0.0 (TID 205) in 10025 ms on jg1-w-95.c.maclab-ukbb.internal (executor 118) (137/30000) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-44.c.maclab-ukbb.internal:42125 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 531.0 in stage 0.0 (TID 666, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 531, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 219.0 in stage 0.0 (TID 224) in 9862 ms on jg1-w-15.c.maclab-ukbb.internal (executor 127) (138/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 532.0 in stage 0.0 (TID 667, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 532, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 237.0 in stage 0.0 (TID 242) in 9721 ms on jg1-w-97.c.maclab-ukbb.internal (executor 126) (139/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 533.0 in stage 0.0 (TID 668, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 533, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 173.0 in stage 0.0 (TID 178) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 129] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 173.1 in stage 0.0 (TID 669, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 442.0 in stage 0.0 (TID 483) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 130] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 442.1 in stage 0.0 (TID 670, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 98.0 in stage 0.0 (TID 103) in 11166 ms on jg1-w-49.c.maclab-ukbb.internal (executor 43) (140/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 534.0 in stage 0.0 (TID 671, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 534, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 415.1 in stage 0.0 (TID 492) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 131] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 415.2 in stage 0.0 (TID 672, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 51.1 in stage 0.0 (TID 470) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 132] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 51.2 in stage 0.0 (TID 673, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 535.0 in stage 0.0 (TID 674, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 192.0 in stage 0.0 (TID 197) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 133] 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 58.2 in stage 0.0 (TID 501) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 134] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 58.3 in stage 0.0 (TID 675, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 111.0 in stage 0.0 (TID 116) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 135] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-88.c.maclab-ukbb.internal:34081 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-18.c.maclab-ukbb.internal:39743 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-88.c.maclab-ukbb.internal:42287 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 111.1 in stage 0.0 (TID 676, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 149.0 in stage 0.0 (TID 154) in 10502 ms on jg1-w-35.c.maclab-ukbb.internal (executor 36) (141/30000) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-10.c.maclab-ukbb.internal:33969 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-92.c.maclab-ukbb.internal:38371 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 192.1 in stage 0.0 (TID 677, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 405.1 in stage 0.0 (TID 439) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 136] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 405.2 in stage 0.0 (TID 678, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 405, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-55.c.maclab-ukbb.internal:46807 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 282.0 in stage 0.0 (TID 287) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 137] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-92.c.maclab-ukbb.internal:38573 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 282.1 in stage 0.0 (TID 679, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 281.0 in stage 0.0 (TID 286) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 138] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 281.1 in stage 0.0 (TID 680, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 236.0 in stage 0.0 (TID 241) in 9811 ms on jg1-w-97.c.maclab-ukbb.internal (executor 82) (142/30000) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-46.c.maclab-ukbb.internal:42379 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-34.c.maclab-ukbb.internal:40847 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-24.c.maclab-ukbb.internal:43327 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 536.0 in stage 0.0 (TID 681, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 75.1 in stage 0.0 (TID 485) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 139] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 75.2 in stage 0.0 (TID 682, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 99.0 in stage 0.0 (TID 104) in 11250 ms on jg1-w-49.c.maclab-ukbb.internal (executor 24) (143/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 537.0 in stage 0.0 (TID 683, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 537, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 433.0 in stage 0.0 (TID 468) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 140] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-18.c.maclab-ukbb.internal:41847 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 433.1 in stage 0.0 (TID 684, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 433, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 186.0 in stage 0.0 (TID 191) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 141] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 186.1 in stage 0.0 (TID 685, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 20.2 in stage 0.0 (TID 496) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 142] 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-14.c.maclab-ukbb.internal:42031 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-31.c.maclab-ukbb.internal:39935 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 20.3 in stage 0.0 (TID 686, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 234.0 in stage 0.0 (TID 239) in 9889 ms on jg1-w-83.c.maclab-ukbb.internal (executor 145) (144/30000) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-24.c.maclab-ukbb.internal:44893 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 538.0 in stage 0.0 (TID 687, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 538, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 153.0 in stage 0.0 (TID 158) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 143] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 153.1 in stage 0.0 (TID 688, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 53.2 in stage 0.0 (TID 507) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 144] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 53.3 in stage 0.0 (TID 689, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 440.0 in stage 0.0 (TID 480) in 2771 ms on jg1-w-62.c.maclab-ukbb.internal (executor 60) (145/30000) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-27.c.maclab-ukbb.internal:38175 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 539.0 in stage 0.0 (TID 690, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 539, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 435.0 in stage 0.0 (TID 471) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 145] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 435.1 in stage 0.0 (TID 691, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-42.c.maclab-ukbb.internal:34507 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 221.0 in stage 0.0 (TID 226) in 10092 ms on jg1-w-15.c.maclab-ukbb.internal (executor 83) (146/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 540.0 in stage 0.0 (TID 692, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 540, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 432.0 in stage 0.0 (TID 467) in 2991 ms on jg1-w-56.c.maclab-ukbb.internal (executor 17) (147/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 541.0 in stage 0.0 (TID 693, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 541, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Finished task 112.0 in stage 0.0 (TID 117) in 11309 ms on jg1-w-90.c.maclab-ukbb.internal (executor 44) (148/30000) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 542.0 in stage 0.0 (TID 694, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 542, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 185.0 in stage 0.0 (TID 190) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 146] 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 185.1 in stage 0.0 (TID 695, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Starting task 543.0 in stage 0.0 (TID 696, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 27.2 in stage 0.0 (TID 481) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 147] 2020-04-02 15:10:36 TaskSetManager: INFO: Lost task 438.0 in stage 0.0 (TID 478) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 148] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-57.c.maclab-ukbb.internal:38723 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-59.c.maclab-ukbb.internal:37035 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-36.c.maclab-ukbb.internal:42733 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-36.c.maclab-ukbb.internal:41751 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-27.c.maclab-ukbb.internal:41459 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-55.c.maclab-ukbb.internal:42811 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 438.1 in stage 0.0 (TID 697, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 438, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 274.0 in stage 0.0 (TID 279) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 149] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 274.1 in stage 0.0 (TID 698, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 292.0 in stage 0.0 (TID 297) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 150] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 292.1 in stage 0.0 (TID 699, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 217.0 in stage 0.0 (TID 222) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 151] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 217.1 in stage 0.0 (TID 700, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 50.1 in stage 0.0 (TID 465) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 152] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 50.2 in stage 0.0 (TID 701, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 277.0 in stage 0.0 (TID 282) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 153] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-17.c.maclab-ukbb.internal:34879 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 277.1 in stage 0.0 (TID 702, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 190.0 in stage 0.0 (TID 195) in 10502 ms on jg1-w-98.c.maclab-ukbb.internal (executor 94) (149/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 27.3 in stage 0.0 (TID 703, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 63.2 in stage 0.0 (TID 493) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 154] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 63.3 in stage 0.0 (TID 704, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 214.0 in stage 0.0 (TID 219) in 10239 ms on jg1-w-32.c.maclab-ukbb.internal (executor 57) (150/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-42.c.maclab-ukbb.internal:40721 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 544.0 in stage 0.0 (TID 705, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 0.5 in stage 0.0 (TID 553) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 155] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 0.6 in stage 0.0 (TID 706, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 446.0 in stage 0.0 (TID 490) in 2597 ms on jg1-w-29.c.maclab-ukbb.internal (executor 1) (151/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-34.c.maclab-ukbb.internal:33417 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 545.0 in stage 0.0 (TID 707, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 545, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 546.0 in stage 0.0 (TID 708, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 546, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 451.0 in stage 0.0 (TID 504) in 2320 ms on jg1-w-62.c.maclab-ukbb.internal (executor 2) (152/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 409.2 in stage 0.0 (TID 526) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 156] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 409.3 in stage 0.0 (TID 709, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 131.0 in stage 0.0 (TID 136) in 11163 ms on jg1-w-99.c.maclab-ukbb.internal (executor 49) (153/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-57.c.maclab-ukbb.internal:39279 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-43.c.maclab-ukbb.internal:44457 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 547.0 in stage 0.0 (TID 710, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 547, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 233.0 in stage 0.0 (TID 238) in 10142 ms on jg1-w-83.c.maclab-ukbb.internal (executor 145) (154/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 548.0 in stage 0.0 (TID 711, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 548, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 122.0 in stage 0.0 (TID 127) in 11245 ms on jg1-w-40.c.maclab-ukbb.internal (executor 41) (155/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 549.0 in stage 0.0 (TID 712, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 549, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 216.0 in stage 0.0 (TID 221) in 10277 ms on jg1-w-32.c.maclab-ukbb.internal (executor 90) (156/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 550.0 in stage 0.0 (TID 713, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 550, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 251.0 in stage 0.0 (TID 256) in 9716 ms on jg1-w-19.c.maclab-ukbb.internal (executor 101) (157/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 551.0 in stage 0.0 (TID 714, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 551, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 447.0 in stage 0.0 (TID 494) in 2540 ms on jg1-w-81.c.maclab-ukbb.internal (executor 111) (158/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-72.c.maclab-ukbb.internal:35339 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 552.0 in stage 0.0 (TID 715, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 552, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 265.0 in stage 0.0 (TID 270) in 9450 ms on jg1-w-93.c.maclab-ukbb.internal (executor 113) (159/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-59.c.maclab-ukbb.internal:40645 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 553.0 in stage 0.0 (TID 716, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 553, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 215.0 in stage 0.0 (TID 220) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 157] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 215.1 in stage 0.0 (TID 717, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 215, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 228.0 in stage 0.0 (TID 233) in 10218 ms on jg1-w-87.c.maclab-ukbb.internal (executor 53) (160/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on jg1-w-66.c.maclab-ukbb.internal:46351 (size: 108.4 KB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-31.c.maclab-ukbb.internal:45995 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 554.0 in stage 0.0 (TID 718, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 275.0 in stage 0.0 (TID 280) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 158] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 275.1 in stage 0.0 (TID 719, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 62.1 in stage 0.0 (TID 497) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 159] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-58.c.maclab-ukbb.internal:33577 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-96.c.maclab-ukbb.internal:35083 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-14.c.maclab-ukbb.internal:38859 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 62.2 in stage 0.0 (TID 720, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 142.0 in stage 0.0 (TID 147) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 160] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-17.c.maclab-ukbb.internal:39813 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 142.1 in stage 0.0 (TID 721, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 240.0 in stage 0.0 (TID 245) in 10144 ms on jg1-w-6.c.maclab-ukbb.internal (executor 176) (161/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 555.0 in stage 0.0 (TID 722, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 555, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 556.0 in stage 0.0 (TID 723, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 556, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 227.0 in stage 0.0 (TID 232) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 161] 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 124.0 in stage 0.0 (TID 129) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 162] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-54.c.maclab-ukbb.internal:42567 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 124.1 in stage 0.0 (TID 724, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 430.0 in stage 0.0 (TID 464) in 3384 ms on jg1-w-26.c.maclab-ukbb.internal (executor 21) (162/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 227.1 in stage 0.0 (TID 725, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 227, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 426.1 in stage 0.0 (TID 528) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 163] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-74.c.maclab-ukbb.internal:41925 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-10.c.maclab-ukbb.internal:33053 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 426.2 in stage 0.0 (TID 726, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 557.0 in stage 0.0 (TID 727, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 557, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 450.0 in stage 0.0 (TID 503) in 2511 ms on jg1-w-56.c.maclab-ukbb.internal (executor 17) (163/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 258.0 in stage 0.0 (TID 263) in 9701 ms on jg1-w-39.c.maclab-ukbb.internal (executor 137) (164/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 558.0 in stage 0.0 (TID 728, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 558, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 448.0 in stage 0.0 (TID 499) in 2559 ms on jg1-w-1.c.maclab-ukbb.internal (executor 123) (165/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 559.0 in stage 0.0 (TID 729, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 559, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 254.0 in stage 0.0 (TID 259) in 9752 ms on jg1-w-33.c.maclab-ukbb.internal (executor 107) (166/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-43.c.maclab-ukbb.internal:39461 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 560.0 in stage 0.0 (TID 730, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 560, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 143.0 in stage 0.0 (TID 148) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 164] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-34.c.maclab-ukbb.internal:40847 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-74.c.maclab-ukbb.internal:41657 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 143.1 in stage 0.0 (TID 731, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 167.1 in stage 0.0 (TID 519) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 165] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 167.2 in stage 0.0 (TID 732, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 242.0 in stage 0.0 (TID 247) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 166] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-72.c.maclab-ukbb.internal:42307 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 242.1 in stage 0.0 (TID 733, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 310.0 in stage 0.0 (TID 315) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 167] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 310.1 in stage 0.0 (TID 734, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 245.0 in stage 0.0 (TID 250) in 9957 ms on jg1-w-73.c.maclab-ukbb.internal (executor 130) (167/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 561.0 in stage 0.0 (TID 735, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 561, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 128.0 in stage 0.0 (TID 133) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 168] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 128.1 in stage 0.0 (TID 736, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 208.0 in stage 0.0 (TID 213) in 10545 ms on jg1-w-11.c.maclab-ukbb.internal (executor 117) (168/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 562.0 in stage 0.0 (TID 737, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 562, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 283.0 in stage 0.0 (TID 288) in 9431 ms on jg1-w-52.c.maclab-ukbb.internal (executor 106) (169/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-10.c.maclab-ukbb.internal:33969 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-31.c.maclab-ukbb.internal:39935 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 563.0 in stage 0.0 (TID 738, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 563, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 188.1 in stage 0.0 (TID 552) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 169] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-88.c.maclab-ukbb.internal:42287 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-55.c.maclab-ukbb.internal:46807 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 188.2 in stage 0.0 (TID 739, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 253.0 in stage 0.0 (TID 258) in 9844 ms on jg1-w-33.c.maclab-ukbb.internal (executor 107) (170/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 564.0 in stage 0.0 (TID 740, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 564, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 238.0 in stage 0.0 (TID 243) in 10357 ms on jg1-w-97.c.maclab-ukbb.internal (executor 126) (171/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 565.0 in stage 0.0 (TID 741, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 565, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 566.0 in stage 0.0 (TID 742, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 566, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 267.0 in stage 0.0 (TID 272) in 9650 ms on jg1-w-94.c.maclab-ukbb.internal (executor 99) (172/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 199.1 in stage 0.0 (TID 540) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 170] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 199.2 in stage 0.0 (TID 743, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 156.1 in stage 0.0 (TID 523) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 171] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 156.2 in stage 0.0 (TID 744, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 414.1 in stage 0.0 (TID 571) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 172] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 414.2 in stage 0.0 (TID 745, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 182.0 in stage 0.0 (TID 187) in 10825 ms on jg1-w-85.c.maclab-ukbb.internal (executor 63) (173/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 567.0 in stage 0.0 (TID 746, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 567, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 181.0 in stage 0.0 (TID 186) in 10830 ms on jg1-w-85.c.maclab-ukbb.internal (executor 63) (174/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 568.0 in stage 0.0 (TID 747, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 157.1 in stage 0.0 (TID 513) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 173] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 157.2 in stage 0.0 (TID 748, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 399.3 in stage 0.0 (TID 554) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 174] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 399.4 in stage 0.0 (TID 749, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 287.0 in stage 0.0 (TID 292) in 9493 ms on jg1-w-70.c.maclab-ukbb.internal (executor 102) (175/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 569.0 in stage 0.0 (TID 750, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 569, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 226.0 in stage 0.0 (TID 231) in 10455 ms on jg1-w-87.c.maclab-ukbb.internal (executor 86) (176/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 570.0 in stage 0.0 (TID 751, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 570, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 571.0 in stage 0.0 (TID 752, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 571, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 110.0 in stage 0.0 (TID 115) in 11758 ms on jg1-w-90.c.maclab-ukbb.internal (executor 25) (177/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 288.0 in stage 0.0 (TID 293) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 175] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-88.c.maclab-ukbb.internal:34081 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 288.1 in stage 0.0 (TID 753, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 187.1 in stage 0.0 (TID 532) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 176] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 187.2 in stage 0.0 (TID 754, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 289.0 in stage 0.0 (TID 294) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 177] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 289.1 in stage 0.0 (TID 755, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 158.1 in stage 0.0 (TID 511) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 178] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-24.c.maclab-ukbb.internal:43327 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 158.2 in stage 0.0 (TID 756, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 264.0 in stage 0.0 (TID 269) in 9717 ms on jg1-w-93.c.maclab-ukbb.internal (executor 144) (178/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 572.0 in stage 0.0 (TID 757, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 572, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 263.0 in stage 0.0 (TID 268) in 9718 ms on jg1-w-93.c.maclab-ukbb.internal (executor 144) (179/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 573.0 in stage 0.0 (TID 758, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 573, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 406.2 in stage 0.0 (TID 509) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 179] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 406.3 in stage 0.0 (TID 759, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 229.0 in stage 0.0 (TID 234) in 10481 ms on jg1-w-87.c.maclab-ukbb.internal (executor 53) (180/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 574.0 in stage 0.0 (TID 760, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 574, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 268.0 in stage 0.0 (TID 273) in 9718 ms on jg1-w-94.c.maclab-ukbb.internal (executor 99) (181/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 575.0 in stage 0.0 (TID 761, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 575, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 408.2 in stage 0.0 (TID 521) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 180] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 408.3 in stage 0.0 (TID 762, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 115.1 in stage 0.0 (TID 502) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 181] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 115.2 in stage 0.0 (TID 763, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 115, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 279.0 in stage 0.0 (TID 284) in 9631 ms on jg1-w-67.c.maclab-ukbb.internal (executor 110) (182/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 576.0 in stage 0.0 (TID 764, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 576, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 255.0 in stage 0.0 (TID 260) in 9923 ms on jg1-w-33.c.maclab-ukbb.internal (executor 140) (183/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-47.c.maclab-ukbb.internal:39845 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 577.0 in stage 0.0 (TID 765, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 577, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 256.0 in stage 0.0 (TID 261) in 9952 ms on jg1-w-33.c.maclab-ukbb.internal (executor 140) (184/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-42.c.maclab-ukbb.internal:34507 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 578.0 in stage 0.0 (TID 766, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 578, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 195.1 in stage 0.0 (TID 522) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 182] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 195.2 in stage 0.0 (TID 767, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 239.0 in stage 0.0 (TID 244) in 10405 ms on jg1-w-6.c.maclab-ukbb.internal (executor 176) (185/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-54.c.maclab-ukbb.internal:43337 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 579.0 in stage 0.0 (TID 768, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 579, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 250.0 in stage 0.0 (TID 255) in 10091 ms on jg1-w-19.c.maclab-ukbb.internal (executor 133) (186/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 580.0 in stage 0.0 (TID 769, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 580, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 241.0 in stage 0.0 (TID 246) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 183] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-58.c.maclab-ukbb.internal:42063 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-46.c.maclab-ukbb.internal:44887 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 241.1 in stage 0.0 (TID 770, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 241, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 19.1 in stage 0.0 (TID 463) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 184] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 19.2 in stage 0.0 (TID 771, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 67.0 in stage 0.0 (TID 72) in 12790 ms on jg1-w-60.c.maclab-ukbb.internal (executor 15) (187/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 581.0 in stage 0.0 (TID 772, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 581, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 235.0 in stage 0.0 (TID 240) in 10533 ms on jg1-w-97.c.maclab-ukbb.internal (executor 82) (188/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 582.0 in stage 0.0 (TID 773, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 582, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 225.1 in stage 0.0 (TID 595) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 185] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 225.2 in stage 0.0 (TID 774, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 270.0 in stage 0.0 (TID 275) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 186] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 270.1 in stage 0.0 (TID 775, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 270, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 249.0 in stage 0.0 (TID 254) in 10154 ms on jg1-w-19.c.maclab-ukbb.internal (executor 133) (189/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-27.c.maclab-ukbb.internal:38175 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 583.0 in stage 0.0 (TID 776, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 583, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 427.1 in stage 0.0 (TID 572) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 187] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-57.c.maclab-ukbb.internal:38723 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 427.2 in stage 0.0 (TID 777, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 449.1 in stage 0.0 (TID 615) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 188] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 449.2 in stage 0.0 (TID 778, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 475.0 in stage 0.0 (TID 555) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 189] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 475.1 in stage 0.0 (TID 779, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 248.0 in stage 0.0 (TID 253) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 190] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 248.1 in stage 0.0 (TID 780, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 584.0 in stage 0.0 (TID 781, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 113.1 in stage 0.0 (TID 563) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 191] 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 280.0 in stage 0.0 (TID 285) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 192] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-96.c.maclab-ukbb.internal:45841 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 280.1 in stage 0.0 (TID 782, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 276.0 in stage 0.0 (TID 281) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 193] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-47.c.maclab-ukbb.internal:40599 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 276.1 in stage 0.0 (TID 783, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 154.5 in stage 0.0 (TID 557) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 194] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 154.6 in stage 0.0 (TID 784, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 47.2 in stage 0.0 (TID 543) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 195] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-36.c.maclab-ukbb.internal:42733 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 47.3 in stage 0.0 (TID 785, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 407.2 in stage 0.0 (TID 549) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 196] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 407.3 in stage 0.0 (TID 786, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 452.0 in stage 0.0 (TID 508) in 2734 ms on jg1-w-78.c.maclab-ukbb.internal (executor 5) (190/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-59.c.maclab-ukbb.internal:37035 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 113.2 in stage 0.0 (TID 787, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 459.0 in stage 0.0 (TID 518) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 197] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-36.c.maclab-ukbb.internal:41751 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 459.1 in stage 0.0 (TID 788, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 272.0 in stage 0.0 (TID 277) in 9925 ms on jg1-w-77.c.maclab-ukbb.internal (executor 128) (191/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 585.0 in stage 0.0 (TID 789, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 585, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 193.1 in stage 0.0 (TID 537) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 198] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-27.c.maclab-ukbb.internal:41459 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-57.c.maclab-ukbb.internal:39279 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 193.2 in stage 0.0 (TID 790, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 445.0 in stage 0.0 (TID 489) in 3204 ms on jg1-w-50.c.maclab-ukbb.internal (executor 14) (192/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-43.c.maclab-ukbb.internal:44457 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 586.0 in stage 0.0 (TID 791, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 586, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 162.0 in stage 0.0 (TID 167) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 199] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 162.1 in stage 0.0 (TID 792, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 162, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 243.0 in stage 0.0 (TID 248) in 10545 ms on jg1-w-84.c.maclab-ukbb.internal (executor 122) (193/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 587.0 in stage 0.0 (TID 793, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 587, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 244.0 in stage 0.0 (TID 249) in 10554 ms on jg1-w-84.c.maclab-ukbb.internal (executor 122) (194/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-41.c.maclab-ukbb.internal:40953 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-74.c.maclab-ukbb.internal:41925 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 588.0 in stage 0.0 (TID 794, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 588, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 194.1 in stage 0.0 (TID 530) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 200] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 194.2 in stage 0.0 (TID 795, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 469.0 in stage 0.0 (TID 542) in 2213 ms on jg1-w-20.c.maclab-ukbb.internal (executor 6) (195/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 589.0 in stage 0.0 (TID 796, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 589, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 476.0 in stage 0.0 (TID 556) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 201] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 476.1 in stage 0.0 (TID 797, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 41.1 in stage 0.0 (TID 458) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 202] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 41.2 in stage 0.0 (TID 798, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 478.0 in stage 0.0 (TID 561) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 203] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 478.1 in stage 0.0 (TID 799, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 144.0 in stage 0.0 (TID 149) in 11623 ms on jg1-w-12.c.maclab-ukbb.internal (executor 32) (196/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 590.0 in stage 0.0 (TID 800, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 590, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 425.1 in stage 0.0 (TID 573) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 204] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-41.c.maclab-ukbb.internal:40599 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-58.c.maclab-ukbb.internal:33577 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 425.2 in stage 0.0 (TID 801, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 285.0 in stage 0.0 (TID 290) in 9928 ms on jg1-w-70.c.maclab-ukbb.internal (executor 135) (197/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 591.0 in stage 0.0 (TID 802, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 591, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 129.0 in stage 0.0 (TID 134) in 11904 ms on jg1-w-99.c.maclab-ukbb.internal (executor 30) (198/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 592.0 in stage 0.0 (TID 803, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 260.0 in stage 0.0 (TID 265) in 10256 ms on jg1-w-39.c.maclab-ukbb.internal (executor 104) (199/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-74.c.maclab-ukbb.internal:41657 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-96.c.maclab-ukbb.internal:35083 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 593.0 in stage 0.0 (TID 804, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 278.0 in stage 0.0 (TID 283) in 10041 ms on jg1-w-67.c.maclab-ukbb.internal (executor 141) (200/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 594.0 in stage 0.0 (TID 805, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 454.0 in stage 0.0 (TID 512) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 205] 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-72.c.maclab-ukbb.internal:42307 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 454.1 in stage 0.0 (TID 806, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 454, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 145.0 in stage 0.0 (TID 150) in 11684 ms on jg1-w-12.c.maclab-ukbb.internal (executor 32) (201/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 595.0 in stage 0.0 (TID 807, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 595, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 596.0 in stage 0.0 (TID 808, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 266.0 in stage 0.0 (TID 271) in 10164 ms on jg1-w-93.c.maclab-ukbb.internal (executor 113) (202/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 471.0 in stage 0.0 (TID 545) in 2288 ms on jg1-w-25.c.maclab-ukbb.internal (executor 42) (203/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-54.c.maclab-ukbb.internal:42567 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 597.0 in stage 0.0 (TID 809, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 212.1 in stage 0.0 (TID 582) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 206] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 212.2 in stage 0.0 (TID 810, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 291.0 in stage 0.0 (TID 296) in 9863 ms on jg1-w-69.c.maclab-ukbb.internal (executor 136) (204/30000) 2020-04-02 15:10:37 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-43.c.maclab-ukbb.internal:39461 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 598.0 in stage 0.0 (TID 811, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 206.1 in stage 0.0 (TID 589) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 207] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 206.2 in stage 0.0 (TID 812, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 106.1 in stage 0.0 (TID 531) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 208] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 106.2 in stage 0.0 (TID 813, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 474.0 in stage 0.0 (TID 548) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 209] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 474.1 in stage 0.0 (TID 814, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 309.0 in stage 0.0 (TID 314) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 210] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 309.1 in stage 0.0 (TID 815, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 309, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 460.0 in stage 0.0 (TID 520) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 211] 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 460.1 in stage 0.0 (TID 816, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Finished task 100.0 in stage 0.0 (TID 105) in 12370 ms on jg1-w-49.c.maclab-ukbb.internal (executor 24) (205/30000) 2020-04-02 15:10:37 TaskSetManager: INFO: Starting task 599.0 in stage 0.0 (TID 817, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 599, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:37 TaskSetManager: INFO: Lost task 331.0 in stage 0.0 (TID 337) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 212] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 331.1 in stage 0.0 (TID 818, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 458.0 in stage 0.0 (TID 517) in 2818 ms on jg1-w-22.c.maclab-ukbb.internal (executor 8) (206/30000) 2020-04-02 15:10:38 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-54.c.maclab-ukbb.internal:43337 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 600.0 in stage 0.0 (TID 819, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 600, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 165.1 in stage 0.0 (TID 551) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 213] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 165.2 in stage 0.0 (TID 820, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 293.0 in stage 0.0 (TID 298) in 9872 ms on jg1-w-61.c.maclab-ukbb.internal (executor 109) (207/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 601.0 in stage 0.0 (TID 821, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 284.0 in stage 0.0 (TID 289) in 10119 ms on jg1-w-52.c.maclab-ukbb.internal (executor 106) (208/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 602.0 in stage 0.0 (TID 822, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 602, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 269.0 in stage 0.0 (TID 274) in 10284 ms on jg1-w-77.c.maclab-ukbb.internal (executor 147) (209/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 603.0 in stage 0.0 (TID 823, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 603, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 504.0 in stage 0.0 (TID 623) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 214] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 504.1 in stage 0.0 (TID 824, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 121.1 in stage 0.0 (TID 533) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 215] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 121.2 in stage 0.0 (TID 825, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 294.0 in stage 0.0 (TID 299) in 9891 ms on jg1-w-61.c.maclab-ukbb.internal (executor 109) (210/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 604.0 in stage 0.0 (TID 826, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 604, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 453.0 in stage 0.0 (TID 510) in 3077 ms on jg1-w-13.c.maclab-ukbb.internal (executor 55) (211/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 605.0 in stage 0.0 (TID 827, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 605, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 443.1 in stage 0.0 (TID 644) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 216] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 443.2 in stage 0.0 (TID 828, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 259.0 in stage 0.0 (TID 264) in 10482 ms on jg1-w-39.c.maclab-ukbb.internal (executor 104) (212/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 606.0 in stage 0.0 (TID 829, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 606, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 247.1 in stage 0.0 (TID 578) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 217] 2020-04-02 15:10:38 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-58.c.maclab-ukbb.internal:42063 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 247.2 in stage 0.0 (TID 830, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 262.0 in stage 0.0 (TID 267) in 10392 ms on jg1-w-94.c.maclab-ukbb.internal (executor 131) (213/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 607.0 in stage 0.0 (TID 831, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 607, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 333.0 in stage 0.0 (TID 339) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 218] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 333.1 in stage 0.0 (TID 832, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 151.1 in stage 0.0 (TID 575) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 219] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 151.2 in stage 0.0 (TID 833, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 1.5 in stage 0.0 (TID 590) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 220] 2020-04-02 15:10:38 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-72.c.maclab-ukbb.internal:35339 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 1.6 in stage 0.0 (TID 834, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 196.1 in stage 0.0 (TID 538) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 221] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 196.2 in stage 0.0 (TID 835, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 455.0 in stage 0.0 (TID 514) in 3090 ms on jg1-w-64.c.maclab-ukbb.internal (executor 40) (214/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 608.0 in stage 0.0 (TID 836, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 351.0 in stage 0.0 (TID 357) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 222] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 351.1 in stage 0.0 (TID 837, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 80.1 in stage 0.0 (TID 536) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 223] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 80.2 in stage 0.0 (TID 838, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 80, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 273.0 in stage 0.0 (TID 278) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 224] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 273.1 in stage 0.0 (TID 839, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 273, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 220.1 in stage 0.0 (TID 603) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 225] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 220.2 in stage 0.0 (TID 840, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 461.0 in stage 0.0 (TID 524) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 226] 2020-04-02 15:10:38 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-96.c.maclab-ukbb.internal:45841 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 461.1 in stage 0.0 (TID 841, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 461, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 355.0 in stage 0.0 (TID 361) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 227] 2020-04-02 15:10:38 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-47.c.maclab-ukbb.internal:40599 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:38 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-47.c.maclab-ukbb.internal:39845 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 355.1 in stage 0.0 (TID 842, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 81.2 in stage 0.0 (TID 616) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 228] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 81.3 in stage 0.0 (TID 843, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 422.1 in stage 0.0 (TID 505) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 229] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 422.2 in stage 0.0 (TID 844, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 155.1 in stage 0.0 (TID 607) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 230] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 155.2 in stage 0.0 (TID 845, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 155, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 326.0 in stage 0.0 (TID 332) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 231] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 326.1 in stage 0.0 (TID 846, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 326, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 462.0 in stage 0.0 (TID 525) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 232] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 462.1 in stage 0.0 (TID 847, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 462, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 609.0 in stage 0.0 (TID 848, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 496.0 in stage 0.0 (TID 606) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 233] 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 513.0 in stage 0.0 (TID 636) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 234] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 513.1 in stage 0.0 (TID 849, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 517.0 in stage 0.0 (TID 646) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 235] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 517.1 in stage 0.0 (TID 850, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 496.1 in stage 0.0 (TID 851, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 178.0 in stage 0.0 (TID 183) in 11775 ms on jg1-w-89.c.maclab-ukbb.internal (executor 71) (215/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 505.0 in stage 0.0 (TID 625) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 236] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 505.1 in stage 0.0 (TID 852, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 467.0 in stage 0.0 (TID 539) in 2860 ms on jg1-w-95.c.maclab-ukbb.internal (executor 118) (216/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 610.0 in stage 0.0 (TID 853, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 610, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 53.3 in stage 0.0 (TID 689) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 237] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 53.4 in stage 0.0 (TID 854, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 170.1 in stage 0.0 (TID 585) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 238] 2020-04-02 15:10:38 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-41.c.maclab-ukbb.internal:40599 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 170.2 in stage 0.0 (TID 855, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 54.1 in stage 0.0 (TID 453) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 239] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 54.2 in stage 0.0 (TID 856, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 54, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 175.1 in stage 0.0 (TID 599) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 240] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 175.2 in stage 0.0 (TID 857, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 205.1 in stage 0.0 (TID 601) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 241] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 205.2 in stage 0.0 (TID 858, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 441.1 in stage 0.0 (TID 574) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 242] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 441.2 in stage 0.0 (TID 859, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 535.0 in stage 0.0 (TID 674) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 243] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 535.1 in stage 0.0 (TID 860, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 295.0 in stage 0.0 (TID 300) in 10266 ms on jg1-w-61.c.maclab-ukbb.internal (executor 142) (217/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 611.0 in stage 0.0 (TID 861, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 611, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 136.1 in stage 0.0 (TID 593) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 244] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 136.2 in stage 0.0 (TID 862, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 501.0 in stage 0.0 (TID 614) in 2220 ms on jg1-w-20.c.maclab-ukbb.internal (executor 6) (218/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 612.0 in stage 0.0 (TID 863, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 612, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 201.1 in stage 0.0 (TID 568) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 245] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 201.2 in stage 0.0 (TID 864, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 3.4 in stage 0.0 (TID 550) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 246] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 3.5 in stage 0.0 (TID 865, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 191.1 in stage 0.0 (TID 622) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 247] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 191.2 in stage 0.0 (TID 866, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 312.0 in stage 0.0 (TID 317) in 10066 ms on jg1-w-44.c.maclab-ukbb.internal (executor 139) (219/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 613.0 in stage 0.0 (TID 867, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 613, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 614.0 in stage 0.0 (TID 868, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 130.0 in stage 0.0 (TID 135) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 248] 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 340.0 in stage 0.0 (TID 346) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 249] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 340.1 in stage 0.0 (TID 869, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 0.6 in stage 0.0 (TID 706) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 250] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 0.7 in stage 0.0 (TID 870, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 323.0 in stage 0.0 (TID 329) in 9517 ms on jg1-w-24.c.maclab-ukbb.internal (executor 182) (220/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 130.1 in stage 0.0 (TID 871, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 130, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 615.0 in stage 0.0 (TID 872, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 615, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 325.0 in stage 0.0 (TID 331) in 9517 ms on jg1-w-92.c.maclab-ukbb.internal (executor 196) (221/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 324.0 in stage 0.0 (TID 330) in 9517 ms on jg1-w-92.c.maclab-ukbb.internal (executor 196) (222/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 616.0 in stage 0.0 (TID 873, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 616, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 286.0 in stage 0.0 (TID 291) in 10661 ms on jg1-w-70.c.maclab-ukbb.internal (executor 135) (223/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 617.0 in stage 0.0 (TID 874, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 617, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 202.1 in stage 0.0 (TID 576) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 251] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 202.2 in stage 0.0 (TID 875, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 415.2 in stage 0.0 (TID 672) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 252] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 415.3 in stage 0.0 (TID 876, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 192.1 in stage 0.0 (TID 677) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 253] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 192.2 in stage 0.0 (TID 877, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 423.2 in stage 0.0 (TID 624) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 254] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 423.3 in stage 0.0 (TID 878, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 468.0 in stage 0.0 (TID 541) in 3009 ms on jg1-w-79.c.maclab-ukbb.internal (executor 45) (224/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 618.0 in stage 0.0 (TID 879, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 618, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 619.0 in stage 0.0 (TID 880, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 619, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 140.1 in stage 0.0 (TID 558) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 255] 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 492.0 in stage 0.0 (TID 588) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 256] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 492.1 in stage 0.0 (TID 881, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 350.0 in stage 0.0 (TID 356) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 257] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 350.1 in stage 0.0 (TID 882, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 350, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 314.0 in stage 0.0 (TID 320) in 9721 ms on jg1-w-46.c.maclab-ukbb.internal (executor 156) (225/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 140.2 in stage 0.0 (TID 883, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 166.1 in stage 0.0 (TID 598) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 258] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 166.2 in stage 0.0 (TID 884, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 465.0 in stage 0.0 (TID 534) in 3168 ms on jg1-w-21.c.maclab-ukbb.internal (executor 47) (226/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 620.0 in stage 0.0 (TID 885, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 620, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 198.1 in stage 0.0 (TID 613) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 259] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 198.2 in stage 0.0 (TID 886, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 487.0 in stage 0.0 (TID 580) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 260] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 487.1 in stage 0.0 (TID 887, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 621.0 in stage 0.0 (TID 888, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 621, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 177.1 in stage 0.0 (TID 577) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 261] 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 169.1 in stage 0.0 (TID 591) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 262] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 169.2 in stage 0.0 (TID 889, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 218.1 in stage 0.0 (TID 639) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 263] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 218.2 in stage 0.0 (TID 890, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 345.0 in stage 0.0 (TID 351) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 264] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 345.1 in stage 0.0 (TID 891, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 52.3 in stage 0.0 (TID 634) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 265] 2020-04-02 15:10:38 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-41.c.maclab-ukbb.internal:40953 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 52.4 in stage 0.0 (TID 892, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 463.0 in stage 0.0 (TID 527) in 3326 ms on jg1-w-75.c.maclab-ukbb.internal (executor 33) (227/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 177.2 in stage 0.0 (TID 893, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 109.1 in stage 0.0 (TID 638) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 266] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 109.2 in stage 0.0 (TID 894, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 491.0 in stage 0.0 (TID 586) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 267] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 491.1 in stage 0.0 (TID 895, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 622.0 in stage 0.0 (TID 896, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 622, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 209.1 in stage 0.0 (TID 560) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 268] 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 275.1 in stage 0.0 (TID 719) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 269] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 275.2 in stage 0.0 (TID 897, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 486.0 in stage 0.0 (TID 579) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 270] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 486.1 in stage 0.0 (TID 898, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 322.0 in stage 0.0 (TID 328) in 9685 ms on jg1-w-24.c.maclab-ukbb.internal (executor 182) (228/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 209.2 in stage 0.0 (TID 899, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 39.2 in stage 0.0 (TID 632) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 271] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 39.3 in stage 0.0 (TID 900, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 217.1 in stage 0.0 (TID 700) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 272] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 217.2 in stage 0.0 (TID 901, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 485.0 in stage 0.0 (TID 570) in 2973 ms on jg1-w-62.c.maclab-ukbb.internal (executor 2) (229/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 623.0 in stage 0.0 (TID 902, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 623, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-66.c.maclab-ukbb.internal:33471 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 444.1 in stage 0.0 (TID 662) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 273] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 444.2 in stage 0.0 (TID 903, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 477.0 in stage 0.0 (TID 559) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 274] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 477.1 in stage 0.0 (TID 904, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 477, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 544.0 in stage 0.0 (TID 705) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 275] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 544.1 in stage 0.0 (TID 905, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 473.0 in stage 0.0 (TID 547) in 3140 ms on jg1-w-21.c.maclab-ukbb.internal (executor 47) (230/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 624.0 in stage 0.0 (TID 906, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 624, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 434.0 in stage 0.0 (TID 469) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 276] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 434.1 in stage 0.0 (TID 907, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 434, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 311.0 in stage 0.0 (TID 316) in 10297 ms on jg1-w-44.c.maclab-ukbb.internal (executor 139) (231/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 625.0 in stage 0.0 (TID 908, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 157.2 in stage 0.0 (TID 748) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 277] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 157.3 in stage 0.0 (TID 909, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 282.1 in stage 0.0 (TID 679) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 278] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 282.2 in stage 0.0 (TID 910, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 49.2 in stage 0.0 (TID 608) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 279] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 49.3 in stage 0.0 (TID 911, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 502.0 in stage 0.0 (TID 617) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 280] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 502.1 in stage 0.0 (TID 912, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 185.1 in stage 0.0 (TID 695) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 281] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 185.2 in stage 0.0 (TID 913, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 246.1 in stage 0.0 (TID 621) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 282] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 246.2 in stage 0.0 (TID 914, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 489.0 in stage 0.0 (TID 583) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 283] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 489.1 in stage 0.0 (TID 915, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 488.0 in stage 0.0 (TID 581) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 284] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 488.1 in stage 0.0 (TID 916, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 164.1 in stage 0.0 (TID 592) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 285] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 164.2 in stage 0.0 (TID 917, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 527.0 in stage 0.0 (TID 661) in 2147 ms on jg1-w-7.c.maclab-ukbb.internal (executor 78) (232/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 626.0 in stage 0.0 (TID 918, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 626, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 257.1 in stage 0.0 (TID 654) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 286] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 257.2 in stage 0.0 (TID 919, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 497.0 in stage 0.0 (TID 609) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 287] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 497.1 in stage 0.0 (TID 920, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 358.0 in stage 0.0 (TID 364) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 288] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 358.1 in stage 0.0 (TID 921, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 358, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 480.0 in stage 0.0 (TID 564) in 3123 ms on jg1-w-38.c.maclab-ukbb.internal (executor 48) (233/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 627.0 in stage 0.0 (TID 922, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 515.0 in stage 0.0 (TID 642) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 289] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 515.1 in stage 0.0 (TID 923, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 515, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 500.0 in stage 0.0 (TID 612) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 290] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 500.1 in stage 0.0 (TID 924, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 186.1 in stage 0.0 (TID 685) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 291] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 186.2 in stage 0.0 (TID 925, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 359.0 in stage 0.0 (TID 365) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 292] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 359.1 in stage 0.0 (TID 926, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 354.0 in stage 0.0 (TID 360) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 293] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 354.1 in stage 0.0 (TID 927, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 628.0 in stage 0.0 (TID 928, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 629.0 in stage 0.0 (TID 929, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 629, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 156.2 in stage 0.0 (TID 744) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 294] 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 261.0 in stage 0.0 (TID 266) in 11194 ms on jg1-w-94.c.maclab-ukbb.internal (executor 131) (234/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 495.0 in stage 0.0 (TID 605) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 295] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 495.1 in stage 0.0 (TID 930, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 483.0 in stage 0.0 (TID 567) in 3147 ms on jg1-w-71.c.maclab-ukbb.internal (executor 56) (235/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 156.3 in stage 0.0 (TID 931, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 568.0 in stage 0.0 (TID 747) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 296] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 568.1 in stage 0.0 (TID 932, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 344.0 in stage 0.0 (TID 350) in 9790 ms on jg1-w-55.c.maclab-ukbb.internal (executor 189) (236/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 630.0 in stage 0.0 (TID 933, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 630, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 343.0 in stage 0.0 (TID 349) in 9821 ms on jg1-w-55.c.maclab-ukbb.internal (executor 165) (237/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 631.0 in stage 0.0 (TID 934, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 631, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 632.0 in stage 0.0 (TID 935, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 632, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 392.0 in stage 0.0 (TID 398) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 297] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 392.1 in stage 0.0 (TID 936, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 332.0 in stage 0.0 (TID 338) in 9895 ms on jg1-w-17.c.maclab-ukbb.internal (executor 166) (238/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 353.0 in stage 0.0 (TID 359) in 9734 ms on jg1-w-14.c.maclab-ukbb.internal (executor 186) (239/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 633.0 in stage 0.0 (TID 937, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 633, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 329.0 in stage 0.0 (TID 335) in 9902 ms on jg1-w-31.c.maclab-ukbb.internal (executor 158) (240/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 634.0 in stage 0.0 (TID 938, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 634, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 288.1 in stage 0.0 (TID 753) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 298] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 288.2 in stage 0.0 (TID 939, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 125.1 in stage 0.0 (TID 618) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 299] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 125.2 in stage 0.0 (TID 940, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 290.0 in stage 0.0 (TID 295) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 300] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 290.1 in stage 0.0 (TID 941, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 290, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 335.0 in stage 0.0 (TID 341) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 301] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 335.1 in stage 0.0 (TID 942, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 499.0 in stage 0.0 (TID 611) in 2751 ms on jg1-w-51.c.maclab-ukbb.internal (executor 50) (241/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 635.0 in stage 0.0 (TID 943, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 635, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 498.0 in stage 0.0 (TID 610) in 2773 ms on jg1-w-2.c.maclab-ukbb.internal (executor 79) (242/30000) 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 636.0 in stage 0.0 (TID 944, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 636, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 197.1 in stage 0.0 (TID 602) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 302] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 197.2 in stage 0.0 (TID 945, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Lost task 154.6 in stage 0.0 (TID 784) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 303] 2020-04-02 15:10:38 TaskSetManager: INFO: Starting task 154.7 in stage 0.0 (TID 946, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:38 TaskSetManager: INFO: Finished task 341.0 in stage 0.0 (TID 347) in 9885 ms on jg1-w-18.c.maclab-ukbb.internal (executor 197) (243/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 637.0 in stage 0.0 (TID 947, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 637, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 490.0 in stage 0.0 (TID 584) in 3089 ms on jg1-w-68.c.maclab-ukbb.internal (executor 95) (244/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 638.0 in stage 0.0 (TID 948, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 638, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 526.0 in stage 0.0 (TID 660) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 304] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 526.1 in stage 0.0 (TID 949, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 526, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 426.2 in stage 0.0 (TID 726) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 305] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 426.3 in stage 0.0 (TID 950, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 408.3 in stage 0.0 (TID 762) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 306] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 408.4 in stage 0.0 (TID 951, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 142.1 in stage 0.0 (TID 721) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 307] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 142.2 in stage 0.0 (TID 952, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 464.0 in stage 0.0 (TID 529) in 3671 ms on jg1-w-30.c.maclab-ukbb.internal (executor 81) (245/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 639.0 in stage 0.0 (TID 953, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 639, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 310.1 in stage 0.0 (TID 734) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 308] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 310.2 in stage 0.0 (TID 954, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 339.0 in stage 0.0 (TID 345) in 9961 ms on jg1-w-18.c.maclab-ukbb.internal (executor 172) (246/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 640.0 in stage 0.0 (TID 955, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 640, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 428.1 in stage 0.0 (TID 596) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 309] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 428.2 in stage 0.0 (TID 956, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 537.0 in stage 0.0 (TID 683) in 2233 ms on jg1-w-56.c.maclab-ukbb.internal (executor 22) (247/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 641.0 in stage 0.0 (TID 957, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 641, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 111.1 in stage 0.0 (TID 676) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 310] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 111.2 in stage 0.0 (TID 958, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 338.0 in stage 0.0 (TID 344) in 9985 ms on jg1-w-18.c.maclab-ukbb.internal (executor 172) (248/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 642.0 in stage 0.0 (TID 959, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 642, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 173.1 in stage 0.0 (TID 669) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 311] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 173.2 in stage 0.0 (TID 960, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 107.1 in stage 0.0 (TID 587) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 312] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 107.2 in stage 0.0 (TID 961, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 281.1 in stage 0.0 (TID 680) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 313] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 281.2 in stage 0.0 (TID 962, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 361.0 in stage 0.0 (TID 367) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 314] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 361.1 in stage 0.0 (TID 963, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 361, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 435.1 in stage 0.0 (TID 691) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 315] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 435.2 in stage 0.0 (TID 964, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 530.0 in stage 0.0 (TID 665) in 2402 ms on jg1-w-95.c.maclab-ukbb.internal (executor 118) (249/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 643.0 in stage 0.0 (TID 965, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 643, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 27.3 in stage 0.0 (TID 703) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 316] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 27.4 in stage 0.0 (TID 966, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 518.0 in stage 0.0 (TID 648) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 317] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 518.1 in stage 0.0 (TID 967, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 439.1 in stage 0.0 (TID 643) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 318] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 439.2 in stage 0.0 (TID 968, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 644.0 in stage 0.0 (TID 969, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 31.3 in stage 0.0 (TID 620) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 319] 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 399.4 in stage 0.0 (TID 749) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 320] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 399.5 in stage 0.0 (TID 970, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 484.0 in stage 0.0 (TID 569) in 3384 ms on jg1-w-71.c.maclab-ukbb.internal (executor 56) (250/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 31.4 in stage 0.0 (TID 971, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 397.0 in stage 0.0 (TID 403) in 9412 ms on jg1-w-59.c.maclab-ukbb.internal (executor 190) (251/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 645.0 in stage 0.0 (TID 972, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 645, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 396.0 in stage 0.0 (TID 402) in 9427 ms on jg1-w-59.c.maclab-ukbb.internal (executor 164) (252/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 646.0 in stage 0.0 (TID 973, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 646, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 647.0 in stage 0.0 (TID 974, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 647, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 384.0 in stage 0.0 (TID 390) in 9618 ms on jg1-w-88.c.maclab-ukbb.internal (executor 178) (253/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 57.2 in stage 0.0 (TID 640) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 321] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 57.3 in stage 0.0 (TID 975, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 506.0 in stage 0.0 (TID 627) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 322] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 506.1 in stage 0.0 (TID 976, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 356.0 in stage 0.0 (TID 362) in 9956 ms on jg1-w-34.c.maclab-ukbb.internal (executor 188) (254/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 648.0 in stage 0.0 (TID 977, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 648, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 395.0 in stage 0.0 (TID 401) in 9454 ms on jg1-w-59.c.maclab-ukbb.internal (executor 164) (255/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 649.0 in stage 0.0 (TID 978, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 649, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 520.0 in stage 0.0 (TID 653) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 323] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 520.1 in stage 0.0 (TID 979, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 342.0 in stage 0.0 (TID 348) in 10093 ms on jg1-w-55.c.maclab-ukbb.internal (executor 165) (256/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 650.0 in stage 0.0 (TID 980, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 650, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 321.0 in stage 0.0 (TID 327) in 10188 ms on jg1-w-17.c.maclab-ukbb.internal (executor 191) (257/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 651.0 in stage 0.0 (TID 981, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 651, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 536.0 in stage 0.0 (TID 681) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 324] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 536.1 in stage 0.0 (TID 982, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 292.1 in stage 0.0 (TID 699) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 325] 2020-04-02 15:10:39 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on jg1-w-66.c.maclab-ukbb.internal:46351 (size: 3.5 MB, free: 2.7 GB) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 292.2 in stage 0.0 (TID 983, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 143.1 in stage 0.0 (TID 731) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 326] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 143.2 in stage 0.0 (TID 984, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 534.0 in stage 0.0 (TID 671) in 2474 ms on jg1-w-80.c.maclab-ukbb.internal (executor 18) (258/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 652.0 in stage 0.0 (TID 985, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 652, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 370.0 in stage 0.0 (TID 376) in 9815 ms on jg1-w-10.c.maclab-ukbb.internal (executor 160) (259/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 653.0 in stage 0.0 (TID 986, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 653, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 274.1 in stage 0.0 (TID 698) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 327] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 274.2 in stage 0.0 (TID 987, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 508.0 in stage 0.0 (TID 629) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 328] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 508.1 in stage 0.0 (TID 988, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 508, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 377.0 in stage 0.0 (TID 383) in 9815 ms on jg1-w-10.c.maclab-ukbb.internal (executor 185) (260/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 654.0 in stage 0.0 (TID 989, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 654, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 318.0 in stage 0.0 (TID 324) in 10238 ms on jg1-w-24.c.maclab-ukbb.internal (executor 157) (261/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 655.0 in stage 0.0 (TID 990, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 655, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 352.0 in stage 0.0 (TID 358) in 10058 ms on jg1-w-14.c.maclab-ukbb.internal (executor 186) (262/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 656.0 in stage 0.0 (TID 991, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 656, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 289.1 in stage 0.0 (TID 755) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 329] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 289.2 in stage 0.0 (TID 992, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 194.2 in stage 0.0 (TID 795) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 330] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 194.3 in stage 0.0 (TID 993, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 442.1 in stage 0.0 (TID 670) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 331] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 442.2 in stage 0.0 (TID 994, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 315.0 in stage 0.0 (TID 321) in 10408 ms on jg1-w-46.c.maclab-ukbb.internal (executor 156) (263/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 657.0 in stage 0.0 (TID 995, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 657, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 470.0 in stage 0.0 (TID 544) in 3704 ms on jg1-w-75.c.maclab-ukbb.internal (executor 33) (264/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 658.0 in stage 0.0 (TID 996, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 658, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 277.1 in stage 0.0 (TID 702) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 332] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 277.2 in stage 0.0 (TID 997, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 141.1 in stage 0.0 (TID 604) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 333] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 141.2 in stage 0.0 (TID 998, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 141, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 382.0 in stage 0.0 (TID 388) in 9776 ms on jg1-w-88.c.maclab-ukbb.internal (executor 152) (265/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 659.0 in stage 0.0 (TID 999, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 659, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 376.0 in stage 0.0 (TID 382) in 9899 ms on jg1-w-10.c.maclab-ukbb.internal (executor 185) (266/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 660.0 in stage 0.0 (TID 1000, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 660, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 449.2 in stage 0.0 (TID 778) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 334] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 449.3 in stage 0.0 (TID 1001, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 195.2 in stage 0.0 (TID 767) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 335] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 195.3 in stage 0.0 (TID 1002, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 390.0 in stage 0.0 (TID 396) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 336] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 390.1 in stage 0.0 (TID 1003, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 224.1 in stage 0.0 (TID 652) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 337] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 224.2 in stage 0.0 (TID 1004, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 371.0 in stage 0.0 (TID 377) in 9938 ms on jg1-w-10.c.maclab-ukbb.internal (executor 160) (267/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 661.0 in stage 0.0 (TID 1005, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 661, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 662.0 in stage 0.0 (TID 1006, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 662, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 316.0 in stage 0.0 (TID 322) in 10461 ms on jg1-w-46.c.maclab-ukbb.internal (executor 181) (268/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 47.3 in stage 0.0 (TID 785) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 338] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 47.4 in stage 0.0 (TID 1007, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 50.2 in stage 0.0 (TID 701) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 339] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 50.3 in stage 0.0 (TID 1008, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 391.0 in stage 0.0 (TID 397) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 340] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 391.1 in stage 0.0 (TID 1009, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 391, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 199.2 in stage 0.0 (TID 743) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 341] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 199.3 in stage 0.0 (TID 1010, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 75.2 in stage 0.0 (TID 682) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 342] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 75.3 in stage 0.0 (TID 1011, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 153.1 in stage 0.0 (TID 688) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 343] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 153.2 in stage 0.0 (TID 1012, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 56.2 in stage 0.0 (TID 650) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 344] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 56.3 in stage 0.0 (TID 1013, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 158.2 in stage 0.0 (TID 756) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 345] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 158.3 in stage 0.0 (TID 1014, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 546.0 in stage 0.0 (TID 708) in 2314 ms on jg1-w-50.c.maclab-ukbb.internal (executor 19) (269/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 663.0 in stage 0.0 (TID 1015, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 663, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 160.1 in stage 0.0 (TID 651) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 346] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 160.2 in stage 0.0 (TID 1016, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 360.0 in stage 0.0 (TID 366) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 347] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 360.1 in stage 0.0 (TID 1017, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 327.0 in stage 0.0 (TID 333) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 348] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 327.1 in stage 0.0 (TID 1018, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 364.0 in stage 0.0 (TID 370) in 10068 ms on jg1-w-27.c.maclab-ukbb.internal (executor 149) (270/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 664.0 in stage 0.0 (TID 1019, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 664, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 348.0 in stage 0.0 (TID 354) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 349] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 348.1 in stage 0.0 (TID 1020, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 457.0 in stage 0.0 (TID 516) in 4315 ms on jg1-w-9.c.maclab-ukbb.internal (executor 121) (271/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 665.0 in stage 0.0 (TID 1021, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 665, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 365.0 in stage 0.0 (TID 371) in 10077 ms on jg1-w-27.c.maclab-ukbb.internal (executor 149) (272/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 666.0 in stage 0.0 (TID 1022, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 666, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 366.0 in stage 0.0 (TID 372) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 350] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 366.1 in stage 0.0 (TID 1023, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 479.0 in stage 0.0 (TID 562) in 3734 ms on jg1-w-64.c.maclab-ukbb.internal (executor 70) (273/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 667.0 in stage 0.0 (TID 1024, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 667, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 20.3 in stage 0.0 (TID 686) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 351] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 20.4 in stage 0.0 (TID 1025, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 475.1 in stage 0.0 (TID 779) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 352] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 475.2 in stage 0.0 (TID 1026, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 357.0 in stage 0.0 (TID 363) in 10254 ms on jg1-w-34.c.maclab-ukbb.internal (executor 188) (274/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 668.0 in stage 0.0 (TID 1027, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 668, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 303.0 in stage 0.0 (TID 308) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 353] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 303.1 in stage 0.0 (TID 1028, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 493.0 in stage 0.0 (TID 597) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 354] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 493.1 in stage 0.0 (TID 1029, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 333.1 in stage 0.0 (TID 832) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 355] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 333.2 in stage 0.0 (TID 1030, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 331.1 in stage 0.0 (TID 818) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 356] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 331.2 in stage 0.0 (TID 1031, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 271.0 in stage 0.0 (TID 276) in 11772 ms on jg1-w-77.c.maclab-ukbb.internal (executor 128) (275/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 669.0 in stage 0.0 (TID 1032, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 669, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 381.0 in stage 0.0 (TID 387) in 10013 ms on jg1-w-57.c.maclab-ukbb.internal (executor 177) (276/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 670.0 in stage 0.0 (TID 1033, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 670, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 481.0 in stage 0.0 (TID 565) in 3788 ms on jg1-w-23.c.maclab-ukbb.internal (executor 29) (277/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 671.0 in stage 0.0 (TID 1034, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 671, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 188.2 in stage 0.0 (TID 739) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 357] 2020-04-02 15:10:39 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-66.c.maclab-ukbb.internal:33471 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 188.3 in stage 0.0 (TID 1035, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 476.1 in stage 0.0 (TID 797) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 358] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 476.2 in stage 0.0 (TID 1036, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 248.1 in stage 0.0 (TID 780) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 359] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 248.2 in stage 0.0 (TID 1037, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 106.2 in stage 0.0 (TID 813) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 360] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 106.3 in stage 0.0 (TID 1038, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 504.1 in stage 0.0 (TID 824) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 361] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 504.2 in stage 0.0 (TID 1039, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 362.0 in stage 0.0 (TID 368) in 10206 ms on jg1-w-27.c.maclab-ukbb.internal (executor 175) (278/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 672.0 in stage 0.0 (TID 1040, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 672, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 673.0 in stage 0.0 (TID 1041, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 51.2 in stage 0.0 (TID 673) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 362] 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 91.2 in stage 0.0 (TID 637) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 363] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 91.3 in stage 0.0 (TID 1042, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 598.0 in stage 0.0 (TID 811) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 364] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 598.1 in stage 0.0 (TID 1043, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 511.0 in stage 0.0 (TID 633) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 365] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 511.1 in stage 0.0 (TID 1044, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 167.2 in stage 0.0 (TID 732) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 366] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 167.3 in stage 0.0 (TID 1045, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 510.0 in stage 0.0 (TID 631) in 3164 ms on jg1-w-80.c.maclab-ukbb.internal (executor 13) (279/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 51.3 in stage 0.0 (TID 1046, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 407.3 in stage 0.0 (TID 786) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 367] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 407.4 in stage 0.0 (TID 1047, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 674.0 in stage 0.0 (TID 1048, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 674, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 58.3 in stage 0.0 (TID 675) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 368] 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 369.0 in stage 0.0 (TID 375) in 10191 ms on jg1-w-58.c.maclab-ukbb.internal (executor 195) (280/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 58.4 in stage 0.0 (TID 1049, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 675.0 in stage 0.0 (TID 1050, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 675, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 554.0 in stage 0.0 (TID 718) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 369] 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 276.1 in stage 0.0 (TID 783) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 370] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 276.2 in stage 0.0 (TID 1051, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 124.1 in stage 0.0 (TID 724) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 371] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 124.2 in stage 0.0 (TID 1052, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 551.0 in stage 0.0 (TID 714) in 2495 ms on jg1-w-81.c.maclab-ukbb.internal (executor 111) (281/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 554.1 in stage 0.0 (TID 1053, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 128.1 in stage 0.0 (TID 736) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 372] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 128.2 in stage 0.0 (TID 1054, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 334.0 in stage 0.0 (TID 340) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 373] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 334.1 in stage 0.0 (TID 1055, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 676.0 in stage 0.0 (TID 1056, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 676, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 528.0 in stage 0.0 (TID 663) in 2975 ms on jg1-w-8.c.maclab-ukbb.internal (executor 180) (282/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 242.1 in stage 0.0 (TID 733) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 374] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 242.2 in stage 0.0 (TID 1057, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 532.0 in stage 0.0 (TID 667) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 375] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 532.1 in stage 0.0 (TID 1058, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 532, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 337.0 in stage 0.0 (TID 343) in 10644 ms on jg1-w-36.c.maclab-ukbb.internal (executor 162) (283/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 677.0 in stage 0.0 (TID 1059, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 677, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 678.0 in stage 0.0 (TID 1060, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 678, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 406.3 in stage 0.0 (TID 759) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 376] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 406.4 in stage 0.0 (TID 1061, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 507.0 in stage 0.0 (TID 628) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 377] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 507.1 in stage 0.0 (TID 1062, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 64.2 in stage 0.0 (TID 626) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 378] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 64.3 in stage 0.0 (TID 1063, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 538.0 in stage 0.0 (TID 687) in 2819 ms on jg1-w-6.c.maclab-ukbb.internal (executor 153) (284/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 363.0 in stage 0.0 (TID 369) in 10326 ms on jg1-w-27.c.maclab-ukbb.internal (executor 175) (285/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 679.0 in stage 0.0 (TID 1064, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 679, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 680.0 in stage 0.0 (TID 1065, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 81.3 in stage 0.0 (TID 843) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 379] 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 193.2 in stage 0.0 (TID 790) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 380] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 193.3 in stage 0.0 (TID 1066, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 63.3 in stage 0.0 (TID 704) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 381] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 63.4 in stage 0.0 (TID 1067, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 509.0 in stage 0.0 (TID 630) in 3302 ms on jg1-w-63.c.maclab-ukbb.internal (executor 87) (286/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 81.4 in stage 0.0 (TID 1068, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 351.1 in stage 0.0 (TID 837) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 382] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 351.2 in stage 0.0 (TID 1069, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 227.1 in stage 0.0 (TID 725) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 383] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 227.2 in stage 0.0 (TID 1070, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 227, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 170.2 in stage 0.0 (TID 855) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 384] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 170.3 in stage 0.0 (TID 1071, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 578.0 in stage 0.0 (TID 766) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 385] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 578.1 in stage 0.0 (TID 1072, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 578, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 681.0 in stage 0.0 (TID 1073, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 681, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 372.0 in stage 0.0 (TID 378) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 386] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 372.1 in stage 0.0 (TID 1074, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 374.0 in stage 0.0 (TID 380) in 10363 ms on jg1-w-47.c.maclab-ukbb.internal (executor 169) (287/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 682.0 in stage 0.0 (TID 1075, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 682, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 683.0 in stage 0.0 (TID 1076, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 683, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 393.0 in stage 0.0 (TID 399) in 10170 ms on jg1-w-74.c.maclab-ukbb.internal (executor 193) (288/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 684.0 in stage 0.0 (TID 1077, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 684, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 685.0 in stage 0.0 (TID 1078, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 685, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 418.2 in stage 0.0 (TID 647) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 387] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 418.3 in stage 0.0 (TID 1079, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 512.0 in stage 0.0 (TID 635) in 3345 ms on jg1-w-75.c.maclab-ukbb.internal (executor 54) (289/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 686.0 in stage 0.0 (TID 1080, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 686, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 687.0 in stage 0.0 (TID 1081, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 687, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 355.1 in stage 0.0 (TID 842) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 388] 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 427.2 in stage 0.0 (TID 777) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 389] 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 519.0 in stage 0.0 (TID 649) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 390] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 519.1 in stage 0.0 (TID 1082, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 593.0 in stage 0.0 (TID 804) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 391] 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 588.0 in stage 0.0 (TID 794) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 392] 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 424.1 in stage 0.0 (TID 594) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 393] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 424.2 in stage 0.0 (TID 1083, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 424, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 522.0 in stage 0.0 (TID 656) in 3186 ms on jg1-w-35.c.maclab-ukbb.internal (executor 66) (290/30000) 2020-04-02 15:10:39 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on jg1-w-66.c.maclab-ukbb.internal:46351 (size: 947.0 B, free: 2.7 GB) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 588.1 in stage 0.0 (TID 1084, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 588, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 521.0 in stage 0.0 (TID 655) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 394] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 521.1 in stage 0.0 (TID 1085, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 521, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 305.0 in stage 0.0 (TID 310) in 11392 ms on jg1-w-43.c.maclab-ukbb.internal (executor 129) (291/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 593.1 in stage 0.0 (TID 1086, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 225.2 in stage 0.0 (TID 774) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 395] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 225.3 in stage 0.0 (TID 1087, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 529.0 in stage 0.0 (TID 664) in 3137 ms on jg1-w-68.c.maclab-ukbb.internal (executor 64) (292/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 427.3 in stage 0.0 (TID 1088, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 355.2 in stage 0.0 (TID 1089, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 380.0 in stage 0.0 (TID 386) in 10331 ms on jg1-w-57.c.maclab-ukbb.internal (executor 177) (293/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 550.0 in stage 0.0 (TID 713) in 2713 ms on jg1-w-19.c.maclab-ukbb.internal (executor 101) (294/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 688.0 in stage 0.0 (TID 1090, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 688, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 566.0 in stage 0.0 (TID 742) in 2489 ms on jg1-w-53.c.maclab-ukbb.internal (executor 114) (295/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 689.0 in stage 0.0 (TID 1091, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 689, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 597.0 in stage 0.0 (TID 809) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 396] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 597.1 in stage 0.0 (TID 1092, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 690.0 in stage 0.0 (TID 1093, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 378.0 in stage 0.0 (TID 384) in 10366 ms on jg1-w-57.c.maclab-ukbb.internal (executor 151) (296/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 494.0 in stage 0.0 (TID 600) in 3776 ms on jg1-w-11.c.maclab-ukbb.internal (executor 73) (297/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 691.0 in stage 0.0 (TID 1094, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 691, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 692.0 in stage 0.0 (TID 1095, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 692, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 386.0 in stage 0.0 (TID 392) in 10310 ms on jg1-w-72.c.maclab-ukbb.internal (executor 179) (298/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 414.2 in stage 0.0 (TID 745) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 397] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 414.3 in stage 0.0 (TID 1096, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 1.6 in stage 0.0 (TID 834) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 398] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 1.7 in stage 0.0 (TID 1097, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 523.0 in stage 0.0 (TID 657) in 3247 ms on jg1-w-28.c.maclab-ukbb.internal (executor 69) (299/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 693.0 in stage 0.0 (TID 1098, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 693, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 346.0 in stage 0.0 (TID 352) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 399] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 346.1 in stage 0.0 (TID 1099, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 694.0 in stage 0.0 (TID 1100, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 609.0 in stage 0.0 (TID 848) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 400] 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 583.0 in stage 0.0 (TID 776) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 401] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 583.1 in stage 0.0 (TID 1101, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 583, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 347.0 in stage 0.0 (TID 353) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 402] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 347.1 in stage 0.0 (TID 1102, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 513.1 in stage 0.0 (TID 849) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 403] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 513.2 in stage 0.0 (TID 1103, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 383.0 in stage 0.0 (TID 389) in 10406 ms on jg1-w-88.c.maclab-ukbb.internal (executor 152) (300/30000) 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 609.1 in stage 0.0 (TID 1104, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Lost task 52.4 in stage 0.0 (TID 892) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 404] 2020-04-02 15:10:39 TaskSetManager: INFO: Starting task 52.5 in stage 0.0 (TID 1105, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:39 TaskSetManager: INFO: Finished task 466.0 in stage 0.0 (TID 535) in 4514 ms on jg1-w-7.c.maclab-ukbb.internal (executor 120) (301/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 695.0 in stage 0.0 (TID 1106, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 695, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 584.0 in stage 0.0 (TID 781) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 405] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 584.1 in stage 0.0 (TID 1107, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 373.0 in stage 0.0 (TID 379) in 10558 ms on jg1-w-47.c.maclab-ukbb.internal (executor 194) (302/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 696.0 in stage 0.0 (TID 1108, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 696, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 472.0 in stage 0.0 (TID 546) in 4401 ms on jg1-w-48.c.maclab-ukbb.internal (executor 67) (303/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 697.0 in stage 0.0 (TID 1109, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 697, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 379.0 in stage 0.0 (TID 385) in 10494 ms on jg1-w-57.c.maclab-ukbb.internal (executor 151) (304/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 698.0 in stage 0.0 (TID 1110, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 698, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 113.2 in stage 0.0 (TID 787) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 406] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 113.3 in stage 0.0 (TID 1111, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 514.0 in stage 0.0 (TID 641) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 407] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 514.1 in stage 0.0 (TID 1112, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 514, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 596.0 in stage 0.0 (TID 808) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 408] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 596.1 in stage 0.0 (TID 1113, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 304.0 in stage 0.0 (TID 309) in 11632 ms on jg1-w-96.c.maclab-ukbb.internal (executor 98) (305/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 699.0 in stage 0.0 (TID 1114, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 700.0 in stage 0.0 (TID 1115, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 700, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 562.0 in stage 0.0 (TID 737) in 2720 ms on jg1-w-52.c.maclab-ukbb.internal (executor 106) (306/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 701.0 in stage 0.0 (TID 1116, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 701, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 525.0 in stage 0.0 (TID 659) in 3385 ms on jg1-w-91.c.maclab-ukbb.internal (executor 91) (307/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 299.0 in stage 0.0 (TID 304) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 409] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 299.1 in stage 0.0 (TID 1117, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 299, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 205.2 in stage 0.0 (TID 858) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 410] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 205.3 in stage 0.0 (TID 1118, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 169.2 in stage 0.0 (TID 889) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 411] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 169.3 in stage 0.0 (TID 1119, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 220.2 in stage 0.0 (TID 840) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 412] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 220.3 in stage 0.0 (TID 1120, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 702.0 in stage 0.0 (TID 1121, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 702, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 703.0 in stage 0.0 (TID 1122, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 703, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 704.0 in stage 0.0 (TID 1123, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 704, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 543.0 in stage 0.0 (TID 696) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 413] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 543.1 in stage 0.0 (TID 1124, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 309.1 in stage 0.0 (TID 815) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 414] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 309.2 in stage 0.0 (TID 1125, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 309, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 705.0 in stage 0.0 (TID 1126, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 705, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 706.0 in stage 0.0 (TID 1127, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 706, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 707.0 in stage 0.0 (TID 1128, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 557.0 in stage 0.0 (TID 727) in 2835 ms on jg1-w-39.c.maclab-ukbb.internal (executor 137) (308/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 157.3 in stage 0.0 (TID 909) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 415] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 187.2 in stage 0.0 (TID 754) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 416] 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 575.0 in stage 0.0 (TID 761) in 2670 ms on jg1-w-30.c.maclab-ukbb.internal (executor 124) (309/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 187.3 in stage 0.0 (TID 1129, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 298.0 in stage 0.0 (TID 303) in 11904 ms on jg1-w-54.c.maclab-ukbb.internal (executor 134) (310/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 156.3 in stage 0.0 (TID 931) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 417] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 415.3 in stage 0.0 (TID 876) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 418] 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 573.0 in stage 0.0 (TID 758) in 2678 ms on jg1-w-60.c.maclab-ukbb.internal (executor 20) (311/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 415.4 in stage 0.0 (TID 1130, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 156.4 in stage 0.0 (TID 1131, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 301.0 in stage 0.0 (TID 306) in 11745 ms on jg1-w-96.c.maclab-ukbb.internal (executor 132) (312/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 387.0 in stage 0.0 (TID 393) in 10541 ms on jg1-w-72.c.maclab-ukbb.internal (executor 179) (313/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 157.4 in stage 0.0 (TID 1132, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 202.2 in stage 0.0 (TID 875) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 419] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 202.3 in stage 0.0 (TID 1133, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 540.0 in stage 0.0 (TID 692) in 3156 ms on jg1-w-56.c.maclab-ukbb.internal (executor 17) (314/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 708.0 in stage 0.0 (TID 1134, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 708, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 320.0 in stage 0.0 (TID 326) in 11098 ms on jg1-w-17.c.maclab-ukbb.internal (executor 191) (315/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 709.0 in stage 0.0 (TID 1135, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 710.0 in stage 0.0 (TID 1136, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 496.1 in stage 0.0 (TID 851) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 420] 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 302.0 in stage 0.0 (TID 307) in 11759 ms on jg1-w-96.c.maclab-ukbb.internal (executor 132) (316/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 496.2 in stage 0.0 (TID 1137, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 151.2 in stage 0.0 (TID 833) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 421] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 151.3 in stage 0.0 (TID 1138, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 326.1 in stage 0.0 (TID 846) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 422] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 326.2 in stage 0.0 (TID 1139, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 326, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 300.0 in stage 0.0 (TID 305) in 11922 ms on jg1-w-54.c.maclab-ukbb.internal (executor 100) (317/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 711.0 in stage 0.0 (TID 1140, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 711, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 275.2 in stage 0.0 (TID 897) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 423] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 275.3 in stage 0.0 (TID 1141, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 547.0 in stage 0.0 (TID 710) in 3023 ms on jg1-w-83.c.maclab-ukbb.internal (executor 145) (318/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 712.0 in stage 0.0 (TID 1142, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 712, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 556.0 in stage 0.0 (TID 723) in 2901 ms on jg1-w-40.c.maclab-ukbb.internal (executor 72) (319/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 713.0 in stage 0.0 (TID 1143, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 552.0 in stage 0.0 (TID 715) in 2984 ms on jg1-w-93.c.maclab-ukbb.internal (executor 113) (320/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 714.0 in stage 0.0 (TID 1144, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 714, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 270.1 in stage 0.0 (TID 775) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 424] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 270.2 in stage 0.0 (TID 1145, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 270, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 367.0 in stage 0.0 (TID 373) in 10735 ms on jg1-w-58.c.maclab-ukbb.internal (executor 170) (321/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 715.0 in stage 0.0 (TID 1146, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 715, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 505.1 in stage 0.0 (TID 852) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 425] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 505.2 in stage 0.0 (TID 1147, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 590.0 in stage 0.0 (TID 800) in 2364 ms on jg1-w-0.c.maclab-ukbb.internal (executor 112) (322/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 716.0 in stage 0.0 (TID 1148, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 716, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: WARN: Lost task 241.1 in stage 0.0 (TID 770, jg1-w-50.c.maclab-ukbb.internal, executor 19): is.hail.utils.HailException: cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64} at is.hail.utils.ErrorHandling$class.fatal(ErrorHandling.scala:9) at is.hail.utils.package$.fatal(package.scala:74) at is.hail.annotations.RegionValueBuilder.setMissing(RegionValueBuilder.scala:210) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:953) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:946) at is.hail.utils.FlipbookIterator$$anon$5.advance(FlipbookIterator.scala:180) at is.hail.utils.StagingIterator.stage(FlipbookIterator.scala:61) at is.hail.utils.StagingIterator.hasNext(FlipbookIterator.scala:71) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:462) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:106) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:102) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:102) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:101) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:101) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:99) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:99) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:97) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:97) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:95) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$.writeSplitRegion(RichContextRDDRegionValue.scala:95) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:901) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:899) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310) at scala.collection.AbstractIterator.to(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289) at scala.collection.AbstractIterator.toArray(Iterator.scala:1334) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 241.2 in stage 0.0 (TID 1149, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 241, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 487.1 in stage 0.0 (TID 887) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 487.2 in stage 0.0 (TID 1150, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 564.0 in stage 0.0 (TID 740) in 2822 ms on jg1-w-97.c.maclab-ukbb.internal (executor 126) (323/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 717.0 in stage 0.0 (TID 1151, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 717, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 718.0 in stage 0.0 (TID 1152, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 502.1 in stage 0.0 (TID 912) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 567.0 in stage 0.0 (TID 746) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 3] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 567.1 in stage 0.0 (TID 1153, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 567, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 368.0 in stage 0.0 (TID 374) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 4] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 368.1 in stage 0.0 (TID 1154, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 368, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 517.1 in stage 0.0 (TID 850) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 5] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 517.2 in stage 0.0 (TID 1155, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 206.2 in stage 0.0 (TID 812) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 6] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 206.3 in stage 0.0 (TID 1156, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 502.2 in stage 0.0 (TID 1157, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 569.0 in stage 0.0 (TID 750) in 2825 ms on jg1-w-87.c.maclab-ukbb.internal (executor 86) (324/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 601.0 in stage 0.0 (TID 821) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 7] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 601.1 in stage 0.0 (TID 1158, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 115.2 in stage 0.0 (TID 763) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 8] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 115.3 in stage 0.0 (TID 1159, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 115, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 586.0 in stage 0.0 (TID 791) in 2527 ms on jg1-w-16.c.maclab-ukbb.internal (executor 34) (325/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 719.0 in stage 0.0 (TID 1160, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 39.3 in stage 0.0 (TID 900) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 9] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 39.4 in stage 0.0 (TID 1161, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 198.2 in stage 0.0 (TID 886) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 10] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 198.3 in stage 0.0 (TID 1162, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 41.2 in stage 0.0 (TID 798) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 11] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 41.3 in stage 0.0 (TID 1163, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 539.0 in stage 0.0 (TID 690) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 12] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 539.1 in stage 0.0 (TID 1164, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 539, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 585.0 in stage 0.0 (TID 789) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 13] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 585.1 in stage 0.0 (TID 1165, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 585, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 55.0 in stage 0.0 (TID 60) in 16135 ms on jg1-w-1.c.maclab-ukbb.internal (executor 80) (326/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 720.0 in stage 0.0 (TID 1166, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 720, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 545.0 in stage 0.0 (TID 707) in 3210 ms on jg1-w-62.c.maclab-ukbb.internal (executor 2) (327/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 721.0 in stage 0.0 (TID 1167, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 307.0 in stage 0.0 (TID 312) in 11881 ms on jg1-w-43.c.maclab-ukbb.internal (executor 150) (328/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 722.0 in stage 0.0 (TID 1168, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 722, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 433.1 in stage 0.0 (TID 684) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 14] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 433.2 in stage 0.0 (TID 1169, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 433, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 212.2 in stage 0.0 (TID 810) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 15] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 212.3 in stage 0.0 (TID 1170, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 594.0 in stage 0.0 (TID 805) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 16] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 594.1 in stage 0.0 (TID 1171, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 723.0 in stage 0.0 (TID 1172, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 723, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 247.2 in stage 0.0 (TID 830) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 17] 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 558.0 in stage 0.0 (TID 728) in 3070 ms on jg1-w-1.c.maclab-ukbb.internal (executor 123) (329/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 247.3 in stage 0.0 (TID 1173, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 724.0 in stage 0.0 (TID 1174, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 724, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 725.0 in stage 0.0 (TID 1175, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 725, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 726.0 in stage 0.0 (TID 1176, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 726, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 727.0 in stage 0.0 (TID 1177, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 728.0 in stage 0.0 (TID 1178, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 459.1 in stage 0.0 (TID 788) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 18] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 474.1 in stage 0.0 (TID 814) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 19] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 542.0 in stage 0.0 (TID 694) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 20] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 121.2 in stage 0.0 (TID 825) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 21] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 177.2 in stage 0.0 (TID 893) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 22] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 177.3 in stage 0.0 (TID 1179, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 559.0 in stage 0.0 (TID 729) in 3106 ms on jg1-w-33.c.maclab-ukbb.internal (executor 107) (330/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 438.1 in stage 0.0 (TID 697) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 23] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 438.2 in stage 0.0 (TID 1180, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 438, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 444.2 in stage 0.0 (TID 903) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 24] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 444.3 in stage 0.0 (TID 1181, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 121.3 in stage 0.0 (TID 1182, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 603.0 in stage 0.0 (TID 823) in 2376 ms on jg1-w-65.c.maclab-ukbb.internal (executor 7) (331/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 201.2 in stage 0.0 (TID 864) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 25] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 201.3 in stage 0.0 (TID 1183, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 462.1 in stage 0.0 (TID 847) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 26] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 462.2 in stage 0.0 (TID 1184, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 462, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 3.5 in stage 0.0 (TID 865) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 27] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 3.6 in stage 0.0 (TID 1185, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 553.0 in stage 0.0 (TID 716) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 28] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 553.1 in stage 0.0 (TID 1186, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 553, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 217.2 in stage 0.0 (TID 901) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 29] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 217.3 in stage 0.0 (TID 1187, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 443.2 in stage 0.0 (TID 828) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 30] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 443.3 in stage 0.0 (TID 1188, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 555.0 in stage 0.0 (TID 722) in 3181 ms on jg1-w-87.c.maclab-ukbb.internal (executor 86) (332/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 542.1 in stage 0.0 (TID 1189, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 542, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 328.0 in stage 0.0 (TID 334) in 11393 ms on jg1-w-31.c.maclab-ukbb.internal (executor 158) (333/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 474.2 in stage 0.0 (TID 1190, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 257.2 in stage 0.0 (TID 919) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 31] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 257.3 in stage 0.0 (TID 1191, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 426.3 in stage 0.0 (TID 950) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 32] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 426.4 in stage 0.0 (TID 1192, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 459.2 in stage 0.0 (TID 1193, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 175.2 in stage 0.0 (TID 857) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 33] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 605.0 in stage 0.0 (TID 827) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 34] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 605.1 in stage 0.0 (TID 1194, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 605, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 175.3 in stage 0.0 (TID 1195, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 549.0 in stage 0.0 (TID 712) in 3335 ms on jg1-w-32.c.maclab-ukbb.internal (executor 90) (334/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 19.2 in stage 0.0 (TID 771) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 35] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 19.3 in stage 0.0 (TID 1196, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 345.1 in stage 0.0 (TID 891) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 36] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 345.2 in stage 0.0 (TID 1197, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 729.0 in stage 0.0 (TID 1198, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 729, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 730.0 in stage 0.0 (TID 1199, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 730, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 349.0 in stage 0.0 (TID 355) in 11286 ms on jg1-w-41.c.maclab-ukbb.internal (executor 174) (335/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 209.2 in stage 0.0 (TID 899) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 37] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 409.3 in stage 0.0 (TID 709) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 38] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 409.4 in stage 0.0 (TID 1200, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 165.2 in stage 0.0 (TID 820) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 39] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 165.3 in stage 0.0 (TID 1201, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 531.0 in stage 0.0 (TID 666) in 3771 ms on jg1-w-15.c.maclab-ukbb.internal (executor 127) (336/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 209.3 in stage 0.0 (TID 1202, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 53.4 in stage 0.0 (TID 854) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 40] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 53.5 in stage 0.0 (TID 1203, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 196.2 in stage 0.0 (TID 835) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 41] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 196.3 in stage 0.0 (TID 1204, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 571.0 in stage 0.0 (TID 752) in 3096 ms on jg1-w-70.c.maclab-ukbb.internal (executor 102) (337/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 731.0 in stage 0.0 (TID 1205, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 731, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 456.0 in stage 0.0 (TID 515) in 5415 ms on jg1-w-9.c.maclab-ukbb.internal (executor 121) (338/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 732.0 in stage 0.0 (TID 1206, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 732, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 280.1 in stage 0.0 (TID 782) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 42] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 280.2 in stage 0.0 (TID 1207, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 340.1 in stage 0.0 (TID 869) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 43] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 340.2 in stage 0.0 (TID 1208, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 400.0 in stage 0.0 (TID 406) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 44] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 400.1 in stage 0.0 (TID 1209, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 581.0 in stage 0.0 (TID 772) in 3008 ms on jg1-w-97.c.maclab-ukbb.internal (executor 82) (339/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 733.0 in stage 0.0 (TID 1210, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 733, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 185.2 in stage 0.0 (TID 913) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 45] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 185.3 in stage 0.0 (TID 1211, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 560.0 in stage 0.0 (TID 730) in 3295 ms on jg1-w-12.c.maclab-ukbb.internal (executor 51) (340/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 734.0 in stage 0.0 (TID 1212, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 734, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 735.0 in stage 0.0 (TID 1213, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 735, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 441.2 in stage 0.0 (TID 859) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 46] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 354.1 in stage 0.0 (TID 927) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 47] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 354.2 in stage 0.0 (TID 1214, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 136.2 in stage 0.0 (TID 862) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 48] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 136.3 in stage 0.0 (TID 1215, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 336.0 in stage 0.0 (TID 342) in 11560 ms on jg1-w-36.c.maclab-ukbb.internal (executor 162) (341/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 441.3 in stage 0.0 (TID 1216, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 140.2 in stage 0.0 (TID 883) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 49] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 140.3 in stage 0.0 (TID 1217, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 282.2 in stage 0.0 (TID 910) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 50] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 282.3 in stage 0.0 (TID 1218, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 736.0 in stage 0.0 (TID 1219, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 388.0 in stage 0.0 (TID 394) in 11058 ms on jg1-w-72.c.maclab-ukbb.internal (executor 154) (342/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 589.0 in stage 0.0 (TID 796) in 2834 ms on jg1-w-65.c.maclab-ukbb.internal (executor 4) (343/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 737.0 in stage 0.0 (TID 1220, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 737, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 460.1 in stage 0.0 (TID 816) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 51] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 460.2 in stage 0.0 (TID 1221, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 385.0 in stage 0.0 (TID 391) in 11088 ms on jg1-w-88.c.maclab-ukbb.internal (executor 178) (344/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 738.0 in stage 0.0 (TID 1222, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 738, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 330.0 in stage 0.0 (TID 336) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 52] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 330.1 in stage 0.0 (TID 1223, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 330, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 478.1 in stage 0.0 (TID 799) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 53] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 478.2 in stage 0.0 (TID 1224, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 574.0 in stage 0.0 (TID 760) in 3214 ms on jg1-w-94.c.maclab-ukbb.internal (executor 99) (345/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 739.0 in stage 0.0 (TID 1225, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 739, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 154.7 in stage 0.0 (TID 946) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 54] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 154.8 in stage 0.0 (TID 1226, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 428.2 in stage 0.0 (TID 956) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 55] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 428.3 in stage 0.0 (TID 1227, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 194.3 in stage 0.0 (TID 993) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 56] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 194.4 in stage 0.0 (TID 1228, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 600.0 in stage 0.0 (TID 819) in 2676 ms on jg1-w-89.c.maclab-ukbb.internal (executor 116) (346/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 740.0 in stage 0.0 (TID 1229, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 740, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 166.2 in stage 0.0 (TID 884) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 57] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 166.3 in stage 0.0 (TID 1230, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 541.0 in stage 0.0 (TID 693) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 58] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 541.1 in stage 0.0 (TID 1231, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 541, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 741.0 in stage 0.0 (TID 1232, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 741, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 742.0 in stage 0.0 (TID 1233, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 0.7 in stage 0.0 (TID 870) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 59] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 191.2 in stage 0.0 (TID 866) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 60] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 191.3 in stage 0.0 (TID 1234, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 576.0 in stage 0.0 (TID 764) in 3250 ms on jg1-w-33.c.maclab-ukbb.internal (executor 140) (347/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 408.4 in stage 0.0 (TID 951) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 61] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 408.5 in stage 0.0 (TID 1235, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 0.8 in stage 0.0 (TID 1236, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 246.2 in stage 0.0 (TID 914) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 62] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 401.0 in stage 0.0 (TID 407) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 63] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 401.1 in stage 0.0 (TID 1237, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 389.0 in stage 0.0 (TID 395) in 11136 ms on jg1-w-72.c.maclab-ukbb.internal (executor 154) (348/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 246.3 in stage 0.0 (TID 1238, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 49.3 in stage 0.0 (TID 911) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 64] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 49.4 in stage 0.0 (TID 1239, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 743.0 in stage 0.0 (TID 1240, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 743, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 289.2 in stage 0.0 (TID 992) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 65] 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 561.0 in stage 0.0 (TID 735) in 3406 ms on jg1-w-99.c.maclab-ukbb.internal (executor 30) (349/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 289.3 in stage 0.0 (TID 1241, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 335.1 in stage 0.0 (TID 942) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 66] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 335.2 in stage 0.0 (TID 1242, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 744.0 in stage 0.0 (TID 1243, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 612.0 in stage 0.0 (TID 863) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 67] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 627.0 in stage 0.0 (TID 922) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 68] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 627.1 in stage 0.0 (TID 1244, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 570.0 in stage 0.0 (TID 751) in 3326 ms on jg1-w-90.c.maclab-ukbb.internal (executor 25) (350/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 612.1 in stage 0.0 (TID 1245, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 612, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 142.2 in stage 0.0 (TID 952) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 69] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 142.3 in stage 0.0 (TID 1246, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 423.3 in stage 0.0 (TID 878) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 70] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 423.4 in stage 0.0 (TID 1247, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 624.0 in stage 0.0 (TID 906) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 71] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 624.1 in stage 0.0 (TID 1248, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 624, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 606.0 in stage 0.0 (TID 829) in 2713 ms on jg1-w-48.c.maclab-ukbb.internal (executor 37) (351/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 745.0 in stage 0.0 (TID 1249, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 745, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 548.0 in stage 0.0 (TID 711) in 3681 ms on jg1-w-40.c.maclab-ukbb.internal (executor 41) (352/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 746.0 in stage 0.0 (TID 1250, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 162.1 in stage 0.0 (TID 792) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 72] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 162.2 in stage 0.0 (TID 1251, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 162, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 303.1 in stage 0.0 (TID 1028) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 73] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 303.2 in stage 0.0 (TID 1252, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 197.2 in stage 0.0 (TID 945) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 74] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 197.3 in stage 0.0 (TID 1253, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 199.3 in stage 0.0 (TID 1010) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 75] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 199.4 in stage 0.0 (TID 1254, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 625.0 in stage 0.0 (TID 908) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 76] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 625.1 in stage 0.0 (TID 1255, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 192.2 in stage 0.0 (TID 877) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 77] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 192.3 in stage 0.0 (TID 1256, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 319.0 in stage 0.0 (TID 325) in 11827 ms on jg1-w-24.c.maclab-ukbb.internal (executor 157) (353/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 747.0 in stage 0.0 (TID 1257, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 747, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 599.0 in stage 0.0 (TID 817) in 2891 ms on jg1-w-31.c.maclab-ukbb.internal (executor 183) (354/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 748.0 in stage 0.0 (TID 1258, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 748, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 273.1 in stage 0.0 (TID 839) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 78] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 273.2 in stage 0.0 (TID 1259, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 273, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 292.2 in stage 0.0 (TID 983) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 79] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 292.3 in stage 0.0 (TID 1260, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 749.0 in stage 0.0 (TID 1261, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 749, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 158.3 in stage 0.0 (TID 1014) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 80] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 62.2 in stage 0.0 (TID 720) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 81] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 62.3 in stage 0.0 (TID 1262, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 604.0 in stage 0.0 (TID 826) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 82] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 604.1 in stage 0.0 (TID 1263, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 604, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 622.0 in stage 0.0 (TID 896) in 2204 ms on jg1-w-22.c.maclab-ukbb.internal (executor 11) (355/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 158.4 in stage 0.0 (TID 1264, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Finished task 306.0 in stage 0.0 (TID 311) in 12504 ms on jg1-w-43.c.maclab-ukbb.internal (executor 129) (356/30000) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 750.0 in stage 0.0 (TID 1265, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 750, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 751.0 in stage 0.0 (TID 1266, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 751, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 152.0 in stage 0.0 (TID 157) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 83] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 449.3 in stage 0.0 (TID 1001) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 84] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 449.4 in stage 0.0 (TID 1267, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 310.2 in stage 0.0 (TID 954) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 85] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 310.3 in stage 0.0 (TID 1268, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 152.1 in stage 0.0 (TID 1269, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 516.0 in stage 0.0 (TID 645) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 86] 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 607.0 in stage 0.0 (TID 831) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 87] 2020-04-02 15:10:40 TaskSetManager: INFO: Starting task 607.1 in stage 0.0 (TID 1270, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 607, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:40 TaskSetManager: INFO: Lost task 582.0 in stage 0.0 (TID 773) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 88] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 582.1 in stage 0.0 (TID 1271, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 582, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 602.0 in stage 0.0 (TID 822) in 2976 ms on jg1-w-77.c.maclab-ukbb.internal (executor 147) (357/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 516.1 in stage 0.0 (TID 1272, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 544.1 in stage 0.0 (TID 905) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 89] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 544.2 in stage 0.0 (TID 1273, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 477.1 in stage 0.0 (TID 904) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 90] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 477.2 in stage 0.0 (TID 1274, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 477, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 608.0 in stage 0.0 (TID 836) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 91] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 608.1 in stage 0.0 (TID 1275, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 635.0 in stage 0.0 (TID 943) in 2038 ms on jg1-w-2.c.maclab-ukbb.internal (executor 79) (358/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 752.0 in stage 0.0 (TID 1276, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 752, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 296.0 in stage 0.0 (TID 301) in 12863 ms on jg1-w-61.c.maclab-ukbb.internal (executor 142) (359/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 753.0 in stage 0.0 (TID 1277, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 753, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 143.2 in stage 0.0 (TID 984) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 92] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 143.3 in stage 0.0 (TID 1278, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 130.1 in stage 0.0 (TID 871) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 93] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 130.2 in stage 0.0 (TID 1279, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 130, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 497.1 in stage 0.0 (TID 920) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 94] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 497.2 in stage 0.0 (TID 1280, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 359.1 in stage 0.0 (TID 926) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 95] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 359.2 in stage 0.0 (TID 1281, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 610.0 in stage 0.0 (TID 853) in 2685 ms on jg1-w-62.c.maclab-ukbb.internal (executor 60) (360/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 754.0 in stage 0.0 (TID 1282, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 754, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 333.2 in stage 0.0 (TID 1030) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 96] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 333.3 in stage 0.0 (TID 1283, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 491.1 in stage 0.0 (TID 895) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 97] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 491.2 in stage 0.0 (TID 1284, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 755.0 in stage 0.0 (TID 1285, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 755, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 495.1 in stage 0.0 (TID 930) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 98] 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 425.2 in stage 0.0 (TID 801) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 99] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 425.3 in stage 0.0 (TID 1286, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 492.1 in stage 0.0 (TID 881) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 100] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 492.2 in stage 0.0 (TID 1287, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 399.5 in stage 0.0 (TID 970) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 101] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 399.6 in stage 0.0 (TID 1288, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 526.1 in stage 0.0 (TID 949) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 102] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 526.2 in stage 0.0 (TID 1289, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 526, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 511.1 in stage 0.0 (TID 1044) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 103] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 511.2 in stage 0.0 (TID 1290, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 495.2 in stage 0.0 (TID 1291, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 486.1 in stage 0.0 (TID 898) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 104] 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 435.2 in stage 0.0 (TID 964) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 105] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 435.3 in stage 0.0 (TID 1292, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 565.0 in stage 0.0 (TID 741) in 3758 ms on jg1-w-94.c.maclab-ukbb.internal (executor 99) (361/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 486.2 in stage 0.0 (TID 1293, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 308.0 in stage 0.0 (TID 313) in 12700 ms on jg1-w-43.c.maclab-ukbb.internal (executor 150) (362/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 756.0 in stage 0.0 (TID 1294, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 75.3 in stage 0.0 (TID 1011) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 106] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 75.4 in stage 0.0 (TID 1295, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 518.1 in stage 0.0 (TID 967) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 107] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 518.2 in stage 0.0 (TID 1296, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 461.1 in stage 0.0 (TID 841) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 108] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 461.2 in stage 0.0 (TID 1297, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 461, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 405.2 in stage 0.0 (TID 678) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 109] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 405.3 in stage 0.0 (TID 1298, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 405, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 351.2 in stage 0.0 (TID 1069) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 110] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 351.3 in stage 0.0 (TID 1299, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 281.2 in stage 0.0 (TID 962) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 111] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 281.3 in stage 0.0 (TID 1300, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 91.3 in stage 0.0 (TID 1042) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 112] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 91.4 in stage 0.0 (TID 1301, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 277.2 in stage 0.0 (TID 997) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 113] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 277.3 in stage 0.0 (TID 1302, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 107.2 in stage 0.0 (TID 961) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 114] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 107.3 in stage 0.0 (TID 1303, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 358.1 in stage 0.0 (TID 921) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 115] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 358.2 in stage 0.0 (TID 1304, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 358, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 54.2 in stage 0.0 (TID 856) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 116] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 54.3 in stage 0.0 (TID 1305, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 54, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 757.0 in stage 0.0 (TID 1306, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 757, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 524.0 in stage 0.0 (TID 658) in 4580 ms on jg1-w-49.c.maclab-ukbb.internal (executor 43) (363/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 331.2 in stage 0.0 (TID 1031) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 117] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 331.3 in stage 0.0 (TID 1307, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 334.1 in stage 0.0 (TID 1055) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 118] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 334.2 in stage 0.0 (TID 1308, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 193.3 in stage 0.0 (TID 1066) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 119] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 193.4 in stage 0.0 (TID 1309, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 758.0 in stage 0.0 (TID 1310, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 758, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 759.0 in stage 0.0 (TID 1311, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 759, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 348.1 in stage 0.0 (TID 1020) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 120] 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 47.4 in stage 0.0 (TID 1007) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 121] 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 535.1 in stage 0.0 (TID 860) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 122] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 535.2 in stage 0.0 (TID 1312, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 439.2 in stage 0.0 (TID 968) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 123] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 439.3 in stage 0.0 (TID 1313, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 434.1 in stage 0.0 (TID 907) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 124] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 434.2 in stage 0.0 (TID 1314, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 434, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 355.2 in stage 0.0 (TID 1089) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 125] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 355.3 in stage 0.0 (TID 1315, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 81.4 in stage 0.0 (TID 1068) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 126] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 81.5 in stage 0.0 (TID 1316, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 618.0 in stage 0.0 (TID 879) in 2694 ms on jg1-w-79.c.maclab-ukbb.internal (executor 26) (364/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 47.5 in stage 0.0 (TID 1317, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 422.2 in stage 0.0 (TID 844) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 127] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 422.3 in stage 0.0 (TID 1318, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 248.2 in stage 0.0 (TID 1037) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 128] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 248.3 in stage 0.0 (TID 1319, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 638.0 in stage 0.0 (TID 948) in 2287 ms on jg1-w-22.c.maclab-ukbb.internal (executor 11) (365/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 348.2 in stage 0.0 (TID 1320, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 621.0 in stage 0.0 (TID 888) in 2680 ms on jg1-w-76.c.maclab-ukbb.internal (executor 92) (366/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 760.0 in stage 0.0 (TID 1321, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 760, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 611.0 in stage 0.0 (TID 861) in 2875 ms on jg1-w-78.c.maclab-ukbb.internal (executor 10) (367/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 761.0 in stage 0.0 (TID 1322, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 761, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 51.3 in stage 0.0 (TID 1046) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 129] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 51.4 in stage 0.0 (TID 1323, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 579.0 in stage 0.0 (TID 768) in 3827 ms on jg1-w-19.c.maclab-ukbb.internal (executor 133) (368/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 762.0 in stage 0.0 (TID 1324, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 392.1 in stage 0.0 (TID 936) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 130] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 392.2 in stage 0.0 (TID 1325, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 536.1 in stage 0.0 (TID 982) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 131] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 536.2 in stage 0.0 (TID 1326, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 763.0 in stage 0.0 (TID 1327, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 763, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 644.0 in stage 0.0 (TID 969) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 132] 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 598.1 in stage 0.0 (TID 1043) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 133] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 598.2 in stage 0.0 (TID 1328, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 317.0 in stage 0.0 (TID 323) in 12444 ms on jg1-w-46.c.maclab-ukbb.internal (executor 181) (369/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 644.1 in stage 0.0 (TID 1329, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 475.2 in stage 0.0 (TID 1026) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 134] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 475.3 in stage 0.0 (TID 1330, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 361.1 in stage 0.0 (TID 963) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 135] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 361.2 in stage 0.0 (TID 1331, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 361, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 20.4 in stage 0.0 (TID 1025) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 136] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 20.5 in stage 0.0 (TID 1332, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 764.0 in stage 0.0 (TID 1333, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 764, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 186.2 in stage 0.0 (TID 925) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 137] 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 297.0 in stage 0.0 (TID 302) in 13173 ms on jg1-w-54.c.maclab-ukbb.internal (executor 134) (370/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 186.3 in stage 0.0 (TID 1334, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 274.2 in stage 0.0 (TID 987) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 138] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 274.3 in stage 0.0 (TID 1335, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 680.0 in stage 0.0 (TID 1065) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 139] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 680.1 in stage 0.0 (TID 1336, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 442.2 in stage 0.0 (TID 994) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 140] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 442.3 in stage 0.0 (TID 1337, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 167.3 in stage 0.0 (TID 1045) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 141] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 167.4 in stage 0.0 (TID 1338, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 155.2 in stage 0.0 (TID 845) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 142] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 155.3 in stage 0.0 (TID 1339, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 155, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 109.2 in stage 0.0 (TID 894) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 143] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 109.3 in stage 0.0 (TID 1340, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 350.1 in stage 0.0 (TID 882) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 144] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 350.2 in stage 0.0 (TID 1341, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 350, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 649.0 in stage 0.0 (TID 978) in 2203 ms on jg1-w-39.c.maclab-ukbb.internal (executor 137) (371/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 765.0 in stage 0.0 (TID 1342, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 765, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 164.2 in stage 0.0 (TID 917) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 145] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 164.3 in stage 0.0 (TID 1343, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 642.0 in stage 0.0 (TID 959) in 2322 ms on jg1-w-23.c.maclab-ukbb.internal (executor 29) (372/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 766.0 in stage 0.0 (TID 1344, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 766, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 58.4 in stage 0.0 (TID 1049) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 146] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 58.5 in stage 0.0 (TID 1345, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 360.1 in stage 0.0 (TID 1017) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 147] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 360.2 in stage 0.0 (TID 1346, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 57.3 in stage 0.0 (TID 975) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 148] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 57.4 in stage 0.0 (TID 1347, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 398.0 in stage 0.0 (TID 404) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 149] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 398.1 in stage 0.0 (TID 1348, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 398, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 366.1 in stage 0.0 (TID 1023) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 150] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 366.2 in stage 0.0 (TID 1349, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 617.0 in stage 0.0 (TID 874) in 2897 ms on jg1-w-89.c.maclab-ukbb.internal (executor 71) (373/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 767.0 in stage 0.0 (TID 1350, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 767, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 170.3 in stage 0.0 (TID 1071) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 151] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 170.4 in stage 0.0 (TID 1351, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 613.0 in stage 0.0 (TID 867) in 2938 ms on jg1-w-99.c.maclab-ukbb.internal (executor 49) (374/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 768.0 in stage 0.0 (TID 1352, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 768, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 769.0 in stage 0.0 (TID 1353, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 500.1 in stage 0.0 (TID 924) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 152] 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 619.0 in stage 0.0 (TID 880) in 2873 ms on jg1-w-11.c.maclab-ukbb.internal (executor 73) (375/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 500.2 in stage 0.0 (TID 1354, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 157.4 in stage 0.0 (TID 1132) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 153] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 157.5 in stage 0.0 (TID 1355, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 242.2 in stage 0.0 (TID 1057) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 154] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 242.3 in stage 0.0 (TID 1356, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 628.0 in stage 0.0 (TID 928) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 155] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 628.1 in stage 0.0 (TID 1357, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 347.1 in stage 0.0 (TID 1102) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 156] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 347.2 in stage 0.0 (TID 1358, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 56.3 in stage 0.0 (TID 1013) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 157] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 56.4 in stage 0.0 (TID 1359, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 636.0 in stage 0.0 (TID 944) in 2546 ms on jg1-w-15.c.maclab-ukbb.internal (executor 83) (376/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 770.0 in stage 0.0 (TID 1360, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 770, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 632.0 in stage 0.0 (TID 935) in 2585 ms on jg1-w-17.c.maclab-ukbb.internal (executor 166) (377/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 771.0 in stage 0.0 (TID 1361, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 771, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 188.3 in stage 0.0 (TID 1035) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 158] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 188.4 in stage 0.0 (TID 1362, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 52.5 in stage 0.0 (TID 1105) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 159] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 52.6 in stage 0.0 (TID 1363, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 634.0 in stage 0.0 (TID 938) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 160] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 634.1 in stage 0.0 (TID 1364, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 634, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 616.0 in stage 0.0 (TID 873) in 2992 ms on jg1-w-70.c.maclab-ukbb.internal (executor 135) (378/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 772.0 in stage 0.0 (TID 1365, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 772, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 488.1 in stage 0.0 (TID 916) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 161] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 488.2 in stage 0.0 (TID 1366, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 153.2 in stage 0.0 (TID 1012) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 162] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 153.3 in stage 0.0 (TID 1367, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 195.3 in stage 0.0 (TID 1002) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 163] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 195.4 in stage 0.0 (TID 1368, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 205.3 in stage 0.0 (TID 1118) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 164] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 205.4 in stage 0.0 (TID 1369, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 641.0 in stage 0.0 (TID 957) in 2494 ms on jg1-w-35.c.maclab-ukbb.internal (executor 36) (379/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 773.0 in stage 0.0 (TID 1370, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 773, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 662.0 in stage 0.0 (TID 1006) in 2210 ms on jg1-w-81.c.maclab-ukbb.internal (executor 111) (380/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 774.0 in stage 0.0 (TID 1371, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 774, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 111.2 in stage 0.0 (TID 958) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 165] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 111.3 in stage 0.0 (TID 1372, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 80.2 in stage 0.0 (TID 838) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 166] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 80.3 in stage 0.0 (TID 1373, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 80, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 593.1 in stage 0.0 (TID 1086) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 167] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 593.2 in stage 0.0 (TID 1374, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 27.4 in stage 0.0 (TID 966) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 168] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 27.5 in stage 0.0 (TID 1375, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 506.1 in stage 0.0 (TID 976) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 169] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 506.2 in stage 0.0 (TID 1376, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 653.0 in stage 0.0 (TID 986) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 170] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 653.1 in stage 0.0 (TID 1377, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 653, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 493.1 in stage 0.0 (TID 1029) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 171] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 493.2 in stage 0.0 (TID 1378, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 775.0 in stage 0.0 (TID 1379, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 775, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 651.0 in stage 0.0 (TID 981) in 2418 ms on jg1-w-50.c.maclab-ukbb.internal (executor 14) (381/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 609.1 in stage 0.0 (TID 1104) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 172] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 609.2 in stage 0.0 (TID 1380, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 655.0 in stage 0.0 (TID 990) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 173] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 655.1 in stage 0.0 (TID 1381, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 655, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 276.2 in stage 0.0 (TID 1051) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 174] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 276.3 in stage 0.0 (TID 1382, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 418.3 in stage 0.0 (TID 1079) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 175] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 418.4 in stage 0.0 (TID 1383, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 776.0 in stage 0.0 (TID 1384, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 776, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 225.3 in stage 0.0 (TID 1087) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 176] 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 660.0 in stage 0.0 (TID 1000) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 177] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 660.1 in stage 0.0 (TID 1385, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 660, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 554.1 in stage 0.0 (TID 1053) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 178] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 554.2 in stage 0.0 (TID 1386, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 629.0 in stage 0.0 (TID 929) in 2765 ms on jg1-w-8.c.maclab-ukbb.internal (executor 155) (382/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 225.4 in stage 0.0 (TID 1387, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 106.3 in stage 0.0 (TID 1038) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 179] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 106.4 in stage 0.0 (TID 1388, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 658.0 in stage 0.0 (TID 996) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 180] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 658.1 in stage 0.0 (TID 1389, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 658, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 647.0 in stage 0.0 (TID 974) in 2572 ms on jg1-w-11.c.maclab-ukbb.internal (executor 117) (383/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 777.0 in stage 0.0 (TID 1390, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 206.3 in stage 0.0 (TID 1156) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 181] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 206.4 in stage 0.0 (TID 1391, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 580.0 in stage 0.0 (TID 769) in 4234 ms on jg1-w-84.c.maclab-ukbb.internal (executor 75) (384/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 778.0 in stage 0.0 (TID 1392, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 778, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 220.3 in stage 0.0 (TID 1120) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 182] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 220.4 in stage 0.0 (TID 1393, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 487.2 in stage 0.0 (TID 1150) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 183] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 487.3 in stage 0.0 (TID 1394, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 592.0 in stage 0.0 (TID 803) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 184] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 592.1 in stage 0.0 (TID 1395, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 63.4 in stage 0.0 (TID 1067) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 185] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 63.5 in stage 0.0 (TID 1396, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 124.2 in stage 0.0 (TID 1052) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 186] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 124.3 in stage 0.0 (TID 1397, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 454.1 in stage 0.0 (TID 806) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 187] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 454.2 in stage 0.0 (TID 1398, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 454, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 173.2 in stage 0.0 (TID 960) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 188] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 173.3 in stage 0.0 (TID 1399, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 646.0 in stage 0.0 (TID 973) in 2651 ms on jg1-w-88.c.maclab-ukbb.internal (executor 178) (385/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 779.0 in stage 0.0 (TID 1400, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 779, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 202.3 in stage 0.0 (TID 1133) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 189] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 202.4 in stage 0.0 (TID 1401, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 151.3 in stage 0.0 (TID 1138) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 190] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 151.4 in stage 0.0 (TID 1402, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 615.0 in stage 0.0 (TID 872) in 3274 ms on jg1-w-92.c.maclab-ukbb.internal (executor 196) (386/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 780.0 in stage 0.0 (TID 1403, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 667.0 in stage 0.0 (TID 1024) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 191] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 667.1 in stage 0.0 (TID 1404, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 667, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 694.0 in stage 0.0 (TID 1100) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 192] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 694.1 in stage 0.0 (TID 1405, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 288.2 in stage 0.0 (TID 939) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 193] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 288.3 in stage 0.0 (TID 1406, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 218.2 in stage 0.0 (TID 890) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 194] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 218.3 in stage 0.0 (TID 1407, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 781.0 in stage 0.0 (TID 1408, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 31.4 in stage 0.0 (TID 971) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 195] 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 713.0 in stage 0.0 (TID 1143) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 196] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 713.1 in stage 0.0 (TID 1409, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 505.2 in stage 0.0 (TID 1147) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 197] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 505.3 in stage 0.0 (TID 1410, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 631.0 in stage 0.0 (TID 934) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 198] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 631.1 in stage 0.0 (TID 1411, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 631, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Finished task 482.0 in stage 0.0 (TID 566) in 6139 ms on jg1-w-4.c.maclab-ukbb.internal (executor 146) (387/30000) 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 31.5 in stage 0.0 (TID 1412, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 519.1 in stage 0.0 (TID 1082) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 199] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 519.2 in stage 0.0 (TID 1413, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 719.0 in stage 0.0 (TID 1160) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 200] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 719.1 in stage 0.0 (TID 1414, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 390.1 in stage 0.0 (TID 1003) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 201] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 390.2 in stage 0.0 (TID 1415, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 125.2 in stage 0.0 (TID 940) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 202] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 125.3 in stage 0.0 (TID 1416, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 1.7 in stage 0.0 (TID 1097) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 203] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 1.8 in stage 0.0 (TID 1417, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 424.2 in stage 0.0 (TID 1083) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 204] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 424.3 in stage 0.0 (TID 1418, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 424, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 257.3 in stage 0.0 (TID 1191) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 205] 2020-04-02 15:10:41 TaskSetManager: INFO: Starting task 257.4 in stage 0.0 (TID 1419, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:41 TaskSetManager: INFO: Lost task 201.3 in stage 0.0 (TID 1183) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 206] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 201.4 in stage 0.0 (TID 1420, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 187.3 in stage 0.0 (TID 1129) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 207] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 187.4 in stage 0.0 (TID 1421, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 444.3 in stage 0.0 (TID 1181) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 208] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 444.4 in stage 0.0 (TID 1422, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 639.0 in stage 0.0 (TID 953) in 2965 ms on jg1-w-73.c.maclab-ukbb.internal (executor 130) (388/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 782.0 in stage 0.0 (TID 1423, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 782, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 504.2 in stage 0.0 (TID 1039) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 209] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 504.3 in stage 0.0 (TID 1424, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 227.2 in stage 0.0 (TID 1070) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 210] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 227.3 in stage 0.0 (TID 1425, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 227, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 673.0 in stage 0.0 (TID 1041) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 211] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 673.1 in stage 0.0 (TID 1426, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 372.1 in stage 0.0 (TID 1074) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 212] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 372.2 in stage 0.0 (TID 1427, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 517.2 in stage 0.0 (TID 1155) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 213] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 517.3 in stage 0.0 (TID 1428, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 520.1 in stage 0.0 (TID 979) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 214] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 520.2 in stage 0.0 (TID 1429, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 677.0 in stage 0.0 (TID 1059) in 2375 ms on jg1-w-87.c.maclab-ukbb.internal (executor 53) (389/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 783.0 in stage 0.0 (TID 1430, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 783, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 275.3 in stage 0.0 (TID 1141) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 215] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 275.4 in stage 0.0 (TID 1431, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 496.2 in stage 0.0 (TID 1137) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 216] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 496.3 in stage 0.0 (TID 1432, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 462.2 in stage 0.0 (TID 1184) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 217] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 462.3 in stage 0.0 (TID 1433, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 462, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 443.3 in stage 0.0 (TID 1188) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 218] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 443.4 in stage 0.0 (TID 1434, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 346.1 in stage 0.0 (TID 1099) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 219] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 346.2 in stage 0.0 (TID 1435, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 670.0 in stage 0.0 (TID 1033) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 220] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 670.1 in stage 0.0 (TID 1436, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 670, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 597.1 in stage 0.0 (TID 1092) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 221] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 597.2 in stage 0.0 (TID 1437, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 654.0 in stage 0.0 (TID 989) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 222] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 654.1 in stage 0.0 (TID 1438, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 654, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 784.0 in stage 0.0 (TID 1439, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 784, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 675.0 in stage 0.0 (TID 1050) in 2472 ms on jg1-w-28.c.maclab-ukbb.internal (executor 39) (390/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 785.0 in stage 0.0 (TID 1440, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 785, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 633.0 in stage 0.0 (TID 937) in 3165 ms on jg1-w-31.c.maclab-ukbb.internal (executor 158) (391/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 656.0 in stage 0.0 (TID 991) in 2845 ms on jg1-w-60.c.maclab-ukbb.internal (executor 20) (392/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 786.0 in stage 0.0 (TID 1441, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 786, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 327.1 in stage 0.0 (TID 1018) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 223] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 327.2 in stage 0.0 (TID 1442, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 121.3 in stage 0.0 (TID 1182) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 224] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 121.4 in stage 0.0 (TID 1443, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 53.5 in stage 0.0 (TID 1203) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 225] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 53.6 in stage 0.0 (TID 1444, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 354.2 in stage 0.0 (TID 1214) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 226] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 354.3 in stage 0.0 (TID 1445, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 169.3 in stage 0.0 (TID 1119) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 227] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 169.4 in stage 0.0 (TID 1446, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 474.2 in stage 0.0 (TID 1190) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 228] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 474.3 in stage 0.0 (TID 1447, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 224.2 in stage 0.0 (TID 1004) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 229] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 224.3 in stage 0.0 (TID 1448, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 672.0 in stage 0.0 (TID 1040) in 2577 ms on jg1-w-98.c.maclab-ukbb.internal (executor 62) (393/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 787.0 in stage 0.0 (TID 1449, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 787, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 39.4 in stage 0.0 (TID 1161) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 230] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 39.5 in stage 0.0 (TID 1450, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 679.0 in stage 0.0 (TID 1064) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 231] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 679.1 in stage 0.0 (TID 1451, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 679, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 709.0 in stage 0.0 (TID 1135) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 232] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 709.1 in stage 0.0 (TID 1452, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 41.3 in stage 0.0 (TID 1163) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 233] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 41.4 in stage 0.0 (TID 1453, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 212.3 in stage 0.0 (TID 1170) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 234] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 212.4 in stage 0.0 (TID 1454, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 64.3 in stage 0.0 (TID 1063) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 235] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 64.4 in stage 0.0 (TID 1455, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 699.0 in stage 0.0 (TID 1114) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 236] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 699.1 in stage 0.0 (TID 1456, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 645.0 in stage 0.0 (TID 972) in 3050 ms on jg1-w-59.c.maclab-ukbb.internal (executor 164) (394/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 788.0 in stage 0.0 (TID 1457, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 788, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 789.0 in stage 0.0 (TID 1458, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 577.0 in stage 0.0 (TID 765) in 4730 ms on jg1-w-33.c.maclab-ukbb.internal (executor 140) (395/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 678.0 in stage 0.0 (TID 1060) in 2519 ms on jg1-w-53.c.maclab-ukbb.internal (executor 114) (396/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 790.0 in stage 0.0 (TID 1459, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 790, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 198.3 in stage 0.0 (TID 1162) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 237] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 198.4 in stage 0.0 (TID 1460, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 502.2 in stage 0.0 (TID 1157) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 238] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 502.3 in stage 0.0 (TID 1461, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 177.3 in stage 0.0 (TID 1179) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 239] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 177.4 in stage 0.0 (TID 1462, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 791.0 in stage 0.0 (TID 1463, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 791, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 728.0 in stage 0.0 (TID 1178) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 240] 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 698.0 in stage 0.0 (TID 1110) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 241] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 698.1 in stage 0.0 (TID 1464, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 698, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 711.0 in stage 0.0 (TID 1140) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 242] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 711.1 in stage 0.0 (TID 1465, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 711, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 515.1 in stage 0.0 (TID 923) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 243] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 515.2 in stage 0.0 (TID 1466, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 515, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 543.1 in stage 0.0 (TID 1124) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 244] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 543.2 in stage 0.0 (TID 1467, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 290.1 in stage 0.0 (TID 941) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 245] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 290.2 in stage 0.0 (TID 1468, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 290, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 661.0 in stage 0.0 (TID 1005) in 2889 ms on jg1-w-46.c.maclab-ukbb.internal (executor 181) (397/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 728.1 in stage 0.0 (TID 1469, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 626.0 in stage 0.0 (TID 918) in 3425 ms on jg1-w-63.c.maclab-ukbb.internal (executor 52) (398/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 792.0 in stage 0.0 (TID 1470, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 792, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 508.1 in stage 0.0 (TID 988) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 246] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 508.2 in stage 0.0 (TID 1471, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 508, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 476.2 in stage 0.0 (TID 1036) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 247] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 476.3 in stage 0.0 (TID 1472, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 588.1 in stage 0.0 (TID 1084) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 248] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 588.2 in stage 0.0 (TID 1473, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 588, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 299.1 in stage 0.0 (TID 1117) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 249] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 299.2 in stage 0.0 (TID 1474, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 299, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 716.0 in stage 0.0 (TID 1148) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 250] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 716.1 in stage 0.0 (TID 1475, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 716, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 402.0 in stage 0.0 (TID 408) in 12371 ms on jg1-w-66.c.maclab-ukbb.internal (executor 159) (399/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 793.0 in stage 0.0 (TID 1476, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 793, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 400.1 in stage 0.0 (TID 1209) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 251] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 400.2 in stage 0.0 (TID 1477, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 368.1 in stage 0.0 (TID 1154) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 252] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 368.2 in stage 0.0 (TID 1478, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 368, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 513.2 in stage 0.0 (TID 1103) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 253] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 513.3 in stage 0.0 (TID 1479, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 113.3 in stage 0.0 (TID 1111) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 254] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 113.4 in stage 0.0 (TID 1480, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 141.2 in stage 0.0 (TID 998) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 255] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 141.3 in stage 0.0 (TID 1481, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 141, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 403.0 in stage 0.0 (TID 409) in 12396 ms on jg1-w-66.c.maclab-ukbb.internal (executor 159) (400/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 794.0 in stage 0.0 (TID 1482, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 794, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 640.0 in stage 0.0 (TID 955) in 3263 ms on jg1-w-45.c.maclab-ukbb.internal (executor 68) (401/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 795.0 in stage 0.0 (TID 1483, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 795, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 796.0 in stage 0.0 (TID 1484, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 796, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 303.2 in stage 0.0 (TID 1252) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 256] 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 427.3 in stage 0.0 (TID 1088) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 257] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 427.4 in stage 0.0 (TID 1485, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 671.0 in stage 0.0 (TID 1034) in 2788 ms on jg1-w-33.c.maclab-ukbb.internal (executor 107) (402/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 303.3 in stage 0.0 (TID 1486, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 687.0 in stage 0.0 (TID 1081) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 258] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 687.1 in stage 0.0 (TID 1487, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 687, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 676.0 in stage 0.0 (TID 1056) in 2664 ms on jg1-w-44.c.maclab-ukbb.internal (executor 105) (403/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 797.0 in stage 0.0 (TID 1488, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 797, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 459.2 in stage 0.0 (TID 1193) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 259] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 459.3 in stage 0.0 (TID 1489, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 595.0 in stage 0.0 (TID 807) in 4456 ms on jg1-w-93.c.maclab-ukbb.internal (executor 113) (404/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 798.0 in stage 0.0 (TID 1490, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 798, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 707.0 in stage 0.0 (TID 1128) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 260] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 707.1 in stage 0.0 (TID 1491, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 309.2 in stage 0.0 (TID 1125) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 261] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 309.3 in stage 0.0 (TID 1492, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 309, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 637.0 in stage 0.0 (TID 947) in 3369 ms on jg1-w-68.c.maclab-ukbb.internal (executor 95) (405/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 799.0 in stage 0.0 (TID 1493, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 799, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 160.2 in stage 0.0 (TID 1016) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 262] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 160.3 in stage 0.0 (TID 1494, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 690.0 in stage 0.0 (TID 1093) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 263] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 690.1 in stage 0.0 (TID 1495, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 697.0 in stage 0.0 (TID 1109) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 264] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 697.1 in stage 0.0 (TID 1496, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 697, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 650.0 in stage 0.0 (TID 980) in 3162 ms on jg1-w-17.c.maclab-ukbb.internal (executor 191) (406/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 800.0 in stage 0.0 (TID 1497, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 800, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 426.4 in stage 0.0 (TID 1192) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 265] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 426.5 in stage 0.0 (TID 1498, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 414.3 in stage 0.0 (TID 1096) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 266] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 414.4 in stage 0.0 (TID 1499, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 199.4 in stage 0.0 (TID 1254) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 267] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 199.5 in stage 0.0 (TID 1500, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 718.0 in stage 0.0 (TID 1152) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 268] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 718.1 in stage 0.0 (TID 1501, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 408.5 in stage 0.0 (TID 1235) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 269] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 408.6 in stage 0.0 (TID 1502, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 154.8 in stage 0.0 (TID 1226) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 270] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 154.9 in stage 0.0 (TID 1503, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 563.0 in stage 0.0 (TID 738) in 5087 ms on jg1-w-29.c.maclab-ukbb.internal (executor 58) (407/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 801.0 in stage 0.0 (TID 1504, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 801, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 407.4 in stage 0.0 (TID 1047) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 271] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 407.5 in stage 0.0 (TID 1505, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 489.1 in stage 0.0 (TID 915) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 272] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 489.2 in stage 0.0 (TID 1506, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 685.0 in stage 0.0 (TID 1078) in 2641 ms on jg1-w-25.c.maclab-ukbb.internal (executor 23) (408/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 802.0 in stage 0.0 (TID 1507, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 802, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 142.3 in stage 0.0 (TID 1246) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 273] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 142.4 in stage 0.0 (TID 1508, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 682.0 in stage 0.0 (TID 1075) in 2648 ms on jg1-w-98.c.maclab-ukbb.internal (executor 94) (409/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 803.0 in stage 0.0 (TID 1509, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 803, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 696.0 in stage 0.0 (TID 1108) in 2464 ms on jg1-w-48.c.maclab-ukbb.internal (executor 67) (410/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 804.0 in stage 0.0 (TID 1510, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 804, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 156.4 in stage 0.0 (TID 1131) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 274] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 156.5 in stage 0.0 (TID 1511, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 659.0 in stage 0.0 (TID 999) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 275] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 659.1 in stage 0.0 (TID 1512, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 659, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 805.0 in stage 0.0 (TID 1513, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 805, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 620.0 in stage 0.0 (TID 885) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 276] 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 591.0 in stage 0.0 (TID 802) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 277] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 591.1 in stage 0.0 (TID 1514, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 591, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 620.1 in stage 0.0 (TID 1515, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 620, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 165.3 in stage 0.0 (TID 1201) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 278] 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 478.2 in stage 0.0 (TID 1224) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 279] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 478.3 in stage 0.0 (TID 1516, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 175.3 in stage 0.0 (TID 1195) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 280] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 175.4 in stage 0.0 (TID 1517, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 652.0 in stage 0.0 (TID 985) in 3255 ms on jg1-w-10.c.maclab-ukbb.internal (executor 160) (411/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 165.4 in stage 0.0 (TID 1518, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 746.0 in stage 0.0 (TID 1250) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 281] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 746.1 in stage 0.0 (TID 1519, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 594.1 in stage 0.0 (TID 1171) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 282] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 594.2 in stage 0.0 (TID 1520, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 666.0 in stage 0.0 (TID 1022) in 3056 ms on jg1-w-58.c.maclab-ukbb.internal (executor 170) (412/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 806.0 in stage 0.0 (TID 1521, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 806, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 335.2 in stage 0.0 (TID 1242) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 283] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 335.3 in stage 0.0 (TID 1522, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 544.2 in stage 0.0 (TID 1273) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 284] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 544.3 in stage 0.0 (TID 1523, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 702.0 in stage 0.0 (TID 1121) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 285] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 702.1 in stage 0.0 (TID 1524, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 702, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 507.1 in stage 0.0 (TID 1062) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 286] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 507.2 in stage 0.0 (TID 1525, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 423.4 in stage 0.0 (TID 1247) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 287] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 423.5 in stage 0.0 (TID 1526, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 441.3 in stage 0.0 (TID 1216) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 288] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 441.4 in stage 0.0 (TID 1527, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 140.3 in stage 0.0 (TID 1217) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 289] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 140.4 in stage 0.0 (TID 1528, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 663.0 in stage 0.0 (TID 1015) in 3146 ms on jg1-w-91.c.maclab-ukbb.internal (executor 59) (413/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 807.0 in stage 0.0 (TID 1529, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 807, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 280.2 in stage 0.0 (TID 1207) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 290] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 280.3 in stage 0.0 (TID 1530, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 808.0 in stage 0.0 (TID 1531, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 808, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 730.0 in stage 0.0 (TID 1199) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 291] 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 704.0 in stage 0.0 (TID 1123) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 292] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 704.1 in stage 0.0 (TID 1532, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 704, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 643.0 in stage 0.0 (TID 965) in 3477 ms on jg1-w-80.c.maclab-ukbb.internal (executor 18) (414/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 730.1 in stage 0.0 (TID 1533, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 730, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 143.3 in stage 0.0 (TID 1278) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 293] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 143.4 in stage 0.0 (TID 1534, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 727.0 in stage 0.0 (TID 1177) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 294] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 727.1 in stage 0.0 (TID 1535, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 608.1 in stage 0.0 (TID 1275) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 295] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 608.2 in stage 0.0 (TID 1536, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 415.4 in stage 0.0 (TID 1130) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 296] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 415.5 in stage 0.0 (TID 1537, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 49.4 in stage 0.0 (TID 1239) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 297] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 49.5 in stage 0.0 (TID 1538, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 601.1 in stage 0.0 (TID 1158) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 298] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 601.2 in stage 0.0 (TID 1539, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 194.4 in stage 0.0 (TID 1228) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 299] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 194.5 in stage 0.0 (TID 1540, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 700.0 in stage 0.0 (TID 1115) in 2592 ms on jg1-w-91.c.maclab-ukbb.internal (executor 91) (415/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 809.0 in stage 0.0 (TID 1541, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 809, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 810.0 in stage 0.0 (TID 1542, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 810, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 375.0 in stage 0.0 (TID 381) in 13205 ms on jg1-w-47.c.maclab-ukbb.internal (executor 169) (416/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 75.4 in stage 0.0 (TID 1295) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 300] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 75.5 in stage 0.0 (TID 1543, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 692.0 in stage 0.0 (TID 1095) in 2784 ms on jg1-w-85.c.maclab-ukbb.internal (executor 63) (417/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 811.0 in stage 0.0 (TID 1544, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 811, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 648.0 in stage 0.0 (TID 977) in 3492 ms on jg1-w-59.c.maclab-ukbb.internal (executor 164) (418/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 812.0 in stage 0.0 (TID 1545, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 812, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 333.3 in stage 0.0 (TID 1283) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 301] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 333.4 in stage 0.0 (TID 1546, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 604.1 in stage 0.0 (TID 1263) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 302] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 604.2 in stage 0.0 (TID 1547, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 604, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 217.3 in stage 0.0 (TID 1187) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 303] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 217.4 in stage 0.0 (TID 1548, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 449.4 in stage 0.0 (TID 1267) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 304] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 449.5 in stage 0.0 (TID 1549, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 539.1 in stage 0.0 (TID 1164) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 305] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 539.2 in stage 0.0 (TID 1550, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 539, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 310.3 in stage 0.0 (TID 1268) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 306] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 310.4 in stage 0.0 (TID 1551, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 152.1 in stage 0.0 (TID 1269) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 307] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 152.2 in stage 0.0 (TID 1552, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 185.3 in stage 0.0 (TID 1211) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 308] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 185.4 in stage 0.0 (TID 1553, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 813.0 in stage 0.0 (TID 1554, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 813, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 715.0 in stage 0.0 (TID 1146) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 309] 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 712.0 in stage 0.0 (TID 1142) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 310] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 712.1 in stage 0.0 (TID 1555, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 712, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 331.3 in stage 0.0 (TID 1307) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 311] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 331.4 in stage 0.0 (TID 1556, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 511.2 in stage 0.0 (TID 1290) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 312] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 511.3 in stage 0.0 (TID 1557, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 50.3 in stage 0.0 (TID 1008) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 313] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 50.4 in stage 0.0 (TID 1558, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 715.1 in stage 0.0 (TID 1559, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 715, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 742.0 in stage 0.0 (TID 1233) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 314] 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 438.2 in stage 0.0 (TID 1180) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 315] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 438.3 in stage 0.0 (TID 1560, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 438, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 282.3 in stage 0.0 (TID 1218) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 316] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 282.4 in stage 0.0 (TID 1561, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 91.4 in stage 0.0 (TID 1301) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 317] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 91.5 in stage 0.0 (TID 1562, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 567.1 in stage 0.0 (TID 1153) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 318] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 567.2 in stage 0.0 (TID 1563, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 567, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 706.0 in stage 0.0 (TID 1127) in 2660 ms on jg1-w-60.c.maclab-ukbb.internal (executor 20) (419/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 742.1 in stage 0.0 (TID 1564, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 246.3 in stage 0.0 (TID 1238) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 319] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 246.4 in stage 0.0 (TID 1565, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 3.6 in stage 0.0 (TID 1185) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 320] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 3.7 in stage 0.0 (TID 1566, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 584.1 in stage 0.0 (TID 1107) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 321] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 584.2 in stage 0.0 (TID 1567, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 399.6 in stage 0.0 (TID 1288) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 322] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 399.7 in stage 0.0 (TID 1568, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 270.2 in stage 0.0 (TID 1145) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 323] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 270.3 in stage 0.0 (TID 1569, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 270, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 721.0 in stage 0.0 (TID 1167) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 324] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 721.1 in stage 0.0 (TID 1570, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 814.0 in stage 0.0 (TID 1571, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 814, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 406.4 in stage 0.0 (TID 1061) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 325] 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 191.3 in stage 0.0 (TID 1234) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 326] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 191.4 in stage 0.0 (TID 1572, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 744.0 in stage 0.0 (TID 1243) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 327] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 744.1 in stage 0.0 (TID 1573, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 433.2 in stage 0.0 (TID 1169) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 328] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 433.3 in stage 0.0 (TID 1574, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 433, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 583.1 in stage 0.0 (TID 1101) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 329] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 583.2 in stage 0.0 (TID 1575, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 583, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 736.0 in stage 0.0 (TID 1219) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 330] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 736.1 in stage 0.0 (TID 1576, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 128.2 in stage 0.0 (TID 1054) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 331] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 128.3 in stage 0.0 (TID 1577, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 710.0 in stage 0.0 (TID 1136) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 332] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 710.1 in stage 0.0 (TID 1578, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 281.3 in stage 0.0 (TID 1300) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 333] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 281.4 in stage 0.0 (TID 1579, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 355.3 in stage 0.0 (TID 1315) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 334] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 355.4 in stage 0.0 (TID 1580, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 688.0 in stage 0.0 (TID 1090) in 3004 ms on jg1-w-53.c.maclab-ukbb.internal (executor 114) (420/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 406.5 in stage 0.0 (TID 1581, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 708.0 in stage 0.0 (TID 1134) in 2737 ms on jg1-w-17.c.maclab-ukbb.internal (executor 191) (421/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 815.0 in stage 0.0 (TID 1582, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 815, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 681.0 in stage 0.0 (TID 1073) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 335] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 681.1 in stage 0.0 (TID 1583, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 681, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 686.0 in stage 0.0 (TID 1080) in 3073 ms on jg1-w-67.c.maclab-ukbb.internal (executor 141) (422/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 816.0 in stage 0.0 (TID 1584, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 816, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 292.3 in stage 0.0 (TID 1260) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 336] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 292.4 in stage 0.0 (TID 1585, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 428.3 in stage 0.0 (TID 1227) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 337] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 428.4 in stage 0.0 (TID 1586, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 409.4 in stage 0.0 (TID 1200) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 338] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 409.5 in stage 0.0 (TID 1587, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 689.0 in stage 0.0 (TID 1091) in 3039 ms on jg1-w-53.c.maclab-ukbb.internal (executor 35) (423/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 817.0 in stage 0.0 (TID 1588, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 817, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 460.2 in stage 0.0 (TID 1221) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 339] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 460.3 in stage 0.0 (TID 1589, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 625.1 in stage 0.0 (TID 1255) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 340] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 625.2 in stage 0.0 (TID 1590, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 247.3 in stage 0.0 (TID 1173) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 341] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 247.4 in stage 0.0 (TID 1591, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 516.1 in stage 0.0 (TID 1272) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 342] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 516.2 in stage 0.0 (TID 1592, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 818.0 in stage 0.0 (TID 1593, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 818, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 359.2 in stage 0.0 (TID 1281) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 343] 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 241.2 in stage 0.0 (TID 1149) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 344] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 241.3 in stage 0.0 (TID 1594, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 241, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 731.0 in stage 0.0 (TID 1205) in 2411 ms on jg1-w-9.c.maclab-ukbb.internal (executor 121) (424/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 359.3 in stage 0.0 (TID 1595, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 209.3 in stage 0.0 (TID 1202) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 345] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 209.4 in stage 0.0 (TID 1596, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 166.3 in stage 0.0 (TID 1230) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 346] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 166.4 in stage 0.0 (TID 1597, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 691.0 in stage 0.0 (TID 1094) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 347] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 691.1 in stage 0.0 (TID 1598, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 691, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 542.1 in stage 0.0 (TID 1189) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 348] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 542.2 in stage 0.0 (TID 1599, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 542, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 345.2 in stage 0.0 (TID 1197) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 349] 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 345.3 in stage 0.0 (TID 1600, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Finished task 740.0 in stage 0.0 (TID 1229) in 2288 ms on jg1-w-21.c.maclab-ukbb.internal (executor 47) (425/30000) 2020-04-02 15:10:42 TaskSetManager: INFO: Starting task 819.0 in stage 0.0 (TID 1601, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 819, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:42 TaskSetManager: INFO: Lost task 627.1 in stage 0.0 (TID 1244) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 350] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 627.2 in stage 0.0 (TID 1602, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 274.3 in stage 0.0 (TID 1335) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 351] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 274.4 in stage 0.0 (TID 1603, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 820.0 in stage 0.0 (TID 1604, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 820, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 47.5 in stage 0.0 (TID 1317) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 352] 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 62.3 in stage 0.0 (TID 1262) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 353] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 62.4 in stage 0.0 (TID 1605, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 714.0 in stage 0.0 (TID 1144) in 2848 ms on jg1-w-19.c.maclab-ukbb.internal (executor 133) (426/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 47.6 in stage 0.0 (TID 1606, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 532.1 in stage 0.0 (TID 1058) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 354] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 532.2 in stage 0.0 (TID 1607, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 532, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 761.0 in stage 0.0 (TID 1322) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 355] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 761.1 in stage 0.0 (TID 1608, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 761, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 52.6 in stage 0.0 (TID 1363) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 356] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 52.7 in stage 0.0 (TID 1609, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 196.3 in stage 0.0 (TID 1204) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 357] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 196.4 in stage 0.0 (TID 1610, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 495.2 in stage 0.0 (TID 1291) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 358] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 495.3 in stage 0.0 (TID 1611, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 401.1 in stage 0.0 (TID 1237) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 359] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 401.2 in stage 0.0 (TID 1612, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 585.1 in stage 0.0 (TID 1165) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 360] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 585.2 in stage 0.0 (TID 1613, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 585, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 683.0 in stage 0.0 (TID 1076) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 361] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 683.1 in stage 0.0 (TID 1614, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 683, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 162.2 in stage 0.0 (TID 1251) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 362] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 162.3 in stage 0.0 (TID 1615, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 162, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 167.4 in stage 0.0 (TID 1338) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 363] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 167.5 in stage 0.0 (TID 1616, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 158.4 in stage 0.0 (TID 1264) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 364] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 158.5 in stage 0.0 (TID 1617, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 668.0 in stage 0.0 (TID 1027) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 365] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 668.1 in stage 0.0 (TID 1618, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 668, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 192.3 in stage 0.0 (TID 1256) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 366] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 192.4 in stage 0.0 (TID 1619, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 665.0 in stage 0.0 (TID 1021) in 3612 ms on jg1-w-27.c.maclab-ukbb.internal (executor 149) (427/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 821.0 in stage 0.0 (TID 1620, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 215.1 in stage 0.0 (TID 717) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 367] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 215.2 in stage 0.0 (TID 1621, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 215, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 751.0 in stage 0.0 (TID 1266) in 2139 ms on jg1-w-6.c.maclab-ukbb.internal (executor 176) (428/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 822.0 in stage 0.0 (TID 1622, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 822, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 475.3 in stage 0.0 (TID 1330) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 368] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 475.4 in stage 0.0 (TID 1623, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 735.0 in stage 0.0 (TID 1213) in 2495 ms on jg1-w-1.c.maclab-ukbb.internal (executor 80) (429/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 823.0 in stage 0.0 (TID 1624, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 823, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 732.0 in stage 0.0 (TID 1206) in 2567 ms on jg1-w-82.c.maclab-ukbb.internal (executor 108) (430/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 824.0 in stage 0.0 (TID 1625, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 824, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 19.3 in stage 0.0 (TID 1196) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 369] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 19.4 in stage 0.0 (TID 1626, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 392.2 in stage 0.0 (TID 1325) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 370] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 392.3 in stage 0.0 (TID 1627, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 825.0 in stage 0.0 (TID 1628, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 825, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 348.2 in stage 0.0 (TID 1320) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 371] 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 717.0 in stage 0.0 (TID 1151) in 2918 ms on jg1-w-26.c.maclab-ukbb.internal (executor 16) (431/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 348.3 in stage 0.0 (TID 1629, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 535.2 in stage 0.0 (TID 1312) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 372] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 535.3 in stage 0.0 (TID 1630, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 624.1 in stage 0.0 (TID 1248) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 373] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 624.2 in stage 0.0 (TID 1631, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 624, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 289.3 in stage 0.0 (TID 1241) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 374] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 289.4 in stage 0.0 (TID 1632, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 351.3 in stage 0.0 (TID 1299) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 375] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 351.4 in stage 0.0 (TID 1633, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 193.4 in stage 0.0 (TID 1309) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 376] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 193.5 in stage 0.0 (TID 1634, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 578.1 in stage 0.0 (TID 1072) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 377] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 578.2 in stage 0.0 (TID 1635, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 578, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 58.5 in stage 0.0 (TID 1345) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 378] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 58.6 in stage 0.0 (TID 1636, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 491.2 in stage 0.0 (TID 1284) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 379] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 491.3 in stage 0.0 (TID 1637, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 526.2 in stage 0.0 (TID 1289) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 380] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 526.3 in stage 0.0 (TID 1638, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 526, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 153.3 in stage 0.0 (TID 1367) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 381] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 153.4 in stage 0.0 (TID 1639, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 347.2 in stage 0.0 (TID 1358) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 382] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 347.3 in stage 0.0 (TID 1640, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 197.3 in stage 0.0 (TID 1253) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 383] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 197.4 in stage 0.0 (TID 1641, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 759.0 in stage 0.0 (TID 1311) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 384] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 759.1 in stage 0.0 (TID 1642, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 759, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 734.0 in stage 0.0 (TID 1212) in 2575 ms on jg1-w-64.c.maclab-ukbb.internal (executor 40) (432/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 826.0 in stage 0.0 (TID 1643, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 826, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 334.2 in stage 0.0 (TID 1308) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 385] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 334.3 in stage 0.0 (TID 1644, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 541.1 in stage 0.0 (TID 1231) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 386] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 541.2 in stage 0.0 (TID 1645, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 541, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 664.0 in stage 0.0 (TID 1019) in 3741 ms on jg1-w-41.c.maclab-ukbb.internal (executor 174) (433/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 827.0 in stage 0.0 (TID 1646, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 827, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 828.0 in stage 0.0 (TID 1647, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 828, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 729.0 in stage 0.0 (TID 1198) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 387] 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 115.3 in stage 0.0 (TID 1159) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 388] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 115.4 in stage 0.0 (TID 1648, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 115, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 497.2 in stage 0.0 (TID 1280) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 389] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 497.3 in stage 0.0 (TID 1649, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 0.8 in stage 0.0 (TID 1236) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 390] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 0.9 in stage 0.0 (TID 1650, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 762.0 in stage 0.0 (TID 1324) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 391] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 762.1 in stage 0.0 (TID 1651, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 157.5 in stage 0.0 (TID 1355) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 392] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 157.6 in stage 0.0 (TID 1652, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 733.0 in stage 0.0 (TID 1210) in 2634 ms on jg1-w-98.c.maclab-ukbb.internal (executor 62) (434/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 729.1 in stage 0.0 (TID 1653, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 729, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 492.2 in stage 0.0 (TID 1287) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 393] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 492.3 in stage 0.0 (TID 1654, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 644.1 in stage 0.0 (TID 1329) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 394] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 644.2 in stage 0.0 (TID 1655, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 741.0 in stage 0.0 (TID 1232) in 2521 ms on jg1-w-33.c.maclab-ukbb.internal (executor 140) (435/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 829.0 in stage 0.0 (TID 1656, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 829, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 572.0 in stage 0.0 (TID 757) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 395] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 572.1 in stage 0.0 (TID 1657, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 572, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 769.0 in stage 0.0 (TID 1353) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 396] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 769.1 in stage 0.0 (TID 1658, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 277.3 in stage 0.0 (TID 1302) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 397] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 277.4 in stage 0.0 (TID 1659, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 518.2 in stage 0.0 (TID 1296) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 398] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 518.3 in stage 0.0 (TID 1660, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 723.0 in stage 0.0 (TID 1172) in 2903 ms on jg1-w-1.c.maclab-ukbb.internal (executor 123) (436/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 830.0 in stage 0.0 (TID 1661, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 830, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 536.2 in stage 0.0 (TID 1326) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 399] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 536.3 in stage 0.0 (TID 1662, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 136.3 in stage 0.0 (TID 1215) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 400] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 136.4 in stage 0.0 (TID 1663, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 657.0 in stage 0.0 (TID 995) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 401] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 657.1 in stage 0.0 (TID 1664, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 657, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 360.2 in stage 0.0 (TID 1346) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 402] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 360.3 in stage 0.0 (TID 1665, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 628.1 in stage 0.0 (TID 1357) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 403] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 628.2 in stage 0.0 (TID 1666, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 425.3 in stage 0.0 (TID 1286) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 404] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 425.4 in stage 0.0 (TID 1667, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 435.3 in stage 0.0 (TID 1292) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 405] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 435.4 in stage 0.0 (TID 1668, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 442.3 in stage 0.0 (TID 1337) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 406] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 442.4 in stage 0.0 (TID 1669, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 81.5 in stage 0.0 (TID 1316) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 407] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 81.6 in stage 0.0 (TID 1670, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 596.1 in stage 0.0 (TID 1113) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 408] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 596.2 in stage 0.0 (TID 1671, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 605.1 in stage 0.0 (TID 1194) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 409] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 605.2 in stage 0.0 (TID 1672, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 605, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 521.1 in stage 0.0 (TID 1085) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 410] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 521.2 in stage 0.0 (TID 1673, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 521, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 756.0 in stage 0.0 (TID 1294) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 411] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 756.1 in stage 0.0 (TID 1674, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 703.0 in stage 0.0 (TID 1122) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 412] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 703.1 in stage 0.0 (TID 1675, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 703, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 725.0 in stage 0.0 (TID 1175) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 413] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 725.1 in stage 0.0 (TID 1676, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 725, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 205.4 in stage 0.0 (TID 1369) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 414] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 205.5 in stage 0.0 (TID 1677, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 745.0 in stage 0.0 (TID 1249) in 2556 ms on jg1-w-40.c.maclab-ukbb.internal (executor 41) (437/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 831.0 in stage 0.0 (TID 1678, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 831, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 195.4 in stage 0.0 (TID 1368) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 415] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 195.5 in stage 0.0 (TID 1679, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 592.1 in stage 0.0 (TID 1395) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 416] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 592.2 in stage 0.0 (TID 1680, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 130.2 in stage 0.0 (TID 1279) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 417] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 130.3 in stage 0.0 (TID 1681, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 130, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 248.3 in stage 0.0 (TID 1319) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 418] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 248.4 in stage 0.0 (TID 1682, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 655.1 in stage 0.0 (TID 1381) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 419] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 655.2 in stage 0.0 (TID 1683, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 655, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 598.2 in stage 0.0 (TID 1328) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 420] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 598.3 in stage 0.0 (TID 1684, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 276.3 in stage 0.0 (TID 1382) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 421] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 276.4 in stage 0.0 (TID 1685, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 366.2 in stage 0.0 (TID 1349) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 422] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 366.3 in stage 0.0 (TID 1686, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 749.0 in stage 0.0 (TID 1261) in 2543 ms on jg1-w-50.c.maclab-ukbb.internal (executor 19) (438/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 832.0 in stage 0.0 (TID 1687, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 832, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 500.2 in stage 0.0 (TID 1354) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 423] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 500.3 in stage 0.0 (TID 1688, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 202.4 in stage 0.0 (TID 1401) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 424] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 202.5 in stage 0.0 (TID 1689, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 833.0 in stage 0.0 (TID 1690, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 833, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 188.4 in stage 0.0 (TID 1362) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 425] 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 206.4 in stage 0.0 (TID 1391) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 426] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 206.5 in stage 0.0 (TID 1691, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 109.3 in stage 0.0 (TID 1340) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 427] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 109.4 in stage 0.0 (TID 1692, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 186.3 in stage 0.0 (TID 1334) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 428] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 186.4 in stage 0.0 (TID 1693, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 519.2 in stage 0.0 (TID 1413) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 429] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 519.3 in stage 0.0 (TID 1694, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 607.1 in stage 0.0 (TID 1270) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 430] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 607.2 in stage 0.0 (TID 1695, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 607, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 350.2 in stage 0.0 (TID 1341) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 431] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 350.3 in stage 0.0 (TID 1696, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 350, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 680.1 in stage 0.0 (TID 1336) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 432] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 680.2 in stage 0.0 (TID 1697, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 669.0 in stage 0.0 (TID 1032) in 3939 ms on jg1-w-57.c.maclab-ukbb.internal (executor 177) (439/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 188.5 in stage 0.0 (TID 1698, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 743.0 in stage 0.0 (TID 1240) in 2737 ms on jg1-w-99.c.maclab-ukbb.internal (executor 30) (440/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 834.0 in stage 0.0 (TID 1699, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 834, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 609.2 in stage 0.0 (TID 1380) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 433] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 609.3 in stage 0.0 (TID 1700, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 361.2 in stage 0.0 (TID 1331) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 434] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 361.3 in stage 0.0 (TID 1701, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 361, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 835.0 in stage 0.0 (TID 1702, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 835, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 170.4 in stage 0.0 (TID 1351) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 435] 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 422.3 in stage 0.0 (TID 1318) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 436] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 422.4 in stage 0.0 (TID 1703, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 694.1 in stage 0.0 (TID 1405) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 437] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 694.2 in stage 0.0 (TID 1704, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 506.2 in stage 0.0 (TID 1376) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 438] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 506.3 in stage 0.0 (TID 1705, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 767.0 in stage 0.0 (TID 1350) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 439] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 767.1 in stage 0.0 (TID 1706, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 767, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 170.5 in stage 0.0 (TID 1707, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 477.2 in stage 0.0 (TID 1274) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 440] 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 504.3 in stage 0.0 (TID 1424) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 441] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 504.4 in stage 0.0 (TID 1708, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 554.2 in stage 0.0 (TID 1386) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 442] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 554.3 in stage 0.0 (TID 1709, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 220.4 in stage 0.0 (TID 1393) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 443] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 220.5 in stage 0.0 (TID 1710, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 737.0 in stage 0.0 (TID 1220) in 2913 ms on jg1-w-49.c.maclab-ukbb.internal (executor 24) (441/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 477.3 in stage 0.0 (TID 1711, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 477, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 739.0 in stage 0.0 (TID 1225) in 2890 ms on jg1-w-18.c.maclab-ukbb.internal (executor 197) (442/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 836.0 in stage 0.0 (TID 1712, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 836, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 398.1 in stage 0.0 (TID 1348) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 444] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 398.2 in stage 0.0 (TID 1713, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 398, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 461.2 in stage 0.0 (TID 1297) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 445] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 461.3 in stage 0.0 (TID 1714, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 461, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 593.2 in stage 0.0 (TID 1374) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 446] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 593.3 in stage 0.0 (TID 1715, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 837.0 in stage 0.0 (TID 1716, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 837, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 20.5 in stage 0.0 (TID 1332) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 447] 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 486.2 in stage 0.0 (TID 1293) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 448] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 486.3 in stage 0.0 (TID 1717, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 748.0 in stage 0.0 (TID 1258) in 2710 ms on jg1-w-38.c.maclab-ukbb.internal (executor 28) (443/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 20.6 in stage 0.0 (TID 1718, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 765.0 in stage 0.0 (TID 1342) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 449] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 765.1 in stage 0.0 (TID 1719, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 765, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 660.1 in stage 0.0 (TID 1385) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 450] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 660.2 in stage 0.0 (TID 1720, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 660, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 288.3 in stage 0.0 (TID 1406) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 451] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 288.4 in stage 0.0 (TID 1721, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 487.3 in stage 0.0 (TID 1394) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 452] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 487.4 in stage 0.0 (TID 1722, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 63.5 in stage 0.0 (TID 1396) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 453] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 63.6 in stage 0.0 (TID 1723, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 418.4 in stage 0.0 (TID 1383) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 454] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 418.5 in stage 0.0 (TID 1724, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 201.4 in stage 0.0 (TID 1420) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 455] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 201.5 in stage 0.0 (TID 1725, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 780.0 in stage 0.0 (TID 1403) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 456] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 780.1 in stage 0.0 (TID 1726, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 111.3 in stage 0.0 (TID 1372) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 457] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 111.4 in stage 0.0 (TID 1727, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 568.1 in stage 0.0 (TID 932) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 458] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 568.2 in stage 0.0 (TID 1728, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 53.6 in stage 0.0 (TID 1444) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 459] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 53.7 in stage 0.0 (TID 1729, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 107.3 in stage 0.0 (TID 1303) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 460] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 107.4 in stage 0.0 (TID 1730, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 434.2 in stage 0.0 (TID 1314) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 461] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 434.3 in stage 0.0 (TID 1731, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 434, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 273.2 in stage 0.0 (TID 1259) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 462] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 273.3 in stage 0.0 (TID 1732, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 273, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 358.2 in stage 0.0 (TID 1304) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 463] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 358.3 in stage 0.0 (TID 1733, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 358, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 747.0 in stage 0.0 (TID 1257) in 2815 ms on jg1-w-31.c.maclab-ukbb.internal (executor 183) (444/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 838.0 in stage 0.0 (TID 1734, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 838, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 755.0 in stage 0.0 (TID 1285) in 2605 ms on jg1-w-70.c.maclab-ukbb.internal (executor 135) (445/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 839.0 in stage 0.0 (TID 1735, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 839, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 257.4 in stage 0.0 (TID 1419) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 464] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 257.5 in stage 0.0 (TID 1736, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 713.1 in stage 0.0 (TID 1409) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 465] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 713.2 in stage 0.0 (TID 1737, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 51.4 in stage 0.0 (TID 1323) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 466] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 51.5 in stage 0.0 (TID 1738, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 773.0 in stage 0.0 (TID 1370) in 2145 ms on jg1-w-81.c.maclab-ukbb.internal (executor 111) (446/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 840.0 in stage 0.0 (TID 1739, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 840, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 719.1 in stage 0.0 (TID 1414) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 467] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 719.2 in stage 0.0 (TID 1740, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 653.1 in stage 0.0 (TID 1377) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 468] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 653.2 in stage 0.0 (TID 1741, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 653, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 151.4 in stage 0.0 (TID 1402) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 469] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 151.5 in stage 0.0 (TID 1742, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 225.4 in stage 0.0 (TID 1387) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 470] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 225.5 in stage 0.0 (TID 1743, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 752.0 in stage 0.0 (TID 1276) in 2750 ms on jg1-w-61.c.maclab-ukbb.internal (executor 142) (447/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 841.0 in stage 0.0 (TID 1744, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 841, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 514.1 in stage 0.0 (TID 1112) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 471] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 514.2 in stage 0.0 (TID 1745, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 514, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 684.0 in stage 0.0 (TID 1077) in 3957 ms on jg1-w-48.c.maclab-ukbb.internal (executor 37) (448/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 842.0 in stage 0.0 (TID 1746, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 842, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 777.0 in stage 0.0 (TID 1390) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 472] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 777.1 in stage 0.0 (TID 1747, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 701.0 in stage 0.0 (TID 1116) in 3733 ms on jg1-w-54.c.maclab-ukbb.internal (executor 100) (449/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 843.0 in stage 0.0 (TID 1748, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 843, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 774.0 in stage 0.0 (TID 1371) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 473] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 774.1 in stage 0.0 (TID 1749, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 774, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 658.1 in stage 0.0 (TID 1389) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 474] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 658.2 in stage 0.0 (TID 1750, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 658, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 444.4 in stage 0.0 (TID 1422) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 475] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 444.5 in stage 0.0 (TID 1751, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 738.0 in stage 0.0 (TID 1222) in 3169 ms on jg1-w-31.c.maclab-ukbb.internal (executor 183) (450/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 844.0 in stage 0.0 (TID 1752, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 844, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 187.4 in stage 0.0 (TID 1421) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 476] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 187.5 in stage 0.0 (TID 1753, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 753.0 in stage 0.0 (TID 1277) in 2806 ms on jg1-w-80.c.maclab-ukbb.internal (executor 18) (451/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 845.0 in stage 0.0 (TID 1754, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 845, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 693.0 in stage 0.0 (TID 1098) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 477] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 693.1 in stage 0.0 (TID 1755, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 693, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 489.2 in stage 0.0 (TID 1506) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 478] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 489.3 in stage 0.0 (TID 1756, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 623.0 in stage 0.0 (TID 902) in 5084 ms on jg1-w-76.c.maclab-ukbb.internal (executor 92) (452/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 846.0 in stage 0.0 (TID 1757, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 846, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 587.0 in stage 0.0 (TID 793) in 6099 ms on jg1-w-84.c.maclab-ukbb.internal (executor 122) (453/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 847.0 in stage 0.0 (TID 1758, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 847, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 124.3 in stage 0.0 (TID 1397) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 479] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 124.4 in stage 0.0 (TID 1759, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 198.4 in stage 0.0 (TID 1460) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 480] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 198.5 in stage 0.0 (TID 1760, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 439.3 in stage 0.0 (TID 1313) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 481] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 439.4 in stage 0.0 (TID 1761, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 848.0 in stage 0.0 (TID 1762, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 848, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 496.3 in stage 0.0 (TID 1432) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 482] 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 771.0 in stage 0.0 (TID 1361) in 2331 ms on jg1-w-56.c.maclab-ukbb.internal (executor 22) (454/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 496.4 in stage 0.0 (TID 1763, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 781.0 in stage 0.0 (TID 1408) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 483] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 781.1 in stage 0.0 (TID 1764, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 303.3 in stage 0.0 (TID 1486) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 484] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 303.4 in stage 0.0 (TID 1765, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 405.3 in stage 0.0 (TID 1298) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 485] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 405.4 in stage 0.0 (TID 1766, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 405, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 155.3 in stage 0.0 (TID 1339) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 486] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 155.4 in stage 0.0 (TID 1767, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 155, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 426.5 in stage 0.0 (TID 1498) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 487] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 426.6 in stage 0.0 (TID 1768, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 177.4 in stage 0.0 (TID 1462) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 488] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 177.5 in stage 0.0 (TID 1769, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 699.1 in stage 0.0 (TID 1456) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 489] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 699.2 in stage 0.0 (TID 1770, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 720.0 in stage 0.0 (TID 1166) in 3625 ms on jg1-w-62.c.maclab-ukbb.internal (executor 2) (455/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 849.0 in stage 0.0 (TID 1771, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 849, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 199.5 in stage 0.0 (TID 1500) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 490] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 199.6 in stage 0.0 (TID 1772, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 505.3 in stage 0.0 (TID 1410) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 491] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 505.4 in stage 0.0 (TID 1773, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 850.0 in stage 0.0 (TID 1774, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 850, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 408.6 in stage 0.0 (TID 1502) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 492] 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 400.2 in stage 0.0 (TID 1477) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 493] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 400.3 in stage 0.0 (TID 1775, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 408.7 in stage 0.0 (TID 1776, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 242.3 in stage 0.0 (TID 1356) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 494] 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 121.4 in stage 0.0 (TID 1443) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 495] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 121.5 in stage 0.0 (TID 1777, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 340.2 in stage 0.0 (TID 1208) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 496] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 340.3 in stage 0.0 (TID 1778, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 242.4 in stage 0.0 (TID 1779, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 724.0 in stage 0.0 (TID 1174) in 3607 ms on jg1-w-61.c.maclab-ukbb.internal (executor 109) (456/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 169.4 in stage 0.0 (TID 1446) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 497] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 169.5 in stage 0.0 (TID 1780, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Finished task 770.0 in stage 0.0 (TID 1360) in 2448 ms on jg1-w-17.c.maclab-ukbb.internal (executor 166) (457/30000) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 851.0 in stage 0.0 (TID 1781, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 851, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 852.0 in stage 0.0 (TID 1782, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 852, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 443.4 in stage 0.0 (TID 1434) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 498] 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 727.1 in stage 0.0 (TID 1535) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 499] 2020-04-02 15:10:43 TaskSetManager: INFO: Starting task 727.2 in stage 0.0 (TID 1783, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:43 TaskSetManager: INFO: Lost task 513.3 in stage 0.0 (TID 1479) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 500] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 513.4 in stage 0.0 (TID 1784, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 142.4 in stage 0.0 (TID 1508) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 501] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 142.5 in stage 0.0 (TID 1785, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 803.0 in stage 0.0 (TID 1509) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 502] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 803.1 in stage 0.0 (TID 1786, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 803, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 631.1 in stage 0.0 (TID 1411) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 503] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 631.2 in stage 0.0 (TID 1787, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 631, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 80.3 in stage 0.0 (TID 1373) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 504] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 80.4 in stage 0.0 (TID 1788, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 80, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 754.0 in stage 0.0 (TID 1282) in 2952 ms on jg1-w-22.c.maclab-ukbb.internal (executor 8) (458/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 443.5 in stage 0.0 (TID 1789, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 488.2 in stage 0.0 (TID 1366) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 505] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 488.3 in stage 0.0 (TID 1790, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 106.4 in stage 0.0 (TID 1388) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 506] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 106.5 in stage 0.0 (TID 1791, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 275.4 in stage 0.0 (TID 1431) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 507] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 275.5 in stage 0.0 (TID 1792, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 372.2 in stage 0.0 (TID 1427) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 508] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 372.3 in stage 0.0 (TID 1793, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 346.2 in stage 0.0 (TID 1435) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 509] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 346.3 in stage 0.0 (TID 1794, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 758.0 in stage 0.0 (TID 1310) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 510] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 758.1 in stage 0.0 (TID 1795, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 758, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 728.1 in stage 0.0 (TID 1469) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 511] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 728.2 in stage 0.0 (TID 1796, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 667.1 in stage 0.0 (TID 1404) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 512] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 667.2 in stage 0.0 (TID 1797, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 667, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 707.1 in stage 0.0 (TID 1491) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 513] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 707.2 in stage 0.0 (TID 1798, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 791.0 in stage 0.0 (TID 1463) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 514] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 791.1 in stage 0.0 (TID 1799, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 791, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 582.1 in stage 0.0 (TID 1271) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 515] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 582.2 in stage 0.0 (TID 1800, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 582, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 783.0 in stage 0.0 (TID 1430) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 516] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 783.1 in stage 0.0 (TID 1801, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 783, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 790.0 in stage 0.0 (TID 1459) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 517] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 790.1 in stage 0.0 (TID 1802, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 790, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 634.1 in stage 0.0 (TID 1364) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 518] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 634.2 in stage 0.0 (TID 1803, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 634, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 218.3 in stage 0.0 (TID 1407) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 519] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 218.4 in stage 0.0 (TID 1804, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 763.0 in stage 0.0 (TID 1327) in 2740 ms on jg1-w-80.c.maclab-ukbb.internal (executor 13) (459/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 853.0 in stage 0.0 (TID 1805, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 853, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 414.4 in stage 0.0 (TID 1499) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 520] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 414.5 in stage 0.0 (TID 1806, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 333.4 in stage 0.0 (TID 1546) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 521] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 333.5 in stage 0.0 (TID 1807, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 854.0 in stage 0.0 (TID 1808, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 854, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 327.2 in stage 0.0 (TID 1442) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 522] 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 515.2 in stage 0.0 (TID 1466) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 523] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 515.3 in stage 0.0 (TID 1809, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 515, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 415.5 in stage 0.0 (TID 1537) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 524] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 415.6 in stage 0.0 (TID 1810, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 766.0 in stage 0.0 (TID 1344) in 2713 ms on jg1-w-82.c.maclab-ukbb.internal (executor 108) (460/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 327.3 in stage 0.0 (TID 1811, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 57.4 in stage 0.0 (TID 1347) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 525] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 57.5 in stage 0.0 (TID 1812, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 775.0 in stage 0.0 (TID 1379) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 526] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 775.1 in stage 0.0 (TID 1813, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 775, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 776.0 in stage 0.0 (TID 1384) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 527] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 776.1 in stage 0.0 (TID 1814, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 776, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 750.0 in stage 0.0 (TID 1265) in 3200 ms on jg1-w-6.c.maclab-ukbb.internal (executor 153) (461/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 855.0 in stage 0.0 (TID 1815, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 855, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 690.1 in stage 0.0 (TID 1495) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 528] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 690.2 in stage 0.0 (TID 1816, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 252.0 in stage 0.0 (TID 257) in 16738 ms on jg1-w-19.c.maclab-ukbb.internal (executor 101) (462/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 856.0 in stage 0.0 (TID 1817, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 856, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 449.5 in stage 0.0 (TID 1549) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 529] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 449.6 in stage 0.0 (TID 1818, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 459.3 in stage 0.0 (TID 1489) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 530] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 459.4 in stage 0.0 (TID 1819, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 156.5 in stage 0.0 (TID 1511) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 531] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 156.6 in stage 0.0 (TID 1820, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 31.5 in stage 0.0 (TID 1412) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 532] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 31.6 in stage 0.0 (TID 1821, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 125.3 in stage 0.0 (TID 1416) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 533] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 125.4 in stage 0.0 (TID 1822, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 335.3 in stage 0.0 (TID 1522) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 534] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 335.4 in stage 0.0 (TID 1823, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 212.4 in stage 0.0 (TID 1454) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 535] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 212.5 in stage 0.0 (TID 1824, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 164.3 in stage 0.0 (TID 1343) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 536] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 164.4 in stage 0.0 (TID 1825, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 56.4 in stage 0.0 (TID 1359) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 537] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 56.5 in stage 0.0 (TID 1826, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 474.3 in stage 0.0 (TID 1447) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 538] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 474.4 in stage 0.0 (TID 1827, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 794.0 in stage 0.0 (TID 1482) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 539] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 794.1 in stage 0.0 (TID 1828, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 794, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 152.2 in stage 0.0 (TID 1552) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 540] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 152.3 in stage 0.0 (TID 1829, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 113.4 in stage 0.0 (TID 1480) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 541] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 113.5 in stage 0.0 (TID 1830, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 544.3 in stage 0.0 (TID 1523) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 542] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 544.4 in stage 0.0 (TID 1831, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 760.0 in stage 0.0 (TID 1321) in 2914 ms on jg1-w-78.c.maclab-ukbb.internal (executor 10) (463/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 857.0 in stage 0.0 (TID 1832, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 857, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 614.0 in stage 0.0 (TID 868) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 543] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 614.1 in stage 0.0 (TID 1833, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 768.0 in stage 0.0 (TID 1352) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 544] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 768.1 in stage 0.0 (TID 1834, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 768, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 789.0 in stage 0.0 (TID 1458) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 545] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 789.1 in stage 0.0 (TID 1835, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 423.5 in stage 0.0 (TID 1526) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 546] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 423.6 in stage 0.0 (TID 1836, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 282.4 in stage 0.0 (TID 1561) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 547] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 282.5 in stage 0.0 (TID 1837, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 679.1 in stage 0.0 (TID 1451) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 548] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 679.2 in stage 0.0 (TID 1838, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 679, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 194.5 in stage 0.0 (TID 1540) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 549] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 194.6 in stage 0.0 (TID 1839, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 462.3 in stage 0.0 (TID 1433) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 550] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 462.4 in stage 0.0 (TID 1840, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 462, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 517.3 in stage 0.0 (TID 1428) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 551] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 517.4 in stage 0.0 (TID 1841, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 154.9 in stage 0.0 (TID 1503) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 552] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 154.10 in stage 0.0 (TID 1842, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 326.2 in stage 0.0 (TID 1139) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 553] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 326.3 in stage 0.0 (TID 1843, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 326, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 778.0 in stage 0.0 (TID 1392) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 554] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 778.1 in stage 0.0 (TID 1844, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 778, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 520.2 in stage 0.0 (TID 1429) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 555] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 520.3 in stage 0.0 (TID 1845, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 354.3 in stage 0.0 (TID 1445) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 556] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 354.4 in stage 0.0 (TID 1846, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 173.3 in stage 0.0 (TID 1399) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 557] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 173.4 in stage 0.0 (TID 1847, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 858.0 in stage 0.0 (TID 1848, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 858, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 390.2 in stage 0.0 (TID 1415) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 558] 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 814.0 in stage 0.0 (TID 1571) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 559] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 814.1 in stage 0.0 (TID 1849, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 814, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 772.0 in stage 0.0 (TID 1365) in 2840 ms on jg1-w-45.c.maclab-ukbb.internal (executor 38) (464/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 390.3 in stage 0.0 (TID 1850, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 764.0 in stage 0.0 (TID 1333) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 560] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 764.1 in stage 0.0 (TID 1851, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 764, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 709.1 in stage 0.0 (TID 1452) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 561] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 709.2 in stage 0.0 (TID 1852, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 757.0 in stage 0.0 (TID 1306) in 3173 ms on jg1-w-77.c.maclab-ukbb.internal (executor 128) (465/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 859.0 in stage 0.0 (TID 1853, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 859, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 290.2 in stage 0.0 (TID 1468) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 562] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 290.3 in stage 0.0 (TID 1854, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 290, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 476.3 in stage 0.0 (TID 1472) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 563] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 476.4 in stage 0.0 (TID 1855, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 718.1 in stage 0.0 (TID 1501) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 564] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 718.2 in stage 0.0 (TID 1856, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 742.1 in stage 0.0 (TID 1564) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 565] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 742.2 in stage 0.0 (TID 1857, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 407.5 in stage 0.0 (TID 1505) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 566] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 407.6 in stage 0.0 (TID 1858, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 721.1 in stage 0.0 (TID 1570) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 567] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 721.2 in stage 0.0 (TID 1859, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 160.3 in stage 0.0 (TID 1494) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 568] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 160.4 in stage 0.0 (TID 1860, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 502.3 in stage 0.0 (TID 1461) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 569] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 502.4 in stage 0.0 (TID 1861, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 697.1 in stage 0.0 (TID 1496) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 570] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 697.2 in stage 0.0 (TID 1862, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 697, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 75.5 in stage 0.0 (TID 1543) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 571] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 75.6 in stage 0.0 (TID 1863, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 597.2 in stage 0.0 (TID 1437) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 572] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 597.3 in stage 0.0 (TID 1864, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 584.2 in stage 0.0 (TID 1567) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 573] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 584.3 in stage 0.0 (TID 1865, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 454.2 in stage 0.0 (TID 1398) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 574] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 454.3 in stage 0.0 (TID 1866, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 454, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 588.2 in stage 0.0 (TID 1473) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 575] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 588.3 in stage 0.0 (TID 1867, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 588, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 185.4 in stage 0.0 (TID 1553) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 576] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 185.5 in stage 0.0 (TID 1868, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 698.1 in stage 0.0 (TID 1464) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 577] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 698.2 in stage 0.0 (TID 1869, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 698, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 493.2 in stage 0.0 (TID 1378) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 578] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 493.3 in stage 0.0 (TID 1870, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 673.1 in stage 0.0 (TID 1426) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 579] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 673.2 in stage 0.0 (TID 1871, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 299.2 in stage 0.0 (TID 1474) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 580] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 299.3 in stage 0.0 (TID 1872, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 299, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 507.2 in stage 0.0 (TID 1525) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 581] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 507.3 in stage 0.0 (TID 1873, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 49.5 in stage 0.0 (TID 1538) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 582] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 49.6 in stage 0.0 (TID 1874, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 58.6 in stage 0.0 (TID 1636) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 583] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 58.7 in stage 0.0 (TID 1875, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 591.1 in stage 0.0 (TID 1514) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 584] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 591.2 in stage 0.0 (TID 1876, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 591, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 710.1 in stage 0.0 (TID 1578) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 585] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 710.2 in stage 0.0 (TID 1877, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 224.3 in stage 0.0 (TID 1448) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 586] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 224.4 in stage 0.0 (TID 1878, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 806.0 in stage 0.0 (TID 1521) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 587] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 806.1 in stage 0.0 (TID 1879, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 806, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 478.3 in stage 0.0 (TID 1516) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 588] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 478.4 in stage 0.0 (TID 1880, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 0.9 in stage 0.0 (TID 1650) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 589] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 0.10 in stage 0.0 (TID 1881, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 331.4 in stage 0.0 (TID 1556) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 590] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 331.5 in stage 0.0 (TID 1882, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 726.0 in stage 0.0 (TID 1176) in 4191 ms on jg1-w-44.c.maclab-ukbb.internal (executor 105) (466/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 860.0 in stage 0.0 (TID 1883, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 860, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 543.2 in stage 0.0 (TID 1467) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 591] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 543.3 in stage 0.0 (TID 1884, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 508.2 in stage 0.0 (TID 1471) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 592] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 508.3 in stage 0.0 (TID 1885, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 508, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 143.4 in stage 0.0 (TID 1534) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 593] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 143.5 in stage 0.0 (TID 1886, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 861.0 in stage 0.0 (TID 1887, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 861, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 39.5 in stage 0.0 (TID 1450) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 594] 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 428.4 in stage 0.0 (TID 1586) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 595] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 428.5 in stage 0.0 (TID 1888, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 730.1 in stage 0.0 (TID 1533) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 596] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 730.2 in stage 0.0 (TID 1889, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 730, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 786.0 in stage 0.0 (TID 1441) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 597] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 786.1 in stage 0.0 (TID 1890, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 786, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 601.2 in stage 0.0 (TID 1539) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 598] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 601.3 in stage 0.0 (TID 1891, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 41.4 in stage 0.0 (TID 1453) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 599] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 41.5 in stage 0.0 (TID 1892, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 627.2 in stage 0.0 (TID 1602) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 600] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 627.3 in stage 0.0 (TID 1893, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 52.7 in stage 0.0 (TID 1609) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 601] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 52.8 in stage 0.0 (TID 1894, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 1.8 in stage 0.0 (TID 1417) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 602] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 1.9 in stage 0.0 (TID 1895, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 64.4 in stage 0.0 (TID 1455) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 603] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 64.5 in stage 0.0 (TID 1896, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 797.0 in stage 0.0 (TID 1488) in 2279 ms on jg1-w-65.c.maclab-ukbb.internal (executor 4) (467/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 39.6 in stage 0.0 (TID 1897, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 247.4 in stage 0.0 (TID 1591) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 604] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 247.5 in stage 0.0 (TID 1898, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 399.7 in stage 0.0 (TID 1568) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 605] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 399.8 in stage 0.0 (TID 1899, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 744.1 in stage 0.0 (TID 1573) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 606] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 744.2 in stage 0.0 (TID 1900, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 612.1 in stage 0.0 (TID 1245) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 607] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 612.2 in stage 0.0 (TID 1901, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 612, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 511.3 in stage 0.0 (TID 1557) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 608] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 511.4 in stage 0.0 (TID 1902, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 409.5 in stage 0.0 (TID 1587) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 609] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 409.6 in stage 0.0 (TID 1903, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 769.1 in stage 0.0 (TID 1658) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 610] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 769.2 in stage 0.0 (TID 1904, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 761.1 in stage 0.0 (TID 1608) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 611] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 761.2 in stage 0.0 (TID 1905, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 761, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 391.1 in stage 0.0 (TID 1009) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 612] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 391.2 in stage 0.0 (TID 1906, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 391, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 810.0 in stage 0.0 (TID 1542) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 613] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 810.1 in stage 0.0 (TID 1907, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 810, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 330.1 in stage 0.0 (TID 1223) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 614] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 330.2 in stage 0.0 (TID 1908, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 330, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 862.0 in stage 0.0 (TID 1909, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 862, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 351.4 in stage 0.0 (TID 1633) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 615] 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 165.4 in stage 0.0 (TID 1518) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 616] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 165.5 in stage 0.0 (TID 1910, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 310.4 in stage 0.0 (TID 1551) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 617] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 310.5 in stage 0.0 (TID 1911, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 475.4 in stage 0.0 (TID 1623) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 618] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 475.5 in stage 0.0 (TID 1912, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 91.5 in stage 0.0 (TID 1562) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 619] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 91.6 in stage 0.0 (TID 1913, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 598.3 in stage 0.0 (TID 1684) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 620] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 598.4 in stage 0.0 (TID 1914, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 274.4 in stage 0.0 (TID 1603) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 621] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 274.5 in stage 0.0 (TID 1915, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 355.4 in stage 0.0 (TID 1580) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 622] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 355.5 in stage 0.0 (TID 1916, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 227.3 in stage 0.0 (TID 1425) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 623] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 227.4 in stage 0.0 (TID 1917, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 227, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 281.4 in stage 0.0 (TID 1579) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 624] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 281.5 in stage 0.0 (TID 1918, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 808.0 in stage 0.0 (TID 1531) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 625] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 808.1 in stage 0.0 (TID 1919, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 808, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 289.4 in stage 0.0 (TID 1632) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 626] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 289.5 in stage 0.0 (TID 1920, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 594.2 in stage 0.0 (TID 1520) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 627] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 594.3 in stage 0.0 (TID 1921, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 157.6 in stage 0.0 (TID 1652) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 628] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 157.7 in stage 0.0 (TID 1922, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 441.4 in stage 0.0 (TID 1527) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 629] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 441.5 in stage 0.0 (TID 1923, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 539.2 in stage 0.0 (TID 1550) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 630] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 539.3 in stage 0.0 (TID 1924, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 539, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 50.4 in stage 0.0 (TID 1558) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 631] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 50.5 in stage 0.0 (TID 1925, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 209.4 in stage 0.0 (TID 1596) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 632] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 209.5 in stage 0.0 (TID 1926, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 654.1 in stage 0.0 (TID 1438) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 633] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 654.2 in stage 0.0 (TID 1927, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 654, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 625.2 in stage 0.0 (TID 1590) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 634] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 625.3 in stage 0.0 (TID 1928, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 518.3 in stage 0.0 (TID 1660) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 635] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 518.4 in stage 0.0 (TID 1929, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 798.0 in stage 0.0 (TID 1490) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 636] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 798.1 in stage 0.0 (TID 1930, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 798, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 680.2 in stage 0.0 (TID 1697) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 637] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 680.3 in stage 0.0 (TID 1931, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 704.1 in stage 0.0 (TID 1532) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 638] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 704.2 in stage 0.0 (TID 1932, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 704, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 535.3 in stage 0.0 (TID 1630) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 639] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 535.4 in stage 0.0 (TID 1933, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 715.1 in stage 0.0 (TID 1559) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 640] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 715.2 in stage 0.0 (TID 1934, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 715, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 351.5 in stage 0.0 (TID 1935, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 820.0 in stage 0.0 (TID 1604) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 641] 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 460.3 in stage 0.0 (TID 1589) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 642] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 460.4 in stage 0.0 (TID 1936, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 820.1 in stage 0.0 (TID 1937, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 820, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 246.4 in stage 0.0 (TID 1565) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 643] 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 608.2 in stage 0.0 (TID 1536) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 644] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 608.3 in stage 0.0 (TID 1938, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 280.3 in stage 0.0 (TID 1530) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 645] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 280.4 in stage 0.0 (TID 1939, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 683.1 in stage 0.0 (TID 1614) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 646] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 683.2 in stage 0.0 (TID 1940, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 683, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 348.3 in stage 0.0 (TID 1629) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 647] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 348.4 in stage 0.0 (TID 1941, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 345.3 in stage 0.0 (TID 1600) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 648] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 345.4 in stage 0.0 (TID 1942, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 516.2 in stage 0.0 (TID 1592) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 649] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 516.3 in stage 0.0 (TID 1943, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 401.2 in stage 0.0 (TID 1612) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 650] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 401.3 in stage 0.0 (TID 1944, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 195.5 in stage 0.0 (TID 1679) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 651] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 195.6 in stage 0.0 (TID 1945, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 711.1 in stage 0.0 (TID 1465) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 652] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 711.2 in stage 0.0 (TID 1946, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 711, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 47.6 in stage 0.0 (TID 1606) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 653] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 47.7 in stage 0.0 (TID 1947, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 246.5 in stage 0.0 (TID 1948, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 620.1 in stage 0.0 (TID 1515) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 654] 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 630.0 in stage 0.0 (TID 933) in 6020 ms on jg1-w-55.c.maclab-ukbb.internal (executor 165) (468/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 620.2 in stage 0.0 (TID 1949, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 620, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 829.0 in stage 0.0 (TID 1656) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 655] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 829.1 in stage 0.0 (TID 1950, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 829, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 392.3 in stage 0.0 (TID 1627) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 656] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 392.4 in stage 0.0 (TID 1951, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 360.3 in stage 0.0 (TID 1665) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 657] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 360.4 in stage 0.0 (TID 1952, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 787.0 in stage 0.0 (TID 1449) in 2793 ms on jg1-w-45.c.maclab-ukbb.internal (executor 38) (469/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 863.0 in stage 0.0 (TID 1953, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 863, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 799.0 in stage 0.0 (TID 1493) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 658] 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 799.1 in stage 0.0 (TID 1954, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 799, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Finished task 782.0 in stage 0.0 (TID 1423) in 2948 ms on jg1-w-27.c.maclab-ukbb.internal (executor 175) (470/30000) 2020-04-02 15:10:44 TaskSetManager: INFO: Starting task 864.0 in stage 0.0 (TID 1955, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 864, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:44 TaskSetManager: INFO: Lost task 506.3 in stage 0.0 (TID 1705) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 659] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 506.4 in stage 0.0 (TID 1956, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 276.4 in stage 0.0 (TID 1685) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 660] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 276.5 in stage 0.0 (TID 1957, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 217.4 in stage 0.0 (TID 1548) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 661] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 217.5 in stage 0.0 (TID 1958, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 585.2 in stage 0.0 (TID 1613) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 662] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 585.3 in stage 0.0 (TID 1959, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 585, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 166.4 in stage 0.0 (TID 1597) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 663] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 166.5 in stage 0.0 (TID 1960, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 796.0 in stage 0.0 (TID 1484) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 664] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 796.1 in stage 0.0 (TID 1961, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 796, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 175.4 in stage 0.0 (TID 1517) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 665] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 175.5 in stage 0.0 (TID 1962, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 519.3 in stage 0.0 (TID 1694) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 666] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 519.4 in stage 0.0 (TID 1963, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 865.0 in stage 0.0 (TID 1964, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 865, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 167.5 in stage 0.0 (TID 1616) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 667] 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 533.0 in stage 0.0 (TID 668) in 8277 ms on jg1-w-68.c.maclab-ukbb.internal (executor 64) (471/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 167.6 in stage 0.0 (TID 1965, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 866.0 in stage 0.0 (TID 1966, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 866, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 762.1 in stage 0.0 (TID 1651) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 668] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 170.5 in stage 0.0 (TID 1707) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 669] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 170.6 in stage 0.0 (TID 1967, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 583.2 in stage 0.0 (TID 1575) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 670] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 583.3 in stage 0.0 (TID 1968, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 583, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 504.4 in stage 0.0 (TID 1708) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 671] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 504.5 in stage 0.0 (TID 1969, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 487.4 in stage 0.0 (TID 1722) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 672] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 487.5 in stage 0.0 (TID 1970, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 705.0 in stage 0.0 (TID 1126) in 4937 ms on jg1-w-52.c.maclab-ukbb.internal (executor 138) (472/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 762.2 in stage 0.0 (TID 1971, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 596.2 in stage 0.0 (TID 1671) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 673] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 596.3 in stage 0.0 (TID 1972, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 722.0 in stage 0.0 (TID 1168) in 4721 ms on jg1-w-85.c.maclab-ukbb.internal (executor 93) (473/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 867.0 in stage 0.0 (TID 1973, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 867, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 572.1 in stage 0.0 (TID 1657) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 674] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 572.2 in stage 0.0 (TID 1974, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 572, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 309.3 in stage 0.0 (TID 1492) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 675] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 309.4 in stage 0.0 (TID 1975, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 309, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 592.2 in stage 0.0 (TID 1680) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 676] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 592.3 in stage 0.0 (TID 1976, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 27.5 in stage 0.0 (TID 1375) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 677] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 27.6 in stage 0.0 (TID 1977, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 492.3 in stage 0.0 (TID 1654) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 678] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 492.4 in stage 0.0 (TID 1978, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 153.4 in stage 0.0 (TID 1639) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 679] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 153.5 in stage 0.0 (TID 1979, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 868.0 in stage 0.0 (TID 1980, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 868, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 788.0 in stage 0.0 (TID 1457) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 680] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 644.2 in stage 0.0 (TID 1655) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 681] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 644.3 in stage 0.0 (TID 1981, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 746.1 in stage 0.0 (TID 1519) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 682] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 746.2 in stage 0.0 (TID 1982, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 109.4 in stage 0.0 (TID 1692) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 683] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 109.5 in stage 0.0 (TID 1983, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 812.0 in stage 0.0 (TID 1545) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 684] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 812.1 in stage 0.0 (TID 1984, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 812, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 604.2 in stage 0.0 (TID 1547) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 685] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 604.3 in stage 0.0 (TID 1985, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 604, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 334.3 in stage 0.0 (TID 1644) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 686] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 334.4 in stage 0.0 (TID 1986, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 668.1 in stage 0.0 (TID 1618) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 687] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 668.2 in stage 0.0 (TID 1987, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 668, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 788.1 in stage 0.0 (TID 1988, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 788, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 191.4 in stage 0.0 (TID 1572) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 688] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 767.1 in stage 0.0 (TID 1706) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 689] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 767.2 in stage 0.0 (TID 1989, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 767, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 368.2 in stage 0.0 (TID 1478) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 690] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 368.3 in stage 0.0 (TID 1990, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 368, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 817.0 in stage 0.0 (TID 1588) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 691] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 817.1 in stage 0.0 (TID 1991, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 817, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 191.5 in stage 0.0 (TID 1992, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 206.5 in stage 0.0 (TID 1691) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 692] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 759.1 in stage 0.0 (TID 1642) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 693] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 759.2 in stage 0.0 (TID 1993, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 759, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 435.4 in stage 0.0 (TID 1668) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 694] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 435.5 in stage 0.0 (TID 1994, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 795.0 in stage 0.0 (TID 1483) in 2825 ms on jg1-w-78.c.maclab-ukbb.internal (executor 10) (474/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 206.6 in stage 0.0 (TID 1995, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 694.2 in stage 0.0 (TID 1704) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 695] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 694.3 in stage 0.0 (TID 1996, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 869.0 in stage 0.0 (TID 1997, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 869, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 186.4 in stage 0.0 (TID 1693) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 696] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 532.2 in stage 0.0 (TID 1607) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 697] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 532.3 in stage 0.0 (TID 1998, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 532, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 578.2 in stage 0.0 (TID 1635) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 698] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 578.3 in stage 0.0 (TID 1999, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 578, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 186.5 in stage 0.0 (TID 2000, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 427.4 in stage 0.0 (TID 1485) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 699] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 779.0 in stage 0.0 (TID 1400) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 700] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 779.1 in stage 0.0 (TID 2001, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 779, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 793.0 in stage 0.0 (TID 1476) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 701] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 793.1 in stage 0.0 (TID 2002, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 793, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 347.3 in stage 0.0 (TID 1640) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 702] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 347.4 in stage 0.0 (TID 2003, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 500.3 in stage 0.0 (TID 1688) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 703] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 500.4 in stage 0.0 (TID 2004, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 497.3 in stage 0.0 (TID 1649) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 704] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 497.4 in stage 0.0 (TID 2005, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 427.5 in stage 0.0 (TID 2006, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 554.3 in stage 0.0 (TID 1709) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 705] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 20.6 in stage 0.0 (TID 1718) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 706] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 20.7 in stage 0.0 (TID 2007, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 442.4 in stage 0.0 (TID 1669) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 707] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 442.5 in stage 0.0 (TID 2008, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 130.3 in stage 0.0 (TID 1681) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 708] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 130.4 in stage 0.0 (TID 2009, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 130, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 802.0 in stage 0.0 (TID 1507) in 2756 ms on jg1-w-79.c.maclab-ukbb.internal (executor 45) (475/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 554.4 in stage 0.0 (TID 2010, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 818.0 in stage 0.0 (TID 1593) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 709] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 818.1 in stage 0.0 (TID 2011, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 818, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 3.7 in stage 0.0 (TID 1566) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 710] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 3.8 in stage 0.0 (TID 2012, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 870.0 in stage 0.0 (TID 2013, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 870, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 871.0 in stage 0.0 (TID 2014, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 871, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 202.5 in stage 0.0 (TID 1689) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 711] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 158.5 in stage 0.0 (TID 1617) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 712] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 716.1 in stage 0.0 (TID 1475) on jg1-w-66.c.maclab-ukbb.internal, executor 159: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 713] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 716.2 in stage 0.0 (TID 2015, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 716, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 248.4 in stage 0.0 (TID 1682) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 714] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 248.5 in stage 0.0 (TID 2016, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 63.6 in stage 0.0 (TID 1723) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 715] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 63.7 in stage 0.0 (TID 2017, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 187.5 in stage 0.0 (TID 1753) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 716] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 187.6 in stage 0.0 (TID 2018, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 115.4 in stage 0.0 (TID 1648) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 717] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 115.5 in stage 0.0 (TID 2019, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 115, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 657.1 in stage 0.0 (TID 1664) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 718] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 657.2 in stage 0.0 (TID 2020, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 657, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 151.5 in stage 0.0 (TID 1742) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 719] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 151.6 in stage 0.0 (TID 2021, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 136.4 in stage 0.0 (TID 1663) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 720] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 136.5 in stage 0.0 (TID 2022, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 220.5 in stage 0.0 (TID 1710) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 721] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 220.6 in stage 0.0 (TID 2023, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 257.5 in stage 0.0 (TID 1736) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 722] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 257.6 in stage 0.0 (TID 2024, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 406.5 in stage 0.0 (TID 1581) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 723] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 406.6 in stage 0.0 (TID 2025, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 628.2 in stage 0.0 (TID 1666) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 724] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 628.3 in stage 0.0 (TID 2026, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 681.1 in stage 0.0 (TID 1583) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 725] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 681.2 in stage 0.0 (TID 2027, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 681, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 486.3 in stage 0.0 (TID 1717) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 726] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 486.4 in stage 0.0 (TID 2028, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 205.5 in stage 0.0 (TID 1677) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 727] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 205.6 in stage 0.0 (TID 2029, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 495.3 in stage 0.0 (TID 1611) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 728] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 495.4 in stage 0.0 (TID 2030, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 303.4 in stage 0.0 (TID 1765) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 729] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 303.5 in stage 0.0 (TID 2031, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 811.0 in stage 0.0 (TID 1544) in 2610 ms on jg1-w-59.c.maclab-ukbb.internal (executor 164) (476/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 158.6 in stage 0.0 (TID 2032, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 366.3 in stage 0.0 (TID 1686) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 730] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 366.4 in stage 0.0 (TID 2033, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 567.2 in stage 0.0 (TID 1563) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 731] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 567.3 in stage 0.0 (TID 2034, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 567, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 821.0 in stage 0.0 (TID 1620) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 732] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 821.1 in stage 0.0 (TID 2035, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 288.4 in stage 0.0 (TID 1721) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 733] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 288.5 in stage 0.0 (TID 2036, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 801.0 in stage 0.0 (TID 1504) in 2889 ms on jg1-w-58.c.maclab-ukbb.internal (executor 195) (477/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 202.6 in stage 0.0 (TID 2037, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 785.0 in stage 0.0 (TID 1440) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 734] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 785.1 in stage 0.0 (TID 2038, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 785, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 54.3 in stage 0.0 (TID 1305) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 735] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 54.4 in stage 0.0 (TID 2039, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 54, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 111.4 in stage 0.0 (TID 1727) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 736] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 111.5 in stage 0.0 (TID 2040, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 719.2 in stage 0.0 (TID 1740) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 737] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 719.3 in stage 0.0 (TID 2041, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 872.0 in stage 0.0 (TID 2042, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 872, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 781.1 in stage 0.0 (TID 1764) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 738] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 702.1 in stage 0.0 (TID 1524) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 739] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 702.2 in stage 0.0 (TID 2043, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 702, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 728.2 in stage 0.0 (TID 1796) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 740] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 728.3 in stage 0.0 (TID 2044, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 736.1 in stage 0.0 (TID 1576) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 741] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 736.2 in stage 0.0 (TID 2045, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 491.3 in stage 0.0 (TID 1637) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 742] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 491.4 in stage 0.0 (TID 2046, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 765.1 in stage 0.0 (TID 1719) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 743] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 765.2 in stage 0.0 (TID 2047, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 765, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 781.2 in stage 0.0 (TID 2048, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 196.4 in stage 0.0 (TID 1610) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 744] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 822.0 in stage 0.0 (TID 1622) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 745] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 822.1 in stage 0.0 (TID 2049, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 822, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 825.0 in stage 0.0 (TID 1628) in 2280 ms on jg1-w-26.c.maclab-ukbb.internal (executor 16) (478/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 196.5 in stage 0.0 (TID 2050, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 807.0 in stage 0.0 (TID 1529) in 2821 ms on jg1-w-29.c.maclab-ukbb.internal (executor 1) (479/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 873.0 in stage 0.0 (TID 2051, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 873, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 241.3 in stage 0.0 (TID 1594) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 746] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 241.4 in stage 0.0 (TID 2052, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 241, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 792.0 in stage 0.0 (TID 1470) in 3136 ms on jg1-w-10.c.maclab-ukbb.internal (executor 185) (480/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 874.0 in stage 0.0 (TID 2053, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 874, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 805.0 in stage 0.0 (TID 1513) in 2926 ms on jg1-w-99.c.maclab-ukbb.internal (executor 30) (481/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 875.0 in stage 0.0 (TID 2054, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 875, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 609.3 in stage 0.0 (TID 1700) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 747] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 609.4 in stage 0.0 (TID 2055, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 593.3 in stage 0.0 (TID 1715) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 748] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 593.4 in stage 0.0 (TID 2056, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 756.1 in stage 0.0 (TID 1674) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 749] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 756.2 in stage 0.0 (TID 2057, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 444.5 in stage 0.0 (TID 1751) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 750] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 444.6 in stage 0.0 (TID 2058, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 438.3 in stage 0.0 (TID 1560) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 751] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 438.4 in stage 0.0 (TID 2059, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 438, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 489.3 in stage 0.0 (TID 1756) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 752] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 489.4 in stage 0.0 (TID 2060, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 128.3 in stage 0.0 (TID 1577) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 753] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 128.4 in stage 0.0 (TID 2061, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 658.2 in stage 0.0 (TID 1750) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 754] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 658.3 in stage 0.0 (TID 2062, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 658, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 800.0 in stage 0.0 (TID 1497) in 3101 ms on jg1-w-95.c.maclab-ukbb.internal (executor 74) (482/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 876.0 in stage 0.0 (TID 2063, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 876, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 809.0 in stage 0.0 (TID 1541) in 2837 ms on jg1-w-47.c.maclab-ukbb.internal (executor 169) (483/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 877.0 in stage 0.0 (TID 2064, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 877, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 513.4 in stage 0.0 (TID 1784) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 755] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 513.5 in stage 0.0 (TID 2065, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 824.0 in stage 0.0 (TID 1625) in 2389 ms on jg1-w-16.c.maclab-ukbb.internal (executor 34) (484/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 878.0 in stage 0.0 (TID 2066, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 878, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 780.1 in stage 0.0 (TID 1726) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 756] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 780.2 in stage 0.0 (TID 2067, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 655.2 in stage 0.0 (TID 1683) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 757] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 655.3 in stage 0.0 (TID 2068, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 655, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 198.5 in stage 0.0 (TID 1760) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 758] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 198.6 in stage 0.0 (TID 2069, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 729.1 in stage 0.0 (TID 1653) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 759] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 729.2 in stage 0.0 (TID 2070, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 729, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 201.5 in stage 0.0 (TID 1725) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 760] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 201.6 in stage 0.0 (TID 2071, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 140.4 in stage 0.0 (TID 1528) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 761] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 140.5 in stage 0.0 (TID 2072, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 521.2 in stage 0.0 (TID 1673) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 762] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 521.3 in stage 0.0 (TID 2073, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 521, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 113.5 in stage 0.0 (TID 1830) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 763] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 113.6 in stage 0.0 (TID 2074, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 162.3 in stage 0.0 (TID 1615) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 764] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 162.4 in stage 0.0 (TID 2075, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 162, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 505.4 in stage 0.0 (TID 1773) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 765] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 505.5 in stage 0.0 (TID 2076, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 433.3 in stage 0.0 (TID 1574) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 766] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 433.4 in stage 0.0 (TID 2077, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 433, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 848.0 in stage 0.0 (TID 1762) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 767] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 848.1 in stage 0.0 (TID 2078, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 848, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 188.5 in stage 0.0 (TID 1698) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 768] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 188.6 in stage 0.0 (TID 2079, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 847.0 in stage 0.0 (TID 1758) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 769] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 847.1 in stage 0.0 (TID 2080, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 847, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 193.5 in stage 0.0 (TID 1634) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 770] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 193.6 in stage 0.0 (TID 2081, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 879.0 in stage 0.0 (TID 2082, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 879, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 418.5 in stage 0.0 (TID 1724) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 771] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 687.1 in stage 0.0 (TID 1487) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 772] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 687.2 in stage 0.0 (TID 2083, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 687, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 415.6 in stage 0.0 (TID 1810) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 773] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 415.7 in stage 0.0 (TID 2084, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 19.4 in stage 0.0 (TID 1626) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 774] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 19.5 in stage 0.0 (TID 2085, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 713.2 in stage 0.0 (TID 1737) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 775] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 713.3 in stage 0.0 (TID 2086, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 707.2 in stage 0.0 (TID 1798) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 776] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 707.3 in stage 0.0 (TID 2087, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 292.4 in stage 0.0 (TID 1585) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 777] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 292.5 in stage 0.0 (TID 2088, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 156.6 in stage 0.0 (TID 1820) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 778] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 156.7 in stage 0.0 (TID 2089, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 691.1 in stage 0.0 (TID 1598) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 779] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 691.2 in stage 0.0 (TID 2090, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 691, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 142.5 in stage 0.0 (TID 1785) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 780] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 142.6 in stage 0.0 (TID 2091, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 833.0 in stage 0.0 (TID 1690) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 781] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 833.1 in stage 0.0 (TID 2092, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 833, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 418.6 in stage 0.0 (TID 2093, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 275.5 in stage 0.0 (TID 1792) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 782] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 439.4 in stage 0.0 (TID 1761) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 783] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 439.5 in stage 0.0 (TID 2094, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 398.2 in stage 0.0 (TID 1713) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 784] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 398.3 in stage 0.0 (TID 2095, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 398, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 725.1 in stage 0.0 (TID 1676) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 785] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 725.2 in stage 0.0 (TID 2096, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 725, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 443.5 in stage 0.0 (TID 1789) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 786] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 443.6 in stage 0.0 (TID 2097, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 199.6 in stage 0.0 (TID 1772) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 787] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 199.7 in stage 0.0 (TID 2098, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 270.3 in stage 0.0 (TID 1569) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 788] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 270.4 in stage 0.0 (TID 2099, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 270, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 828.0 in stage 0.0 (TID 1647) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 789] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 828.1 in stage 0.0 (TID 2100, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 828, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 526.3 in stage 0.0 (TID 1638) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 790] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 526.4 in stage 0.0 (TID 2101, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 526, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 838.0 in stage 0.0 (TID 1734) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 791] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 838.1 in stage 0.0 (TID 2102, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 838, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 275.6 in stage 0.0 (TID 2103, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 242.4 in stage 0.0 (TID 1779) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 792] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 425.4 in stage 0.0 (TID 1667) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 793] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 425.5 in stage 0.0 (TID 2104, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 400.3 in stage 0.0 (TID 1775) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 794] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 400.4 in stage 0.0 (TID 2105, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 242.5 in stage 0.0 (TID 2106, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 541.2 in stage 0.0 (TID 1645) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 795] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 777.1 in stage 0.0 (TID 1747) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 796] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 777.2 in stage 0.0 (TID 2107, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 815.0 in stage 0.0 (TID 1582) in 2810 ms on jg1-w-47.c.maclab-ukbb.internal (executor 169) (485/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 541.3 in stage 0.0 (TID 2108, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 541, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 461.3 in stage 0.0 (TID 1714) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 797] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 461.4 in stage 0.0 (TID 2109, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 461, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 783.1 in stage 0.0 (TID 1801) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 798] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 783.2 in stage 0.0 (TID 2110, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 783, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 169.5 in stage 0.0 (TID 1780) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 799] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 169.6 in stage 0.0 (TID 2111, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 803.1 in stage 0.0 (TID 1786) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 800] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 803.2 in stage 0.0 (TID 2112, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 803, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 141.3 in stage 0.0 (TID 1481) on jg1-w-66.c.maclab-ukbb.internal, executor 159: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 801] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 141.4 in stage 0.0 (TID 2113, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 141, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 426.6 in stage 0.0 (TID 1768) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 802] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 426.7 in stage 0.0 (TID 2114, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 830.0 in stage 0.0 (TID 1661) in 2438 ms on jg1-w-70.c.maclab-ukbb.internal (executor 102) (486/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 880.0 in stage 0.0 (TID 2115, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 880, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 62.4 in stage 0.0 (TID 1605) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 803] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 62.5 in stage 0.0 (TID 2116, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 514.2 in stage 0.0 (TID 1745) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 804] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 514.3 in stage 0.0 (TID 2117, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 514, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 846.0 in stage 0.0 (TID 1757) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 805] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 846.1 in stage 0.0 (TID 2118, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 846, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 346.3 in stage 0.0 (TID 1794) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 806] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 346.4 in stage 0.0 (TID 2119, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 834.0 in stage 0.0 (TID 1699) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 807] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 834.1 in stage 0.0 (TID 2120, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 834, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 842.0 in stage 0.0 (TID 1746) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 808] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 842.1 in stage 0.0 (TID 2121, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 842, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 359.3 in stage 0.0 (TID 1595) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 809] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 359.4 in stage 0.0 (TID 2122, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 727.2 in stage 0.0 (TID 1783) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 810] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 727.3 in stage 0.0 (TID 2123, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 333.5 in stage 0.0 (TID 1807) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 811] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 333.6 in stage 0.0 (TID 2124, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 496.4 in stage 0.0 (TID 1763) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 812] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 496.5 in stage 0.0 (TID 2125, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 215.2 in stage 0.0 (TID 1621) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 813] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 215.3 in stage 0.0 (TID 2126, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 215, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 434.3 in stage 0.0 (TID 1731) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 814] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 434.4 in stage 0.0 (TID 2127, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 434, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 277.4 in stage 0.0 (TID 1659) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 815] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 277.5 in stage 0.0 (TID 2128, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 791.1 in stage 0.0 (TID 1799) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 816] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 791.2 in stage 0.0 (TID 2129, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 791, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 840.0 in stage 0.0 (TID 1739) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 817] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 840.1 in stage 0.0 (TID 2130, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 840, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 327.3 in stage 0.0 (TID 1811) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 818] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 327.4 in stage 0.0 (TID 2131, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 653.2 in stage 0.0 (TID 1741) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 819] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 653.3 in stage 0.0 (TID 2132, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 653, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 414.5 in stage 0.0 (TID 1806) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 820] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 414.6 in stage 0.0 (TID 2133, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 816.0 in stage 0.0 (TID 1584) in 2963 ms on jg1-w-12.c.maclab-ukbb.internal (executor 51) (487/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 881.0 in stage 0.0 (TID 2134, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 881, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 852.0 in stage 0.0 (TID 1782) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 821] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 852.1 in stage 0.0 (TID 2135, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 852, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 106.5 in stage 0.0 (TID 1791) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 822] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 106.6 in stage 0.0 (TID 2136, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 674.0 in stage 0.0 (TID 1048) in 6238 ms on jg1-w-90.c.maclab-ukbb.internal (executor 44) (488/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 882.0 in stage 0.0 (TID 2137, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 882, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 710.2 in stage 0.0 (TID 1877) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 823] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 710.3 in stage 0.0 (TID 2138, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 185.5 in stage 0.0 (TID 1868) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 824] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 185.6 in stage 0.0 (TID 2139, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 758.1 in stage 0.0 (TID 1795) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 825] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 758.2 in stage 0.0 (TID 2140, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 758, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 449.6 in stage 0.0 (TID 1818) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 826] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 449.7 in stage 0.0 (TID 2141, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 177.5 in stage 0.0 (TID 1769) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 827] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 177.6 in stage 0.0 (TID 2142, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 819.0 in stage 0.0 (TID 1601) in 2912 ms on jg1-w-90.c.maclab-ukbb.internal (executor 25) (489/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 883.0 in stage 0.0 (TID 2143, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 883, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 843.0 in stage 0.0 (TID 1748) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 828] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 843.1 in stage 0.0 (TID 2144, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 843, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 836.0 in stage 0.0 (TID 1712) in 2350 ms on jg1-w-64.c.maclab-ukbb.internal (executor 70) (490/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 884.0 in stage 0.0 (TID 2145, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 884, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 164.4 in stage 0.0 (TID 1825) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 829] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 164.5 in stage 0.0 (TID 2146, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 885.0 in stage 0.0 (TID 2147, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 885, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 660.2 in stage 0.0 (TID 1720) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 830] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 282.5 in stage 0.0 (TID 1837) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 831] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 282.6 in stage 0.0 (TID 2148, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 660.3 in stage 0.0 (TID 2149, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 660, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 51.5 in stage 0.0 (TID 1738) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 832] 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 155.4 in stage 0.0 (TID 1767) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 833] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 155.5 in stage 0.0 (TID 2150, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 155, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 335.4 in stage 0.0 (TID 1823) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 834] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 335.5 in stage 0.0 (TID 2151, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 789.1 in stage 0.0 (TID 1835) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 835] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 789.2 in stage 0.0 (TID 2152, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 474.4 in stage 0.0 (TID 1827) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 836] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 474.5 in stage 0.0 (TID 2153, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Finished task 823.0 in stage 0.0 (TID 1624) in 2858 ms on jg1-w-82.c.maclab-ukbb.internal (executor 108) (491/30000) 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 51.6 in stage 0.0 (TID 2154, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 774.1 in stage 0.0 (TID 1749) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 837] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 774.2 in stage 0.0 (TID 2155, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 774, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 192.4 in stage 0.0 (TID 1619) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 838] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 192.5 in stage 0.0 (TID 2156, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 607.2 in stage 0.0 (TID 1695) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 839] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 607.3 in stage 0.0 (TID 2157, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 607, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 212.5 in stage 0.0 (TID 1824) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 840] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 212.6 in stage 0.0 (TID 2158, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 703.1 in stage 0.0 (TID 1675) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 841] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 703.2 in stage 0.0 (TID 2159, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 703, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 794.1 in stage 0.0 (TID 1828) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 842] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 794.2 in stage 0.0 (TID 2160, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 794, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 81.6 in stage 0.0 (TID 1670) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 843] 2020-04-02 15:10:45 TaskSetManager: INFO: Starting task 81.7 in stage 0.0 (TID 2161, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:45 TaskSetManager: INFO: Lost task 423.6 in stage 0.0 (TID 1836) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 844] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 423.7 in stage 0.0 (TID 2162, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 124.4 in stage 0.0 (TID 1759) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 845] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 124.5 in stage 0.0 (TID 2163, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 568.2 in stage 0.0 (TID 1728) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 846] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 568.3 in stage 0.0 (TID 2164, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 855.0 in stage 0.0 (TID 1815) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 847] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 855.1 in stage 0.0 (TID 2165, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 855, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 57.5 in stage 0.0 (TID 1812) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 848] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 57.6 in stage 0.0 (TID 2166, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 459.4 in stage 0.0 (TID 1819) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 849] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 459.5 in stage 0.0 (TID 2167, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 582.2 in stage 0.0 (TID 1800) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 850] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 582.3 in stage 0.0 (TID 2168, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 582, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 52.8 in stage 0.0 (TID 1894) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 851] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 52.9 in stage 0.0 (TID 2169, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 536.3 in stage 0.0 (TID 1662) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 852] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 536.4 in stage 0.0 (TID 2170, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 597.3 in stage 0.0 (TID 1864) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 853] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 597.4 in stage 0.0 (TID 2171, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 764.1 in stage 0.0 (TID 1851) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 854] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 764.2 in stage 0.0 (TID 2172, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 764, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 488.3 in stage 0.0 (TID 1790) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 855] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 488.4 in stage 0.0 (TID 2173, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 584.3 in stage 0.0 (TID 1865) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 856] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 584.4 in stage 0.0 (TID 2174, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 340.3 in stage 0.0 (TID 1778) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 857] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 340.4 in stage 0.0 (TID 2175, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 350.3 in stage 0.0 (TID 1696) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 858] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 350.4 in stage 0.0 (TID 2176, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 350, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Finished task 826.0 in stage 0.0 (TID 1643) in 2881 ms on jg1-w-32.c.maclab-ukbb.internal (executor 57) (492/30000) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 886.0 in stage 0.0 (TID 2177, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 886, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 887.0 in stage 0.0 (TID 2178, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 887, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 354.4 in stage 0.0 (TID 1846) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 859] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 58.7 in stage 0.0 (TID 1875) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 860] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 58.8 in stage 0.0 (TID 2179, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 354.5 in stage 0.0 (TID 2180, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 152.3 in stage 0.0 (TID 1829) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 861] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 390.3 in stage 0.0 (TID 1850) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 862] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 390.4 in stage 0.0 (TID 2181, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 721.2 in stage 0.0 (TID 1859) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 863] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 721.3 in stage 0.0 (TID 2182, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 624.2 in stage 0.0 (TID 1631) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 864] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 624.3 in stage 0.0 (TID 2183, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 624, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 718.2 in stage 0.0 (TID 1856) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 865] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 718.3 in stage 0.0 (TID 2184, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 152.4 in stage 0.0 (TID 2185, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 776.1 in stage 0.0 (TID 1814) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 866] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 667.2 in stage 0.0 (TID 1797) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 867] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 667.3 in stage 0.0 (TID 2186, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 667, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 75.6 in stage 0.0 (TID 1863) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 868] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 75.7 in stage 0.0 (TID 2187, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 331.5 in stage 0.0 (TID 1882) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 869] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 331.6 in stage 0.0 (TID 2188, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 157.7 in stage 0.0 (TID 1922) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 870] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 157.8 in stage 0.0 (TID 2189, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 853.0 in stage 0.0 (TID 1805) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 871] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 853.1 in stage 0.0 (TID 2190, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 853, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 125.4 in stage 0.0 (TID 1822) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 872] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 125.5 in stage 0.0 (TID 2191, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 768.1 in stage 0.0 (TID 1834) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 873] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 768.2 in stage 0.0 (TID 2192, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 768, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 91.6 in stage 0.0 (TID 1913) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 874] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 91.7 in stage 0.0 (TID 2193, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 361.3 in stage 0.0 (TID 1701) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 875] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 361.4 in stage 0.0 (TID 2194, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 361, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 543.3 in stage 0.0 (TID 1884) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 876] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 543.4 in stage 0.0 (TID 2195, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 673.2 in stage 0.0 (TID 1871) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 877] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 673.3 in stage 0.0 (TID 2196, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 776.2 in stage 0.0 (TID 2197, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 776, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 515.3 in stage 0.0 (TID 1809) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 878] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 274.5 in stage 0.0 (TID 1915) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 879] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 274.6 in stage 0.0 (TID 2198, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 690.2 in stage 0.0 (TID 1816) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 880] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 690.3 in stage 0.0 (TID 2199, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 273.3 in stage 0.0 (TID 1732) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 881] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 273.4 in stage 0.0 (TID 2200, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 273, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 814.1 in stage 0.0 (TID 1849) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 882] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 814.2 in stage 0.0 (TID 2201, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 814, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 856.0 in stage 0.0 (TID 1817) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 883] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 856.1 in stage 0.0 (TID 2202, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 856, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 53.7 in stage 0.0 (TID 1729) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 884] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 53.8 in stage 0.0 (TID 2203, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 462.4 in stage 0.0 (TID 1840) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 885] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 462.5 in stage 0.0 (TID 2204, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 462, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 478.4 in stage 0.0 (TID 1880) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 886] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 478.5 in stage 0.0 (TID 2205, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 730.2 in stage 0.0 (TID 1889) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 887] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 730.3 in stage 0.0 (TID 2206, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 730, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 778.1 in stage 0.0 (TID 1844) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 888] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 778.2 in stage 0.0 (TID 2207, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 778, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 515.4 in stage 0.0 (TID 2208, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 515, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 476.4 in stage 0.0 (TID 1855) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 889] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 476.5 in stage 0.0 (TID 2209, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 631.2 in stage 0.0 (TID 1787) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 890] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 218.4 in stage 0.0 (TID 1804) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 891] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 218.5 in stage 0.0 (TID 2210, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 358.3 in stage 0.0 (TID 1733) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 892] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 358.4 in stage 0.0 (TID 2211, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 358, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 542.2 in stage 0.0 (TID 1599) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 893] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 542.3 in stage 0.0 (TID 2212, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 542, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Finished task 503.0 in stage 0.0 (TID 619) in 9887 ms on jg1-w-37.c.maclab-ukbb.internal (executor 12) (493/30000) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 631.3 in stage 0.0 (TID 2213, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 631, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 588.3 in stage 0.0 (TID 1867) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 894] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 588.4 in stage 0.0 (TID 2214, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 588, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 769.2 in stage 0.0 (TID 1904) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 895] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 769.3 in stage 0.0 (TID 2215, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 775.1 in stage 0.0 (TID 1813) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 896] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 775.2 in stage 0.0 (TID 2216, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 775, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 408.7 in stage 0.0 (TID 1776) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 897] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 408.8 in stage 0.0 (TID 2217, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 281.5 in stage 0.0 (TID 1918) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 898] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 281.6 in stage 0.0 (TID 2218, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 1.9 in stage 0.0 (TID 1895) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 899] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 1.10 in stage 0.0 (TID 2219, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 614.1 in stage 0.0 (TID 1833) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 900] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 614.2 in stage 0.0 (TID 2220, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 502.4 in stage 0.0 (TID 1861) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 901] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 502.5 in stage 0.0 (TID 2221, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 680.3 in stage 0.0 (TID 1931) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 902] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 680.4 in stage 0.0 (TID 2222, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 493.3 in stage 0.0 (TID 1870) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 903] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 493.4 in stage 0.0 (TID 2223, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 601.3 in stage 0.0 (TID 1891) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 904] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 601.4 in stage 0.0 (TID 2224, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 355.5 in stage 0.0 (TID 1916) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 905] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 355.6 in stage 0.0 (TID 2225, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 888.0 in stage 0.0 (TID 2226, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 888, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 598.4 in stage 0.0 (TID 1914) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 906] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 518.4 in stage 0.0 (TID 1929) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 907] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 518.5 in stage 0.0 (TID 2227, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 679.2 in stage 0.0 (TID 1838) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 908] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 679.3 in stage 0.0 (TID 2228, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 679, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 709.2 in stage 0.0 (TID 1852) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 909] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 709.3 in stage 0.0 (TID 2229, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Finished task 831.0 in stage 0.0 (TID 1678) in 2912 ms on jg1-w-78.c.maclab-ukbb.internal (executor 5) (494/30000) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 598.5 in stage 0.0 (TID 2230, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 225.5 in stage 0.0 (TID 1743) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 910] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 225.6 in stage 0.0 (TID 2231, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 889.0 in stage 0.0 (TID 2232, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 889, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 167.6 in stage 0.0 (TID 1965) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 911] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 399.8 in stage 0.0 (TID 1899) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 912] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 399.9 in stage 0.0 (TID 2233, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Finished task 813.0 in stage 0.0 (TID 1554) in 3573 ms on jg1-w-40.c.maclab-ukbb.internal (executor 72) (495/30000) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 167.7 in stage 0.0 (TID 2234, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 392.4 in stage 0.0 (TID 1951) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 913] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 392.5 in stage 0.0 (TID 2235, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 345.4 in stage 0.0 (TID 1942) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 914] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 345.5 in stage 0.0 (TID 2236, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 507.3 in stage 0.0 (TID 1873) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 915] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 507.4 in stage 0.0 (TID 2237, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 197.4 in stage 0.0 (TID 1641) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 916] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 197.5 in stage 0.0 (TID 2238, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 504.5 in stage 0.0 (TID 1969) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 917] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 504.6 in stage 0.0 (TID 2239, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 80.4 in stage 0.0 (TID 1788) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 918] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 80.5 in stage 0.0 (TID 2240, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 80, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 608.3 in stage 0.0 (TID 1938) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 919] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 608.4 in stage 0.0 (TID 2241, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 742.2 in stage 0.0 (TID 1857) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 920] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 742.3 in stage 0.0 (TID 2242, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 890.0 in stage 0.0 (TID 2243, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 890, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 330.2 in stage 0.0 (TID 1908) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 921] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 422.4 in stage 0.0 (TID 1703) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 922] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 422.5 in stage 0.0 (TID 2244, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 107.4 in stage 0.0 (TID 1730) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 923] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 107.5 in stage 0.0 (TID 2245, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 330.3 in stage 0.0 (TID 2246, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 330, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 194.6 in stage 0.0 (TID 1839) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 924] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 544.4 in stage 0.0 (TID 1831) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 925] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 544.5 in stage 0.0 (TID 2247, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 428.5 in stage 0.0 (TID 1888) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 926] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 428.6 in stage 0.0 (TID 2248, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 50.5 in stage 0.0 (TID 1925) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 927] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 50.6 in stage 0.0 (TID 2249, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 195.6 in stage 0.0 (TID 1945) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 928] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 195.7 in stage 0.0 (TID 2250, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Finished task 857.0 in stage 0.0 (TID 1832) in 2100 ms on jg1-w-18.c.maclab-ukbb.internal (executor 197) (496/30000) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 194.7 in stage 0.0 (TID 2251, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 424.3 in stage 0.0 (TID 1418) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 929] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 424.4 in stage 0.0 (TID 2252, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 424, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 891.0 in stage 0.0 (TID 2253, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 891, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 861.0 in stage 0.0 (TID 1887) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 930] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 591.2 in stage 0.0 (TID 1876) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 931] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 591.3 in stage 0.0 (TID 2254, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 591, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Finished task 827.0 in stage 0.0 (TID 1646) in 3186 ms on jg1-w-99.c.maclab-ukbb.internal (executor 49) (497/30000) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 861.1 in stage 0.0 (TID 2255, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 861, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 634.2 in stage 0.0 (TID 1803) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 932] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 634.3 in stage 0.0 (TID 2256, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 634, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 517.4 in stage 0.0 (TID 1841) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 933] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 517.5 in stage 0.0 (TID 2257, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 693.1 in stage 0.0 (TID 1755) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 934] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 693.2 in stage 0.0 (TID 2258, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 693, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 612.2 in stage 0.0 (TID 1901) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 935] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 612.3 in stage 0.0 (TID 2259, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 612, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 475.5 in stage 0.0 (TID 1912) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 936] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 475.6 in stage 0.0 (TID 2260, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 224.4 in stage 0.0 (TID 1878) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 937] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 224.5 in stage 0.0 (TID 2261, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 326.3 in stage 0.0 (TID 1843) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 938] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 326.4 in stage 0.0 (TID 2262, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 326, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Finished task 851.0 in stage 0.0 (TID 1781) in 2473 ms on jg1-w-9.c.maclab-ukbb.internal (executor 77) (498/30000) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 892.0 in stage 0.0 (TID 2263, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 892, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 683.2 in stage 0.0 (TID 1940) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 939] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 683.3 in stage 0.0 (TID 2264, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 683, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 487.5 in stage 0.0 (TID 1970) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 940] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 487.6 in stage 0.0 (TID 2265, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 175.5 in stage 0.0 (TID 1962) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 941] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 175.6 in stage 0.0 (TID 2266, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 173.4 in stage 0.0 (TID 1847) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 942] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 173.5 in stage 0.0 (TID 2267, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 441.5 in stage 0.0 (TID 1923) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 943] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 441.6 in stage 0.0 (TID 2268, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 744.2 in stage 0.0 (TID 1900) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 944] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 744.3 in stage 0.0 (TID 2269, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 893.0 in stage 0.0 (TID 2270, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 893, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 220.6 in stage 0.0 (TID 2023) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 945] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 698.2 in stage 0.0 (TID 1869) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 946] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 698.3 in stage 0.0 (TID 2271, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 698, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Finished task 844.0 in stage 0.0 (TID 1752) in 2678 ms on jg1-w-65.c.maclab-ukbb.internal (executor 7) (499/30000) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 220.7 in stage 0.0 (TID 2272, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 625.3 in stage 0.0 (TID 1928) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 947] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 625.4 in stage 0.0 (TID 2273, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 347.4 in stage 0.0 (TID 2003) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 948] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 347.5 in stage 0.0 (TID 2274, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Finished task 841.0 in stage 0.0 (TID 1744) in 2741 ms on jg1-w-25.c.maclab-ukbb.internal (executor 42) (500/30000) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 894.0 in stage 0.0 (TID 2275, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 894, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 460.4 in stage 0.0 (TID 1936) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 949] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 460.5 in stage 0.0 (TID 2276, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 553.1 in stage 0.0 (TID 1186) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 950] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 553.2 in stage 0.0 (TID 2277, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 553, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 351.5 in stage 0.0 (TID 1935) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 951] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 351.6 in stage 0.0 (TID 2278, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 699.2 in stage 0.0 (TID 1770) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 952] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 699.3 in stage 0.0 (TID 2279, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 165.5 in stage 0.0 (TID 1910) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 953] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 165.6 in stage 0.0 (TID 2280, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 310.5 in stage 0.0 (TID 1911) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 954] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 310.6 in stage 0.0 (TID 2281, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 299.3 in stage 0.0 (TID 1872) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 955] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 299.4 in stage 0.0 (TID 2282, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 299, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 154.10 in stage 0.0 (TID 1842) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 956] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 154.11 in stage 0.0 (TID 2283, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 627.3 in stage 0.0 (TID 1893) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 957] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 627.4 in stage 0.0 (TID 2284, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 786.1 in stage 0.0 (TID 1890) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 958] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 786.2 in stage 0.0 (TID 2285, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 786, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 31.6 in stage 0.0 (TID 1821) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 959] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 31.7 in stage 0.0 (TID 2286, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 761.2 in stage 0.0 (TID 1905) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 960] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 761.3 in stage 0.0 (TID 2287, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 761, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 762.2 in stage 0.0 (TID 1971) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 961] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 762.3 in stage 0.0 (TID 2288, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 290.3 in stage 0.0 (TID 1854) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 962] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 290.4 in stage 0.0 (TID 2289, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 290, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 516.3 in stage 0.0 (TID 1943) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 963] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 516.4 in stage 0.0 (TID 2290, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 895.0 in stage 0.0 (TID 2291, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 895, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 334.4 in stage 0.0 (TID 1986) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 964] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 143.5 in stage 0.0 (TID 1886) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 965] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 143.6 in stage 0.0 (TID 2292, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 435.5 in stage 0.0 (TID 1994) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 966] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 435.6 in stage 0.0 (TID 2293, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 372.3 in stage 0.0 (TID 1793) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 967] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 372.4 in stage 0.0 (TID 2294, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 704.2 in stage 0.0 (TID 1932) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 968] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 704.3 in stage 0.0 (TID 2295, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 704, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 520.3 in stage 0.0 (TID 1845) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 969] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 520.4 in stage 0.0 (TID 2296, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 759.2 in stage 0.0 (TID 1993) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 970] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 759.3 in stage 0.0 (TID 2297, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 759, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 506.4 in stage 0.0 (TID 1956) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 971] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 506.5 in stage 0.0 (TID 2298, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 592.3 in stage 0.0 (TID 1976) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 972] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 592.4 in stage 0.0 (TID 2299, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 334.5 in stage 0.0 (TID 2300, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 401.3 in stage 0.0 (TID 1944) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 973] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 160.4 in stage 0.0 (TID 1860) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 974] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 160.5 in stage 0.0 (TID 2301, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 804.0 in stage 0.0 (TID 1510) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 975] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 804.1 in stage 0.0 (TID 2302, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 804, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 56.5 in stage 0.0 (TID 1826) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 976] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 56.6 in stage 0.0 (TID 2303, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 348.4 in stage 0.0 (TID 1941) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 977] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 348.5 in stage 0.0 (TID 2304, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 209.5 in stage 0.0 (TID 1926) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 978] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 209.6 in stage 0.0 (TID 2305, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 280.4 in stage 0.0 (TID 1939) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 979] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 280.5 in stage 0.0 (TID 2306, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 715.2 in stage 0.0 (TID 1934) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 980] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 715.3 in stage 0.0 (TID 2307, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 715, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 39.6 in stage 0.0 (TID 1897) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 981] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 39.7 in stage 0.0 (TID 2308, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 49.6 in stage 0.0 (TID 1874) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 982] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 49.7 in stage 0.0 (TID 2309, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 654.2 in stage 0.0 (TID 1927) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 983] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 654.3 in stage 0.0 (TID 2310, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 654, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 829.1 in stage 0.0 (TID 1950) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 984] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 829.2 in stage 0.0 (TID 2311, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 829, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 799.1 in stage 0.0 (TID 1954) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 985] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 799.2 in stage 0.0 (TID 2312, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 799, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 186.5 in stage 0.0 (TID 2000) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 986] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 186.6 in stage 0.0 (TID 2313, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 401.4 in stage 0.0 (TID 2314, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 151.6 in stage 0.0 (TID 2021) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 987] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 454.3 in stage 0.0 (TID 1866) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 988] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 454.4 in stage 0.0 (TID 2315, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 454, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 360.4 in stage 0.0 (TID 1952) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 989] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 360.5 in stage 0.0 (TID 2316, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 746.2 in stage 0.0 (TID 1982) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 990] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 746.3 in stage 0.0 (TID 2317, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 790.1 in stage 0.0 (TID 1802) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 991] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 790.2 in stage 0.0 (TID 2318, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 790, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 818.1 in stage 0.0 (TID 2011) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 992] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 818.2 in stage 0.0 (TID 2319, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 818, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 519.4 in stage 0.0 (TID 1963) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 993] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 519.5 in stage 0.0 (TID 2320, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 596.3 in stage 0.0 (TID 1972) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 994] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 596.4 in stage 0.0 (TID 2321, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 391.2 in stage 0.0 (TID 1906) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 995] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 391.3 in stage 0.0 (TID 2322, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 391, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 535.4 in stage 0.0 (TID 1933) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 996] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 535.5 in stage 0.0 (TID 2323, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 605.2 in stage 0.0 (TID 1672) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 997] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 605.3 in stage 0.0 (TID 2324, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 605, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 511.4 in stage 0.0 (TID 1902) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 998] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 511.5 in stage 0.0 (TID 2325, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 166.5 in stage 0.0 (TID 1960) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 999] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 166.6 in stage 0.0 (TID 2326, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 806.1 in stage 0.0 (TID 1879) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1000] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 806.2 in stage 0.0 (TID 2327, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 806, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 158.6 in stage 0.0 (TID 2032) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1001] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 158.7 in stage 0.0 (TID 2328, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 227.4 in stage 0.0 (TID 1917) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1002] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 227.5 in stage 0.0 (TID 2329, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 227, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 206.6 in stage 0.0 (TID 1995) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1003] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 206.7 in stage 0.0 (TID 2330, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 151.7 in stage 0.0 (TID 2331, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 170.6 in stage 0.0 (TID 1967) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1004] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 670.1 in stage 0.0 (TID 1436) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1005] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 670.2 in stage 0.0 (TID 2332, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 670, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 407.6 in stage 0.0 (TID 1858) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1006] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 407.7 in stage 0.0 (TID 2333, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 63.7 in stage 0.0 (TID 2017) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1007] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 63.8 in stage 0.0 (TID 2334, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 767.2 in stage 0.0 (TID 1989) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1008] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 767.3 in stage 0.0 (TID 2335, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 767, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 594.3 in stage 0.0 (TID 1921) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1009] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 594.4 in stage 0.0 (TID 2336, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 109.5 in stage 0.0 (TID 1983) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1010] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 109.6 in stage 0.0 (TID 2337, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 187.6 in stage 0.0 (TID 2018) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1011] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 187.7 in stage 0.0 (TID 2338, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 247.5 in stage 0.0 (TID 1898) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1012] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 247.6 in stage 0.0 (TID 2339, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 486.4 in stage 0.0 (TID 2028) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1013] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 486.5 in stage 0.0 (TID 2340, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 276.5 in stage 0.0 (TID 1957) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1014] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 276.6 in stage 0.0 (TID 2341, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 628.3 in stage 0.0 (TID 2026) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1015] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 628.4 in stage 0.0 (TID 2342, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 202.6 in stage 0.0 (TID 2037) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1016] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 202.7 in stage 0.0 (TID 2343, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 0.10 in stage 0.0 (TID 1881) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1017] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 0.11 in stage 0.0 (TID 2344, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 554.4 in stage 0.0 (TID 2010) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1018] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 554.5 in stage 0.0 (TID 2345, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 191.5 in stage 0.0 (TID 1992) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1019] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 191.6 in stage 0.0 (TID 2346, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 303.5 in stage 0.0 (TID 2031) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1020] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 303.6 in stage 0.0 (TID 2347, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 121.5 in stage 0.0 (TID 1777) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1021] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 121.6 in stage 0.0 (TID 2348, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 198.6 in stage 0.0 (TID 2069) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1022] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 198.7 in stage 0.0 (TID 2349, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 644.3 in stage 0.0 (TID 1981) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1023] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 644.4 in stage 0.0 (TID 2350, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 849.0 in stage 0.0 (TID 1771) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1024] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 849.1 in stage 0.0 (TID 2351, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 849, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 796.1 in stage 0.0 (TID 1961) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1025] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 796.2 in stage 0.0 (TID 2352, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 796, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 170.7 in stage 0.0 (TID 2353, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 719.3 in stage 0.0 (TID 2041) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1026] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 719.4 in stage 0.0 (TID 2354, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 668.2 in stage 0.0 (TID 1987) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1027] 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 513.5 in stage 0.0 (TID 2065) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1028] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 513.6 in stage 0.0 (TID 2355, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 779.1 in stage 0.0 (TID 2001) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1029] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 779.2 in stage 0.0 (TID 2356, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 779, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 64.5 in stage 0.0 (TID 1896) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1030] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 64.6 in stage 0.0 (TID 2357, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 839.0 in stage 0.0 (TID 1735) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1031] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 839.1 in stage 0.0 (TID 2358, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 839, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 20.7 in stage 0.0 (TID 2007) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1032] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 20.8 in stage 0.0 (TID 2359, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 427.5 in stage 0.0 (TID 2006) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1033] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 427.6 in stage 0.0 (TID 2360, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 495.4 in stage 0.0 (TID 2030) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1034] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 495.5 in stage 0.0 (TID 2361, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 572.2 in stage 0.0 (TID 1974) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1035] 2020-04-02 15:10:46 TaskSetManager: INFO: Starting task 572.3 in stage 0.0 (TID 2362, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 572, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:46 TaskSetManager: INFO: Lost task 406.6 in stage 0.0 (TID 2025) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1036] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 406.7 in stage 0.0 (TID 2363, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 115.5 in stage 0.0 (TID 2019) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1037] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 115.6 in stage 0.0 (TID 2364, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 115, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 668.3 in stage 0.0 (TID 2365, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 668, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 193.6 in stage 0.0 (TID 2081) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1038] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 821.1 in stage 0.0 (TID 2035) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1039] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 821.2 in stage 0.0 (TID 2366, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 497.4 in stage 0.0 (TID 2005) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1040] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 497.5 in stage 0.0 (TID 2367, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 275.6 in stage 0.0 (TID 2103) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1041] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 275.7 in stage 0.0 (TID 2368, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 780.2 in stage 0.0 (TID 2067) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1042] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 780.3 in stage 0.0 (TID 2369, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 257.6 in stage 0.0 (TID 2024) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1043] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 257.7 in stage 0.0 (TID 2370, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 832.0 in stage 0.0 (TID 1687) in 3619 ms on jg1-w-3.c.maclab-ukbb.internal (executor 125) (501/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 193.7 in stage 0.0 (TID 2371, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 289.5 in stage 0.0 (TID 1920) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1044] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 289.6 in stage 0.0 (TID 2372, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 812.1 in stage 0.0 (TID 1984) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1045] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 812.2 in stage 0.0 (TID 2373, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 812, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 835.0 in stage 0.0 (TID 1702) in 3566 ms on jg1-w-0.c.maclab-ukbb.internal (executor 112) (502/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 896.0 in stage 0.0 (TID 2374, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 896, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 585.3 in stage 0.0 (TID 1959) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1046] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 585.4 in stage 0.0 (TID 2375, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 585, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 153.5 in stage 0.0 (TID 1979) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1047] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 153.6 in stage 0.0 (TID 2376, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 142.6 in stage 0.0 (TID 2091) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1048] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 142.7 in stage 0.0 (TID 2377, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 113.6 in stage 0.0 (TID 2074) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1049] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 113.7 in stage 0.0 (TID 2378, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 828.1 in stage 0.0 (TID 2100) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1050] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 828.2 in stage 0.0 (TID 2379, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 828, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 366.4 in stage 0.0 (TID 2033) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1051] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 366.5 in stage 0.0 (TID 2380, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 201.6 in stage 0.0 (TID 2071) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1052] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 201.7 in stage 0.0 (TID 2381, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 862.0 in stage 0.0 (TID 1909) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1053] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 862.1 in stage 0.0 (TID 2382, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 862, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 658.3 in stage 0.0 (TID 2062) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1054] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 658.4 in stage 0.0 (TID 2383, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 658, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 781.2 in stage 0.0 (TID 2048) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1055] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 781.3 in stage 0.0 (TID 2384, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 496.5 in stage 0.0 (TID 2125) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1056] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 496.6 in stage 0.0 (TID 2385, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 130.4 in stage 0.0 (TID 2009) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1057] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 130.5 in stage 0.0 (TID 2386, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 130, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 169.6 in stage 0.0 (TID 2111) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1058] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 169.7 in stage 0.0 (TID 2387, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 793.1 in stage 0.0 (TID 2002) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1059] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 793.2 in stage 0.0 (TID 2388, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 793, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 288.5 in stage 0.0 (TID 2036) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1060] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 288.6 in stage 0.0 (TID 2389, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 858.0 in stage 0.0 (TID 1848) in 2794 ms on jg1-w-6.c.maclab-ukbb.internal (executor 176) (503/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 897.0 in stage 0.0 (TID 2390, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 897, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 604.3 in stage 0.0 (TID 1985) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1061] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 604.4 in stage 0.0 (TID 2391, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 604, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 409.6 in stage 0.0 (TID 1903) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1062] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 409.7 in stage 0.0 (TID 2392, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 578.3 in stage 0.0 (TID 1999) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1063] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 578.4 in stage 0.0 (TID 2393, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 578, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 41.5 in stage 0.0 (TID 1892) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1064] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 41.6 in stage 0.0 (TID 2394, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 817.1 in stage 0.0 (TID 1991) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1065] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 817.2 in stage 0.0 (TID 2395, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 817, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 728.3 in stage 0.0 (TID 2044) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1066] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 728.4 in stage 0.0 (TID 2396, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 248.5 in stage 0.0 (TID 2016) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1067] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 248.6 in stage 0.0 (TID 2397, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 620.2 in stage 0.0 (TID 1949) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1068] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 620.3 in stage 0.0 (TID 2398, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 620, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 442.5 in stage 0.0 (TID 2008) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1069] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 442.6 in stage 0.0 (TID 2399, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 491.4 in stage 0.0 (TID 2046) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1070] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 491.5 in stage 0.0 (TID 2400, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 837.0 in stage 0.0 (TID 1716) in 3669 ms on jg1-w-43.c.maclab-ukbb.internal (executor 150) (504/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 898.0 in stage 0.0 (TID 2401, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 898, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 716.2 in stage 0.0 (TID 2015) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1071] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 716.3 in stage 0.0 (TID 2402, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 716, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 808.1 in stage 0.0 (TID 1919) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1072] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 808.2 in stage 0.0 (TID 2403, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 808, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 47.7 in stage 0.0 (TID 1947) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1073] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 47.8 in stage 0.0 (TID 2404, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 346.4 in stage 0.0 (TID 2119) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1074] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 346.5 in stage 0.0 (TID 2405, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 655.3 in stage 0.0 (TID 2068) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1075] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 655.4 in stage 0.0 (TID 2406, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 655, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 444.6 in stage 0.0 (TID 2058) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1076] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 444.7 in stage 0.0 (TID 2407, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 791.2 in stage 0.0 (TID 2129) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1077] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 791.3 in stage 0.0 (TID 2408, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 791, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 425.5 in stage 0.0 (TID 2104) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1078] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 425.6 in stage 0.0 (TID 2409, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 847.1 in stage 0.0 (TID 2080) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1079] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 847.2 in stage 0.0 (TID 2410, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 847, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 721.3 in stage 0.0 (TID 2182) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1080] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 721.4 in stage 0.0 (TID 2411, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 899.0 in stage 0.0 (TID 2412, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 899, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 111.5 in stage 0.0 (TID 2040) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1081] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 508.3 in stage 0.0 (TID 1885) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1082] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 508.4 in stage 0.0 (TID 2413, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 508, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 784.0 in stage 0.0 (TID 1439) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1083] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 784.1 in stage 0.0 (TID 2414, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 784, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 492.4 in stage 0.0 (TID 1978) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1084] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 492.5 in stage 0.0 (TID 2415, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 205.6 in stage 0.0 (TID 2029) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1085] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 205.7 in stage 0.0 (TID 2416, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 697.2 in stage 0.0 (TID 1862) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1086] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 697.3 in stage 0.0 (TID 2417, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 697, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 196.5 in stage 0.0 (TID 2050) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1087] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 196.6 in stage 0.0 (TID 2418, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 111.6 in stage 0.0 (TID 2419, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 368.3 in stage 0.0 (TID 1990) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1088] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 854.0 in stage 0.0 (TID 1808) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1089] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 854.1 in stage 0.0 (TID 2420, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 854, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 199.7 in stage 0.0 (TID 2098) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1090] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 199.8 in stage 0.0 (TID 2421, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 521.3 in stage 0.0 (TID 2073) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1091] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 521.4 in stage 0.0 (TID 2422, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 521, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 838.1 in stage 0.0 (TID 2102) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1092] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 838.2 in stage 0.0 (TID 2423, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 838, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 593.4 in stage 0.0 (TID 2056) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1093] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 593.5 in stage 0.0 (TID 2424, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 449.7 in stage 0.0 (TID 2141) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1094] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 449.8 in stage 0.0 (TID 2425, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 368.4 in stage 0.0 (TID 2426, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 368, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 710.3 in stage 0.0 (TID 2138) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1095] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 128.4 in stage 0.0 (TID 2061) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1096] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 128.5 in stage 0.0 (TID 2427, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 282.6 in stage 0.0 (TID 2148) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1097] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 282.7 in stage 0.0 (TID 2428, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 415.7 in stage 0.0 (TID 2084) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1098] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 415.8 in stage 0.0 (TID 2429, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 789.2 in stage 0.0 (TID 2152) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1099] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 789.3 in stage 0.0 (TID 2430, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 439.5 in stage 0.0 (TID 2094) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1100] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 439.6 in stage 0.0 (TID 2431, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 848.1 in stage 0.0 (TID 2078) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1101] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 848.2 in stage 0.0 (TID 2432, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 848, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 539.3 in stage 0.0 (TID 1924) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1102] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 539.4 in stage 0.0 (TID 2433, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 539, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 489.4 in stage 0.0 (TID 2060) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1103] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 489.5 in stage 0.0 (TID 2434, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 136.5 in stage 0.0 (TID 2022) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1104] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 136.6 in stage 0.0 (TID 2435, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 694.3 in stage 0.0 (TID 1996) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1105] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 694.4 in stage 0.0 (TID 2436, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 707.3 in stage 0.0 (TID 2087) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1106] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 707.4 in stage 0.0 (TID 2437, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 840.1 in stage 0.0 (TID 2130) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1107] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 840.2 in stage 0.0 (TID 2438, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 840, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 850.0 in stage 0.0 (TID 1774) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1108] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 850.1 in stage 0.0 (TID 2439, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 850, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 702.2 in stage 0.0 (TID 2043) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1109] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 702.3 in stage 0.0 (TID 2440, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 702, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 443.6 in stage 0.0 (TID 2097) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1110] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 443.7 in stage 0.0 (TID 2441, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 756.2 in stage 0.0 (TID 2057) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1111] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 756.3 in stage 0.0 (TID 2442, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 156.7 in stage 0.0 (TID 2089) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1112] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 156.8 in stage 0.0 (TID 2443, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 500.4 in stage 0.0 (TID 2004) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1113] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 500.5 in stage 0.0 (TID 2444, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 783.2 in stage 0.0 (TID 2110) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1114] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 783.3 in stage 0.0 (TID 2445, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 783, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 855.1 in stage 0.0 (TID 2165) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1115] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 855.2 in stage 0.0 (TID 2446, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 855, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 794.2 in stage 0.0 (TID 2160) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1116] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 794.3 in stage 0.0 (TID 2447, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 794, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 880.0 in stage 0.0 (TID 2115) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1117] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 880.1 in stage 0.0 (TID 2448, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 880, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 710.4 in stage 0.0 (TID 2449, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 842.1 in stage 0.0 (TID 2121) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1118] 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 866.0 in stage 0.0 (TID 1966) in 2503 ms on jg1-w-5.c.maclab-ukbb.internal (executor 119) (505/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 842.2 in stage 0.0 (TID 2450, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 842, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 900.0 in stage 0.0 (TID 2451, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 900, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 681.2 in stage 0.0 (TID 2027) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1119] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 681.3 in stage 0.0 (TID 2452, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 681, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 901.0 in stage 0.0 (TID 2453, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 901, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 27.6 in stage 0.0 (TID 1977) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1120] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 27.7 in stage 0.0 (TID 2454, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 695.0 in stage 0.0 (TID 1106) in 7532 ms on jg1-w-67.c.maclab-ukbb.internal (executor 110) (506/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 902.0 in stage 0.0 (TID 2455, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 902, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 162.4 in stage 0.0 (TID 2075) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1121] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 162.5 in stage 0.0 (TID 2456, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 162, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 711.2 in stage 0.0 (TID 1946) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1122] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 711.3 in stage 0.0 (TID 2457, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 711, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 657.2 in stage 0.0 (TID 2020) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1123] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 246.5 in stage 0.0 (TID 1948) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1124] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 246.6 in stage 0.0 (TID 2458, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 277.5 in stage 0.0 (TID 2128) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1125] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 405.4 in stage 0.0 (TID 1766) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1126] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 405.5 in stage 0.0 (TID 2459, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 405, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 834.1 in stage 0.0 (TID 2120) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1127] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 834.2 in stage 0.0 (TID 2460, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 834, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 532.3 in stage 0.0 (TID 1998) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1128] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 532.4 in stage 0.0 (TID 2461, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 532, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 758.2 in stage 0.0 (TID 2140) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1129] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 758.3 in stage 0.0 (TID 2462, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 758, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 736.2 in stage 0.0 (TID 2045) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1130] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 736.3 in stage 0.0 (TID 2463, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 75.7 in stage 0.0 (TID 2187) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1131] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 75.8 in stage 0.0 (TID 2464, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 327.4 in stage 0.0 (TID 2131) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1132] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 327.5 in stage 0.0 (TID 2465, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 673.3 in stage 0.0 (TID 2196) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1133] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 673.4 in stage 0.0 (TID 2466, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 277.6 in stage 0.0 (TID 2467, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 729.2 in stage 0.0 (TID 2070) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1134] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 609.4 in stage 0.0 (TID 2055) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1135] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 609.5 in stage 0.0 (TID 2468, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 91.7 in stage 0.0 (TID 2193) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1136] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 91.8 in stage 0.0 (TID 2469, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 355.6 in stage 0.0 (TID 2225) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1137] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 355.7 in stage 0.0 (TID 2470, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 567.3 in stage 0.0 (TID 2034) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1138] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 567.4 in stage 0.0 (TID 2471, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 567, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 729.3 in stage 0.0 (TID 2472, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 729, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 660.3 in stage 0.0 (TID 2149) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1139] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 583.3 in stage 0.0 (TID 1968) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1140] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 583.4 in stage 0.0 (TID 2473, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 583, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 660.4 in stage 0.0 (TID 2474, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 660, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 777.2 in stage 0.0 (TID 2107) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1141] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 713.3 in stage 0.0 (TID 2086) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1142] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 713.4 in stage 0.0 (TID 2475, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 872.0 in stage 0.0 (TID 2042) in 2243 ms on jg1-w-27.c.maclab-ukbb.internal (executor 175) (507/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 777.3 in stage 0.0 (TID 2476, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 657.3 in stage 0.0 (TID 2477, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 657, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 718.3 in stage 0.0 (TID 2184) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1143] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 152.4 in stage 0.0 (TID 2185) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1144] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 152.5 in stage 0.0 (TID 2478, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 140.5 in stage 0.0 (TID 2072) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1145] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 140.6 in stage 0.0 (TID 2479, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 764.2 in stage 0.0 (TID 2172) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1146] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 764.3 in stage 0.0 (TID 2480, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 764, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 392.5 in stage 0.0 (TID 2235) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1147] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 392.6 in stage 0.0 (TID 2481, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 864.0 in stage 0.0 (TID 1955) in 2641 ms on jg1-w-13.c.maclab-ukbb.internal (executor 88) (508/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 718.4 in stage 0.0 (TID 2482, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 157.8 in stage 0.0 (TID 2189) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1148] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 157.9 in stage 0.0 (TID 2483, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 903.0 in stage 0.0 (TID 2484, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 903, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 52.9 in stage 0.0 (TID 2169) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1149] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 462.5 in stage 0.0 (TID 2204) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1150] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 462.6 in stage 0.0 (TID 2485, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 462, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 846.1 in stage 0.0 (TID 2118) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1151] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 846.2 in stage 0.0 (TID 2486, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 846, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 833.1 in stage 0.0 (TID 2092) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1152] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 833.2 in stage 0.0 (TID 2487, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 833, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 19.5 in stage 0.0 (TID 2085) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1153] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 19.6 in stage 0.0 (TID 2488, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 354.5 in stage 0.0 (TID 2180) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1154] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 354.6 in stage 0.0 (TID 2489, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 438.4 in stage 0.0 (TID 2059) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1155] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 438.5 in stage 0.0 (TID 2490, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 438, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 185.6 in stage 0.0 (TID 2139) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1156] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 185.7 in stage 0.0 (TID 2491, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 426.7 in stage 0.0 (TID 2114) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1157] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 426.8 in stage 0.0 (TID 2492, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 730.3 in stage 0.0 (TID 2206) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1158] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 730.4 in stage 0.0 (TID 2493, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 730, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 423.7 in stage 0.0 (TID 2162) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1159] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 423.8 in stage 0.0 (TID 2494, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 195.7 in stage 0.0 (TID 2250) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1160] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 195.8 in stage 0.0 (TID 2495, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 765.2 in stage 0.0 (TID 2047) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1161] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 765.3 in stage 0.0 (TID 2496, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 765, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 727.3 in stage 0.0 (TID 2123) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1162] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 727.4 in stage 0.0 (TID 2497, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 852.1 in stage 0.0 (TID 2135) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1163] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 852.2 in stage 0.0 (TID 2498, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 852, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 505.5 in stage 0.0 (TID 2076) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1164] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 505.6 in stage 0.0 (TID 2499, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 514.3 in stage 0.0 (TID 2117) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1165] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 514.4 in stage 0.0 (TID 2500, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 514, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 853.1 in stage 0.0 (TID 2190) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1166] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 853.2 in stage 0.0 (TID 2501, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 853, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 820.1 in stage 0.0 (TID 1937) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1167] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 820.2 in stage 0.0 (TID 2502, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 820, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 742.3 in stage 0.0 (TID 2242) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1168] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 742.4 in stage 0.0 (TID 2503, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 597.4 in stage 0.0 (TID 2171) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1169] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 597.5 in stage 0.0 (TID 2504, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 81.7 in stage 0.0 (TID 2161) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1170] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 81.8 in stage 0.0 (TID 2505, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 309.4 in stage 0.0 (TID 1975) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1171] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 309.5 in stage 0.0 (TID 2506, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 309, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 568.3 in stage 0.0 (TID 2164) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1172] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 568.4 in stage 0.0 (TID 2507, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 52.10 in stage 0.0 (TID 2508, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 281.6 in stage 0.0 (TID 2218) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1173] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 653.3 in stage 0.0 (TID 2132) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1174] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 653.4 in stage 0.0 (TID 2509, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 653, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 335.5 in stage 0.0 (TID 2151) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1175] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 335.6 in stage 0.0 (TID 2510, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 281.7 in stage 0.0 (TID 2511, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 502.5 in stage 0.0 (TID 2221) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1176] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 502.6 in stage 0.0 (TID 2512, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 856.1 in stage 0.0 (TID 2202) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1177] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 776.2 in stage 0.0 (TID 2197) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1178] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 776.3 in stage 0.0 (TID 2513, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 776, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 543.4 in stage 0.0 (TID 2195) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1179] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 543.5 in stage 0.0 (TID 2514, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 164.5 in stage 0.0 (TID 2146) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1180] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 164.6 in stage 0.0 (TID 2515, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 856.2 in stage 0.0 (TID 2516, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 856, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 400.4 in stage 0.0 (TID 2105) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1181] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 177.6 in stage 0.0 (TID 2142) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1182] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 177.7 in stage 0.0 (TID 2517, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 868.0 in stage 0.0 (TID 1980) in 2676 ms on jg1-w-33.c.maclab-ukbb.internal (executor 140) (509/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 400.5 in stage 0.0 (TID 2518, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 53.8 in stage 0.0 (TID 2203) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1183] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 53.9 in stage 0.0 (TID 2519, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 433.4 in stage 0.0 (TID 2077) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1184] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 433.5 in stage 0.0 (TID 2520, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 433, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 270.4 in stage 0.0 (TID 2099) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1185] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 270.5 in stage 0.0 (TID 2521, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 270, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 904.0 in stage 0.0 (TID 2522, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 904, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 188.6 in stage 0.0 (TID 2079) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1186] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 541.3 in stage 0.0 (TID 2108) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1187] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 541.4 in stage 0.0 (TID 2523, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 541, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 774.2 in stage 0.0 (TID 2155) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1188] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 774.3 in stage 0.0 (TID 2524, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 774, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 212.6 in stage 0.0 (TID 2158) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1189] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 212.7 in stage 0.0 (TID 2525, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 810.1 in stage 0.0 (TID 1907) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1190] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 810.2 in stage 0.0 (TID 2526, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 810, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 459.5 in stage 0.0 (TID 2167) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1191] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 459.6 in stage 0.0 (TID 2527, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 504.6 in stage 0.0 (TID 2239) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1192] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 504.7 in stage 0.0 (TID 2528, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 878.0 in stage 0.0 (TID 2066) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1193] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 878.1 in stage 0.0 (TID 2529, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 878, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 408.8 in stage 0.0 (TID 2217) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1194] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 408.9 in stage 0.0 (TID 2530, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 487.6 in stage 0.0 (TID 2265) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1195] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 487.7 in stage 0.0 (TID 2531, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 584.4 in stage 0.0 (TID 2174) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1196] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 584.5 in stage 0.0 (TID 2532, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 869.0 in stage 0.0 (TID 1997) in 2667 ms on jg1-w-78.c.maclab-ukbb.internal (executor 5) (510/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 188.7 in stage 0.0 (TID 2533, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 526.4 in stage 0.0 (TID 2101) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1197] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 526.5 in stage 0.0 (TID 2534, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 526, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 351.6 in stage 0.0 (TID 2278) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1198] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 351.7 in stage 0.0 (TID 2535, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 769.3 in stage 0.0 (TID 2215) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1199] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 769.4 in stage 0.0 (TID 2536, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 359.4 in stage 0.0 (TID 2122) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1200] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 359.5 in stage 0.0 (TID 2537, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 345.5 in stage 0.0 (TID 2236) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1201] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 345.6 in stage 0.0 (TID 2538, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 905.0 in stage 0.0 (TID 2539, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 905, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 141.4 in stage 0.0 (TID 2113) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1202] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 843.1 in stage 0.0 (TID 2144) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1203] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 843.2 in stage 0.0 (TID 2540, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 843, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 709.3 in stage 0.0 (TID 2229) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1204] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 709.4 in stage 0.0 (TID 2541, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 340.4 in stage 0.0 (TID 2175) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1205] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 340.5 in stage 0.0 (TID 2542, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 690.3 in stage 0.0 (TID 2199) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1206] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 690.4 in stage 0.0 (TID 2543, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 141.5 in stage 0.0 (TID 2544, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 141, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 680.4 in stage 0.0 (TID 2222) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1207] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 544.5 in stage 0.0 (TID 2247) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1208] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 544.6 in stage 0.0 (TID 2545, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 608.4 in stage 0.0 (TID 2241) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1209] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 608.5 in stage 0.0 (TID 2546, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 691.2 in stage 0.0 (TID 2090) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1210] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 691.3 in stage 0.0 (TID 2547, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 691, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 414.6 in stage 0.0 (TID 2133) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1211] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 414.7 in stage 0.0 (TID 2548, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 399.9 in stage 0.0 (TID 2233) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1212] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 399.10 in stage 0.0 (TID 2549, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 725.2 in stage 0.0 (TID 2096) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1213] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 725.3 in stage 0.0 (TID 2550, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 725, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 58.8 in stage 0.0 (TID 2179) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1214] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 58.9 in stage 0.0 (TID 2551, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 863.0 in stage 0.0 (TID 1953) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1215] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 863.1 in stage 0.0 (TID 2552, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 863, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 877.0 in stage 0.0 (TID 2064) in 2419 ms on jg1-w-98.c.maclab-ukbb.internal (executor 94) (511/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 680.5 in stage 0.0 (TID 2553, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 331.6 in stage 0.0 (TID 2188) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1216] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 331.7 in stage 0.0 (TID 2554, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 310.6 in stage 0.0 (TID 2281) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1217] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 310.7 in stage 0.0 (TID 2555, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 488.4 in stage 0.0 (TID 2173) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1218] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 488.5 in stage 0.0 (TID 2556, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 334.5 in stage 0.0 (TID 2300) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1219] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 334.6 in stage 0.0 (TID 2557, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 867.0 in stage 0.0 (TID 1973) in 2891 ms on jg1-w-11.c.maclab-ukbb.internal (executor 73) (512/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 906.0 in stage 0.0 (TID 2558, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 906, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 398.3 in stage 0.0 (TID 2095) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1220] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 398.4 in stage 0.0 (TID 2559, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 398, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 194.7 in stage 0.0 (TID 2251) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1221] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 194.8 in stage 0.0 (TID 2560, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 220.7 in stage 0.0 (TID 2272) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1222] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 220.8 in stage 0.0 (TID 2561, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 434.4 in stage 0.0 (TID 2127) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1223] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 434.5 in stage 0.0 (TID 2562, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 434, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 478.5 in stage 0.0 (TID 2205) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1224] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 478.6 in stage 0.0 (TID 2563, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 192.5 in stage 0.0 (TID 2156) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1225] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 192.6 in stage 0.0 (TID 2564, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 907.0 in stage 0.0 (TID 2565, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 907, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 798.1 in stage 0.0 (TID 1930) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1226] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 582.3 in stage 0.0 (TID 2168) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1227] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 582.4 in stage 0.0 (TID 2566, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 582, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 536.4 in stage 0.0 (TID 2170) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1228] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 536.5 in stage 0.0 (TID 2567, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 785.1 in stage 0.0 (TID 2038) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1229] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 785.2 in stage 0.0 (TID 2568, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 785, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Finished task 845.0 in stage 0.0 (TID 1754) in 4160 ms on jg1-w-41.c.maclab-ukbb.internal (executor 148) (513/30000) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 798.2 in stage 0.0 (TID 2569, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 798, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 908.0 in stage 0.0 (TID 2570, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 908, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 390.4 in stage 0.0 (TID 2181) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1230] 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 762.3 in stage 0.0 (TID 2288) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1231] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 762.4 in stage 0.0 (TID 2571, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 347.5 in stage 0.0 (TID 2274) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1232] 2020-04-02 15:10:47 TaskSetManager: INFO: Starting task 347.6 in stage 0.0 (TID 2572, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:47 TaskSetManager: INFO: Lost task 614.2 in stage 0.0 (TID 2220) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1233] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 614.3 in stage 0.0 (TID 2573, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 418.6 in stage 0.0 (TID 2093) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1234] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 418.7 in stage 0.0 (TID 2574, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 197.5 in stage 0.0 (TID 2238) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1235] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 197.6 in stage 0.0 (TID 2575, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 881.0 in stage 0.0 (TID 2134) in 2162 ms on jg1-w-2.c.maclab-ukbb.internal (executor 79) (514/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 390.5 in stage 0.0 (TID 2576, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 744.3 in stage 0.0 (TID 2269) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1236] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 744.4 in stage 0.0 (TID 2577, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 461.4 in stage 0.0 (TID 2109) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1237] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 461.5 in stage 0.0 (TID 2578, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 461, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 887.0 in stage 0.0 (TID 2178) in 1966 ms on jg1-w-15.c.maclab-ukbb.internal (executor 127) (515/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 909.0 in stage 0.0 (TID 2579, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 909, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 143.6 in stage 0.0 (TID 2292) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1238] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 143.7 in stage 0.0 (TID 2580, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 875.0 in stage 0.0 (TID 2054) in 2616 ms on jg1-w-73.c.maclab-ukbb.internal (executor 97) (516/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 910.0 in stage 0.0 (TID 2581, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 910, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 474.5 in stage 0.0 (TID 2153) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1239] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 474.6 in stage 0.0 (TID 2582, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 225.6 in stage 0.0 (TID 2231) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1240] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 225.7 in stage 0.0 (TID 2583, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 598.5 in stage 0.0 (TID 2230) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1241] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 598.6 in stage 0.0 (TID 2584, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 861.1 in stage 0.0 (TID 2255) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1242] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 861.2 in stage 0.0 (TID 2585, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 861, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 506.5 in stage 0.0 (TID 2298) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1243] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 506.6 in stage 0.0 (TID 2586, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 911.0 in stage 0.0 (TID 2587, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 911, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 167.7 in stage 0.0 (TID 2234) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1244] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 588.4 in stage 0.0 (TID 2214) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1245] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 588.5 in stage 0.0 (TID 2588, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 588, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 333.6 in stage 0.0 (TID 2124) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1246] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 333.7 in stage 0.0 (TID 2589, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 883.0 in stage 0.0 (TID 2143) in 2210 ms on jg1-w-18.c.maclab-ukbb.internal (executor 172) (517/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 167.8 in stage 0.0 (TID 2590, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 814.2 in stage 0.0 (TID 2201) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1247] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 814.3 in stage 0.0 (TID 2591, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 814, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 1.10 in stage 0.0 (TID 2219) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1248] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 1.11 in stage 0.0 (TID 2592, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 625.4 in stage 0.0 (TID 2273) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1249] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 625.5 in stage 0.0 (TID 2593, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 879.0 in stage 0.0 (TID 2082) in 2572 ms on jg1-w-44.c.maclab-ukbb.internal (executor 105) (518/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 912.0 in stage 0.0 (TID 2594, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 912, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 703.2 in stage 0.0 (TID 2159) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1250] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 703.3 in stage 0.0 (TID 2595, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 703, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 612.3 in stage 0.0 (TID 2259) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1251] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 612.4 in stage 0.0 (TID 2596, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 612, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 50.6 in stage 0.0 (TID 2249) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1252] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 50.7 in stage 0.0 (TID 2597, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 475.6 in stage 0.0 (TID 2260) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1253] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 475.7 in stage 0.0 (TID 2598, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 627.4 in stage 0.0 (TID 2284) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1254] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 627.5 in stage 0.0 (TID 2599, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 247.6 in stage 0.0 (TID 2339) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1255] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 247.7 in stage 0.0 (TID 2600, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 913.0 in stage 0.0 (TID 2601, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 913, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 206.7 in stage 0.0 (TID 2330) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1256] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 154.11 in stage 0.0 (TID 2283) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1257] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 154.12 in stage 0.0 (TID 2602, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 215.3 in stage 0.0 (TID 2126) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1258] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 215.4 in stage 0.0 (TID 2603, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 215, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 761.3 in stage 0.0 (TID 2287) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1259] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 761.4 in stage 0.0 (TID 2604, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 761, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 125.5 in stage 0.0 (TID 2191) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1260] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 125.6 in stage 0.0 (TID 2605, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 803.2 in stage 0.0 (TID 2112) on jg1-w-66.c.maclab-ukbb.internal, executor 159: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1261] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 803.3 in stage 0.0 (TID 2606, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 803, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 151.7 in stage 0.0 (TID 2331) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1262] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 151.8 in stage 0.0 (TID 2607, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 517.5 in stage 0.0 (TID 2257) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1263] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 517.6 in stage 0.0 (TID 2608, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 592.4 in stage 0.0 (TID 2299) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1264] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 592.5 in stage 0.0 (TID 2609, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 57.6 in stage 0.0 (TID 2166) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1265] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 57.7 in stage 0.0 (TID 2610, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 124.5 in stage 0.0 (TID 2163) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1266] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 124.6 in stage 0.0 (TID 2611, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 206.8 in stage 0.0 (TID 2612, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 476.5 in stage 0.0 (TID 2209) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1267] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 520.4 in stage 0.0 (TID 2296) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1268] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 520.5 in stage 0.0 (TID 2613, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 166.6 in stage 0.0 (TID 2326) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1269] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 166.7 in stage 0.0 (TID 2614, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 874.0 in stage 0.0 (TID 2053) in 2817 ms on jg1-w-99.c.maclab-ukbb.internal (executor 30) (519/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 476.6 in stage 0.0 (TID 2615, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 859.0 in stage 0.0 (TID 1853) in 3816 ms on jg1-w-46.c.maclab-ukbb.internal (executor 181) (520/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 914.0 in stage 0.0 (TID 2616, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 914, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 915.0 in stage 0.0 (TID 2617, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 915, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 0.11 in stage 0.0 (TID 2344) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1270] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 241.4 in stage 0.0 (TID 2052) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1271] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 241.5 in stage 0.0 (TID 2618, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 241, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 698.3 in stage 0.0 (TID 2271) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1272] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 698.4 in stage 0.0 (TID 2619, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 698, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 775.2 in stage 0.0 (TID 2216) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1273] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 775.3 in stage 0.0 (TID 2620, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 775, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 687.2 in stage 0.0 (TID 2083) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1274] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 687.3 in stage 0.0 (TID 2621, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 687, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 768.2 in stage 0.0 (TID 2192) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1275] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 768.3 in stage 0.0 (TID 2622, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 768, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 683.3 in stage 0.0 (TID 2264) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1276] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 683.4 in stage 0.0 (TID 2623, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 683, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 849.1 in stage 0.0 (TID 2351) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1277] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 849.2 in stage 0.0 (TID 2624, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 849, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 428.6 in stage 0.0 (TID 2248) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1278] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 428.7 in stage 0.0 (TID 2625, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 361.4 in stage 0.0 (TID 2194) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1279] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 361.5 in stage 0.0 (TID 2626, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 361, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 493.4 in stage 0.0 (TID 2223) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1280] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 493.5 in stage 0.0 (TID 2627, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 106.6 in stage 0.0 (TID 2136) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1281] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 106.7 in stage 0.0 (TID 2628, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 62.5 in stage 0.0 (TID 2116) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1282] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 62.6 in stage 0.0 (TID 2629, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 326.4 in stage 0.0 (TID 2262) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1283] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 326.5 in stage 0.0 (TID 2630, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 326, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 591.3 in stage 0.0 (TID 2254) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1284] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 591.4 in stage 0.0 (TID 2631, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 591, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 513.6 in stage 0.0 (TID 2355) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1285] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 513.7 in stage 0.0 (TID 2632, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 218.5 in stage 0.0 (TID 2210) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1286] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 218.6 in stage 0.0 (TID 2633, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 712.1 in stage 0.0 (TID 1555) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1287] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 712.2 in stage 0.0 (TID 2634, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 712, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 799.2 in stage 0.0 (TID 2312) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1288] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 799.3 in stage 0.0 (TID 2635, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 799, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 601.4 in stage 0.0 (TID 2224) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1289] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 601.5 in stage 0.0 (TID 2636, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 401.4 in stage 0.0 (TID 2314) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1290] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 401.5 in stage 0.0 (TID 2637, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 273.4 in stage 0.0 (TID 2200) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1291] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 273.5 in stage 0.0 (TID 2638, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 273, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 699.3 in stage 0.0 (TID 2279) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1292] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 699.4 in stage 0.0 (TID 2639, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 217.5 in stage 0.0 (TID 1958) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1293] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 217.6 in stage 0.0 (TID 2640, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 0.12 in stage 0.0 (TID 2641, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 507.4 in stage 0.0 (TID 2237) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1294] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 554.5 in stage 0.0 (TID 2345) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1295] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 554.6 in stage 0.0 (TID 2642, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 821.2 in stage 0.0 (TID 2366) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1296] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 821.3 in stage 0.0 (TID 2643, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 107.5 in stage 0.0 (TID 2245) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1297] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 107.6 in stage 0.0 (TID 2644, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 202.7 in stage 0.0 (TID 2343) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1298] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 202.8 in stage 0.0 (TID 2645, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 507.5 in stage 0.0 (TID 2646, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 553.2 in stage 0.0 (TID 2277) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1299] 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 873.0 in stage 0.0 (TID 2051) in 3002 ms on jg1-w-9.c.maclab-ukbb.internal (executor 121) (521/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 553.3 in stage 0.0 (TID 2647, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 553, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 519.5 in stage 0.0 (TID 2320) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1300] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 519.6 in stage 0.0 (TID 2648, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 348.5 in stage 0.0 (TID 2304) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1301] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 348.6 in stage 0.0 (TID 2649, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 806.2 in stage 0.0 (TID 2327) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1302] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 806.3 in stage 0.0 (TID 2650, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 806, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 818.2 in stage 0.0 (TID 2319) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1303] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 818.3 in stage 0.0 (TID 2651, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 818, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 350.4 in stage 0.0 (TID 2176) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1304] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 350.5 in stage 0.0 (TID 2652, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 350, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 486.5 in stage 0.0 (TID 2340) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1305] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 486.6 in stage 0.0 (TID 2653, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 704.3 in stage 0.0 (TID 2295) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1306] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 704.4 in stage 0.0 (TID 2654, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 704, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 767.3 in stage 0.0 (TID 2335) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1307] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 767.4 in stage 0.0 (TID 2655, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 767, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 158.7 in stage 0.0 (TID 2328) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1308] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 158.8 in stage 0.0 (TID 2656, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 274.6 in stage 0.0 (TID 2198) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1309] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 274.7 in stage 0.0 (TID 2657, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 187.7 in stage 0.0 (TID 2338) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1310] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 187.8 in stage 0.0 (TID 2658, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 209.6 in stage 0.0 (TID 2305) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1311] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 209.7 in stage 0.0 (TID 2659, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 198.7 in stage 0.0 (TID 2349) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1312] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 198.8 in stage 0.0 (TID 2660, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 330.3 in stage 0.0 (TID 2246) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1313] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 330.4 in stage 0.0 (TID 2661, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 330, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 175.6 in stage 0.0 (TID 2266) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1314] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 175.7 in stage 0.0 (TID 2662, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 728.4 in stage 0.0 (TID 2396) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1315] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 728.5 in stage 0.0 (TID 2663, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 715.3 in stage 0.0 (TID 2307) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1316] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 715.4 in stage 0.0 (TID 2664, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 715, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 572.3 in stage 0.0 (TID 2362) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1317] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 572.4 in stage 0.0 (TID 2665, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 572, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 441.6 in stage 0.0 (TID 2268) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1318] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 441.7 in stage 0.0 (TID 2666, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 155.5 in stage 0.0 (TID 2150) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1319] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 155.6 in stage 0.0 (TID 2667, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 155, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 511.5 in stage 0.0 (TID 2325) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1320] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 511.6 in stage 0.0 (TID 2668, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 916.0 in stage 0.0 (TID 2669, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 916, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 113.7 in stage 0.0 (TID 2378) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1321] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 679.3 in stage 0.0 (TID 2228) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1322] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 679.4 in stage 0.0 (TID 2670, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 679, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 804.1 in stage 0.0 (TID 2302) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1323] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 804.2 in stage 0.0 (TID 2671, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 804, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 113.8 in stage 0.0 (TID 2672, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 435.6 in stage 0.0 (TID 2293) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1324] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 607.3 in stage 0.0 (TID 2157) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1325] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 607.4 in stage 0.0 (TID 2673, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 607, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 515.4 in stage 0.0 (TID 2208) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1326] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 515.5 in stage 0.0 (TID 2674, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 515, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 435.7 in stage 0.0 (TID 2675, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 631.3 in stage 0.0 (TID 2213) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1327] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 20.8 in stage 0.0 (TID 2359) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1328] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 20.9 in stage 0.0 (TID 2676, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 54.4 in stage 0.0 (TID 2039) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1329] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 54.5 in stage 0.0 (TID 2677, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 54, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 631.4 in stage 0.0 (TID 2678, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 631, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 628.4 in stage 0.0 (TID 2342) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1330] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 39.7 in stage 0.0 (TID 2308) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1331] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 39.8 in stage 0.0 (TID 2679, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 759.3 in stage 0.0 (TID 2297) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1332] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 759.4 in stage 0.0 (TID 2680, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 759, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 870.0 in stage 0.0 (TID 2013) in 3328 ms on jg1-w-7.c.maclab-ukbb.internal (executor 120) (522/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 628.5 in stage 0.0 (TID 2681, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 829.2 in stage 0.0 (TID 2311) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1333] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 829.3 in stage 0.0 (TID 2682, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 829, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 497.5 in stage 0.0 (TID 2367) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1334] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 497.6 in stage 0.0 (TID 2683, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 917.0 in stage 0.0 (TID 2684, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 917, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 275.7 in stage 0.0 (TID 2368) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1335] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 360.5 in stage 0.0 (TID 2316) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1336] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 360.6 in stage 0.0 (TID 2685, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 746.3 in stage 0.0 (TID 2317) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1337] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 746.4 in stage 0.0 (TID 2686, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 224.5 in stage 0.0 (TID 2261) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1338] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 224.6 in stage 0.0 (TID 2687, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 596.4 in stage 0.0 (TID 2321) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1339] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 596.5 in stage 0.0 (TID 2688, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 275.8 in stage 0.0 (TID 2689, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 406.7 in stage 0.0 (TID 2363) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1340] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 280.5 in stage 0.0 (TID 2306) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1341] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 280.6 in stage 0.0 (TID 2690, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 303.6 in stage 0.0 (TID 2347) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1342] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 303.7 in stage 0.0 (TID 2691, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 535.5 in stage 0.0 (TID 2323) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1343] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 535.6 in stage 0.0 (TID 2692, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 780.3 in stage 0.0 (TID 2369) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1344] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 780.4 in stage 0.0 (TID 2693, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 142.7 in stage 0.0 (TID 2377) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1345] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 142.8 in stage 0.0 (TID 2694, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 634.3 in stage 0.0 (TID 2256) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1346] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 634.4 in stage 0.0 (TID 2695, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 634, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 516.4 in stage 0.0 (TID 2290) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1347] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 516.5 in stage 0.0 (TID 2696, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 654.3 in stage 0.0 (TID 2310) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1348] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 654.4 in stage 0.0 (TID 2697, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 654, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 242.5 in stage 0.0 (TID 2106) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1349] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 242.6 in stage 0.0 (TID 2698, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 721.4 in stage 0.0 (TID 2411) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1350] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 721.5 in stage 0.0 (TID 2699, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 160.5 in stage 0.0 (TID 2301) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1351] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 160.6 in stage 0.0 (TID 2700, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 193.7 in stage 0.0 (TID 2371) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1352] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 193.8 in stage 0.0 (TID 2701, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 719.4 in stage 0.0 (TID 2354) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1353] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 719.5 in stage 0.0 (TID 2702, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 63.8 in stage 0.0 (TID 2334) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1354] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 63.9 in stage 0.0 (TID 2703, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 109.6 in stage 0.0 (TID 2337) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1355] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 109.7 in stage 0.0 (TID 2704, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 876.0 in stage 0.0 (TID 2063) in 3225 ms on jg1-w-47.c.maclab-ukbb.internal (executor 169) (523/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 406.8 in stage 0.0 (TID 2705, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 624.3 in stage 0.0 (TID 2183) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1356] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 624.4 in stage 0.0 (TID 2706, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 624, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 791.3 in stage 0.0 (TID 2408) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1357] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 791.4 in stage 0.0 (TID 2707, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 791, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 918.0 in stage 0.0 (TID 2708, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 918, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 282.7 in stage 0.0 (TID 2428) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1358] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 257.7 in stage 0.0 (TID 2370) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1359] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 257.8 in stage 0.0 (TID 2709, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 518.5 in stage 0.0 (TID 2227) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1360] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 518.6 in stage 0.0 (TID 2710, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 658.4 in stage 0.0 (TID 2383) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1361] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 658.5 in stage 0.0 (TID 2711, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 658, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 31.7 in stage 0.0 (TID 2286) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1362] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 31.8 in stage 0.0 (TID 2712, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 694.4 in stage 0.0 (TID 2436) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1363] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 694.5 in stage 0.0 (TID 2713, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 422.5 in stage 0.0 (TID 2244) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1364] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 422.6 in stage 0.0 (TID 2714, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 693.2 in stage 0.0 (TID 2258) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1365] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 693.3 in stage 0.0 (TID 2715, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 693, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 790.2 in stage 0.0 (TID 2318) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1366] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 790.3 in stage 0.0 (TID 2716, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 790, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 91.8 in stage 0.0 (TID 2469) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1367] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 91.9 in stage 0.0 (TID 2717, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 427.6 in stage 0.0 (TID 2360) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1368] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 427.7 in stage 0.0 (TID 2718, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 186.6 in stage 0.0 (TID 2313) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1369] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 186.7 in stage 0.0 (TID 2719, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 346.5 in stage 0.0 (TID 2405) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1370] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 346.6 in stage 0.0 (TID 2720, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 372.4 in stage 0.0 (TID 2294) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1371] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 372.5 in stage 0.0 (TID 2721, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 794.3 in stage 0.0 (TID 2447) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1372] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 794.4 in stage 0.0 (TID 2722, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 794, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 594.4 in stage 0.0 (TID 2336) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1373] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 594.5 in stage 0.0 (TID 2723, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 121.6 in stage 0.0 (TID 2348) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1374] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 121.7 in stage 0.0 (TID 2724, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 282.8 in stage 0.0 (TID 2725, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 152.5 in stage 0.0 (TID 2478) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1375] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 593.5 in stage 0.0 (TID 2424) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1376] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 593.6 in stage 0.0 (TID 2726, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 424.4 in stage 0.0 (TID 2252) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1377] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 424.5 in stage 0.0 (TID 2727, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 424, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 697.3 in stage 0.0 (TID 2417) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1378] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 697.4 in stage 0.0 (TID 2728, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 697, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 495.5 in stage 0.0 (TID 2361) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1379] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 495.6 in stage 0.0 (TID 2729, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 366.5 in stage 0.0 (TID 2380) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1380] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 366.6 in stage 0.0 (TID 2730, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 152.6 in stage 0.0 (TID 2731, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 789.3 in stage 0.0 (TID 2430) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1381] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 847.2 in stage 0.0 (TID 2410) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1382] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 847.3 in stage 0.0 (TID 2732, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 847, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 358.4 in stage 0.0 (TID 2211) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1383] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 358.5 in stage 0.0 (TID 2733, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 358, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 201.7 in stage 0.0 (TID 2381) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1384] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 201.8 in stage 0.0 (TID 2734, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 276.6 in stage 0.0 (TID 2341) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1385] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 276.7 in stage 0.0 (TID 2735, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 673.4 in stage 0.0 (TID 2466) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1386] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 673.5 in stage 0.0 (TID 2736, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 839.1 in stage 0.0 (TID 2358) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1387] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 839.2 in stage 0.0 (TID 2737, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 839, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 756.3 in stage 0.0 (TID 2442) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1388] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 756.4 in stage 0.0 (TID 2738, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 165.6 in stage 0.0 (TID 2280) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1389] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 165.7 in stage 0.0 (TID 2739, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 707.4 in stage 0.0 (TID 2437) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1390] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 707.5 in stage 0.0 (TID 2740, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 793.2 in stage 0.0 (TID 2388) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1391] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 793.3 in stage 0.0 (TID 2741, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 793, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 779.2 in stage 0.0 (TID 2356) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1392] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 779.3 in stage 0.0 (TID 2742, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 779, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 75.8 in stage 0.0 (TID 2464) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1393] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 75.9 in stage 0.0 (TID 2743, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 454.4 in stage 0.0 (TID 2315) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1394] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 454.5 in stage 0.0 (TID 2744, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 454, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 655.4 in stage 0.0 (TID 2406) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1395] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 655.5 in stage 0.0 (TID 2745, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 655, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 173.5 in stage 0.0 (TID 2267) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1396] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 173.6 in stage 0.0 (TID 2746, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 789.4 in stage 0.0 (TID 2747, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 778.2 in stage 0.0 (TID 2207) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1397] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 778.3 in stage 0.0 (TID 2748, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 778, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 443.7 in stage 0.0 (TID 2441) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1398] 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 817.2 in stage 0.0 (TID 2395) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1399] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 817.3 in stage 0.0 (TID 2749, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 817, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 894.0 in stage 0.0 (TID 2275) in 2395 ms on jg1-w-32.c.maclab-ukbb.internal (executor 57) (524/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 443.8 in stage 0.0 (TID 2750, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 51.6 in stage 0.0 (TID 2154) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1400] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 51.7 in stage 0.0 (TID 2751, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 496.6 in stage 0.0 (TID 2385) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1401] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 496.7 in stage 0.0 (TID 2752, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 895.0 in stage 0.0 (TID 2291) in 2329 ms on jg1-w-51.c.maclab-ukbb.internal (executor 50) (525/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 919.0 in stage 0.0 (TID 2753, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 919, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 289.6 in stage 0.0 (TID 2372) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1402] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 289.7 in stage 0.0 (TID 2754, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 288.6 in stage 0.0 (TID 2389) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1403] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 288.7 in stage 0.0 (TID 2755, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 860.0 in stage 0.0 (TID 1883) in 4381 ms on jg1-w-36.c.maclab-ukbb.internal (executor 187) (526/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 920.0 in stage 0.0 (TID 2756, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 920, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 47.8 in stage 0.0 (TID 2404) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1404] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 47.9 in stage 0.0 (TID 2757, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 327.5 in stage 0.0 (TID 2465) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1405] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 327.6 in stage 0.0 (TID 2758, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 764.3 in stage 0.0 (TID 2480) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1406] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 764.4 in stage 0.0 (TID 2759, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 764, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 355.7 in stage 0.0 (TID 2470) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1407] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 355.8 in stage 0.0 (TID 2760, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 848.2 in stage 0.0 (TID 2432) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1408] 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 848.3 in stage 0.0 (TID 2761, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 848, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Finished task 889.0 in stage 0.0 (TID 2232) in 2701 ms on jg1-w-69.c.maclab-ukbb.internal (executor 136) (527/30000) 2020-04-02 15:10:48 TaskSetManager: INFO: Starting task 921.0 in stage 0.0 (TID 2762, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 921, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:48 TaskSetManager: INFO: Lost task 3.8 in stage 0.0 (TID 2012) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1409] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 3.9 in stage 0.0 (TID 2763, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 781.3 in stage 0.0 (TID 2384) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1410] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 781.4 in stage 0.0 (TID 2764, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 578.4 in stage 0.0 (TID 2393) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1411] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 578.5 in stage 0.0 (TID 2765, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 578, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 922.0 in stage 0.0 (TID 2766, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 922, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 878.1 in stage 0.0 (TID 2529) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1412] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 191.6 in stage 0.0 (TID 2346) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1413] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 191.7 in stage 0.0 (TID 2767, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 670.2 in stage 0.0 (TID 2332) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1414] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 670.3 in stage 0.0 (TID 2768, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 670, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 153.6 in stage 0.0 (TID 2376) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1415] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 153.7 in stage 0.0 (TID 2769, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 111.6 in stage 0.0 (TID 2419) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1416] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 111.7 in stage 0.0 (TID 2770, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 718.4 in stage 0.0 (TID 2482) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1417] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 718.5 in stage 0.0 (TID 2771, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 407.7 in stage 0.0 (TID 2333) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1418] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 407.8 in stage 0.0 (TID 2772, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 415.8 in stage 0.0 (TID 2429) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1419] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 415.9 in stage 0.0 (TID 2773, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 299.4 in stage 0.0 (TID 2282) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1420] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 299.5 in stage 0.0 (TID 2774, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 299, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 157.9 in stage 0.0 (TID 2483) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1421] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 157.10 in stage 0.0 (TID 2775, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 878.2 in stage 0.0 (TID 2776, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 878, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 828.2 in stage 0.0 (TID 2379) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1422] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 710.4 in stage 0.0 (TID 2449) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1423] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 710.5 in stage 0.0 (TID 2777, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 812.2 in stage 0.0 (TID 2373) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1424] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 812.3 in stage 0.0 (TID 2778, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 812, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 605.3 in stage 0.0 (TID 2324) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1425] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 605.4 in stage 0.0 (TID 2779, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 605, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 248.6 in stage 0.0 (TID 2397) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1426] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 248.7 in stage 0.0 (TID 2780, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 423.8 in stage 0.0 (TID 2494) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1427] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 423.9 in stage 0.0 (TID 2781, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 391.3 in stage 0.0 (TID 2322) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1428] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 391.4 in stage 0.0 (TID 2782, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 391, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 846.2 in stage 0.0 (TID 2486) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1429] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 846.3 in stage 0.0 (TID 2783, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 846, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Finished task 886.0 in stage 0.0 (TID 2177) in 3048 ms on jg1-w-88.c.maclab-ukbb.internal (executor 178) (528/30000) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 828.3 in stage 0.0 (TID 2784, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 828, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 783.3 in stage 0.0 (TID 2445) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1430] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 783.4 in stage 0.0 (TID 2785, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 783, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 796.2 in stage 0.0 (TID 2352) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1431] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 796.3 in stage 0.0 (TID 2786, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 796, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 840.2 in stage 0.0 (TID 2438) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1432] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 840.3 in stage 0.0 (TID 2787, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 840, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 128.5 in stage 0.0 (TID 2427) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1433] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 128.6 in stage 0.0 (TID 2788, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 923.0 in stage 0.0 (TID 2789, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 923, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 777.3 in stage 0.0 (TID 2476) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1434] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 777.4 in stage 0.0 (TID 2790, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 52.10 in stage 0.0 (TID 2508) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1435] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 727.4 in stage 0.0 (TID 2497) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1436] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 727.5 in stage 0.0 (TID 2791, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 903.0 in stage 0.0 (TID 2484) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1437] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 903.1 in stage 0.0 (TID 2792, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 903, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 52.11 in stage 0.0 (TID 2793, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 53.9 in stage 0.0 (TID 2519) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1438] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 368.4 in stage 0.0 (TID 2426) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1439] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 368.5 in stage 0.0 (TID 2794, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 368, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 568.4 in stage 0.0 (TID 2507) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1440] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 568.5 in stage 0.0 (TID 2795, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 195.8 in stage 0.0 (TID 2495) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1441] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 195.9 in stage 0.0 (TID 2796, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 644.4 in stage 0.0 (TID 2350) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1442] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 644.5 in stage 0.0 (TID 2797, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 53.10 in stage 0.0 (TID 2798, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 392.6 in stage 0.0 (TID 2481) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1443] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 659.1 in stage 0.0 (TID 1512) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1444] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 659.2 in stage 0.0 (TID 2799, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 659, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 584.5 in stage 0.0 (TID 2532) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1445] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 584.6 in stage 0.0 (TID 2800, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 409.7 in stage 0.0 (TID 2392) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1446] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 409.8 in stage 0.0 (TID 2801, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 140.6 in stage 0.0 (TID 2479) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1447] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 140.7 in stage 0.0 (TID 2802, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 449.8 in stage 0.0 (TID 2425) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1448] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 449.9 in stage 0.0 (TID 2803, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 736.3 in stage 0.0 (TID 2463) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1449] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 736.4 in stage 0.0 (TID 2804, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 492.5 in stage 0.0 (TID 2415) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1450] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 492.6 in stage 0.0 (TID 2805, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 709.4 in stage 0.0 (TID 2541) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1451] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 709.5 in stage 0.0 (TID 2806, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Finished task 893.0 in stage 0.0 (TID 2270) in 2708 ms on jg1-w-50.c.maclab-ukbb.internal (executor 14) (529/30000) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 392.7 in stage 0.0 (TID 2807, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 56.6 in stage 0.0 (TID 2303) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1452] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 56.7 in stage 0.0 (TID 2808, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 716.3 in stage 0.0 (TID 2402) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1453] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 716.4 in stage 0.0 (TID 2809, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 716, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Finished task 890.0 in stage 0.0 (TID 2243) in 2857 ms on jg1-w-86.c.maclab-ukbb.internal (executor 65) (530/30000) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 924.0 in stage 0.0 (TID 2810, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 924, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 425.6 in stage 0.0 (TID 2409) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1454] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 425.7 in stage 0.0 (TID 2811, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 460.5 in stage 0.0 (TID 2276) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1455] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 460.6 in stage 0.0 (TID 2812, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 351.7 in stage 0.0 (TID 2535) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1456] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 351.8 in stage 0.0 (TID 2813, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 925.0 in stage 0.0 (TID 2814, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 925, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 177.7 in stage 0.0 (TID 2517) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1457] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 585.4 in stage 0.0 (TID 2375) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1458] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 585.5 in stage 0.0 (TID 2815, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 585, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 784.1 in stage 0.0 (TID 2414) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1459] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 784.2 in stage 0.0 (TID 2816, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 784, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 354.6 in stage 0.0 (TID 2489) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1460] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 354.7 in stage 0.0 (TID 2817, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 852.2 in stage 0.0 (TID 2498) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1461] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 852.3 in stage 0.0 (TID 2818, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 852, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 762.4 in stage 0.0 (TID 2571) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1462] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 762.5 in stage 0.0 (TID 2819, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 170.7 in stage 0.0 (TID 2353) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1463] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 170.8 in stage 0.0 (TID 2820, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 730.4 in stage 0.0 (TID 2493) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1464] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 730.5 in stage 0.0 (TID 2821, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 730, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 49.7 in stage 0.0 (TID 2309) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1465] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 49.8 in stage 0.0 (TID 2822, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 58.9 in stage 0.0 (TID 2551) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1466] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 58.10 in stage 0.0 (TID 2823, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 504.7 in stage 0.0 (TID 2528) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1467] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 504.8 in stage 0.0 (TID 2824, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 758.3 in stage 0.0 (TID 2462) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1468] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 758.4 in stage 0.0 (TID 2825, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 758, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 177.8 in stage 0.0 (TID 2826, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 926.0 in stage 0.0 (TID 2827, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 926, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 136.6 in stage 0.0 (TID 2435) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1469] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 521.4 in stage 0.0 (TID 2422) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1470] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 205.7 in stage 0.0 (TID 2416) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1471] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 205.8 in stage 0.0 (TID 2828, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 521.5 in stage 0.0 (TID 2829, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 521, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 660.4 in stage 0.0 (TID 2474) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1472] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 194.8 in stage 0.0 (TID 2560) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1473] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 194.9 in stage 0.0 (TID 2830, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 880.1 in stage 0.0 (TID 2448) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1474] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 880.2 in stage 0.0 (TID 2831, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 880, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 842.2 in stage 0.0 (TID 2450) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1475] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 842.3 in stage 0.0 (TID 2832, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 842, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 660.5 in stage 0.0 (TID 2833, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 660, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 345.6 in stage 0.0 (TID 2538) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1476] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 196.6 in stage 0.0 (TID 2418) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1477] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 196.7 in stage 0.0 (TID 2834, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 347.6 in stage 0.0 (TID 2572) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1478] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 347.7 in stage 0.0 (TID 2835, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 281.7 in stage 0.0 (TID 2511) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1479] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 281.8 in stage 0.0 (TID 2836, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 169.7 in stage 0.0 (TID 2387) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1480] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 169.8 in stage 0.0 (TID 2837, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 765.3 in stage 0.0 (TID 2496) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1481] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 765.4 in stage 0.0 (TID 2838, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 765, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 290.4 in stage 0.0 (TID 2289) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1482] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 290.5 in stage 0.0 (TID 2839, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 290, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 808.2 in stage 0.0 (TID 2403) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1483] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 808.3 in stage 0.0 (TID 2840, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 808, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 345.7 in stage 0.0 (TID 2841, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 776.3 in stage 0.0 (TID 2513) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1484] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 776.4 in stage 0.0 (TID 2842, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 776, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 331.7 in stage 0.0 (TID 2554) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1485] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 862.1 in stage 0.0 (TID 2382) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1486] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 862.2 in stage 0.0 (TID 2843, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 862, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 246.6 in stage 0.0 (TID 2458) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1487] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 246.7 in stage 0.0 (TID 2844, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Finished task 891.0 in stage 0.0 (TID 2253) in 2964 ms on jg1-w-3.c.maclab-ukbb.internal (executor 84) (531/30000) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 331.8 in stage 0.0 (TID 2845, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 620.3 in stage 0.0 (TID 2398) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1488] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 620.4 in stage 0.0 (TID 2846, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 620, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 439.6 in stage 0.0 (TID 2431) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1489] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 439.7 in stage 0.0 (TID 2847, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 597.5 in stage 0.0 (TID 2504) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1490] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 597.6 in stage 0.0 (TID 2848, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 408.9 in stage 0.0 (TID 2530) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1491] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 408.10 in stage 0.0 (TID 2849, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 459.6 in stage 0.0 (TID 2527) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1492] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 459.7 in stage 0.0 (TID 2850, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 657.3 in stage 0.0 (TID 2477) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1493] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 657.4 in stage 0.0 (TID 2851, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 657, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 426.8 in stage 0.0 (TID 2492) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1494] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 426.9 in stage 0.0 (TID 2852, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 136.7 in stage 0.0 (TID 2853, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 614.3 in stage 0.0 (TID 2573) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1495] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 614.4 in stage 0.0 (TID 2854, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 711.3 in stage 0.0 (TID 2457) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1496] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 335.6 in stage 0.0 (TID 2510) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1497] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 335.7 in stage 0.0 (TID 2855, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 711.4 in stage 0.0 (TID 2856, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 711, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 502.6 in stage 0.0 (TID 2512) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1498] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 609.5 in stage 0.0 (TID 2468) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1499] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 609.6 in stage 0.0 (TID 2857, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Finished task 898.0 in stage 0.0 (TID 2401) in 2144 ms on jg1-w-26.c.maclab-ukbb.internal (executor 21) (532/30000) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 502.7 in stage 0.0 (TID 2858, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 162.5 in stage 0.0 (TID 2456) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1500] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 162.6 in stage 0.0 (TID 2859, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 162, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 927.0 in stage 0.0 (TID 2860, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 927, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 505.6 in stage 0.0 (TID 2499) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1501] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 167.8 in stage 0.0 (TID 2590) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1502] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 167.9 in stage 0.0 (TID 2861, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 742.4 in stage 0.0 (TID 2503) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1503] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 742.5 in stage 0.0 (TID 2862, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 359.5 in stage 0.0 (TID 2537) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1504] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 359.6 in stage 0.0 (TID 2863, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 702.3 in stage 0.0 (TID 2440) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1505] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 702.4 in stage 0.0 (TID 2864, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 702, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 199.8 in stage 0.0 (TID 2421) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1506] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 199.9 in stage 0.0 (TID 2865, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 478.6 in stage 0.0 (TID 2563) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1507] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 478.7 in stage 0.0 (TID 2866, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 400.5 in stage 0.0 (TID 2518) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1508] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 400.6 in stage 0.0 (TID 2867, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 604.4 in stage 0.0 (TID 2391) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1509] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 604.5 in stage 0.0 (TID 2868, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 604, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 505.7 in stage 0.0 (TID 2869, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 896.0 in stage 0.0 (TID 2374) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1510] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 156.8 in stage 0.0 (TID 2443) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1511] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 156.9 in stage 0.0 (TID 2870, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 896.1 in stage 0.0 (TID 2871, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 896, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 769.4 in stage 0.0 (TID 2536) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1512] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 334.6 in stage 0.0 (TID 2557) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1513] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 334.7 in stage 0.0 (TID 2872, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 487.7 in stage 0.0 (TID 2531) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1514] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 487.8 in stage 0.0 (TID 2873, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 897.0 in stage 0.0 (TID 2390) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1515] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 897.1 in stage 0.0 (TID 2874, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 897, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 769.5 in stage 0.0 (TID 2875, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 333.7 in stage 0.0 (TID 2589) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1516] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 247.7 in stage 0.0 (TID 2600) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1517] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 247.8 in stage 0.0 (TID 2876, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 188.7 in stage 0.0 (TID 2533) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1518] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 188.8 in stage 0.0 (TID 2877, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 310.7 in stage 0.0 (TID 2555) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1519] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 310.8 in stage 0.0 (TID 2878, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 197.6 in stage 0.0 (TID 2575) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1520] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 197.7 in stage 0.0 (TID 2879, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 333.8 in stage 0.0 (TID 2880, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 774.3 in stage 0.0 (TID 2524) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1521] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 774.4 in stage 0.0 (TID 2881, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 774, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 690.4 in stage 0.0 (TID 2543) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1522] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 390.5 in stage 0.0 (TID 2576) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1523] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 390.6 in stage 0.0 (TID 2882, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 508.4 in stage 0.0 (TID 2413) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1524] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 508.5 in stage 0.0 (TID 2883, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 508, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 856.2 in stage 0.0 (TID 2516) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1525] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 856.3 in stage 0.0 (TID 2884, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 856, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 185.7 in stage 0.0 (TID 2491) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1526] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 185.8 in stage 0.0 (TID 2885, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 690.5 in stage 0.0 (TID 2886, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 592.5 in stage 0.0 (TID 2609) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1527] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 340.5 in stage 0.0 (TID 2542) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1528] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 340.6 in stage 0.0 (TID 2887, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 668.3 in stage 0.0 (TID 2365) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1529] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 668.4 in stage 0.0 (TID 2888, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 668, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 833.2 in stage 0.0 (TID 2487) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1530] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 833.3 in stage 0.0 (TID 2889, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 833, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 143.7 in stage 0.0 (TID 2580) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1531] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 143.8 in stage 0.0 (TID 2890, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 64.6 in stage 0.0 (TID 2357) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1532] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 64.7 in stage 0.0 (TID 2891, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 567.4 in stage 0.0 (TID 2471) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1533] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 567.5 in stage 0.0 (TID 2892, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 567, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 544.6 in stage 0.0 (TID 2545) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1534] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 544.7 in stage 0.0 (TID 2893, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 543.5 in stage 0.0 (TID 2514) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1535] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 543.6 in stage 0.0 (TID 2894, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Finished task 892.0 in stage 0.0 (TID 2263) in 3109 ms on jg1-w-73.c.maclab-ukbb.internal (executor 130) (533/30000) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 592.6 in stage 0.0 (TID 2895, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 627.5 in stage 0.0 (TID 2599) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1536] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 627.6 in stage 0.0 (TID 2896, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 928.0 in stage 0.0 (TID 2897, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 928, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 653.4 in stage 0.0 (TID 2509) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1537] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 653.5 in stage 0.0 (TID 2898, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 653, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 744.4 in stage 0.0 (TID 2577) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1538] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 598.6 in stage 0.0 (TID 2584) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1539] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 598.7 in stage 0.0 (TID 2899, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 444.7 in stage 0.0 (TID 2407) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1540] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 444.8 in stage 0.0 (TID 2900, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 798.2 in stage 0.0 (TID 2569) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1541] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 798.3 in stage 0.0 (TID 2901, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 798, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 680.5 in stage 0.0 (TID 2553) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1542] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 680.6 in stage 0.0 (TID 2902, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 27.7 in stage 0.0 (TID 2454) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1543] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 27.8 in stage 0.0 (TID 2903, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 744.5 in stage 0.0 (TID 2904, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 220.8 in stage 0.0 (TID 2561) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1544] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 506.6 in stage 0.0 (TID 2586) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1545] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 506.7 in stage 0.0 (TID 2905, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 151.8 in stage 0.0 (TID 2607) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1546] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 151.9 in stage 0.0 (TID 2906, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 855.2 in stage 0.0 (TID 2446) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1547] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 855.3 in stage 0.0 (TID 2907, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 855, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 519.6 in stage 0.0 (TID 2648) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1548] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 519.7 in stage 0.0 (TID 2908, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 50.7 in stage 0.0 (TID 2597) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1549] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 50.8 in stage 0.0 (TID 2909, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 761.4 in stage 0.0 (TID 2604) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1550] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 761.5 in stage 0.0 (TID 2910, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 761, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 821.3 in stage 0.0 (TID 2643) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1551] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 821.4 in stage 0.0 (TID 2911, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 277.6 in stage 0.0 (TID 2467) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1552] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 277.7 in stage 0.0 (TID 2912, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 474.6 in stage 0.0 (TID 2582) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1553] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 474.7 in stage 0.0 (TID 2913, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 220.9 in stage 0.0 (TID 2914, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 541.4 in stage 0.0 (TID 2523) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1554] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 489.5 in stage 0.0 (TID 2434) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1555] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 489.6 in stage 0.0 (TID 2915, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 154.12 in stage 0.0 (TID 2602) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1556] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 154.13 in stage 0.0 (TID 2916, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 863.1 in stage 0.0 (TID 2552) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1557] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 863.2 in stage 0.0 (TID 2917, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 863, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 588.5 in stage 0.0 (TID 2588) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1558] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 588.6 in stage 0.0 (TID 2918, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 588, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Finished task 902.0 in stage 0.0 (TID 2455) in 2213 ms on jg1-w-23.c.maclab-ukbb.internal (executor 46) (534/30000) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 541.5 in stage 0.0 (TID 2919, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 541, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 292.5 in stage 0.0 (TID 2088) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1559] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 292.6 in stage 0.0 (TID 2920, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 929.0 in stage 0.0 (TID 2921, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 929, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 398.4 in stage 0.0 (TID 2559) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1560] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 500.5 in stage 0.0 (TID 2444) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1561] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 500.6 in stage 0.0 (TID 2922, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 491.5 in stage 0.0 (TID 2400) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1562] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 491.6 in stage 0.0 (TID 2923, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Finished task 882.0 in stage 0.0 (TID 2137) in 3886 ms on jg1-w-98.c.maclab-ukbb.internal (executor 62) (535/30000) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 398.5 in stage 0.0 (TID 2924, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 398, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 861.2 in stage 0.0 (TID 2585) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1563] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 861.3 in stage 0.0 (TID 2925, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 861, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 785.2 in stage 0.0 (TID 2568) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1564] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 785.3 in stage 0.0 (TID 2926, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 785, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 526.5 in stage 0.0 (TID 2534) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1565] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 526.6 in stage 0.0 (TID 2927, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 526, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 206.8 in stage 0.0 (TID 2612) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1566] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 206.9 in stage 0.0 (TID 2928, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 227.5 in stage 0.0 (TID 2329) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1567] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 227.6 in stage 0.0 (TID 2929, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 227, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 187.8 in stage 0.0 (TID 2658) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1568] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 187.9 in stage 0.0 (TID 2930, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 539.4 in stage 0.0 (TID 2433) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1569] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 539.5 in stage 0.0 (TID 2931, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 539, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Finished task 888.0 in stage 0.0 (TID 2226) in 3518 ms on jg1-w-9.c.maclab-ukbb.internal (executor 77) (536/30000) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 930.0 in stage 0.0 (TID 2932, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 930, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 0.12 in stage 0.0 (TID 2641) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1570] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 0.13 in stage 0.0 (TID 2933, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 699.4 in stage 0.0 (TID 2639) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1571] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 699.5 in stage 0.0 (TID 2934, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 713.4 in stage 0.0 (TID 2475) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1572] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 713.5 in stage 0.0 (TID 2935, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 822.1 in stage 0.0 (TID 2049) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1573] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 822.2 in stage 0.0 (TID 2936, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 822, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 820.2 in stage 0.0 (TID 2502) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1574] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 820.3 in stage 0.0 (TID 2937, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 820, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 225.7 in stage 0.0 (TID 2583) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1575] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 225.8 in stage 0.0 (TID 2938, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 81.8 in stage 0.0 (TID 2505) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1576] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 81.9 in stage 0.0 (TID 2939, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 19.6 in stage 0.0 (TID 2488) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1577] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 19.7 in stage 0.0 (TID 2940, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 428.7 in stage 0.0 (TID 2625) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1578] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 428.8 in stage 0.0 (TID 2941, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 683.4 in stage 0.0 (TID 2623) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1579] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 683.5 in stage 0.0 (TID 2942, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 683, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 113.8 in stage 0.0 (TID 2672) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1580] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 113.9 in stage 0.0 (TID 2943, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 703.3 in stage 0.0 (TID 2595) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1581] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 703.4 in stage 0.0 (TID 2944, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 703, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 931.0 in stage 0.0 (TID 2945, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 931, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 1.11 in stage 0.0 (TID 2592) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1582] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 309.5 in stage 0.0 (TID 2506) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1583] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 309.6 in stage 0.0 (TID 2946, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 309, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 838.2 in stage 0.0 (TID 2423) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1584] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 838.3 in stage 0.0 (TID 2947, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 838, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 612.4 in stage 0.0 (TID 2596) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1585] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 612.5 in stage 0.0 (TID 2948, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 612, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 274.7 in stage 0.0 (TID 2657) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1586] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 274.8 in stage 0.0 (TID 2949, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 57.7 in stage 0.0 (TID 2610) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1587] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 57.8 in stage 0.0 (TID 2950, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 476.6 in stage 0.0 (TID 2615) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1588] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 476.7 in stage 0.0 (TID 2951, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 1.12 in stage 0.0 (TID 2952, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 198.8 in stage 0.0 (TID 2660) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1589] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 198.9 in stage 0.0 (TID 2953, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 275.8 in stage 0.0 (TID 2689) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1590] 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 608.5 in stage 0.0 (TID 2546) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1591] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 608.6 in stage 0.0 (TID 2954, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 667.3 in stage 0.0 (TID 2186) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1592] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 667.4 in stage 0.0 (TID 2955, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 667, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 115.6 in stage 0.0 (TID 2364) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1593] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 115.7 in stage 0.0 (TID 2956, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 115, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 843.2 in stage 0.0 (TID 2540) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1594] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 843.3 in stage 0.0 (TID 2957, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 843, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 834.2 in stage 0.0 (TID 2460) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1595] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 834.3 in stage 0.0 (TID 2958, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 834, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Finished task 905.0 in stage 0.0 (TID 2539) in 2030 ms on jg1-w-64.c.maclab-ukbb.internal (executor 70) (537/30000) 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 275.9 in stage 0.0 (TID 2959, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 517.6 in stage 0.0 (TID 2608) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1596] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 517.7 in stage 0.0 (TID 2960, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 719.5 in stage 0.0 (TID 2702) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1597] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 719.6 in stage 0.0 (TID 2961, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 829.3 in stage 0.0 (TID 2682) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1598] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 829.4 in stage 0.0 (TID 2962, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 829, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 401.5 in stage 0.0 (TID 2637) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1599] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 401.6 in stage 0.0 (TID 2963, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 488.5 in stage 0.0 (TID 2556) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1600] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 488.6 in stage 0.0 (TID 2964, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 20.9 in stage 0.0 (TID 2676) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1601] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 20.10 in stage 0.0 (TID 2965, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 849.2 in stage 0.0 (TID 2624) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1602] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 849.3 in stage 0.0 (TID 2966, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 849, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 399.10 in stage 0.0 (TID 2549) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1603] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 399.11 in stage 0.0 (TID 2967, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 486.6 in stage 0.0 (TID 2653) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1604] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 486.7 in stage 0.0 (TID 2968, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 303.7 in stage 0.0 (TID 2691) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1605] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 303.8 in stage 0.0 (TID 2969, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 438.5 in stage 0.0 (TID 2490) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1606] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 438.6 in stage 0.0 (TID 2970, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 438, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 729.3 in stage 0.0 (TID 2472) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1607] 2020-04-02 15:10:49 TaskSetManager: INFO: Starting task 729.4 in stage 0.0 (TID 2971, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 729, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:49 TaskSetManager: INFO: Lost task 257.8 in stage 0.0 (TID 2709) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1608] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 257.9 in stage 0.0 (TID 2972, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 728.5 in stage 0.0 (TID 2663) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1609] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 728.6 in stage 0.0 (TID 2973, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 932.0 in stage 0.0 (TID 2974, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 932, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 536.5 in stage 0.0 (TID 2567) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1610] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 193.8 in stage 0.0 (TID 2701) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1611] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 193.9 in stage 0.0 (TID 2975, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 158.8 in stage 0.0 (TID 2656) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1612] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 158.9 in stage 0.0 (TID 2976, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 536.6 in stage 0.0 (TID 2977, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 691.3 in stage 0.0 (TID 2547) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1613] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 691.4 in stage 0.0 (TID 2978, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 691, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 141.5 in stage 0.0 (TID 2544) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1614] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 141.6 in stage 0.0 (TID 2979, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 141, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 475.7 in stage 0.0 (TID 2598) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1615] 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 904.0 in stage 0.0 (TID 2522) in 2237 ms on jg1-w-83.c.maclab-ukbb.internal (executor 85) (538/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 475.8 in stage 0.0 (TID 2980, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 933.0 in stage 0.0 (TID 2981, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 933, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 212.7 in stage 0.0 (TID 2525) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1616] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 166.7 in stage 0.0 (TID 2614) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1617] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 166.8 in stage 0.0 (TID 2982, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 520.5 in stage 0.0 (TID 2613) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1618] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 520.6 in stage 0.0 (TID 2983, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 63.9 in stage 0.0 (TID 2703) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1619] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 63.10 in stage 0.0 (TID 2984, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 810.2 in stage 0.0 (TID 2526) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1620] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 810.3 in stage 0.0 (TID 2985, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 810, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 164.6 in stage 0.0 (TID 2515) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1621] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 164.7 in stage 0.0 (TID 2986, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 572.4 in stage 0.0 (TID 2665) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1622] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 572.5 in stage 0.0 (TID 2987, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 572, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 768.3 in stage 0.0 (TID 2622) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1623] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 768.4 in stage 0.0 (TID 2988, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 768, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 767.4 in stage 0.0 (TID 2655) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1624] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 767.5 in stage 0.0 (TID 2989, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 767, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 725.3 in stage 0.0 (TID 2550) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1625] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 725.4 in stage 0.0 (TID 2990, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 725, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 125.6 in stage 0.0 (TID 2605) on jg1-w-66.c.maclab-ukbb.internal, executor 159: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1626] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 125.7 in stage 0.0 (TID 2991, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 217.6 in stage 0.0 (TID 2640) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1627] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 217.7 in stage 0.0 (TID 2992, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 414.7 in stage 0.0 (TID 2548) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1628] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 414.8 in stage 0.0 (TID 2993, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 270.5 in stage 0.0 (TID 2521) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1629] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 270.6 in stage 0.0 (TID 2994, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 270, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 441.7 in stage 0.0 (TID 2666) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1630] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 441.8 in stage 0.0 (TID 2995, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 583.4 in stage 0.0 (TID 2473) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1631] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 583.5 in stage 0.0 (TID 2996, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 583, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 899.0 in stage 0.0 (TID 2412) in 2815 ms on jg1-w-15.c.maclab-ukbb.internal (executor 127) (539/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 212.8 in stage 0.0 (TID 2997, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 202.8 in stage 0.0 (TID 2645) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1632] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 202.9 in stage 0.0 (TID 2998, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 803.3 in stage 0.0 (TID 2606) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1633] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 803.4 in stage 0.0 (TID 2999, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 803, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 360.6 in stage 0.0 (TID 2685) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1634] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 360.7 in stage 0.0 (TID 3000, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 934.0 in stage 0.0 (TID 3001, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 934, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 918.0 in stage 0.0 (TID 2708) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1635] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 124.6 in stage 0.0 (TID 2611) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1636] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 124.7 in stage 0.0 (TID 3002, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 906.0 in stage 0.0 (TID 2558) in 2198 ms on jg1-w-35.c.maclab-ukbb.internal (executor 36) (540/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 918.1 in stage 0.0 (TID 3003, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 918, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 625.5 in stage 0.0 (TID 2593) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1637] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 625.6 in stage 0.0 (TID 3004, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 804.2 in stage 0.0 (TID 2671) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1638] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 804.3 in stage 0.0 (TID 3005, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 804, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 935.0 in stage 0.0 (TID 3006, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 935, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 493.5 in stage 0.0 (TID 2627) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1639] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 497.6 in stage 0.0 (TID 2683) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1640] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 497.7 in stage 0.0 (TID 3007, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 814.3 in stage 0.0 (TID 2591) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1641] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 814.4 in stage 0.0 (TID 3008, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 814, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 596.5 in stage 0.0 (TID 2688) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1642] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 596.6 in stage 0.0 (TID 3009, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 907.0 in stage 0.0 (TID 2565) in 2227 ms on jg1-w-35.c.maclab-ukbb.internal (executor 66) (541/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 493.6 in stage 0.0 (TID 3010, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: WARN: Lost task 806.3 in stage 0.0 (TID 2650, jg1-w-43.c.maclab-ukbb.internal, executor 129): is.hail.utils.HailException: cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64} at is.hail.utils.ErrorHandling$class.fatal(ErrorHandling.scala:9) at is.hail.utils.package$.fatal(package.scala:74) at is.hail.annotations.RegionValueBuilder.setMissing(RegionValueBuilder.scala:210) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:953) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:946) at is.hail.utils.FlipbookIterator$$anon$5.advance(FlipbookIterator.scala:180) at is.hail.utils.StagingIterator.stage(FlipbookIterator.scala:61) at is.hail.utils.StagingIterator.hasNext(FlipbookIterator.scala:71) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:462) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:106) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:102) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:102) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:101) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:101) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:99) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:99) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:97) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:97) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:95) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$.writeSplitRegion(RichContextRDDRegionValue.scala:95) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:901) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:899) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310) at scala.collection.AbstractIterator.to(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289) at scala.collection.AbstractIterator.toArray(Iterator.scala:1334) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 806.4 in stage 0.0 (TID 3011, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 806, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 514.4 in stage 0.0 (TID 2500) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 514.5 in stage 0.0 (TID 3012, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 514, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 591.4 in stage 0.0 (TID 2631) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 591.5 in stage 0.0 (TID 3013, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 591, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 593.6 in stage 0.0 (TID 2726) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 3] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 593.7 in stage 0.0 (TID 3014, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 511.6 in stage 0.0 (TID 2668) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 4] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 511.7 in stage 0.0 (TID 3015, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 442.6 in stage 0.0 (TID 2399) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 5] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 442.7 in stage 0.0 (TID 3016, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 242.6 in stage 0.0 (TID 2698) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 6] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 242.7 in stage 0.0 (TID 3017, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 850.1 in stage 0.0 (TID 2439) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 7] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 850.2 in stage 0.0 (TID 3018, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 850, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 936.0 in stage 0.0 (TID 3019, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 936, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 507.5 in stage 0.0 (TID 2646) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 8] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 780.4 in stage 0.0 (TID 2693) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 9] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 780.5 in stage 0.0 (TID 3020, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 707.5 in stage 0.0 (TID 2740) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 10] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 707.6 in stage 0.0 (TID 3021, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 406.8 in stage 0.0 (TID 2705) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 11] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 406.9 in stage 0.0 (TID 3022, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 885.0 in stage 0.0 (TID 2147) in 4320 ms on jg1-w-89.c.maclab-ukbb.internal (executor 71) (542/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 507.6 in stage 0.0 (TID 3023, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 799.3 in stage 0.0 (TID 2635) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 12] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 799.4 in stage 0.0 (TID 3024, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 799, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 361.5 in stage 0.0 (TID 2626) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 13] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 361.6 in stage 0.0 (TID 3025, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 361, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 628.5 in stage 0.0 (TID 2681) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 14] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 628.6 in stage 0.0 (TID 3026, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 781.4 in stage 0.0 (TID 2764) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 15] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 781.5 in stage 0.0 (TID 3027, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 282.8 in stage 0.0 (TID 2725) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 16] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 282.9 in stage 0.0 (TID 3028, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 901.0 in stage 0.0 (TID 2453) in 2768 ms on jg1-w-56.c.maclab-ukbb.internal (executor 22) (543/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 937.0 in stage 0.0 (TID 3029, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 937, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 938.0 in stage 0.0 (TID 3030, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 938, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 694.5 in stage 0.0 (TID 2713) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 17] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 818.3 in stage 0.0 (TID 2651) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 18] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 818.4 in stage 0.0 (TID 3031, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 818, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 910.0 in stage 0.0 (TID 2581) in 2260 ms on jg1-w-82.c.maclab-ukbb.internal (executor 108) (544/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 694.6 in stage 0.0 (TID 3032, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 746.4 in stage 0.0 (TID 2686) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 19] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 746.5 in stage 0.0 (TID 3033, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 554.6 in stage 0.0 (TID 2642) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 20] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 554.7 in stage 0.0 (TID 3034, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 192.6 in stage 0.0 (TID 2564) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 21] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 192.7 in stage 0.0 (TID 3035, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 913.0 in stage 0.0 (TID 2601) in 2134 ms on jg1-w-70.c.maclab-ukbb.internal (executor 102) (545/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 939.0 in stage 0.0 (TID 3036, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 939, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 91.9 in stage 0.0 (TID 2717) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 22] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 91.10 in stage 0.0 (TID 3037, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 790.3 in stage 0.0 (TID 2716) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 23] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 790.4 in stage 0.0 (TID 3038, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 790, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 908.0 in stage 0.0 (TID 2570) in 2344 ms on jg1-w-63.c.maclab-ukbb.internal (executor 87) (546/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 940.0 in stage 0.0 (TID 3039, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 940, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 848.3 in stage 0.0 (TID 2761) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 24] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 848.4 in stage 0.0 (TID 3040, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 848, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 794.4 in stage 0.0 (TID 2722) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 25] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 794.5 in stage 0.0 (TID 3041, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 794, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 679.4 in stage 0.0 (TID 2670) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 26] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 679.5 in stage 0.0 (TID 3042, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 679, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 909.0 in stage 0.0 (TID 2579) in 2335 ms on jg1-w-78.c.maclab-ukbb.internal (executor 10) (547/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 941.0 in stage 0.0 (TID 3043, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 941, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 348.6 in stage 0.0 (TID 2649) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 27] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 348.7 in stage 0.0 (TID 3044, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 160.6 in stage 0.0 (TID 2700) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 28] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 160.7 in stage 0.0 (TID 3045, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 52.11 in stage 0.0 (TID 2793) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 29] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 52.12 in stage 0.0 (TID 3046, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 710.5 in stage 0.0 (TID 2777) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 30] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 710.6 in stage 0.0 (TID 3047, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 759.4 in stage 0.0 (TID 2680) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 31] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 759.5 in stage 0.0 (TID 3048, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 759, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 142.8 in stage 0.0 (TID 2694) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 32] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 142.9 in stage 0.0 (TID 3049, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 775.3 in stage 0.0 (TID 2620) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 33] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 775.4 in stage 0.0 (TID 3050, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 775, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 942.0 in stage 0.0 (TID 3051, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 942, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 435.7 in stage 0.0 (TID 2675) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 34] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 39.8 in stage 0.0 (TID 2679) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 35] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 39.9 in stage 0.0 (TID 3052, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 828.3 in stage 0.0 (TID 2784) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 36] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 828.4 in stage 0.0 (TID 3053, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 828, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 175.7 in stage 0.0 (TID 2662) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 37] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 175.8 in stage 0.0 (TID 3054, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 721.5 in stage 0.0 (TID 2699) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 38] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 721.6 in stage 0.0 (TID 3055, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 435.8 in stage 0.0 (TID 3056, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 443.8 in stage 0.0 (TID 2750) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 39] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 756.4 in stage 0.0 (TID 2738) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 40] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 756.5 in stage 0.0 (TID 3057, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 516.5 in stage 0.0 (TID 2696) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 41] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 516.6 in stage 0.0 (TID 3058, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 121.7 in stage 0.0 (TID 2724) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 42] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 121.8 in stage 0.0 (TID 3059, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 687.3 in stage 0.0 (TID 2621) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 43] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 687.4 in stage 0.0 (TID 3060, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 687, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 41.6 in stage 0.0 (TID 2394) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 44] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 41.7 in stage 0.0 (TID 3061, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 107.6 in stage 0.0 (TID 2644) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 45] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 107.7 in stage 0.0 (TID 3062, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 495.6 in stage 0.0 (TID 2729) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 46] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 495.7 in stage 0.0 (TID 3063, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 152.6 in stage 0.0 (TID 2731) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 47] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 152.7 in stage 0.0 (TID 3064, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 518.6 in stage 0.0 (TID 2710) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 48] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 518.7 in stage 0.0 (TID 3065, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 601.5 in stage 0.0 (TID 2636) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 49] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 601.6 in stage 0.0 (TID 3066, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 186.7 in stage 0.0 (TID 2719) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 50] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 186.8 in stage 0.0 (TID 3067, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 718.5 in stage 0.0 (TID 2771) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 51] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 718.6 in stage 0.0 (TID 3068, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 654.4 in stage 0.0 (TID 2697) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 52] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 654.5 in stage 0.0 (TID 3069, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 654, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 513.7 in stage 0.0 (TID 2632) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 53] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 513.8 in stage 0.0 (TID 3070, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 327.6 in stage 0.0 (TID 2758) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 54] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 327.7 in stage 0.0 (TID 3071, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 289.7 in stage 0.0 (TID 2754) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 55] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 289.8 in stage 0.0 (TID 3072, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 846.3 in stage 0.0 (TID 2783) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 56] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 846.4 in stage 0.0 (TID 3073, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 846, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 878.2 in stage 0.0 (TID 2776) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 57] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 878.3 in stage 0.0 (TID 3074, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 878, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 218.6 in stage 0.0 (TID 2633) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 58] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 218.7 in stage 0.0 (TID 3075, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 817.3 in stage 0.0 (TID 2749) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 59] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 817.4 in stage 0.0 (TID 3076, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 817, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 903.1 in stage 0.0 (TID 2792) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 60] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 903.2 in stage 0.0 (TID 3077, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 903, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 355.8 in stage 0.0 (TID 2760) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 61] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 355.9 in stage 0.0 (TID 3078, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 762.5 in stage 0.0 (TID 2819) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 62] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 762.6 in stage 0.0 (TID 3079, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 535.6 in stage 0.0 (TID 2692) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 63] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 535.7 in stage 0.0 (TID 3080, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 443.9 in stage 0.0 (TID 3081, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 697.4 in stage 0.0 (TID 2728) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 64] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 697.5 in stage 0.0 (TID 3082, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 697, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 461.5 in stage 0.0 (TID 2578) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 65] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 582.4 in stage 0.0 (TID 2566) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 66] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 582.5 in stage 0.0 (TID 3083, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 582, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 330.4 in stage 0.0 (TID 2661) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 67] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 330.5 in stage 0.0 (TID 3084, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 330, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 704.4 in stage 0.0 (TID 2654) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 68] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 704.5 in stage 0.0 (TID 3085, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 704, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 712.2 in stage 0.0 (TID 2634) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 69] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 712.3 in stage 0.0 (TID 3086, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 712, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 106.7 in stage 0.0 (TID 2628) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 70] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 106.8 in stage 0.0 (TID 3087, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 241.5 in stage 0.0 (TID 2618) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 71] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 241.6 in stage 0.0 (TID 3088, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 241, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 418.7 in stage 0.0 (TID 2574) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 72] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 418.8 in stage 0.0 (TID 3089, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 53.10 in stage 0.0 (TID 2798) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 73] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 53.11 in stage 0.0 (TID 3090, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 673.5 in stage 0.0 (TID 2736) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 74] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 673.6 in stage 0.0 (TID 3091, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 624.4 in stage 0.0 (TID 2706) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 75] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 624.5 in stage 0.0 (TID 3092, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 624, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 366.6 in stage 0.0 (TID 2730) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 76] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 366.7 in stage 0.0 (TID 3093, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 51.7 in stage 0.0 (TID 2751) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 77] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 51.8 in stage 0.0 (TID 3094, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 715.4 in stage 0.0 (TID 2664) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 78] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 715.5 in stage 0.0 (TID 3095, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 715, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 209.7 in stage 0.0 (TID 2659) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 79] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 209.8 in stage 0.0 (TID 3096, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 224.6 in stage 0.0 (TID 2687) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 80] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 224.7 in stage 0.0 (TID 3097, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 779.3 in stage 0.0 (TID 2742) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 81] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 779.4 in stage 0.0 (TID 3098, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 779, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 273.5 in stage 0.0 (TID 2638) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 82] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 273.6 in stage 0.0 (TID 3099, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 273, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 201.8 in stage 0.0 (TID 2734) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 83] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 201.9 in stage 0.0 (TID 3100, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 62.6 in stage 0.0 (TID 2629) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 84] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 62.7 in stage 0.0 (TID 3101, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 793.3 in stage 0.0 (TID 2741) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 85] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 793.4 in stage 0.0 (TID 3102, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 793, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 461.6 in stage 0.0 (TID 3103, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 461, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 758.4 in stage 0.0 (TID 2825) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 86] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 372.5 in stage 0.0 (TID 2721) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 87] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 372.6 in stage 0.0 (TID 3104, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 709.5 in stage 0.0 (TID 2806) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 88] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 709.6 in stage 0.0 (TID 3105, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 865.0 in stage 0.0 (TID 1964) in 5626 ms on jg1-w-68.c.maclab-ukbb.internal (executor 64) (548/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 758.5 in stage 0.0 (TID 3106, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 758, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 351.8 in stage 0.0 (TID 2813) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 89] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 351.9 in stage 0.0 (TID 3107, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 943.0 in stage 0.0 (TID 3108, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 943, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 47.9 in stage 0.0 (TID 2757) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 90] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 165.7 in stage 0.0 (TID 2739) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 91] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 165.8 in stage 0.0 (TID 3109, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 631.4 in stage 0.0 (TID 2678) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 92] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 631.5 in stage 0.0 (TID 3110, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 631, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 47.10 in stage 0.0 (TID 3111, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 276.7 in stage 0.0 (TID 2735) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 93] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 276.8 in stage 0.0 (TID 3112, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 449.9 in stage 0.0 (TID 2803) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 94] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 777.4 in stage 0.0 (TID 2790) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 95] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 777.5 in stage 0.0 (TID 3113, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 31.8 in stage 0.0 (TID 2712) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 96] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 31.9 in stage 0.0 (TID 3114, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 423.9 in stage 0.0 (TID 2781) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 97] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 423.10 in stage 0.0 (TID 3115, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 644.5 in stage 0.0 (TID 2797) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 98] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 644.6 in stage 0.0 (TID 3116, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 80.5 in stage 0.0 (TID 2240) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 99] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 80.6 in stage 0.0 (TID 3117, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 80, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 415.9 in stage 0.0 (TID 2773) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 100] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 415.10 in stage 0.0 (TID 3118, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 449.10 in stage 0.0 (TID 3119, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 916.0 in stage 0.0 (TID 2669) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 101] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 75.9 in stage 0.0 (TID 2743) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 102] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 75.10 in stage 0.0 (TID 3120, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 153.7 in stage 0.0 (TID 2769) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 103] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 153.8 in stage 0.0 (TID 3121, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 736.4 in stage 0.0 (TID 2804) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 104] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 736.5 in stage 0.0 (TID 3122, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 915.0 in stage 0.0 (TID 2617) in 2479 ms on jg1-w-10.c.maclab-ukbb.internal (executor 185) (549/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 916.1 in stage 0.0 (TID 3123, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 916, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Finished task 914.0 in stage 0.0 (TID 2616) in 2485 ms on jg1-w-73.c.maclab-ukbb.internal (executor 97) (550/30000) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 944.0 in stage 0.0 (TID 3124, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 944, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 426.9 in stage 0.0 (TID 2852) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 105] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 426.10 in stage 0.0 (TID 3125, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 945.0 in stage 0.0 (TID 3126, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 945, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 346.6 in stage 0.0 (TID 2720) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 106] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 346.7 in stage 0.0 (TID 3127, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 568.5 in stage 0.0 (TID 2795) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 107] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 170.8 in stage 0.0 (TID 2820) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 108] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 170.9 in stage 0.0 (TID 3128, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 594.5 in stage 0.0 (TID 2723) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 109] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 594.6 in stage 0.0 (TID 3129, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 568.6 in stage 0.0 (TID 3130, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 917.0 in stage 0.0 (TID 2684) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 110] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 854.1 in stage 0.0 (TID 2420) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 111] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 854.2 in stage 0.0 (TID 3131, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 854, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 405.5 in stage 0.0 (TID 2459) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 112] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 405.6 in stage 0.0 (TID 3132, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 405, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 783.4 in stage 0.0 (TID 2785) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 113] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 783.5 in stage 0.0 (TID 3133, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 783, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 917.1 in stage 0.0 (TID 3134, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 917, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 764.4 in stage 0.0 (TID 2759) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 114] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 58.10 in stage 0.0 (TID 2823) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 115] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 58.11 in stage 0.0 (TID 3135, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 796.3 in stage 0.0 (TID 2786) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 116] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 796.4 in stage 0.0 (TID 3136, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 796, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 698.4 in stage 0.0 (TID 2619) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 117] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 698.5 in stage 0.0 (TID 3137, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 698, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 542.3 in stage 0.0 (TID 2212) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 118] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 542.4 in stage 0.0 (TID 3138, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 542, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 764.5 in stage 0.0 (TID 3139, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 764, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 400.6 in stage 0.0 (TID 2867) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 119] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 54.5 in stage 0.0 (TID 2677) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 120] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 54.6 in stage 0.0 (TID 3140, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 54, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 609.6 in stage 0.0 (TID 2857) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 121] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 609.7 in stage 0.0 (TID 3141, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 425.7 in stage 0.0 (TID 2811) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 122] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 425.8 in stage 0.0 (TID 3142, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 634.4 in stage 0.0 (TID 2695) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 123] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 634.5 in stage 0.0 (TID 3143, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 634, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 424.5 in stage 0.0 (TID 2727) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 124] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 424.6 in stage 0.0 (TID 3144, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 424, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 400.7 in stage 0.0 (TID 3145, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 409.8 in stage 0.0 (TID 2801) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 125] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 248.7 in stage 0.0 (TID 2780) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 126] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 248.8 in stage 0.0 (TID 3146, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 727.5 in stage 0.0 (TID 2791) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 127] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 727.6 in stage 0.0 (TID 3147, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 427.7 in stage 0.0 (TID 2718) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 128] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 427.8 in stage 0.0 (TID 3148, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 310.8 in stage 0.0 (TID 2878) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 129] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 310.9 in stage 0.0 (TID 3149, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 409.9 in stage 0.0 (TID 3150, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 496.7 in stage 0.0 (TID 2752) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 130] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 716.4 in stage 0.0 (TID 2809) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 131] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 716.5 in stage 0.0 (TID 3151, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 716, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 157.10 in stage 0.0 (TID 2775) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 132] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 157.11 in stage 0.0 (TID 3152, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 496.8 in stage 0.0 (TID 3153, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 840.3 in stage 0.0 (TID 2787) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 133] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 392.7 in stage 0.0 (TID 2807) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 134] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 392.8 in stage 0.0 (TID 3154, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 840.4 in stage 0.0 (TID 3155, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 840, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 477.3 in stage 0.0 (TID 1711) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 135] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 334.7 in stage 0.0 (TID 2872) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 136] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 334.8 in stage 0.0 (TID 3156, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 847.3 in stage 0.0 (TID 2732) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 137] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 847.4 in stage 0.0 (TID 3157, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 847, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 109.7 in stage 0.0 (TID 2704) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 138] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 109.8 in stage 0.0 (TID 3158, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 247.8 in stage 0.0 (TID 2876) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 139] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 247.9 in stage 0.0 (TID 3159, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 188.8 in stage 0.0 (TID 2877) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 140] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 188.9 in stage 0.0 (TID 3160, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 477.4 in stage 0.0 (TID 3161, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 477, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 281.8 in stage 0.0 (TID 2836) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 141] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 460.6 in stage 0.0 (TID 2812) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 142] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 460.7 in stage 0.0 (TID 3162, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 659.2 in stage 0.0 (TID 2799) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 143] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 659.3 in stage 0.0 (TID 3163, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 659, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 791.4 in stage 0.0 (TID 2707) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 144] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 791.5 in stage 0.0 (TID 3164, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 791, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 584.6 in stage 0.0 (TID 2800) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 145] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 584.7 in stage 0.0 (TID 3165, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 345.7 in stage 0.0 (TID 2841) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 146] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 345.8 in stage 0.0 (TID 3166, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 281.9 in stage 0.0 (TID 3167, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 191.7 in stage 0.0 (TID 2767) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 147] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 765.4 in stage 0.0 (TID 2838) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 148] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 765.5 in stage 0.0 (TID 3168, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 765, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 140.7 in stage 0.0 (TID 2802) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 149] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 140.8 in stage 0.0 (TID 3169, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 280.6 in stage 0.0 (TID 2690) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 150] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 280.7 in stage 0.0 (TID 3170, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 776.4 in stage 0.0 (TID 2842) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 151] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 776.5 in stage 0.0 (TID 3171, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 776, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 681.3 in stage 0.0 (TID 2452) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 152] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 681.4 in stage 0.0 (TID 3172, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 681, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 422.6 in stage 0.0 (TID 2714) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 153] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 422.7 in stage 0.0 (TID 3173, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 195.9 in stage 0.0 (TID 2796) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 154] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 195.10 in stage 0.0 (TID 3174, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 553.3 in stage 0.0 (TID 2647) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 155] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 553.4 in stage 0.0 (TID 3175, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 553, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 839.2 in stage 0.0 (TID 2737) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 156] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 839.3 in stage 0.0 (TID 3176, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 839, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 515.5 in stage 0.0 (TID 2674) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 157] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 515.6 in stage 0.0 (TID 3177, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 515, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 358.5 in stage 0.0 (TID 2733) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 158] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 358.6 in stage 0.0 (TID 3178, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 358, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 487.8 in stage 0.0 (TID 2873) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 159] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 487.9 in stage 0.0 (TID 3179, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 742.5 in stage 0.0 (TID 2862) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 160] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 742.6 in stage 0.0 (TID 3180, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 143.8 in stage 0.0 (TID 2890) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 161] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 143.9 in stage 0.0 (TID 3181, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 655.5 in stage 0.0 (TID 2745) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 162] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 655.6 in stage 0.0 (TID 3182, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 655, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 614.4 in stage 0.0 (TID 2854) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 163] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 614.5 in stage 0.0 (TID 3183, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 191.8 in stage 0.0 (TID 3184, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 774.4 in stage 0.0 (TID 2881) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 164] 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 519.7 in stage 0.0 (TID 2908) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 165] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 519.8 in stage 0.0 (TID 3185, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 408.10 in stage 0.0 (TID 2849) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 166] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 408.11 in stage 0.0 (TID 3186, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 49.8 in stage 0.0 (TID 2822) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 167] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 49.9 in stage 0.0 (TID 3187, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 812.3 in stage 0.0 (TID 2778) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 168] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 812.4 in stage 0.0 (TID 3188, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 812, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 156.9 in stage 0.0 (TID 2870) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 169] 2020-04-02 15:10:50 TaskSetManager: INFO: Starting task 156.10 in stage 0.0 (TID 3189, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:50 TaskSetManager: INFO: Lost task 862.2 in stage 0.0 (TID 2843) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 170] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 862.3 in stage 0.0 (TID 3190, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 862, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 592.6 in stage 0.0 (TID 2895) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 171] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 592.7 in stage 0.0 (TID 3191, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 407.8 in stage 0.0 (TID 2772) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 172] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 407.9 in stage 0.0 (TID 3192, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 290.5 in stage 0.0 (TID 2839) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 173] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 290.6 in stage 0.0 (TID 3193, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 290, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 774.5 in stage 0.0 (TID 3194, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 774, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 215.4 in stage 0.0 (TID 2603) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 174] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 350.5 in stage 0.0 (TID 2652) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 175] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 350.6 in stage 0.0 (TID 3195, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 350, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 196.7 in stage 0.0 (TID 2834) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 176] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 196.8 in stage 0.0 (TID 3196, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 784.2 in stage 0.0 (TID 2816) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 177] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 784.3 in stage 0.0 (TID 3197, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 784, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 215.5 in stage 0.0 (TID 3198, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 215, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 277.7 in stage 0.0 (TID 2912) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 178] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 277.8 in stage 0.0 (TID 3199, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 778.3 in stage 0.0 (TID 2748) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 179] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 155.6 in stage 0.0 (TID 2667) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 180] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 155.7 in stage 0.0 (TID 3200, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 155, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 326.5 in stage 0.0 (TID 2630) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 181] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 326.6 in stage 0.0 (TID 3201, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 326, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 856.3 in stage 0.0 (TID 2884) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 182] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 856.4 in stage 0.0 (TID 3202, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 856, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 532.4 in stage 0.0 (TID 2461) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 183] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 532.5 in stage 0.0 (TID 3203, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 532, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 808.3 in stage 0.0 (TID 2840) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 184] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 808.4 in stage 0.0 (TID 3204, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 808, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 335.7 in stage 0.0 (TID 2855) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 185] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 335.8 in stage 0.0 (TID 3205, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 607.4 in stage 0.0 (TID 2673) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 186] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 607.5 in stage 0.0 (TID 3206, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 607, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 185.8 in stage 0.0 (TID 2885) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 187] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 185.9 in stage 0.0 (TID 3207, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 333.8 in stage 0.0 (TID 2880) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 188] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 333.9 in stage 0.0 (TID 3208, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 128.6 in stage 0.0 (TID 2788) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 189] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 128.7 in stage 0.0 (TID 3209, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 778.4 in stage 0.0 (TID 3210, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 778, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 173.6 in stage 0.0 (TID 2746) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 190] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 173.7 in stage 0.0 (TID 3211, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 492.6 in stage 0.0 (TID 2805) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 191] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 690.5 in stage 0.0 (TID 2886) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 192] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 690.6 in stage 0.0 (TID 3212, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 521.5 in stage 0.0 (TID 2829) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 193] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 521.6 in stage 0.0 (TID 3213, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 521, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 492.7 in stage 0.0 (TID 3214, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 154.13 in stage 0.0 (TID 2916) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 194] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 444.8 in stage 0.0 (TID 2900) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 195] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 444.9 in stage 0.0 (TID 3215, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 154.14 in stage 0.0 (TID 3216, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Finished task 911.0 in stage 0.0 (TID 2587) in 3013 ms on jg1-w-48.c.maclab-ukbb.internal (executor 67) (551/30000) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 288.7 in stage 0.0 (TID 2755) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 196] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 288.8 in stage 0.0 (TID 3217, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 852.3 in stage 0.0 (TID 2818) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 197] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 852.4 in stage 0.0 (TID 3218, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 852, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 946.0 in stage 0.0 (TID 3219, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 946, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 786.2 in stage 0.0 (TID 2285) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 198] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 786.3 in stage 0.0 (TID 3220, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 786, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 167.9 in stage 0.0 (TID 2861) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 199] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 347.7 in stage 0.0 (TID 2835) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 200] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 347.8 in stage 0.0 (TID 3221, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 504.8 in stage 0.0 (TID 2824) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 201] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 504.9 in stage 0.0 (TID 3222, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 50.8 in stage 0.0 (TID 2909) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 202] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 50.9 in stage 0.0 (TID 3223, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 167.10 in stage 0.0 (TID 3224, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 657.4 in stage 0.0 (TID 2851) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 203] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 544.7 in stage 0.0 (TID 2893) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 204] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 544.8 in stage 0.0 (TID 3225, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 459.7 in stage 0.0 (TID 2850) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 205] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 459.8 in stage 0.0 (TID 3226, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 439.7 in stage 0.0 (TID 2847) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 206] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 439.8 in stage 0.0 (TID 3227, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 670.3 in stage 0.0 (TID 2768) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 207] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 670.4 in stage 0.0 (TID 3228, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 670, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 657.5 in stage 0.0 (TID 3229, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 657, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 197.7 in stage 0.0 (TID 2879) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 208] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 0.13 in stage 0.0 (TID 2933) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 209] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 0.14 in stage 0.0 (TID 3230, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 711.4 in stage 0.0 (TID 2856) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 210] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 711.5 in stage 0.0 (TID 3231, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 711, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 919.0 in stage 0.0 (TID 2753) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 211] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 919.1 in stage 0.0 (TID 3232, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 919, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 113.9 in stage 0.0 (TID 2943) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 212] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 113.10 in stage 0.0 (TID 3233, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 275.9 in stage 0.0 (TID 2959) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 213] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 275.10 in stage 0.0 (TID 3234, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 354.7 in stage 0.0 (TID 2817) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 214] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 354.8 in stage 0.0 (TID 3235, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 627.6 in stage 0.0 (TID 2896) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 215] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 627.7 in stage 0.0 (TID 3236, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 660.5 in stage 0.0 (TID 2833) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 216] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 660.6 in stage 0.0 (TID 3237, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 660, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 585.5 in stage 0.0 (TID 2815) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 217] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 585.6 in stage 0.0 (TID 3238, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 585, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 331.8 in stage 0.0 (TID 2845) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 218] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 331.9 in stage 0.0 (TID 3239, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 454.5 in stage 0.0 (TID 2744) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 219] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 454.6 in stage 0.0 (TID 3240, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 454, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 198.9 in stage 0.0 (TID 2953) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 220] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 198.10 in stage 0.0 (TID 3241, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 821.4 in stage 0.0 (TID 2911) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 221] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 821.5 in stage 0.0 (TID 3242, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 197.8 in stage 0.0 (TID 3243, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 220.9 in stage 0.0 (TID 2914) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 222] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 719.6 in stage 0.0 (TID 2961) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 223] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 719.7 in stage 0.0 (TID 3244, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 829.4 in stage 0.0 (TID 2962) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 224] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 829.5 in stage 0.0 (TID 3245, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 829, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 543.6 in stage 0.0 (TID 2894) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 225] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 543.7 in stage 0.0 (TID 3246, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 567.5 in stage 0.0 (TID 2892) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 226] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 567.6 in stage 0.0 (TID 3247, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 567, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 744.5 in stage 0.0 (TID 2904) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 227] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 744.6 in stage 0.0 (TID 3248, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 668.4 in stage 0.0 (TID 2888) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 228] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 668.5 in stage 0.0 (TID 3249, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 668, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 855.3 in stage 0.0 (TID 2907) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 229] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 855.4 in stage 0.0 (TID 3250, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 855, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 849.3 in stage 0.0 (TID 2966) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 230] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 849.4 in stage 0.0 (TID 3251, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 849, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 368.5 in stage 0.0 (TID 2794) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 231] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 368.6 in stage 0.0 (TID 3252, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 368, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 220.10 in stage 0.0 (TID 3253, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 390.6 in stage 0.0 (TID 2882) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 232] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 505.7 in stage 0.0 (TID 2869) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 233] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 505.8 in stage 0.0 (TID 3254, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 340.6 in stage 0.0 (TID 2887) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 234] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 340.7 in stage 0.0 (TID 3255, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 390.7 in stage 0.0 (TID 3256, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 502.7 in stage 0.0 (TID 2858) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 235] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 653.5 in stage 0.0 (TID 2898) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 236] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 653.6 in stage 0.0 (TID 3257, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 653, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 713.5 in stage 0.0 (TID 2935) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 237] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 713.6 in stage 0.0 (TID 3258, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 842.3 in stage 0.0 (TID 2832) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 238] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 842.4 in stage 0.0 (TID 3259, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 842, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 502.8 in stage 0.0 (TID 3260, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 162.6 in stage 0.0 (TID 2859) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 239] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 699.5 in stage 0.0 (TID 2934) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 240] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 699.6 in stage 0.0 (TID 3261, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 299.5 in stage 0.0 (TID 2774) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 241] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 299.6 in stage 0.0 (TID 3262, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 299, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 274.8 in stage 0.0 (TID 2949) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 242] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 274.9 in stage 0.0 (TID 3263, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 187.9 in stage 0.0 (TID 2930) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 243] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 187.10 in stage 0.0 (TID 3264, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 578.5 in stage 0.0 (TID 2765) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 244] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 578.6 in stage 0.0 (TID 3265, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 578, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 162.7 in stage 0.0 (TID 3266, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 162, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 478.7 in stage 0.0 (TID 2866) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 245] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 205.8 in stage 0.0 (TID 2828) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 246] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 205.9 in stage 0.0 (TID 3267, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 478.8 in stage 0.0 (TID 3268, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 838.3 in stage 0.0 (TID 2947) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 247] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 728.6 in stage 0.0 (TID 2973) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 248] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 728.7 in stage 0.0 (TID 3269, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 206.9 in stage 0.0 (TID 2928) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 249] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 206.10 in stage 0.0 (TID 3270, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Finished task 922.0 in stage 0.0 (TID 2766) in 2348 ms on jg1-w-59.c.maclab-ukbb.internal (executor 164) (552/30000) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 838.4 in stage 0.0 (TID 3271, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 838, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 292.6 in stage 0.0 (TID 2920) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 250] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 292.7 in stage 0.0 (TID 3272, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 861.3 in stage 0.0 (TID 2925) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 251] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 861.4 in stage 0.0 (TID 3273, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 861, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 193.9 in stage 0.0 (TID 2975) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 252] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 193.10 in stage 0.0 (TID 3274, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 598.7 in stage 0.0 (TID 2899) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 253] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 598.8 in stage 0.0 (TID 3275, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 880.2 in stage 0.0 (TID 2831) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 254] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 880.3 in stage 0.0 (TID 3276, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 880, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 947.0 in stage 0.0 (TID 3277, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 947, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 680.6 in stage 0.0 (TID 2902) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 255] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 702.4 in stage 0.0 (TID 2864) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 256] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 702.5 in stage 0.0 (TID 3278, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 702, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 597.6 in stage 0.0 (TID 2848) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 257] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 597.7 in stage 0.0 (TID 3279, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 194.9 in stage 0.0 (TID 2830) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 258] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 194.10 in stage 0.0 (TID 3280, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 489.6 in stage 0.0 (TID 2915) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 259] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 489.7 in stage 0.0 (TID 3281, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 1.12 in stage 0.0 (TID 2952) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 260] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 1.13 in stage 0.0 (TID 3282, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 541.5 in stage 0.0 (TID 2919) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 261] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 541.6 in stage 0.0 (TID 3283, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 541, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 680.7 in stage 0.0 (TID 3284, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 63.10 in stage 0.0 (TID 2984) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 262] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 588.6 in stage 0.0 (TID 2918) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 263] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 588.7 in stage 0.0 (TID 3285, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 588, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 111.7 in stage 0.0 (TID 2770) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 264] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 111.8 in stage 0.0 (TID 3286, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 63.11 in stage 0.0 (TID 3287, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 834.3 in stage 0.0 (TID 2958) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 265] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 246.7 in stage 0.0 (TID 2844) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 266] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 246.8 in stage 0.0 (TID 3288, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 834.4 in stage 0.0 (TID 3289, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 834, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 474.7 in stage 0.0 (TID 2913) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 267] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 474.8 in stage 0.0 (TID 3290, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 151.9 in stage 0.0 (TID 2906) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 268] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 658.5 in stage 0.0 (TID 2711) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 269] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 658.6 in stage 0.0 (TID 3291, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 658, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 593.7 in stage 0.0 (TID 3014) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 270] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 593.8 in stage 0.0 (TID 3292, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 428.8 in stage 0.0 (TID 2941) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 271] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 428.9 in stage 0.0 (TID 3293, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 572.5 in stage 0.0 (TID 2987) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 272] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 572.6 in stage 0.0 (TID 3294, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 572, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 399.11 in stage 0.0 (TID 2967) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 273] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 399.12 in stage 0.0 (TID 3295, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 620.4 in stage 0.0 (TID 2846) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 274] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 620.5 in stage 0.0 (TID 3296, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 620, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 151.10 in stage 0.0 (TID 3297, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 391.4 in stage 0.0 (TID 2782) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 275] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 506.7 in stage 0.0 (TID 2905) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 276] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 506.8 in stage 0.0 (TID 3298, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 526.6 in stage 0.0 (TID 2927) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 277] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 526.7 in stage 0.0 (TID 3299, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 526, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 115.7 in stage 0.0 (TID 2956) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 278] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 115.8 in stage 0.0 (TID 3300, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 115, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 785.3 in stage 0.0 (TID 2926) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 279] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 785.4 in stage 0.0 (TID 3301, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 785, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 798.3 in stage 0.0 (TID 2901) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 280] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 798.4 in stage 0.0 (TID 3302, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 798, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 475.8 in stage 0.0 (TID 2980) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 281] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 475.9 in stage 0.0 (TID 3303, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 391.5 in stage 0.0 (TID 3304, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 391, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 158.9 in stage 0.0 (TID 2976) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 282] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 486.7 in stage 0.0 (TID 2968) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 283] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 486.8 in stage 0.0 (TID 3305, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 91.10 in stage 0.0 (TID 3037) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 284] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 91.11 in stage 0.0 (TID 3306, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 166.8 in stage 0.0 (TID 2982) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 285] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 166.9 in stage 0.0 (TID 3307, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 780.5 in stage 0.0 (TID 3020) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 286] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 780.6 in stage 0.0 (TID 3308, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 359.6 in stage 0.0 (TID 2863) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 287] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 359.7 in stage 0.0 (TID 3309, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 789.4 in stage 0.0 (TID 2747) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 288] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 789.5 in stage 0.0 (TID 3310, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 27.8 in stage 0.0 (TID 2903) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 289] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 27.9 in stage 0.0 (TID 3311, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 225.8 in stage 0.0 (TID 2938) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 290] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 225.9 in stage 0.0 (TID 3312, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 158.10 in stage 0.0 (TID 3313, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 918.1 in stage 0.0 (TID 3003) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 291] 2020-04-02 15:10:51 TaskSetManager: INFO: Finished task 925.0 in stage 0.0 (TID 2814) in 2395 ms on jg1-w-33.c.maclab-ukbb.internal (executor 140) (553/30000) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 918.2 in stage 0.0 (TID 3314, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 918, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 803.4 in stage 0.0 (TID 2999) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 292] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 803.5 in stage 0.0 (TID 3315, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 803, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 64.7 in stage 0.0 (TID 2891) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 293] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 64.8 in stage 0.0 (TID 3316, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 401.6 in stage 0.0 (TID 2963) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 294] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 401.7 in stage 0.0 (TID 3317, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 843.3 in stage 0.0 (TID 2957) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 295] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 843.4 in stage 0.0 (TID 3318, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 843, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 896.1 in stage 0.0 (TID 2871) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 296] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 896.2 in stage 0.0 (TID 3319, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 896, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 693.3 in stage 0.0 (TID 2715) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 297] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 693.4 in stage 0.0 (TID 3320, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 693, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 863.2 in stage 0.0 (TID 2917) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 298] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 863.3 in stage 0.0 (TID 3321, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 863, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 520.6 in stage 0.0 (TID 2983) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 299] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 520.7 in stage 0.0 (TID 3322, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 730.5 in stage 0.0 (TID 2821) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 300] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 730.6 in stage 0.0 (TID 3323, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 730, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 948.0 in stage 0.0 (TID 3324, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 948, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 398.5 in stage 0.0 (TID 2924) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 301] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 136.7 in stage 0.0 (TID 2853) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 302] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 136.8 in stage 0.0 (TID 3325, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 398.6 in stage 0.0 (TID 3326, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 398, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 761.5 in stage 0.0 (TID 2910) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 303] 2020-04-02 15:10:51 TaskSetManager: INFO: Finished task 884.0 in stage 0.0 (TID 2145) in 5737 ms on jg1-w-15.c.maclab-ukbb.internal (executor 83) (554/30000) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 761.6 in stage 0.0 (TID 3327, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 761, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 625.6 in stage 0.0 (TID 3004) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 304] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 625.7 in stage 0.0 (TID 3328, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 949.0 in stage 0.0 (TID 3329, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 949, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 768.4 in stage 0.0 (TID 2988) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 305] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 612.5 in stage 0.0 (TID 2948) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 306] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 612.6 in stage 0.0 (TID 3330, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 612, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 790.4 in stage 0.0 (TID 3038) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 307] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 790.5 in stage 0.0 (TID 3331, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 790, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 476.7 in stage 0.0 (TID 2951) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 308] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 476.8 in stage 0.0 (TID 3332, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 497.7 in stage 0.0 (TID 3007) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 309] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 497.8 in stage 0.0 (TID 3333, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 781.5 in stage 0.0 (TID 3027) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 310] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 781.6 in stage 0.0 (TID 3334, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 923.0 in stage 0.0 (TID 2789) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 311] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 923.1 in stage 0.0 (TID 3335, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 923, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Finished task 924.0 in stage 0.0 (TID 2810) in 2521 ms on jg1-w-47.c.maclab-ukbb.internal (executor 194) (555/30000) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 768.5 in stage 0.0 (TID 3336, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 768, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 703.4 in stage 0.0 (TID 2944) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 312] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 703.5 in stage 0.0 (TID 3337, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 703, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 759.5 in stage 0.0 (TID 3048) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 313] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 759.6 in stage 0.0 (TID 3338, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 759, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 769.5 in stage 0.0 (TID 2875) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 314] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 769.6 in stage 0.0 (TID 3339, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 217.7 in stage 0.0 (TID 2992) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 315] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 217.8 in stage 0.0 (TID 3340, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 257.9 in stage 0.0 (TID 2972) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 316] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 257.10 in stage 0.0 (TID 3341, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 513.8 in stage 0.0 (TID 3070) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 317] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 513.9 in stage 0.0 (TID 3342, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 605.4 in stage 0.0 (TID 2779) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 318] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 605.5 in stage 0.0 (TID 3343, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 605, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 433.5 in stage 0.0 (TID 2520) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 319] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 433.6 in stage 0.0 (TID 3344, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 433, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 491.6 in stage 0.0 (TID 2923) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 320] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 491.7 in stage 0.0 (TID 3345, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 303.8 in stage 0.0 (TID 2969) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 321] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 303.9 in stage 0.0 (TID 3346, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 242.7 in stage 0.0 (TID 3017) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 322] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 242.8 in stage 0.0 (TID 3347, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 500.6 in stage 0.0 (TID 2922) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 323] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 500.7 in stage 0.0 (TID 3348, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 799.4 in stage 0.0 (TID 3024) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 324] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 799.5 in stage 0.0 (TID 3349, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 799, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 202.9 in stage 0.0 (TID 2998) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 325] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 202.10 in stage 0.0 (TID 3350, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 608.6 in stage 0.0 (TID 2954) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 326] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 608.7 in stage 0.0 (TID 3351, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 227.6 in stage 0.0 (TID 2929) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 327] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 227.7 in stage 0.0 (TID 3352, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 227, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 327.7 in stage 0.0 (TID 3071) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 328] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 327.8 in stage 0.0 (TID 3353, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 554.7 in stage 0.0 (TID 3034) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 329] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 554.8 in stage 0.0 (TID 3354, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 950.0 in stage 0.0 (TID 3355, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 950, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 81.9 in stage 0.0 (TID 2939) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 330] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 351.9 in stage 0.0 (TID 3107) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 331] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 351.10 in stage 0.0 (TID 3356, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 435.8 in stage 0.0 (TID 3056) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 332] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 435.9 in stage 0.0 (TID 3357, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Finished task 930.0 in stage 0.0 (TID 2932) in 2066 ms on jg1-w-64.c.maclab-ukbb.internal (executor 40) (556/30000) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 81.10 in stage 0.0 (TID 3358, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 903.2 in stage 0.0 (TID 3077) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 333] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 903.3 in stage 0.0 (TID 3359, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 903, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 828.4 in stage 0.0 (TID 3053) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 334] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 828.5 in stage 0.0 (TID 3360, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 828, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 804.3 in stage 0.0 (TID 3005) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 335] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 804.4 in stage 0.0 (TID 3361, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 804, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 355.9 in stage 0.0 (TID 3078) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 336] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 355.10 in stage 0.0 (TID 3362, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 199.9 in stage 0.0 (TID 2865) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 337] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 199.10 in stage 0.0 (TID 3363, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 818.4 in stage 0.0 (TID 3031) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 338] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 818.5 in stage 0.0 (TID 3364, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 818, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 822.2 in stage 0.0 (TID 2936) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 339] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 822.3 in stage 0.0 (TID 3365, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 822, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 414.8 in stage 0.0 (TID 2993) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 340] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 414.9 in stage 0.0 (TID 3366, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 794.5 in stage 0.0 (TID 3041) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 341] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 794.6 in stage 0.0 (TID 3367, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 794, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 20.10 in stage 0.0 (TID 2965) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 342] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 20.11 in stage 0.0 (TID 3368, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 75.10 in stage 0.0 (TID 3120) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 343] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 75.11 in stage 0.0 (TID 3369, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 511.7 in stage 0.0 (TID 3015) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 344] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 511.8 in stage 0.0 (TID 3370, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Finished task 928.0 in stage 0.0 (TID 2897) in 2341 ms on jg1-w-20.c.maclab-ukbb.internal (executor 3) (557/30000) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 951.0 in stage 0.0 (TID 3371, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 951, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 952.0 in stage 0.0 (TID 3372, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 952, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 878.3 in stage 0.0 (TID 3074) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 345] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 152.7 in stage 0.0 (TID 3064) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 346] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 152.8 in stage 0.0 (TID 3373, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 897.1 in stage 0.0 (TID 2874) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 347] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 897.2 in stage 0.0 (TID 3374, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 897, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 654.5 in stage 0.0 (TID 3069) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 348] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 654.6 in stage 0.0 (TID 3375, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 654, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 142.9 in stage 0.0 (TID 3049) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 349] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 142.10 in stage 0.0 (TID 3376, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 878.4 in stage 0.0 (TID 3377, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 878, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 591.5 in stage 0.0 (TID 3013) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 350] 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 746.5 in stage 0.0 (TID 3033) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 351] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 746.6 in stage 0.0 (TID 3378, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 495.7 in stage 0.0 (TID 3063) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 352] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 495.8 in stage 0.0 (TID 3379, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 846.4 in stage 0.0 (TID 3073) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 353] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 846.5 in stage 0.0 (TID 3380, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 846, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 406.9 in stage 0.0 (TID 3022) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 354] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 406.10 in stage 0.0 (TID 3381, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 39.9 in stage 0.0 (TID 3052) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 355] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 39.10 in stage 0.0 (TID 3382, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 442.7 in stage 0.0 (TID 3016) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 356] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 442.8 in stage 0.0 (TID 3383, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 833.3 in stage 0.0 (TID 2889) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 357] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 833.4 in stage 0.0 (TID 3384, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 833, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 718.6 in stage 0.0 (TID 3068) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 358] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 718.7 in stage 0.0 (TID 3385, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 52.12 in stage 0.0 (TID 3046) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 359] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 52.13 in stage 0.0 (TID 3386, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Lost task 817.4 in stage 0.0 (TID 3076) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 360] 2020-04-02 15:10:51 TaskSetManager: INFO: Starting task 817.5 in stage 0.0 (TID 3387, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 817, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:51 TaskSetManager: INFO: Finished task 927.0 in stage 0.0 (TID 2860) in 2594 ms on jg1-w-30.c.maclab-ukbb.internal (executor 124) (558/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 591.6 in stage 0.0 (TID 3388, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 591, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 673.6 in stage 0.0 (TID 3091) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 361] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 673.7 in stage 0.0 (TID 3389, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 518.7 in stage 0.0 (TID 3065) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 362] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 518.8 in stage 0.0 (TID 3390, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 953.0 in stage 0.0 (TID 3391, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 953, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 508.5 in stage 0.0 (TID 2883) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 363] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 121.8 in stage 0.0 (TID 3059) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 364] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 121.9 in stage 0.0 (TID 3392, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 710.6 in stage 0.0 (TID 3047) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 365] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 710.7 in stage 0.0 (TID 3393, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 921.0 in stage 0.0 (TID 2762) in 3028 ms on jg1-w-96.c.maclab-ukbb.internal (executor 98) (559/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 508.6 in stage 0.0 (TID 3394, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 508, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 596.6 in stage 0.0 (TID 3009) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 366] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 596.7 in stage 0.0 (TID 3395, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 330.5 in stage 0.0 (TID 3084) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 367] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 330.6 in stage 0.0 (TID 3396, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 330, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 517.7 in stage 0.0 (TID 2960) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 368] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 517.8 in stage 0.0 (TID 3397, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 441.8 in stage 0.0 (TID 2995) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 369] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 441.9 in stage 0.0 (TID 3398, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 462.6 in stage 0.0 (TID 2485) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 370] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 462.7 in stage 0.0 (TID 3399, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 462, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 309.6 in stage 0.0 (TID 2946) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 371] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 309.7 in stage 0.0 (TID 3400, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 309, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 628.6 in stage 0.0 (TID 3026) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 372] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 628.7 in stage 0.0 (TID 3401, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 443.9 in stage 0.0 (TID 3081) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 373] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 443.10 in stage 0.0 (TID 3402, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 929.0 in stage 0.0 (TID 2921) in 2313 ms on jg1-w-17.c.maclab-ukbb.internal (executor 166) (560/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 954.0 in stage 0.0 (TID 3403, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 954, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 539.5 in stage 0.0 (TID 2931) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 374] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 539.6 in stage 0.0 (TID 3404, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 539, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 270.6 in stage 0.0 (TID 2994) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 375] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 270.7 in stage 0.0 (TID 3405, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 270, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 644.6 in stage 0.0 (TID 3116) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 376] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 644.7 in stage 0.0 (TID 3406, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 683.5 in stage 0.0 (TID 2942) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 377] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 683.6 in stage 0.0 (TID 3407, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 683, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 756.5 in stage 0.0 (TID 3057) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 378] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 756.6 in stage 0.0 (TID 3408, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 848.4 in stage 0.0 (TID 3040) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 379] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 848.5 in stage 0.0 (TID 3409, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 848, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 212.8 in stage 0.0 (TID 2997) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 380] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 212.9 in stage 0.0 (TID 3410, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 604.5 in stage 0.0 (TID 2868) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 381] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 604.6 in stage 0.0 (TID 3411, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 604, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 736.5 in stage 0.0 (TID 3122) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 382] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 736.6 in stage 0.0 (TID 3412, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 360.7 in stage 0.0 (TID 3000) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 383] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 360.8 in stage 0.0 (TID 3413, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 955.0 in stage 0.0 (TID 3414, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 955, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 536.6 in stage 0.0 (TID 2977) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 384] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 536.7 in stage 0.0 (TID 3415, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 209.8 in stage 0.0 (TID 3096) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 385] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 729.4 in stage 0.0 (TID 2971) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 386] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 729.5 in stage 0.0 (TID 3416, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 729, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 847.4 in stage 0.0 (TID 3157) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 387] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 847.5 in stage 0.0 (TID 3417, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 847, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 169.8 in stage 0.0 (TID 2837) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 388] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 169.9 in stage 0.0 (TID 3418, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 601.6 in stage 0.0 (TID 3066) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 389] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 601.7 in stage 0.0 (TID 3419, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 493.6 in stage 0.0 (TID 3010) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 390] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 493.7 in stage 0.0 (TID 3420, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 568.6 in stage 0.0 (TID 3130) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 391] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 568.7 in stage 0.0 (TID 3421, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 310.9 in stage 0.0 (TID 3149) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 392] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 310.10 in stage 0.0 (TID 3422, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 289.8 in stage 0.0 (TID 3072) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 393] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 289.9 in stage 0.0 (TID 3423, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 53.11 in stage 0.0 (TID 3090) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 394] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 53.12 in stage 0.0 (TID 3424, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 762.6 in stage 0.0 (TID 3079) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 395] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 762.7 in stage 0.0 (TID 3425, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 346.7 in stage 0.0 (TID 3127) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 396] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 346.8 in stage 0.0 (TID 3426, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 814.4 in stage 0.0 (TID 3008) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 397] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 814.5 in stage 0.0 (TID 3427, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 814, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 783.5 in stage 0.0 (TID 3133) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 398] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 783.6 in stage 0.0 (TID 3428, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 783, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 944.0 in stage 0.0 (TID 3124) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 399] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 944.1 in stage 0.0 (TID 3429, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 944, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 535.7 in stage 0.0 (TID 3080) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 400] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 535.8 in stage 0.0 (TID 3430, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 57.8 in stage 0.0 (TID 2950) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 401] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 57.9 in stage 0.0 (TID 3431, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 209.9 in stage 0.0 (TID 3432, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 932.0 in stage 0.0 (TID 2974) in 2170 ms on jg1-w-16.c.maclab-ukbb.internal (executor 34) (561/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 850.2 in stage 0.0 (TID 3018) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 402] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 850.3 in stage 0.0 (TID 3433, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 850, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 415.10 in stage 0.0 (TID 3118) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 403] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 415.11 in stage 0.0 (TID 3434, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 679.5 in stage 0.0 (TID 3042) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 404] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 679.6 in stage 0.0 (TID 3435, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 679, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 247.9 in stage 0.0 (TID 3159) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 405] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 247.10 in stage 0.0 (TID 3436, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 124.7 in stage 0.0 (TID 3002) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 406] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 124.8 in stage 0.0 (TID 3437, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 348.7 in stage 0.0 (TID 3044) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 407] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 348.8 in stage 0.0 (TID 3438, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 806.4 in stage 0.0 (TID 3011) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 408] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 806.5 in stage 0.0 (TID 3439, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 806, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 707.6 in stage 0.0 (TID 3021) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 409] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 707.7 in stage 0.0 (TID 3440, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 56.7 in stage 0.0 (TID 2808) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 410] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 56.8 in stage 0.0 (TID 3441, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 516.6 in stage 0.0 (TID 3058) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 411] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 516.7 in stage 0.0 (TID 3442, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 687.4 in stage 0.0 (TID 3060) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 412] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 687.5 in stage 0.0 (TID 3443, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 687, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 697.5 in stage 0.0 (TID 3082) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 413] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 697.6 in stage 0.0 (TID 3444, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 697, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 47.10 in stage 0.0 (TID 3111) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 414] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 47.11 in stage 0.0 (TID 3445, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 361.6 in stage 0.0 (TID 3025) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 415] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 361.7 in stage 0.0 (TID 3446, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 361, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 170.9 in stage 0.0 (TID 3128) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 416] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 170.10 in stage 0.0 (TID 3447, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 449.10 in stage 0.0 (TID 3119) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 417] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 449.11 in stage 0.0 (TID 3448, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 614.5 in stage 0.0 (TID 3183) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 418] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 614.6 in stage 0.0 (TID 3449, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 900.0 in stage 0.0 (TID 2451) in 4713 ms on jg1-w-34.c.maclab-ukbb.internal (executor 188) (562/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 956.0 in stage 0.0 (TID 3450, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 956, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 201.9 in stage 0.0 (TID 3100) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 419] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 201.10 in stage 0.0 (TID 3451, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 438.6 in stage 0.0 (TID 2970) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 420] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 438.7 in stage 0.0 (TID 3452, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 438, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 51.8 in stage 0.0 (TID 3094) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 421] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 51.9 in stage 0.0 (TID 3453, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 957.0 in stage 0.0 (TID 3454, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 957, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 937.0 in stage 0.0 (TID 3029) in 1959 ms on jg1-w-32.c.maclab-ukbb.internal (executor 57) (563/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 125.7 in stage 0.0 (TID 2991) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 422] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 125.8 in stage 0.0 (TID 3455, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 958.0 in stage 0.0 (TID 3456, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 958, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 704.5 in stage 0.0 (TID 3085) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 423] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 58.11 in stage 0.0 (TID 3135) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 424] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 58.12 in stage 0.0 (TID 3457, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 840.4 in stage 0.0 (TID 3155) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 425] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 840.5 in stage 0.0 (TID 3458, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 840, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 920.0 in stage 0.0 (TID 2756) in 3313 ms on jg1-w-14.c.maclab-ukbb.internal (executor 186) (564/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 704.6 in stage 0.0 (TID 3459, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 704, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 959.0 in stage 0.0 (TID 3460, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 959, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 366.7 in stage 0.0 (TID 3093) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 426] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 3.9 in stage 0.0 (TID 2763) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 427] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 3.10 in stage 0.0 (TID 3461, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 423.10 in stage 0.0 (TID 3115) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 428] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 423.11 in stage 0.0 (TID 3462, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 592.7 in stage 0.0 (TID 3191) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 429] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 592.8 in stage 0.0 (TID 3463, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 584.7 in stage 0.0 (TID 3165) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 430] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 584.8 in stage 0.0 (TID 3464, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 366.8 in stage 0.0 (TID 3465, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 758.5 in stage 0.0 (TID 3106) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 431] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 788.1 in stage 0.0 (TID 1988) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 432] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 788.2 in stage 0.0 (TID 3466, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 788, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 153.8 in stage 0.0 (TID 3121) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 433] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 153.9 in stage 0.0 (TID 3467, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 514.5 in stage 0.0 (TID 3012) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 434] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 514.6 in stage 0.0 (TID 3468, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 514, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 758.6 in stage 0.0 (TID 3469, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 758, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 141.6 in stage 0.0 (TID 2979) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 435] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 667.4 in stage 0.0 (TID 2955) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 436] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 667.5 in stage 0.0 (TID 3470, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 667, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 793.4 in stage 0.0 (TID 3102) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 437] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 793.5 in stage 0.0 (TID 3471, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 793, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 160.7 in stage 0.0 (TID 3045) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 438] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 160.8 in stage 0.0 (TID 3472, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 400.7 in stage 0.0 (TID 3145) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 439] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 400.8 in stage 0.0 (TID 3473, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 765.5 in stage 0.0 (TID 3168) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 440] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 765.6 in stage 0.0 (TID 3474, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 765, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 392.8 in stage 0.0 (TID 3154) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 441] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 392.9 in stage 0.0 (TID 3475, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 583.5 in stage 0.0 (TID 2996) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 442] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 583.6 in stage 0.0 (TID 3476, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 583, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 109.8 in stage 0.0 (TID 3158) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 443] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 109.9 in stage 0.0 (TID 3477, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 709.6 in stage 0.0 (TID 3105) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 444] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 709.7 in stage 0.0 (TID 3478, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 582.5 in stage 0.0 (TID 3083) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 445] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 582.6 in stage 0.0 (TID 3479, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 582, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 624.5 in stage 0.0 (TID 3092) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 446] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 624.6 in stage 0.0 (TID 3480, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 624, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 186.8 in stage 0.0 (TID 3067) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 447] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 186.9 in stage 0.0 (TID 3481, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 810.3 in stage 0.0 (TID 2985) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 448] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 810.4 in stage 0.0 (TID 3482, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 810, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 820.3 in stage 0.0 (TID 2937) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 449] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 820.4 in stage 0.0 (TID 3483, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 820, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 282.9 in stage 0.0 (TID 3028) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 450] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 282.10 in stage 0.0 (TID 3484, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 721.6 in stage 0.0 (TID 3055) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 451] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 721.7 in stage 0.0 (TID 3485, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 694.6 in stage 0.0 (TID 3032) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 452] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 694.7 in stage 0.0 (TID 3486, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 742.6 in stage 0.0 (TID 3180) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 453] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 742.7 in stage 0.0 (TID 3487, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 691.4 in stage 0.0 (TID 2978) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 454] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 691.5 in stage 0.0 (TID 3488, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 691, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 725.4 in stage 0.0 (TID 2990) on jg1-w-66.c.maclab-ukbb.internal, executor 159: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 455] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 725.5 in stage 0.0 (TID 3489, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 725, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 175.8 in stage 0.0 (TID 3054) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 456] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 175.9 in stage 0.0 (TID 3490, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 507.6 in stage 0.0 (TID 3023) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 457] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 507.7 in stage 0.0 (TID 3491, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 141.7 in stage 0.0 (TID 3492, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 141, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 776.5 in stage 0.0 (TID 3171) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 458] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 427.8 in stage 0.0 (TID 3148) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 459] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 427.9 in stage 0.0 (TID 3493, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 488.6 in stage 0.0 (TID 2964) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 460] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 488.7 in stage 0.0 (TID 3494, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 106.8 in stage 0.0 (TID 3087) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 461] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 106.9 in stage 0.0 (TID 3495, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 195.10 in stage 0.0 (TID 3174) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 462] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 195.11 in stage 0.0 (TID 3496, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 655.6 in stage 0.0 (TID 3182) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 463] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 655.7 in stage 0.0 (TID 3497, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 655, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 727.6 in stage 0.0 (TID 3147) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 464] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 727.7 in stage 0.0 (TID 3498, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 345.8 in stage 0.0 (TID 3166) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 465] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 345.9 in stage 0.0 (TID 3499, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 719.7 in stage 0.0 (TID 3244) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 466] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 719.8 in stage 0.0 (TID 3500, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 856.4 in stage 0.0 (TID 3202) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 467] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 856.5 in stage 0.0 (TID 3501, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 856, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 776.6 in stage 0.0 (TID 3502, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 776, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 409.9 in stage 0.0 (TID 3150) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 468] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 408.11 in stage 0.0 (TID 3186) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 469] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 408.12 in stage 0.0 (TID 3503, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 777.5 in stage 0.0 (TID 3113) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 470] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 777.6 in stage 0.0 (TID 3504, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 41.7 in stage 0.0 (TID 3061) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 471] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 41.8 in stage 0.0 (TID 3505, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 409.10 in stage 0.0 (TID 3506, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 164.7 in stage 0.0 (TID 2986) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 472] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 426.10 in stage 0.0 (TID 3125) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 473] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 426.11 in stage 0.0 (TID 3507, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 107.7 in stage 0.0 (TID 3062) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 474] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 107.8 in stage 0.0 (TID 3508, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 334.8 in stage 0.0 (TID 3156) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 475] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 334.9 in stage 0.0 (TID 3509, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 248.8 in stage 0.0 (TID 3146) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 476] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 248.9 in stage 0.0 (TID 3510, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 143.9 in stage 0.0 (TID 3181) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 477] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 143.10 in stage 0.0 (TID 3511, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 164.8 in stage 0.0 (TID 3512, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 54.6 in stage 0.0 (TID 3140) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 478] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 544.8 in stage 0.0 (TID 3225) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 479] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 544.9 in stage 0.0 (TID 3513, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 519.8 in stage 0.0 (TID 3185) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 480] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 519.9 in stage 0.0 (TID 3514, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 854.2 in stage 0.0 (TID 3131) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 481] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 854.3 in stage 0.0 (TID 3515, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 854, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 936.0 in stage 0.0 (TID 3019) in 2285 ms on jg1-w-13.c.maclab-ukbb.internal (executor 55) (565/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 54.7 in stage 0.0 (TID 3516, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 54, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 774.5 in stage 0.0 (TID 3194) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 482] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 774.6 in stage 0.0 (TID 3517, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 774, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 791.5 in stage 0.0 (TID 3164) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 483] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 791.6 in stage 0.0 (TID 3518, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 791, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 167.10 in stage 0.0 (TID 3224) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 484] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 167.11 in stage 0.0 (TID 3519, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 960.0 in stage 0.0 (TID 3520, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 960, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 192.7 in stage 0.0 (TID 3035) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 485] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 192.8 in stage 0.0 (TID 3521, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 764.5 in stage 0.0 (TID 3139) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 486] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 224.7 in stage 0.0 (TID 3097) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 487] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 224.8 in stage 0.0 (TID 3522, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 775.4 in stage 0.0 (TID 3050) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 488] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 775.5 in stage 0.0 (TID 3523, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 775, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 715.5 in stage 0.0 (TID 3095) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 489] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 715.6 in stage 0.0 (TID 3524, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 715, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 609.7 in stage 0.0 (TID 3141) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 490] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 609.8 in stage 0.0 (TID 3525, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 154.14 in stage 0.0 (TID 3216) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 491] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 154.15 in stage 0.0 (TID 3526, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 926.0 in stage 0.0 (TID 2827) in 3300 ms on jg1-w-85.c.maclab-ukbb.internal (executor 63) (566/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 764.6 in stage 0.0 (TID 3527, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 764, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 504.9 in stage 0.0 (TID 3222) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 492] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 504.10 in stage 0.0 (TID 3528, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 961.0 in stage 0.0 (TID 3529, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 961, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 113.10 in stage 0.0 (TID 3233) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 493] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 113.11 in stage 0.0 (TID 3530, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 487.9 in stage 0.0 (TID 3179) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 494] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 157.11 in stage 0.0 (TID 3152) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 495] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 157.12 in stage 0.0 (TID 3531, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 916.1 in stage 0.0 (TID 3123) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 496] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 916.2 in stage 0.0 (TID 3532, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 916, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 198.10 in stage 0.0 (TID 3241) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 497] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 198.11 in stage 0.0 (TID 3533, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 241.6 in stage 0.0 (TID 3088) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 498] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 241.7 in stage 0.0 (TID 3534, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 241, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 941.0 in stage 0.0 (TID 3043) in 2228 ms on jg1-w-50.c.maclab-ukbb.internal (executor 19) (567/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 487.10 in stage 0.0 (TID 3535, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 335.8 in stage 0.0 (TID 3205) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 499] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 335.9 in stage 0.0 (TID 3536, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 165.8 in stage 0.0 (TID 3109) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 500] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 165.9 in stage 0.0 (TID 3537, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 218.7 in stage 0.0 (TID 3075) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 501] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 218.8 in stage 0.0 (TID 3538, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 288.8 in stage 0.0 (TID 3217) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 502] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 288.9 in stage 0.0 (TID 3539, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 962.0 in stage 0.0 (TID 3540, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 962, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 19.7 in stage 0.0 (TID 2940) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 503] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 627.7 in stage 0.0 (TID 3236) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 504] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 627.8 in stage 0.0 (TID 3541, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 50.9 in stage 0.0 (TID 3223) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 505] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 50.10 in stage 0.0 (TID 3542, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 19.8 in stage 0.0 (TID 3543, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 187.10 in stage 0.0 (TID 3264) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 506] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 187.11 in stage 0.0 (TID 3544, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 778.4 in stage 0.0 (TID 3210) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 507] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 492.7 in stage 0.0 (TID 3214) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 508] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 492.8 in stage 0.0 (TID 3545, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 631.5 in stage 0.0 (TID 3110) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 509] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 631.6 in stage 0.0 (TID 3546, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 631, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 424.6 in stage 0.0 (TID 3144) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 510] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 424.7 in stage 0.0 (TID 3547, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 424, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 542.4 in stage 0.0 (TID 3138) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 511] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 542.5 in stage 0.0 (TID 3548, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 542, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 779.4 in stage 0.0 (TID 3098) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 512] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 779.5 in stage 0.0 (TID 3549, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 779, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 459.8 in stage 0.0 (TID 3226) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 513] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 459.9 in stage 0.0 (TID 3550, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 505.8 in stage 0.0 (TID 3254) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 514] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 505.9 in stage 0.0 (TID 3551, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 778.5 in stage 0.0 (TID 3552, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 778, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 943.0 in stage 0.0 (TID 3108) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 515] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 372.6 in stage 0.0 (TID 3104) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 516] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 372.7 in stage 0.0 (TID 3553, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 829.5 in stage 0.0 (TID 3245) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 517] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 829.6 in stage 0.0 (TID 3554, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 829, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 461.6 in stage 0.0 (TID 3103) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 518] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 461.7 in stage 0.0 (TID 3555, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 461, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 418.8 in stage 0.0 (TID 3089) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 519] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 418.9 in stage 0.0 (TID 3556, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 934.0 in stage 0.0 (TID 3001) in 2574 ms on jg1-w-80.c.maclab-ukbb.internal (executor 13) (568/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 943.1 in stage 0.0 (TID 3557, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 943, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 634.5 in stage 0.0 (TID 3143) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 520] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 634.6 in stage 0.0 (TID 3558, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 634, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 963.0 in stage 0.0 (TID 3559, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 963, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 156.10 in stage 0.0 (TID 3189) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 521] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 347.8 in stage 0.0 (TID 3221) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 522] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 347.9 in stage 0.0 (TID 3560, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 31.9 in stage 0.0 (TID 3114) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 523] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 31.10 in stage 0.0 (TID 3561, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 713.6 in stage 0.0 (TID 3258) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 524] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 713.7 in stage 0.0 (TID 3562, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 156.11 in stage 0.0 (TID 3563, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 698.5 in stage 0.0 (TID 3137) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 525] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 712.3 in stage 0.0 (TID 3086) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 526] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 712.4 in stage 0.0 (TID 3564, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 712, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 933.0 in stage 0.0 (TID 2981) in 2739 ms on jg1-w-99.c.maclab-ukbb.internal (executor 30) (569/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 698.6 in stage 0.0 (TID 3565, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 698, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 964.0 in stage 0.0 (TID 3566, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 964, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 965.0 in stage 0.0 (TID 3567, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 965, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 444.9 in stage 0.0 (TID 3215) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 527] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 280.7 in stage 0.0 (TID 3170) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 528] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 188.9 in stage 0.0 (TID 3160) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 529] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 188.10 in stage 0.0 (TID 3568, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 938.0 in stage 0.0 (TID 3030) in 2473 ms on jg1-w-19.c.maclab-ukbb.internal (executor 101) (570/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 280.8 in stage 0.0 (TID 3569, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 839.3 in stage 0.0 (TID 3176) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 530] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 839.4 in stage 0.0 (TID 3570, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 839, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 786.3 in stage 0.0 (TID 3220) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 531] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 786.4 in stage 0.0 (TID 3571, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 786, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 275.10 in stage 0.0 (TID 3234) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 532] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 275.11 in stage 0.0 (TID 3572, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 62.7 in stage 0.0 (TID 3101) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 533] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 62.8 in stage 0.0 (TID 3573, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 855.4 in stage 0.0 (TID 3250) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 534] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 855.5 in stage 0.0 (TID 3574, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 855, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 196.8 in stage 0.0 (TID 3196) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 535] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 196.9 in stage 0.0 (TID 3575, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 405.6 in stage 0.0 (TID 3132) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 536] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 405.7 in stage 0.0 (TID 3576, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 405, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 852.4 in stage 0.0 (TID 3218) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 537] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 852.5 in stage 0.0 (TID 3577, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 852, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 91.11 in stage 0.0 (TID 3306) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 538] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 91.12 in stage 0.0 (TID 3578, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 821.5 in stage 0.0 (TID 3242) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 539] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 821.6 in stage 0.0 (TID 3579, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 838.4 in stage 0.0 (TID 3271) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 540] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 838.5 in stage 0.0 (TID 3580, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 838, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 849.4 in stage 0.0 (TID 3251) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 541] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 849.5 in stage 0.0 (TID 3581, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 849, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 444.10 in stage 0.0 (TID 3582, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 812.4 in stage 0.0 (TID 3188) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 542] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 690.6 in stage 0.0 (TID 3212) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 543] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 690.7 in stage 0.0 (TID 3583, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 681.4 in stage 0.0 (TID 3172) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 544] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 681.5 in stage 0.0 (TID 3584, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 681, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 0.14 in stage 0.0 (TID 3230) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 545] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 0.15 in stage 0.0 (TID 3585, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 744.6 in stage 0.0 (TID 3248) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 546] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 744.7 in stage 0.0 (TID 3586, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 194.10 in stage 0.0 (TID 3280) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 547] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 194.11 in stage 0.0 (TID 3587, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 812.5 in stage 0.0 (TID 3588, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 812, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 670.4 in stage 0.0 (TID 3228) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 548] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 506.8 in stage 0.0 (TID 3298) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 549] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 506.9 in stage 0.0 (TID 3589, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 670.5 in stage 0.0 (TID 3590, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 670, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 680.7 in stage 0.0 (TID 3284) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 550] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 220.10 in stage 0.0 (TID 3253) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 551] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 220.11 in stage 0.0 (TID 3591, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 130.5 in stage 0.0 (TID 2386) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 552] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 130.6 in stage 0.0 (TID 3592, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 130, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 803.5 in stage 0.0 (TID 3315) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 553] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 803.6 in stage 0.0 (TID 3593, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 803, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 407.9 in stage 0.0 (TID 3192) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 554] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 407.10 in stage 0.0 (TID 3594, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 862.3 in stage 0.0 (TID 3190) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 555] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 862.4 in stage 0.0 (TID 3595, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 862, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 206.10 in stage 0.0 (TID 3270) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 556] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 206.11 in stage 0.0 (TID 3596, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 680.8 in stage 0.0 (TID 3597, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 290.6 in stage 0.0 (TID 3193) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 557] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 290.7 in stage 0.0 (TID 3598, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 290, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 422.7 in stage 0.0 (TID 3173) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 558] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 711.5 in stage 0.0 (TID 3231) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 559] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 711.6 in stage 0.0 (TID 3599, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 711, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 422.8 in stage 0.0 (TID 3600, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 333.9 in stage 0.0 (TID 3208) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 560] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 594.6 in stage 0.0 (TID 3129) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 561] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 594.7 in stage 0.0 (TID 3601, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 532.5 in stage 0.0 (TID 3203) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 562] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 532.6 in stage 0.0 (TID 3602, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 532, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 273.6 in stage 0.0 (TID 3099) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 563] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 273.7 in stage 0.0 (TID 3603, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 273, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 185.9 in stage 0.0 (TID 3207) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 564] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 185.10 in stage 0.0 (TID 3604, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 808.4 in stage 0.0 (TID 3204) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 565] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 808.5 in stage 0.0 (TID 3605, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 808, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 333.10 in stage 0.0 (TID 3606, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 861.4 in stage 0.0 (TID 3273) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 566] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 861.5 in stage 0.0 (TID 3607, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 861, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 390.7 in stage 0.0 (TID 3256) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 567] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 919.1 in stage 0.0 (TID 3232) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 568] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 919.2 in stage 0.0 (TID 3608, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 919, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 931.0 in stage 0.0 (TID 2945) in 3091 ms on jg1-w-57.c.maclab-ukbb.internal (executor 151) (571/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 390.8 in stage 0.0 (TID 3609, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 966.0 in stage 0.0 (TID 3610, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 966, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 781.6 in stage 0.0 (TID 3334) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 569] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 475.9 in stage 0.0 (TID 3303) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 570] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 475.10 in stage 0.0 (TID 3611, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 543.7 in stage 0.0 (TID 3246) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 571] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 543.8 in stage 0.0 (TID 3612, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Finished task 940.0 in stage 0.0 (TID 3039) in 2620 ms on jg1-w-69.c.maclab-ukbb.internal (executor 136) (572/30000) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 781.7 in stage 0.0 (TID 3613, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 967.0 in stage 0.0 (TID 3614, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 967, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 660.6 in stage 0.0 (TID 3237) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 572] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 659.3 in stage 0.0 (TID 3163) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 573] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 659.4 in stage 0.0 (TID 3615, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 659, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 399.12 in stage 0.0 (TID 3295) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 574] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 399.13 in stage 0.0 (TID 3616, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 660.7 in stage 0.0 (TID 3617, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 660, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 197.8 in stage 0.0 (TID 3243) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 575] 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 140.8 in stage 0.0 (TID 3169) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 576] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 140.9 in stage 0.0 (TID 3618, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 918.2 in stage 0.0 (TID 3314) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 577] 2020-04-02 15:10:52 TaskSetManager: INFO: Starting task 918.3 in stage 0.0 (TID 3619, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 918, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:52 TaskSetManager: INFO: Lost task 728.7 in stage 0.0 (TID 3269) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 578] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 728.8 in stage 0.0 (TID 3620, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 197.9 in stage 0.0 (TID 3621, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 486.8 in stage 0.0 (TID 3305) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 579] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 730.6 in stage 0.0 (TID 3323) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 580] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 730.7 in stage 0.0 (TID 3622, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 730, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 486.9 in stage 0.0 (TID 3623, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 292.7 in stage 0.0 (TID 3272) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 581] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 699.6 in stage 0.0 (TID 3261) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 582] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 699.7 in stage 0.0 (TID 3624, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 942.0 in stage 0.0 (TID 3051) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 583] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 942.1 in stage 0.0 (TID 3625, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 942, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 460.7 in stage 0.0 (TID 3162) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 584] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 460.8 in stage 0.0 (TID 3626, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 63.11 in stage 0.0 (TID 3287) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 585] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 63.12 in stage 0.0 (TID 3627, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 474.8 in stage 0.0 (TID 3290) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 586] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 474.9 in stage 0.0 (TID 3628, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 292.8 in stage 0.0 (TID 3629, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 425.8 in stage 0.0 (TID 3142) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 587] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 541.6 in stage 0.0 (TID 3283) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 588] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 541.7 in stage 0.0 (TID 3630, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 541, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 834.4 in stage 0.0 (TID 3289) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 589] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 834.5 in stage 0.0 (TID 3631, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 834, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 947.0 in stage 0.0 (TID 3277) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 590] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 947.1 in stage 0.0 (TID 3632, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 947, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 128.7 in stage 0.0 (TID 3209) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 591] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 128.8 in stage 0.0 (TID 3633, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 567.6 in stage 0.0 (TID 3247) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 592] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 567.7 in stage 0.0 (TID 3634, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 567, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 593.8 in stage 0.0 (TID 3292) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 593] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 593.9 in stage 0.0 (TID 3635, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 553.4 in stage 0.0 (TID 3175) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 594] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 553.5 in stage 0.0 (TID 3636, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 553, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 205.9 in stage 0.0 (TID 3267) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 595] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 205.10 in stage 0.0 (TID 3637, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 350.6 in stage 0.0 (TID 3195) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 596] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 350.7 in stage 0.0 (TID 3638, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 350, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 425.9 in stage 0.0 (TID 3639, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 789.5 in stage 0.0 (TID 3310) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 597] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 789.6 in stage 0.0 (TID 3640, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 276.8 in stage 0.0 (TID 3112) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 598] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 191.8 in stage 0.0 (TID 3184) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 599] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 191.9 in stage 0.0 (TID 3641, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 716.5 in stage 0.0 (TID 3151) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 600] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 716.6 in stage 0.0 (TID 3642, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 716, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 326.6 in stage 0.0 (TID 3201) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 601] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 326.7 in stage 0.0 (TID 3643, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 326, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 668.5 in stage 0.0 (TID 3249) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 602] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 668.6 in stage 0.0 (TID 3644, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 668, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 588.7 in stage 0.0 (TID 3285) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 603] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 588.8 in stage 0.0 (TID 3645, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 588, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 151.10 in stage 0.0 (TID 3297) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 604] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 151.11 in stage 0.0 (TID 3646, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 767.5 in stage 0.0 (TID 2989) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 605] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 767.6 in stage 0.0 (TID 3647, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 767, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 246.8 in stage 0.0 (TID 3288) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 606] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 246.9 in stage 0.0 (TID 3648, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 657.5 in stage 0.0 (TID 3229) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 607] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 657.6 in stage 0.0 (TID 3649, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 657, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 340.7 in stage 0.0 (TID 3255) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 608] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 340.8 in stage 0.0 (TID 3650, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 331.9 in stage 0.0 (TID 3239) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 609] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 331.10 in stage 0.0 (TID 3651, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 846.5 in stage 0.0 (TID 3380) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 610] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 846.6 in stage 0.0 (TID 3652, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 846, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 193.10 in stage 0.0 (TID 3274) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 611] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 193.11 in stage 0.0 (TID 3653, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 496.8 in stage 0.0 (TID 3153) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 612] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 496.9 in stage 0.0 (TID 3654, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 939.0 in stage 0.0 (TID 3036) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 613] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 939.1 in stage 0.0 (TID 3655, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 939, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 166.9 in stage 0.0 (TID 3307) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 614] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 166.10 in stage 0.0 (TID 3656, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 276.9 in stage 0.0 (TID 3657, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 653.6 in stage 0.0 (TID 3257) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 615] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 598.8 in stage 0.0 (TID 3275) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 616] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 598.9 in stage 0.0 (TID 3658, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 257.10 in stage 0.0 (TID 3341) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 617] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 257.11 in stage 0.0 (TID 3659, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Finished task 945.0 in stage 0.0 (TID 3126) in 2463 ms on jg1-w-95.c.maclab-ukbb.internal (executor 118) (573/30000) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 653.7 in stage 0.0 (TID 3660, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 653, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 597.7 in stage 0.0 (TID 3279) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 618] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 597.8 in stage 0.0 (TID 3661, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 434.5 in stage 0.0 (TID 2562) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 619] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 434.6 in stage 0.0 (TID 3662, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 434, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 478.8 in stage 0.0 (TID 3268) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 620] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 478.9 in stage 0.0 (TID 3663, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 277.8 in stage 0.0 (TID 3199) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 621] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 277.9 in stage 0.0 (TID 3664, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 80.6 in stage 0.0 (TID 3117) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 622] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 80.7 in stage 0.0 (TID 3665, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 80, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 351.10 in stage 0.0 (TID 3356) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 623] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 351.11 in stage 0.0 (TID 3666, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 502.8 in stage 0.0 (TID 3260) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 624] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 502.9 in stage 0.0 (TID 3667, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 81.10 in stage 0.0 (TID 3358) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 625] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 81.11 in stage 0.0 (TID 3668, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 173.7 in stage 0.0 (TID 3211) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 626] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 173.8 in stage 0.0 (TID 3669, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 612.6 in stage 0.0 (TID 3330) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 627] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 612.7 in stage 0.0 (TID 3670, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 612, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 158.10 in stage 0.0 (TID 3313) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 628] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 158.11 in stage 0.0 (TID 3671, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 355.10 in stage 0.0 (TID 3362) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 629] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 355.11 in stage 0.0 (TID 3672, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 946.0 in stage 0.0 (TID 3219) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 630] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 946.1 in stage 0.0 (TID 3673, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 946, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 658.6 in stage 0.0 (TID 3291) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 631] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 658.7 in stage 0.0 (TID 3674, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 658, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 968.0 in stage 0.0 (TID 3675, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 968, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 780.6 in stage 0.0 (TID 3308) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 632] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 358.6 in stage 0.0 (TID 3178) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 633] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 358.7 in stage 0.0 (TID 3676, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 358, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 477.4 in stage 0.0 (TID 3161) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 634] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 477.5 in stage 0.0 (TID 3677, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 477, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 769.6 in stage 0.0 (TID 3339) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 635] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 769.7 in stage 0.0 (TID 3678, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 520.7 in stage 0.0 (TID 3322) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 636] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 520.8 in stage 0.0 (TID 3679, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 863.3 in stage 0.0 (TID 3321) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 637] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 863.4 in stage 0.0 (TID 3680, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 863, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 780.7 in stage 0.0 (TID 3681, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 515.6 in stage 0.0 (TID 3177) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 638] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 703.5 in stage 0.0 (TID 3337) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 639] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 703.6 in stage 0.0 (TID 3682, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 703, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 299.6 in stage 0.0 (TID 3262) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 640] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 299.7 in stage 0.0 (TID 3683, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 299, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 625.7 in stage 0.0 (TID 3328) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 641] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 625.8 in stage 0.0 (TID 3684, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 572.6 in stage 0.0 (TID 3294) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 642] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 572.7 in stage 0.0 (TID 3685, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 572, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 515.7 in stage 0.0 (TID 3686, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 515, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 115.8 in stage 0.0 (TID 3300) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 643] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 620.5 in stage 0.0 (TID 3296) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 644] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 620.6 in stage 0.0 (TID 3687, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 620, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 111.8 in stage 0.0 (TID 3286) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 645] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 111.9 in stage 0.0 (TID 3688, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 303.9 in stage 0.0 (TID 3346) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 646] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 303.10 in stage 0.0 (TID 3689, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 1.13 in stage 0.0 (TID 3282) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 647] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 1.14 in stage 0.0 (TID 3690, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 115.9 in stage 0.0 (TID 3691, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 115, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 442.8 in stage 0.0 (TID 3383) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 648] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 497.8 in stage 0.0 (TID 3333) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 649] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 497.9 in stage 0.0 (TID 3692, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 790.5 in stage 0.0 (TID 3331) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 650] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 790.6 in stage 0.0 (TID 3693, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 790, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 454.6 in stage 0.0 (TID 3240) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 651] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 454.7 in stage 0.0 (TID 3694, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 454, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 281.9 in stage 0.0 (TID 3167) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 652] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 281.10 in stage 0.0 (TID 3695, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 796.4 in stage 0.0 (TID 3136) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 653] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 796.5 in stage 0.0 (TID 3696, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 796, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 442.9 in stage 0.0 (TID 3697, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 762.7 in stage 0.0 (TID 3425) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 654] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 521.6 in stage 0.0 (TID 3213) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 655] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 521.7 in stage 0.0 (TID 3698, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 521, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 53.12 in stage 0.0 (TID 3424) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 656] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 53.13 in stage 0.0 (TID 3699, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 736.6 in stage 0.0 (TID 3412) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 657] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 736.7 in stage 0.0 (TID 3700, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 225.9 in stage 0.0 (TID 3312) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 658] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 225.10 in stage 0.0 (TID 3701, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 27.9 in stage 0.0 (TID 3311) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 659] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 27.10 in stage 0.0 (TID 3702, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 798.4 in stage 0.0 (TID 3302) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 660] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 798.5 in stage 0.0 (TID 3703, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 798, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 327.8 in stage 0.0 (TID 3353) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 661] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 327.9 in stage 0.0 (TID 3704, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 142.10 in stage 0.0 (TID 3376) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 662] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 142.11 in stage 0.0 (TID 3705, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 585.6 in stage 0.0 (TID 3238) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 663] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 585.7 in stage 0.0 (TID 3706, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 585, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 896.2 in stage 0.0 (TID 3319) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 664] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 896.3 in stage 0.0 (TID 3707, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 896, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 435.9 in stage 0.0 (TID 3357) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 665] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 435.10 in stage 0.0 (TID 3708, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 762.8 in stage 0.0 (TID 3709, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 785.4 in stage 0.0 (TID 3301) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 666] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 52.13 in stage 0.0 (TID 3386) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 667] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 52.14 in stage 0.0 (TID 3710, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 746.6 in stage 0.0 (TID 3378) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 668] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 746.7 in stage 0.0 (TID 3711, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 202.10 in stage 0.0 (TID 3350) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 669] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 202.11 in stage 0.0 (TID 3712, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 848.5 in stage 0.0 (TID 3409) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 670] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 848.6 in stage 0.0 (TID 3713, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 848, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 878.4 in stage 0.0 (TID 3377) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 671] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 878.5 in stage 0.0 (TID 3714, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 878, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 354.8 in stage 0.0 (TID 3235) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 672] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 354.9 in stage 0.0 (TID 3715, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 828.5 in stage 0.0 (TID 3360) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 673] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 828.6 in stage 0.0 (TID 3716, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 828, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 799.5 in stage 0.0 (TID 3349) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 674] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 799.6 in stage 0.0 (TID 3717, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 799, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 511.8 in stage 0.0 (TID 3370) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 675] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 511.9 in stage 0.0 (TID 3718, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 136.8 in stage 0.0 (TID 3325) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 676] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 136.9 in stage 0.0 (TID 3719, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 247.10 in stage 0.0 (TID 3436) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 677] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 247.11 in stage 0.0 (TID 3720, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 759.6 in stage 0.0 (TID 3338) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 678] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 759.7 in stage 0.0 (TID 3721, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 759, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 415.11 in stage 0.0 (TID 3434) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 679] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 415.12 in stage 0.0 (TID 3722, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 215.5 in stage 0.0 (TID 3198) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 680] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 215.6 in stage 0.0 (TID 3723, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 215, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 718.7 in stage 0.0 (TID 3385) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 681] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 718.8 in stage 0.0 (TID 3724, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 785.5 in stage 0.0 (TID 3725, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 785, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 401.7 in stage 0.0 (TID 3317) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 682] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 441.9 in stage 0.0 (TID 3398) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 683] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 441.10 in stage 0.0 (TID 3726, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 578.6 in stage 0.0 (TID 3265) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 684] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 578.7 in stage 0.0 (TID 3727, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 578, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 199.10 in stage 0.0 (TID 3363) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 685] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 199.11 in stage 0.0 (TID 3728, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 644.7 in stage 0.0 (TID 3406) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 686] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 644.8 in stage 0.0 (TID 3729, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 903.3 in stage 0.0 (TID 3359) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 687] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 903.4 in stage 0.0 (TID 3730, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 903, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 673.7 in stage 0.0 (TID 3389) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 688] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 673.8 in stage 0.0 (TID 3731, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 604.6 in stage 0.0 (TID 3411) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 689] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 604.7 in stage 0.0 (TID 3732, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 604, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 513.9 in stage 0.0 (TID 3342) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 690] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 513.10 in stage 0.0 (TID 3733, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 401.8 in stage 0.0 (TID 3734, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 155.7 in stage 0.0 (TID 3200) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 691] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 330.6 in stage 0.0 (TID 3396) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 692] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 330.7 in stage 0.0 (TID 3735, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 330, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 710.7 in stage 0.0 (TID 3393) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 693] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 710.8 in stage 0.0 (TID 3736, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 155.8 in stage 0.0 (TID 3737, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 155, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 518.8 in stage 0.0 (TID 3390) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 694] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 526.7 in stage 0.0 (TID 3299) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 695] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 526.8 in stage 0.0 (TID 3738, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 526, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 398.6 in stage 0.0 (TID 3326) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 696] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 398.7 in stage 0.0 (TID 3739, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 398, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 758.6 in stage 0.0 (TID 3469) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 697] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 758.7 in stage 0.0 (TID 3740, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 758, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 449.11 in stage 0.0 (TID 3448) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 698] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 449.12 in stage 0.0 (TID 3741, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 951.0 in stage 0.0 (TID 3371) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 699] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 951.1 in stage 0.0 (TID 3742, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 951, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 761.6 in stage 0.0 (TID 3327) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 700] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 761.7 in stage 0.0 (TID 3743, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 761, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 495.8 in stage 0.0 (TID 3379) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 701] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 495.9 in stage 0.0 (TID 3744, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 49.9 in stage 0.0 (TID 3187) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 702] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 49.10 in stage 0.0 (TID 3745, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 177.8 in stage 0.0 (TID 2826) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 703] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 177.9 in stage 0.0 (TID 3746, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 518.9 in stage 0.0 (TID 3747, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 346.8 in stage 0.0 (TID 3426) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 704] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 847.5 in stage 0.0 (TID 3417) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 705] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 847.6 in stage 0.0 (TID 3748, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 847, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 568.7 in stage 0.0 (TID 3421) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 706] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 568.8 in stage 0.0 (TID 3749, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 608.7 in stage 0.0 (TID 3351) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 707] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 608.8 in stage 0.0 (TID 3750, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 783.6 in stage 0.0 (TID 3428) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 708] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 783.7 in stage 0.0 (TID 3751, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 783, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 289.9 in stage 0.0 (TID 3423) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 709] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 289.10 in stage 0.0 (TID 3752, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 817.5 in stage 0.0 (TID 3387) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 710] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 817.6 in stage 0.0 (TID 3753, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 817, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 274.9 in stage 0.0 (TID 3263) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 711] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 274.10 in stage 0.0 (TID 3754, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 310.10 in stage 0.0 (TID 3422) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 712] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 310.11 in stage 0.0 (TID 3755, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 756.6 in stage 0.0 (TID 3408) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 713] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 756.7 in stage 0.0 (TID 3756, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 443.10 in stage 0.0 (TID 3402) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 714] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 443.11 in stage 0.0 (TID 3757, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 75.11 in stage 0.0 (TID 3369) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 715] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 75.12 in stage 0.0 (TID 3758, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 400.8 in stage 0.0 (TID 3473) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 716] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 400.9 in stage 0.0 (TID 3759, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 856.5 in stage 0.0 (TID 3501) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 717] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 856.6 in stage 0.0 (TID 3760, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 856, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 955.0 in stage 0.0 (TID 3414) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 718] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 955.1 in stage 0.0 (TID 3761, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 955, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 359.7 in stage 0.0 (TID 3309) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 719] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 359.8 in stage 0.0 (TID 3762, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 702.5 in stage 0.0 (TID 3278) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 720] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 702.6 in stage 0.0 (TID 3763, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 702, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 517.8 in stage 0.0 (TID 3397) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 721] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 517.9 in stage 0.0 (TID 3764, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 628.7 in stage 0.0 (TID 3401) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 722] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 628.8 in stage 0.0 (TID 3765, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 694.7 in stage 0.0 (TID 3486) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 723] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 694.8 in stage 0.0 (TID 3766, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 607.5 in stage 0.0 (TID 3206) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 724] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 607.6 in stage 0.0 (TID 3767, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 607, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 535.8 in stage 0.0 (TID 3430) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 725] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 535.9 in stage 0.0 (TID 3768, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 768.5 in stage 0.0 (TID 3336) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 726] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 768.6 in stage 0.0 (TID 3769, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 768, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 346.9 in stage 0.0 (TID 3770, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 950.0 in stage 0.0 (TID 3355) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 727] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 707.7 in stage 0.0 (TID 3440) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 728] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 707.8 in stage 0.0 (TID 3771, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 195.11 in stage 0.0 (TID 3496) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 729] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 195.12 in stage 0.0 (TID 3772, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 950.1 in stage 0.0 (TID 3773, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 950, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 360.8 in stage 0.0 (TID 3413) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 730] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 270.7 in stage 0.0 (TID 3405) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 731] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 270.8 in stage 0.0 (TID 3774, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 270, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 169.9 in stage 0.0 (TID 3418) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 732] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 169.10 in stage 0.0 (TID 3775, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 697.6 in stage 0.0 (TID 3444) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 733] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 697.7 in stage 0.0 (TID 3776, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 697, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 794.6 in stage 0.0 (TID 3367) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 734] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 794.7 in stage 0.0 (TID 3777, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 794, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 843.4 in stage 0.0 (TID 3318) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 735] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 843.5 in stage 0.0 (TID 3778, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 843, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 818.5 in stage 0.0 (TID 3364) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 736] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 818.6 in stage 0.0 (TID 3779, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 818, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 282.10 in stage 0.0 (TID 3484) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 737] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 282.11 in stage 0.0 (TID 3780, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 880.3 in stage 0.0 (TID 3276) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 738] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 880.4 in stage 0.0 (TID 3781, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 880, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 742.7 in stage 0.0 (TID 3487) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 739] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 742.8 in stage 0.0 (TID 3782, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 406.10 in stage 0.0 (TID 3381) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 740] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 406.11 in stage 0.0 (TID 3783, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 840.5 in stage 0.0 (TID 3458) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 741] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 840.6 in stage 0.0 (TID 3784, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 840, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 360.9 in stage 0.0 (TID 3785, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 614.6 in stage 0.0 (TID 3449) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 742] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 423.11 in stage 0.0 (TID 3462) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 743] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 423.12 in stage 0.0 (TID 3786, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 212.9 in stage 0.0 (TID 3410) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 744] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 212.10 in stage 0.0 (TID 3787, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 121.9 in stage 0.0 (TID 3392) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 745] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 121.10 in stage 0.0 (TID 3788, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 414.9 in stage 0.0 (TID 3366) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 746] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 414.10 in stage 0.0 (TID 3789, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 167.11 in stage 0.0 (TID 3519) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 747] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 167.12 in stage 0.0 (TID 3790, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 39.10 in stage 0.0 (TID 3382) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 748] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 39.11 in stage 0.0 (TID 3791, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 20.11 in stage 0.0 (TID 3368) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 749] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 20.12 in stage 0.0 (TID 3792, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 614.7 in stage 0.0 (TID 3793, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 491.7 in stage 0.0 (TID 3345) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 750] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 842.4 in stage 0.0 (TID 3259) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 751] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 842.5 in stage 0.0 (TID 3794, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 842, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 187.11 in stage 0.0 (TID 3544) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 752] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 187.12 in stage 0.0 (TID 3795, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 58.12 in stage 0.0 (TID 3457) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 753] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 58.13 in stage 0.0 (TID 3796, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 683.6 in stage 0.0 (TID 3407) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 754] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 683.7 in stage 0.0 (TID 3797, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 683, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 584.8 in stage 0.0 (TID 3464) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 755] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 584.9 in stage 0.0 (TID 3798, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 491.8 in stage 0.0 (TID 3799, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 791.6 in stage 0.0 (TID 3518) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 756] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 704.6 in stage 0.0 (TID 3459) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 757] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 704.7 in stage 0.0 (TID 3800, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 704, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 949.0 in stage 0.0 (TID 3329) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 758] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 949.1 in stage 0.0 (TID 3801, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 949, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 814.5 in stage 0.0 (TID 3427) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 759] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 814.6 in stage 0.0 (TID 3802, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 814, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 487.10 in stage 0.0 (TID 3535) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 760] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 487.11 in stage 0.0 (TID 3803, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 605.5 in stage 0.0 (TID 3343) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 761] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 605.6 in stage 0.0 (TID 3804, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 605, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 64.8 in stage 0.0 (TID 3316) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 762] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 64.9 in stage 0.0 (TID 3805, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 47.11 in stage 0.0 (TID 3445) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 763] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 47.12 in stage 0.0 (TID 3806, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 242.8 in stage 0.0 (TID 3347) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 764] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 242.9 in stage 0.0 (TID 3807, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 476.8 in stage 0.0 (TID 3332) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 765] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 476.9 in stage 0.0 (TID 3808, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 897.2 in stage 0.0 (TID 3374) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 766] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 897.3 in stage 0.0 (TID 3809, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 897, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 500.7 in stage 0.0 (TID 3348) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 767] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 500.8 in stage 0.0 (TID 3810, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 791.7 in stage 0.0 (TID 3811, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 791, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 334.9 in stage 0.0 (TID 3509) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 768] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 201.10 in stage 0.0 (TID 3451) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 769] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 201.11 in stage 0.0 (TID 3812, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 850.3 in stage 0.0 (TID 3433) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 770] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 850.4 in stage 0.0 (TID 3813, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 850, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 536.7 in stage 0.0 (TID 3415) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 771] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 536.8 in stage 0.0 (TID 3814, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 109.9 in stage 0.0 (TID 3477) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 772] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 109.10 in stage 0.0 (TID 3815, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 153.9 in stage 0.0 (TID 3467) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 773] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 153.10 in stage 0.0 (TID 3816, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 162.7 in stage 0.0 (TID 3266) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 774] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 162.8 in stage 0.0 (TID 3817, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 162, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 170.10 in stage 0.0 (TID 3447) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 775] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 170.11 in stage 0.0 (TID 3818, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 209.9 in stage 0.0 (TID 3432) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 776] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 209.10 in stage 0.0 (TID 3819, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 777.6 in stage 0.0 (TID 3504) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 777] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 777.7 in stage 0.0 (TID 3820, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 334.10 in stage 0.0 (TID 3821, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 822.3 in stage 0.0 (TID 3365) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 778] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 392.9 in stage 0.0 (TID 3475) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 779] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 392.10 in stage 0.0 (TID 3822, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 592.8 in stage 0.0 (TID 3463) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 780] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 592.9 in stage 0.0 (TID 3823, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 348.8 in stage 0.0 (TID 3438) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 781] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 348.9 in stage 0.0 (TID 3824, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 3.10 in stage 0.0 (TID 3461) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 782] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 3.11 in stage 0.0 (TID 3825, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 408.12 in stage 0.0 (TID 3503) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 783] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 408.13 in stage 0.0 (TID 3826, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 335.9 in stage 0.0 (TID 3536) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 784] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 335.10 in stage 0.0 (TID 3827, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 810.4 in stage 0.0 (TID 3482) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 785] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 810.5 in stage 0.0 (TID 3828, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 810, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 504.10 in stage 0.0 (TID 3528) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 786] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 504.11 in stage 0.0 (TID 3829, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 822.4 in stage 0.0 (TID 3830, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 822, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 519.9 in stage 0.0 (TID 3514) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 787] 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 784.3 in stage 0.0 (TID 3197) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 788] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 784.4 in stage 0.0 (TID 3831, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 784, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 143.10 in stage 0.0 (TID 3511) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 789] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 143.11 in stage 0.0 (TID 3832, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 51.9 in stage 0.0 (TID 3453) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 790] 2020-04-02 15:10:53 TaskSetManager: INFO: Starting task 51.10 in stage 0.0 (TID 3833, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:53 TaskSetManager: INFO: Lost task 944.1 in stage 0.0 (TID 3429) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 791] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 944.2 in stage 0.0 (TID 3834, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 944, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 679.6 in stage 0.0 (TID 3435) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 792] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 679.7 in stage 0.0 (TID 3835, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 679, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 519.10 in stage 0.0 (TID 3836, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 582.6 in stage 0.0 (TID 3479) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 793] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 582.7 in stage 0.0 (TID 3837, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 582, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 175.9 in stage 0.0 (TID 3490) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 794] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 793.5 in stage 0.0 (TID 3471) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 795] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 793.6 in stage 0.0 (TID 3838, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 793, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 820.4 in stage 0.0 (TID 3483) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 796] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 820.5 in stage 0.0 (TID 3839, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 820, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 175.10 in stage 0.0 (TID 3840, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 709.7 in stage 0.0 (TID 3478) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 797] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 198.11 in stage 0.0 (TID 3533) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 798] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 198.12 in stage 0.0 (TID 3841, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 596.7 in stage 0.0 (TID 3395) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 799] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 596.8 in stage 0.0 (TID 3842, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 709.8 in stage 0.0 (TID 3843, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 829.6 in stage 0.0 (TID 3554) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 800] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 693.4 in stage 0.0 (TID 3320) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 801] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 693.5 in stage 0.0 (TID 3844, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 693, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 544.9 in stage 0.0 (TID 3513) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 802] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 544.10 in stage 0.0 (TID 3845, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 601.7 in stage 0.0 (TID 3419) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 803] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 601.8 in stage 0.0 (TID 3846, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 113.11 in stage 0.0 (TID 3530) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 804] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 113.12 in stage 0.0 (TID 3847, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 426.11 in stage 0.0 (TID 3507) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 805] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 426.12 in stage 0.0 (TID 3848, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 727.7 in stage 0.0 (TID 3498) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 806] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 727.8 in stage 0.0 (TID 3849, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 50.10 in stage 0.0 (TID 3542) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 807] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 50.11 in stage 0.0 (TID 3850, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 554.8 in stage 0.0 (TID 3354) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 808] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 554.9 in stage 0.0 (TID 3851, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 157.12 in stage 0.0 (TID 3531) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 809] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 157.13 in stage 0.0 (TID 3852, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 409.10 in stage 0.0 (TID 3506) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 810] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 409.11 in stage 0.0 (TID 3853, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 721.7 in stage 0.0 (TID 3485) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 811] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 721.8 in stage 0.0 (TID 3854, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 488.7 in stage 0.0 (TID 3494) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 812] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 488.8 in stage 0.0 (TID 3855, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 591.6 in stage 0.0 (TID 3388) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 813] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 591.7 in stage 0.0 (TID 3856, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 591, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 687.5 in stage 0.0 (TID 3443) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 814] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 687.6 in stage 0.0 (TID 3857, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 687, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 829.7 in stage 0.0 (TID 3858, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 829, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 493.7 in stage 0.0 (TID 3420) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 815] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 489.7 in stage 0.0 (TID 3281) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 816] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 489.8 in stage 0.0 (TID 3859, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 347.9 in stage 0.0 (TID 3560) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 817] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 347.10 in stage 0.0 (TID 3860, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 493.8 in stage 0.0 (TID 3861, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 609.8 in stage 0.0 (TID 3525) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 818] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 609.9 in stage 0.0 (TID 3862, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 838.5 in stage 0.0 (TID 3580) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 819] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 507.7 in stage 0.0 (TID 3491) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 820] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 507.8 in stage 0.0 (TID 3863, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 391.5 in stage 0.0 (TID 3304) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 821] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 391.6 in stage 0.0 (TID 3864, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 391, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 217.8 in stage 0.0 (TID 3340) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 822] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 217.9 in stage 0.0 (TID 3865, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 838.6 in stage 0.0 (TID 3866, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 838, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 539.6 in stage 0.0 (TID 3404) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 823] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 516.7 in stage 0.0 (TID 3442) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 824] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 516.8 in stage 0.0 (TID 3867, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 781.7 in stage 0.0 (TID 3613) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 825] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 781.8 in stage 0.0 (TID 3868, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 156.11 in stage 0.0 (TID 3563) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 826] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 156.12 in stage 0.0 (TID 3869, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 160.8 in stage 0.0 (TID 3472) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 827] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 160.9 in stage 0.0 (TID 3870, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Finished task 958.0 in stage 0.0 (TID 3456) in 1890 ms on jg1-w-62.c.maclab-ukbb.internal (executor 60) (574/30000) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 539.7 in stage 0.0 (TID 3871, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 539, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 948.0 in stage 0.0 (TID 3324) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 828] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 948.1 in stage 0.0 (TID 3872, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 948, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 744.7 in stage 0.0 (TID 3586) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 829] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 744.8 in stage 0.0 (TID 3873, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 361.7 in stage 0.0 (TID 3446) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 830] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 361.8 in stage 0.0 (TID 3874, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 361, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 719.8 in stage 0.0 (TID 3500) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 831] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 719.9 in stage 0.0 (TID 3875, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 248.9 in stage 0.0 (TID 3510) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 832] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 248.10 in stage 0.0 (TID 3876, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 152.8 in stage 0.0 (TID 3373) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 833] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 152.9 in stage 0.0 (TID 3877, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Finished task 953.0 in stage 0.0 (TID 3391) in 2193 ms on jg1-w-22.c.maclab-ukbb.internal (executor 8) (575/30000) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 969.0 in stage 0.0 (TID 3878, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 969, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 366.8 in stage 0.0 (TID 3465) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 834] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 366.9 in stage 0.0 (TID 3879, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 508.6 in stage 0.0 (TID 3394) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 835] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 508.7 in stage 0.0 (TID 3880, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 508, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 806.5 in stage 0.0 (TID 3439) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 836] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 806.6 in stage 0.0 (TID 3881, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 806, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 970.0 in stage 0.0 (TID 3882, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 970, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 433.6 in stage 0.0 (TID 3344) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 837] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 427.9 in stage 0.0 (TID 3493) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 838] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 427.10 in stage 0.0 (TID 3883, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 821.6 in stage 0.0 (TID 3579) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 839] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 821.7 in stage 0.0 (TID 3884, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 194.11 in stage 0.0 (TID 3587) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 840] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 194.12 in stage 0.0 (TID 3885, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Finished task 959.0 in stage 0.0 (TID 3460) in 1971 ms on jg1-w-6.c.maclab-ukbb.internal (executor 176) (576/30000) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 433.7 in stage 0.0 (TID 3886, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 433, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 224.8 in stage 0.0 (TID 3522) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 841] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 224.9 in stage 0.0 (TID 3887, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 729.5 in stage 0.0 (TID 3416) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 842] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 729.6 in stage 0.0 (TID 3888, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 729, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 154.15 in stage 0.0 (TID 3526) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 843] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 154.16 in stage 0.0 (TID 3889, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 954.0 in stage 0.0 (TID 3403) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 844] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 954.1 in stage 0.0 (TID 3890, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 954, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 275.11 in stage 0.0 (TID 3572) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 845] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 275.12 in stage 0.0 (TID 3891, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 309.7 in stage 0.0 (TID 3400) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 846] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 309.8 in stage 0.0 (TID 3892, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 309, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 971.0 in stage 0.0 (TID 3893, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 971, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 345.9 in stage 0.0 (TID 3499) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 847] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 803.6 in stage 0.0 (TID 3593) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 848] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 803.7 in stage 0.0 (TID 3894, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 803, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 399.13 in stage 0.0 (TID 3616) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 849] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 399.14 in stage 0.0 (TID 3895, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 186.9 in stage 0.0 (TID 3481) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 850] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 186.10 in stage 0.0 (TID 3896, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 779.5 in stage 0.0 (TID 3549) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 851] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 779.6 in stage 0.0 (TID 3897, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 779, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 165.9 in stage 0.0 (TID 3537) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 852] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 165.10 in stage 0.0 (TID 3898, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 0.15 in stage 0.0 (TID 3585) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 853] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 0.16 in stage 0.0 (TID 3899, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 345.10 in stage 0.0 (TID 3900, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 916.2 in stage 0.0 (TID 3532) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 854] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 854.3 in stage 0.0 (TID 3515) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 855] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 854.4 in stage 0.0 (TID 3901, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 854, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 188.10 in stage 0.0 (TID 3568) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 856] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 188.11 in stage 0.0 (TID 3902, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 492.8 in stage 0.0 (TID 3545) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 857] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 492.9 in stage 0.0 (TID 3903, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 725.5 in stage 0.0 (TID 3489) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 858] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 725.6 in stage 0.0 (TID 3904, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 725, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 715.6 in stage 0.0 (TID 3524) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 859] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 715.7 in stage 0.0 (TID 3905, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 715, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 852.5 in stage 0.0 (TID 3577) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 860] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 852.6 in stage 0.0 (TID 3906, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 852, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 292.8 in stage 0.0 (TID 3629) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 861] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 292.9 in stage 0.0 (TID 3907, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 834.5 in stage 0.0 (TID 3631) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 862] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 834.6 in stage 0.0 (TID 3908, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 834, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 916.3 in stage 0.0 (TID 3909, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 916, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 444.10 in stage 0.0 (TID 3582) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 863] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 861.5 in stage 0.0 (TID 3607) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 864] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 861.6 in stage 0.0 (TID 3910, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 861, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 680.8 in stage 0.0 (TID 3597) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 865] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 680.9 in stage 0.0 (TID 3911, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 918.3 in stage 0.0 (TID 3619) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 866] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 918.4 in stage 0.0 (TID 3912, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 918, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 957.0 in stage 0.0 (TID 3454) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 867] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 957.1 in stage 0.0 (TID 3913, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 957, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 390.8 in stage 0.0 (TID 3609) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 868] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 390.9 in stage 0.0 (TID 3914, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 804.4 in stage 0.0 (TID 3361) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 869] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 804.5 in stage 0.0 (TID 3915, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 804, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 444.11 in stage 0.0 (TID 3916, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 459.9 in stage 0.0 (TID 3550) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 870] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 631.6 in stage 0.0 (TID 3546) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 871] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 631.7 in stage 0.0 (TID 3917, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 631, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 778.5 in stage 0.0 (TID 3552) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 872] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 778.6 in stage 0.0 (TID 3918, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 778, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 774.6 in stage 0.0 (TID 3517) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 873] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 774.7 in stage 0.0 (TID 3919, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 774, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 91.12 in stage 0.0 (TID 3578) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 874] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 91.13 in stage 0.0 (TID 3920, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 593.9 in stage 0.0 (TID 3635) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 875] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 593.10 in stage 0.0 (TID 3921, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 125.8 in stage 0.0 (TID 3455) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 876] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 125.9 in stage 0.0 (TID 3922, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 775.5 in stage 0.0 (TID 3523) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 877] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 775.6 in stage 0.0 (TID 3923, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 775, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 185.10 in stage 0.0 (TID 3604) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 878] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 185.11 in stage 0.0 (TID 3924, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 459.10 in stage 0.0 (TID 3925, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 192.8 in stage 0.0 (TID 3521) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 879] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 919.2 in stage 0.0 (TID 3608) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 880] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 919.3 in stage 0.0 (TID 3926, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 919, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 424.7 in stage 0.0 (TID 3547) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 881] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 424.8 in stage 0.0 (TID 3927, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 424, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 54.7 in stage 0.0 (TID 3516) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 882] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 54.8 in stage 0.0 (TID 3928, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 54, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 788.2 in stage 0.0 (TID 3466) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 883] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 788.3 in stage 0.0 (TID 3929, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 788, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 206.11 in stage 0.0 (TID 3596) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 884] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 206.12 in stage 0.0 (TID 3930, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 776.6 in stage 0.0 (TID 3502) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 885] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 776.7 in stage 0.0 (TID 3931, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 776, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 192.9 in stage 0.0 (TID 3932, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 947.1 in stage 0.0 (TID 3632) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 886] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 789.6 in stage 0.0 (TID 3640) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 887] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 789.7 in stage 0.0 (TID 3933, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 227.7 in stage 0.0 (TID 3352) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 888] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 227.8 in stage 0.0 (TID 3934, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 227, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 624.6 in stage 0.0 (TID 3480) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 889] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 624.7 in stage 0.0 (TID 3935, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 624, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 475.10 in stage 0.0 (TID 3611) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 890] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 475.11 in stage 0.0 (TID 3936, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 505.9 in stage 0.0 (TID 3551) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 891] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 505.10 in stage 0.0 (TID 3937, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 107.8 in stage 0.0 (TID 3508) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 892] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 107.9 in stage 0.0 (TID 3938, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 711.6 in stage 0.0 (TID 3599) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 893] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 711.7 in stage 0.0 (TID 3939, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 711, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 438.7 in stage 0.0 (TID 3452) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 894] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 438.8 in stage 0.0 (TID 3940, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 438, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Finished task 952.0 in stage 0.0 (TID 3372) in 2537 ms on jg1-w-15.c.maclab-ukbb.internal (executor 83) (577/30000) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 947.2 in stage 0.0 (TID 3941, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 947, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 634.6 in stage 0.0 (TID 3558) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 895] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 634.7 in stage 0.0 (TID 3942, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 634, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 972.0 in stage 0.0 (TID 3943, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 972, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 713.7 in stage 0.0 (TID 3562) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 896] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 288.9 in stage 0.0 (TID 3539) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 897] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 288.10 in stage 0.0 (TID 3944, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 220.11 in stage 0.0 (TID 3591) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 898] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 220.12 in stage 0.0 (TID 3945, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 158.11 in stage 0.0 (TID 3671) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 899] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 158.12 in stage 0.0 (TID 3946, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 691.5 in stage 0.0 (TID 3488) on jg1-w-66.c.maclab-ukbb.internal, executor 159: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 900] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 691.6 in stage 0.0 (TID 3947, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 691, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 713.8 in stage 0.0 (TID 3948, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 764.6 in stage 0.0 (TID 3527) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 901] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 764.7 in stage 0.0 (TID 3949, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 764, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 331.10 in stage 0.0 (TID 3651) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 902] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 506.9 in stage 0.0 (TID 3589) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 903] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 506.10 in stage 0.0 (TID 3950, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 280.8 in stage 0.0 (TID 3569) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 904] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 280.9 in stage 0.0 (TID 3951, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 331.11 in stage 0.0 (TID 3952, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 583.6 in stage 0.0 (TID 3476) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 905] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 583.7 in stage 0.0 (TID 3953, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 583, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 939.1 in stage 0.0 (TID 3655) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 906] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 728.8 in stage 0.0 (TID 3620) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 907] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 728.9 in stage 0.0 (TID 3954, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 839.4 in stage 0.0 (TID 3570) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 908] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 839.5 in stage 0.0 (TID 3955, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 839, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 372.7 in stage 0.0 (TID 3553) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 909] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 372.8 in stage 0.0 (TID 3956, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 846.6 in stage 0.0 (TID 3652) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 910] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 846.7 in stage 0.0 (TID 3957, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 846, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 654.6 in stage 0.0 (TID 3375) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 911] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 654.7 in stage 0.0 (TID 3958, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 654, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 627.8 in stage 0.0 (TID 3541) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 912] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 627.9 in stage 0.0 (TID 3959, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 849.5 in stage 0.0 (TID 3581) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 913] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 849.6 in stage 0.0 (TID 3960, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 849, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 106.9 in stage 0.0 (TID 3495) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 914] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 106.10 in stage 0.0 (TID 3961, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 130.6 in stage 0.0 (TID 3592) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 915] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 130.7 in stage 0.0 (TID 3962, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 130, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 598.9 in stage 0.0 (TID 3658) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 916] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 598.10 in stage 0.0 (TID 3963, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 699.7 in stage 0.0 (TID 3624) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 917] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 699.8 in stage 0.0 (TID 3964, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 218.8 in stage 0.0 (TID 3538) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 918] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 218.9 in stage 0.0 (TID 3965, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 939.2 in stage 0.0 (TID 3966, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 939, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 31.10 in stage 0.0 (TID 3561) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 919] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 862.4 in stage 0.0 (TID 3595) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 920] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 862.5 in stage 0.0 (TID 3967, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 862, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 418.9 in stage 0.0 (TID 3556) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 921] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 418.10 in stage 0.0 (TID 3968, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 31.11 in stage 0.0 (TID 3969, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 351.11 in stage 0.0 (TID 3666) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 922] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 196.9 in stage 0.0 (TID 3575) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 923] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 196.10 in stage 0.0 (TID 3970, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 855.5 in stage 0.0 (TID 3574) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 924] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 855.6 in stage 0.0 (TID 3971, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 855, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 511.9 in stage 0.0 (TID 3718) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 925] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 511.10 in stage 0.0 (TID 3972, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 333.10 in stage 0.0 (TID 3606) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 926] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 333.11 in stage 0.0 (TID 3973, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 542.5 in stage 0.0 (TID 3548) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 927] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 542.6 in stage 0.0 (TID 3974, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 542, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 63.12 in stage 0.0 (TID 3627) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 928] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 63.13 in stage 0.0 (TID 3975, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 690.7 in stage 0.0 (TID 3583) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 929] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 690.8 in stage 0.0 (TID 3976, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 730.7 in stage 0.0 (TID 3622) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 930] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 730.8 in stage 0.0 (TID 3977, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 730, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 460.8 in stage 0.0 (TID 3626) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 931] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 460.9 in stage 0.0 (TID 3978, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 166.10 in stage 0.0 (TID 3656) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 932] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 166.11 in stage 0.0 (TID 3979, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 780.7 in stage 0.0 (TID 3681) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 933] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 780.8 in stage 0.0 (TID 3980, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 351.12 in stage 0.0 (TID 3981, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 762.8 in stage 0.0 (TID 3709) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 934] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 205.10 in stage 0.0 (TID 3637) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 935] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 205.11 in stage 0.0 (TID 3982, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 960.0 in stage 0.0 (TID 3520) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 936] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 960.1 in stage 0.0 (TID 3983, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 960, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 765.6 in stage 0.0 (TID 3474) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 937] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 765.7 in stage 0.0 (TID 3984, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 765, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 698.6 in stage 0.0 (TID 3565) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 938] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 698.7 in stage 0.0 (TID 3985, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 698, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 197.9 in stage 0.0 (TID 3621) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 939] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 197.10 in stage 0.0 (TID 3986, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 964.0 in stage 0.0 (TID 3566) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 940] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 964.1 in stage 0.0 (TID 3987, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 964, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 407.10 in stage 0.0 (TID 3594) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 941] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 407.11 in stage 0.0 (TID 3988, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 703.6 in stage 0.0 (TID 3682) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 942] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 703.7 in stage 0.0 (TID 3989, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 703, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 257.11 in stage 0.0 (TID 3659) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 943] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 257.12 in stage 0.0 (TID 3990, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 594.7 in stage 0.0 (TID 3601) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 944] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 594.8 in stage 0.0 (TID 3991, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 496.9 in stage 0.0 (TID 3654) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 945] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 496.10 in stage 0.0 (TID 3992, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 667.5 in stage 0.0 (TID 3470) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 946] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 667.6 in stage 0.0 (TID 3993, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 667, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 762.9 in stage 0.0 (TID 3994, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 502.9 in stage 0.0 (TID 3667) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 947] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 199.11 in stage 0.0 (TID 3728) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 948] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 199.12 in stage 0.0 (TID 3995, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 41.8 in stage 0.0 (TID 3505) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 949] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 41.9 in stage 0.0 (TID 3996, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 543.8 in stage 0.0 (TID 3612) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 950] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 543.9 in stage 0.0 (TID 3997, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 502.10 in stage 0.0 (TID 3998, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 53.13 in stage 0.0 (TID 3699) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 951] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 191.9 in stage 0.0 (TID 3641) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 952] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 191.10 in stage 0.0 (TID 3999, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 653.7 in stage 0.0 (TID 3660) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 953] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 653.8 in stage 0.0 (TID 4000, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 653, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 241.7 in stage 0.0 (TID 3534) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 954] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 241.8 in stage 0.0 (TID 4001, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 241, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 141.7 in stage 0.0 (TID 3492) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 955] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 141.8 in stage 0.0 (TID 4002, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 141, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Finished task 961.0 in stage 0.0 (TID 3529) in 2175 ms on jg1-w-67.c.maclab-ukbb.internal (executor 110) (578/30000) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 53.14 in stage 0.0 (TID 4003, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 514.6 in stage 0.0 (TID 3468) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 956] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 514.7 in stage 0.0 (TID 4004, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 514, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 848.6 in stage 0.0 (TID 3713) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 957] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 848.7 in stage 0.0 (TID 4005, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 848, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 140.9 in stage 0.0 (TID 3618) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 958] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 140.10 in stage 0.0 (TID 4006, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 422.8 in stage 0.0 (TID 3600) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 959] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 422.9 in stage 0.0 (TID 4007, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 52.14 in stage 0.0 (TID 3710) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 960] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 52.15 in stage 0.0 (TID 4008, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 340.8 in stage 0.0 (TID 3650) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 961] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 340.9 in stage 0.0 (TID 4009, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 303.10 in stage 0.0 (TID 3689) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 962] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 303.11 in stage 0.0 (TID 4010, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 553.5 in stage 0.0 (TID 3636) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 963] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 553.6 in stage 0.0 (TID 4011, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 553, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 973.0 in stage 0.0 (TID 4012, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 973, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 660.7 in stage 0.0 (TID 3617) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 964] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 355.11 in stage 0.0 (TID 3672) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 965] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 355.12 in stage 0.0 (TID 4013, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 164.8 in stage 0.0 (TID 3512) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 966] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 164.9 in stage 0.0 (TID 4014, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 863.4 in stage 0.0 (TID 3680) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 967] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 863.5 in stage 0.0 (TID 4015, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 863, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 327.9 in stage 0.0 (TID 3704) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 968] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 327.10 in stage 0.0 (TID 4016, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 657.6 in stage 0.0 (TID 3649) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 969] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 657.7 in stage 0.0 (TID 4017, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 657, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 736.7 in stage 0.0 (TID 3700) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 970] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 736.8 in stage 0.0 (TID 4018, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 193.11 in stage 0.0 (TID 3653) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 971] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 193.12 in stage 0.0 (TID 4019, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 62.8 in stage 0.0 (TID 3573) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 972] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 62.9 in stage 0.0 (TID 4020, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 625.8 in stage 0.0 (TID 3684) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 973] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 625.9 in stage 0.0 (TID 4021, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 572.7 in stage 0.0 (TID 3685) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 974] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 572.8 in stage 0.0 (TID 4022, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 572, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 277.9 in stage 0.0 (TID 3664) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 975] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 277.10 in stage 0.0 (TID 4023, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Finished task 962.0 in stage 0.0 (TID 3540) in 2246 ms on jg1-w-51.c.maclab-ukbb.internal (executor 31) (579/30000) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 660.8 in stage 0.0 (TID 4024, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 660, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 974.0 in stage 0.0 (TID 4025, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 974, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 350.7 in stage 0.0 (TID 3638) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 976] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 808.5 in stage 0.0 (TID 3605) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 977] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 808.6 in stage 0.0 (TID 4026, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 808, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 350.8 in stage 0.0 (TID 4027, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 350, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 769.7 in stage 0.0 (TID 3678) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 978] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 326.7 in stage 0.0 (TID 3643) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 979] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 326.8 in stage 0.0 (TID 4028, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 326, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 567.7 in stage 0.0 (TID 3634) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 980] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 567.8 in stage 0.0 (TID 4029, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 567, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 878.5 in stage 0.0 (TID 3714) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 981] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 878.6 in stage 0.0 (TID 4030, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 878, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 812.5 in stage 0.0 (TID 3588) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 982] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 812.6 in stage 0.0 (TID 4031, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 812, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 769.8 in stage 0.0 (TID 4032, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 799.6 in stage 0.0 (TID 3717) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 983] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 668.6 in stage 0.0 (TID 3644) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 984] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 668.7 in stage 0.0 (TID 4033, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 668, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 790.6 in stage 0.0 (TID 3693) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 985] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 790.7 in stage 0.0 (TID 4034, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 790, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 442.9 in stage 0.0 (TID 3697) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 986] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 442.10 in stage 0.0 (TID 4035, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 799.7 in stage 0.0 (TID 4036, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 799, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 310.11 in stage 0.0 (TID 3755) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 987] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 497.9 in stage 0.0 (TID 3692) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 988] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 497.10 in stage 0.0 (TID 4037, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 415.12 in stage 0.0 (TID 3722) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 989] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 415.13 in stage 0.0 (TID 4038, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 425.9 in stage 0.0 (TID 3639) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 990] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 425.10 in stage 0.0 (TID 4039, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 310.12 in stage 0.0 (TID 4040, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 368.6 in stage 0.0 (TID 3252) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 991] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 474.9 in stage 0.0 (TID 3628) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 992] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 474.10 in stage 0.0 (TID 4041, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 597.8 in stage 0.0 (TID 3661) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 993] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 597.9 in stage 0.0 (TID 4042, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 478.9 in stage 0.0 (TID 3663) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 994] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 478.10 in stage 0.0 (TID 4043, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 368.7 in stage 0.0 (TID 4044, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 368, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 655.7 in stage 0.0 (TID 3497) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 995] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 833.4 in stage 0.0 (TID 3384) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 996] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 833.5 in stage 0.0 (TID 4045, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 833, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 518.9 in stage 0.0 (TID 3747) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 997] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 518.10 in stage 0.0 (TID 4046, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 644.8 in stage 0.0 (TID 3729) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 998] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 644.9 in stage 0.0 (TID 4047, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 246.9 in stage 0.0 (TID 3648) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 999] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 246.10 in stage 0.0 (TID 4048, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 655.8 in stage 0.0 (TID 4049, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 655, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 428.9 in stage 0.0 (TID 3293) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1000] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 151.11 in stage 0.0 (TID 3646) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1001] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 151.12 in stage 0.0 (TID 4050, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 428.10 in stage 0.0 (TID 4051, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 19.8 in stage 0.0 (TID 3543) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1002] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 19.9 in stage 0.0 (TID 4052, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 439.8 in stage 0.0 (TID 3227) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1003] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 281.10 in stage 0.0 (TID 3695) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1004] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 281.11 in stage 0.0 (TID 4053, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 439.9 in stage 0.0 (TID 4054, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 400.9 in stage 0.0 (TID 3759) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1005] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 441.10 in stage 0.0 (TID 3726) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1006] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 441.11 in stage 0.0 (TID 4055, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 903.4 in stage 0.0 (TID 3730) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1007] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 903.5 in stage 0.0 (TID 4056, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 903, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 177.9 in stage 0.0 (TID 3746) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1008] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 177.10 in stage 0.0 (TID 4057, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 1.14 in stage 0.0 (TID 3690) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1009] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 1.15 in stage 0.0 (TID 4058, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 461.7 in stage 0.0 (TID 3555) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1010] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 461.8 in stage 0.0 (TID 4059, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 461, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 670.5 in stage 0.0 (TID 3590) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1011] 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 670.6 in stage 0.0 (TID 4060, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 670, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Starting task 400.10 in stage 0.0 (TID 4061, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 942.1 in stage 0.0 (TID 3625) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1012] 2020-04-02 15:10:54 TaskSetManager: INFO: Lost task 758.7 in stage 0.0 (TID 3740) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1013] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 758.8 in stage 0.0 (TID 4062, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 758, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 449.12 in stage 0.0 (TID 3741) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1014] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 449.13 in stage 0.0 (TID 4063, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 716.6 in stage 0.0 (TID 3642) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1015] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 716.7 in stage 0.0 (TID 4064, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 716, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 392.10 in stage 0.0 (TID 3822) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1016] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 392.11 in stage 0.0 (TID 4065, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 56.8 in stage 0.0 (TID 3441) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1017] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 56.9 in stage 0.0 (TID 4066, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 225.10 in stage 0.0 (TID 3701) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1018] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 225.11 in stage 0.0 (TID 4067, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 707.8 in stage 0.0 (TID 3771) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1019] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 707.9 in stage 0.0 (TID 4068, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 111.9 in stage 0.0 (TID 3688) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1020] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 111.10 in stage 0.0 (TID 4069, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 767.6 in stage 0.0 (TID 3647) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1021] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 767.7 in stage 0.0 (TID 4070, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 767, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 346.9 in stage 0.0 (TID 3770) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1022] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 346.10 in stage 0.0 (TID 4071, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 513.10 in stage 0.0 (TID 3733) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1023] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 513.11 in stage 0.0 (TID 4072, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 80.7 in stage 0.0 (TID 3665) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1024] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 80.8 in stage 0.0 (TID 4073, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 80, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 273.7 in stage 0.0 (TID 3603) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1025] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 273.8 in stage 0.0 (TID 4074, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 273, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 673.8 in stage 0.0 (TID 3731) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1026] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 673.9 in stage 0.0 (TID 4075, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 942.2 in stage 0.0 (TID 4076, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 942, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 568.8 in stage 0.0 (TID 3749) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1027] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 274.10 in stage 0.0 (TID 3754) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1028] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 274.11 in stage 0.0 (TID 4077, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 75.12 in stage 0.0 (TID 3758) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1029] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 75.13 in stage 0.0 (TID 4078, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 495.9 in stage 0.0 (TID 3744) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1030] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 495.10 in stage 0.0 (TID 4079, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 856.6 in stage 0.0 (TID 3760) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1031] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 856.7 in stage 0.0 (TID 4080, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 856, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Finished task 965.0 in stage 0.0 (TID 3567) in 2316 ms on jg1-w-95.c.maclab-ukbb.internal (executor 74) (580/30000) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 568.9 in stage 0.0 (TID 4081, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 794.7 in stage 0.0 (TID 3777) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1032] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 794.8 in stage 0.0 (TID 4082, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 794, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 658.7 in stage 0.0 (TID 3674) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1033] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 658.8 in stage 0.0 (TID 4083, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 658, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 975.0 in stage 0.0 (TID 4084, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 975, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 142.11 in stage 0.0 (TID 3705) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1034] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 608.8 in stage 0.0 (TID 3750) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1035] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 608.9 in stage 0.0 (TID 4085, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 443.11 in stage 0.0 (TID 3757) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1036] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 443.12 in stage 0.0 (TID 4086, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Finished task 967.0 in stage 0.0 (TID 3614) in 2115 ms on jg1-w-32.c.maclab-ukbb.internal (executor 90) (581/30000) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 142.12 in stage 0.0 (TID 4087, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 796.5 in stage 0.0 (TID 3696) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1037] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 796.6 in stage 0.0 (TID 4088, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 796, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 718.8 in stage 0.0 (TID 3724) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1038] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 718.9 in stage 0.0 (TID 4089, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 486.9 in stage 0.0 (TID 3623) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1039] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 486.10 in stage 0.0 (TID 4090, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 912.0 in stage 0.0 (TID 2594) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1040] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 912.1 in stage 0.0 (TID 4091, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 912, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 761.7 in stage 0.0 (TID 3743) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1041] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 761.8 in stage 0.0 (TID 4092, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 761, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 614.7 in stage 0.0 (TID 3793) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1042] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 614.8 in stage 0.0 (TID 4093, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 195.12 in stage 0.0 (TID 3772) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1043] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 195.13 in stage 0.0 (TID 4094, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 847.6 in stage 0.0 (TID 3748) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1044] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 847.7 in stage 0.0 (TID 4095, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 847, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 950.1 in stage 0.0 (TID 3773) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1045] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 950.2 in stage 0.0 (TID 4096, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 950, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 742.8 in stage 0.0 (TID 3782) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1046] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 742.9 in stage 0.0 (TID 4097, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 746.7 in stage 0.0 (TID 3711) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1047] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 746.8 in stage 0.0 (TID 4098, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 777.7 in stage 0.0 (TID 3820) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1048] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 777.8 in stage 0.0 (TID 4099, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 976.0 in stage 0.0 (TID 4100, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 976, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 785.5 in stage 0.0 (TID 3725) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1049] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 659.4 in stage 0.0 (TID 3615) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1050] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 659.5 in stage 0.0 (TID 4101, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 659, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 828.6 in stage 0.0 (TID 3716) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1051] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 828.7 in stage 0.0 (TID 4102, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 828, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 20.12 in stage 0.0 (TID 3792) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1052] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 20.13 in stage 0.0 (TID 4103, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 276.9 in stage 0.0 (TID 3657) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1053] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 276.10 in stage 0.0 (TID 4104, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 840.6 in stage 0.0 (TID 3784) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1054] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 840.7 in stage 0.0 (TID 4105, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 840, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 330.7 in stage 0.0 (TID 3735) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1055] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 330.8 in stage 0.0 (TID 4106, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 330, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 487.11 in stage 0.0 (TID 3803) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1056] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 487.12 in stage 0.0 (TID 4107, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 39.11 in stage 0.0 (TID 3791) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1057] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 39.12 in stage 0.0 (TID 4108, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 951.1 in stage 0.0 (TID 3742) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1058] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 951.2 in stage 0.0 (TID 4109, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 951, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 202.11 in stage 0.0 (TID 3712) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1059] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 202.12 in stage 0.0 (TID 4110, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 681.5 in stage 0.0 (TID 3584) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1060] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 681.6 in stage 0.0 (TID 4111, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 681, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 170.11 in stage 0.0 (TID 3818) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1061] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 170.12 in stage 0.0 (TID 4112, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 128.8 in stage 0.0 (TID 3633) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1062] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 128.9 in stage 0.0 (TID 4113, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 81.11 in stage 0.0 (TID 3668) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1063] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 81.12 in stage 0.0 (TID 4114, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 358.7 in stage 0.0 (TID 3676) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1064] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 358.8 in stage 0.0 (TID 4115, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 358, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 785.6 in stage 0.0 (TID 4116, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 785, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 710.8 in stage 0.0 (TID 3736) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1065] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 955.1 in stage 0.0 (TID 3761) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1066] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 955.2 in stage 0.0 (TID 4117, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 955, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 694.8 in stage 0.0 (TID 3766) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1067] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 694.9 in stage 0.0 (TID 4118, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 187.12 in stage 0.0 (TID 3795) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1068] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 187.13 in stage 0.0 (TID 4119, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 710.9 in stage 0.0 (TID 4120, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 944.2 in stage 0.0 (TID 3834) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1069] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 520.8 in stage 0.0 (TID 3679) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1070] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 520.9 in stage 0.0 (TID 4121, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 944.3 in stage 0.0 (TID 4122, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 944, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 282.11 in stage 0.0 (TID 3780) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1071] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 282.12 in stage 0.0 (TID 4123, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 756.7 in stage 0.0 (TID 3756) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1072] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 756.8 in stage 0.0 (TID 4124, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 489.8 in stage 0.0 (TID 3859) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1073] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 721.8 in stage 0.0 (TID 3854) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1074] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 721.9 in stage 0.0 (TID 4125, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 489.9 in stage 0.0 (TID 4126, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 58.13 in stage 0.0 (TID 3796) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1075] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 532.6 in stage 0.0 (TID 3602) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1076] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 532.7 in stage 0.0 (TID 4127, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 532, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 58.14 in stage 0.0 (TID 4128, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 247.11 in stage 0.0 (TID 3720) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1077] 2020-04-02 15:10:55 TaskSetManager: INFO: Finished task 963.0 in stage 0.0 (TID 3559) in 2531 ms on jg1-w-84.c.maclab-ukbb.internal (executor 75) (582/30000) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 247.12 in stage 0.0 (TID 4129, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 818.6 in stage 0.0 (TID 3779) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1078] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 818.7 in stage 0.0 (TID 4130, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 818, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 977.0 in stage 0.0 (TID 4131, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 977, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 620.6 in stage 0.0 (TID 3687) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1079] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 27.10 in stage 0.0 (TID 3702) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1080] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 27.11 in stage 0.0 (TID 4132, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 334.10 in stage 0.0 (TID 3821) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1081] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 334.11 in stage 0.0 (TID 4133, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 604.7 in stage 0.0 (TID 3732) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1082] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 604.8 in stage 0.0 (TID 4134, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 604, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 462.7 in stage 0.0 (TID 3399) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1083] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 462.8 in stage 0.0 (TID 4135, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 462, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 620.7 in stage 0.0 (TID 4136, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 620, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 454.7 in stage 0.0 (TID 3694) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1084] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 212.10 in stage 0.0 (TID 3787) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1085] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 212.11 in stage 0.0 (TID 4137, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 359.8 in stage 0.0 (TID 3762) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1086] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 359.9 in stage 0.0 (TID 4138, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 814.6 in stage 0.0 (TID 3802) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1087] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 814.7 in stage 0.0 (TID 4139, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 814, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 109.10 in stage 0.0 (TID 3815) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1088] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 109.11 in stage 0.0 (TID 4140, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 454.8 in stage 0.0 (TID 4141, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 454, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 169.10 in stage 0.0 (TID 3775) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1089] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 169.11 in stage 0.0 (TID 4142, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Finished task 935.0 in stage 0.0 (TID 3006) in 5117 ms on jg1-w-46.c.maclab-ukbb.internal (executor 181) (583/30000) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 124.8 in stage 0.0 (TID 3437) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1090] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 124.9 in stage 0.0 (TID 4143, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 978.0 in stage 0.0 (TID 4144, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 978, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 348.9 in stage 0.0 (TID 3824) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1091] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 348.10 in stage 0.0 (TID 4145, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 153.10 in stage 0.0 (TID 3816) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1092] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 406.11 in stage 0.0 (TID 3783) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1093] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 406.12 in stage 0.0 (TID 4146, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 585.7 in stage 0.0 (TID 3706) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1094] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 585.8 in stage 0.0 (TID 4147, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 585, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 843.5 in stage 0.0 (TID 3778) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1095] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 843.6 in stage 0.0 (TID 4148, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 843, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 335.10 in stage 0.0 (TID 3827) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1096] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 335.11 in stage 0.0 (TID 4149, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 167.12 in stage 0.0 (TID 3790) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1097] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 167.13 in stage 0.0 (TID 4150, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 153.11 in stage 0.0 (TID 4151, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 517.9 in stage 0.0 (TID 3764) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1098] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 896.3 in stage 0.0 (TID 3707) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1099] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 896.4 in stage 0.0 (TID 4152, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 896, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 853.2 in stage 0.0 (TID 2501) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1100] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 853.3 in stage 0.0 (TID 4153, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 853, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 517.10 in stage 0.0 (TID 4154, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 712.4 in stage 0.0 (TID 3564) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1101] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 504.11 in stage 0.0 (TID 3829) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1102] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 504.12 in stage 0.0 (TID 4155, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 783.7 in stage 0.0 (TID 3751) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1103] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 783.8 in stage 0.0 (TID 4156, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 783, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 426.12 in stage 0.0 (TID 3848) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1104] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 426.13 in stage 0.0 (TID 4157, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 712.5 in stage 0.0 (TID 4158, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 712, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 493.8 in stage 0.0 (TID 3861) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1105] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 493.9 in stage 0.0 (TID 4159, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 299.7 in stage 0.0 (TID 3683) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1106] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 401.8 in stage 0.0 (TID 3734) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1107] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 401.9 in stage 0.0 (TID 4160, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 414.10 in stage 0.0 (TID 3789) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1108] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 414.11 in stage 0.0 (TID 4161, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 299.8 in stage 0.0 (TID 4162, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 299, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 979.0 in stage 0.0 (TID 4163, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 979, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 526.8 in stage 0.0 (TID 3738) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1109] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 121.10 in stage 0.0 (TID 3788) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1110] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 628.8 in stage 0.0 (TID 3765) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1111] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 628.9 in stage 0.0 (TID 4164, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 121.11 in stage 0.0 (TID 4165, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 423.12 in stage 0.0 (TID 3786) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1112] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 156.12 in stage 0.0 (TID 3869) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1113] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 156.13 in stage 0.0 (TID 4166, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 535.9 in stage 0.0 (TID 3768) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1114] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 535.10 in stage 0.0 (TID 4167, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 435.10 in stage 0.0 (TID 3708) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1115] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 435.11 in stage 0.0 (TID 4168, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 157.13 in stage 0.0 (TID 3852) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1116] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 157.14 in stage 0.0 (TID 4169, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 817.6 in stage 0.0 (TID 3753) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1117] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 817.7 in stage 0.0 (TID 4170, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 817, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 113.12 in stage 0.0 (TID 3847) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1118] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 113.13 in stage 0.0 (TID 4171, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 423.13 in stage 0.0 (TID 4172, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 829.7 in stage 0.0 (TID 3858) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1119] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 544.10 in stage 0.0 (TID 3845) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1120] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 544.11 in stage 0.0 (TID 4173, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 398.7 in stage 0.0 (TID 3739) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1121] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 398.8 in stage 0.0 (TID 4174, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 398, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 408.13 in stage 0.0 (TID 3826) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1122] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 408.14 in stage 0.0 (TID 4175, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 786.4 in stage 0.0 (TID 3571) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1123] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 786.5 in stage 0.0 (TID 4176, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 786, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 880.4 in stage 0.0 (TID 3781) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1124] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 880.5 in stage 0.0 (TID 4177, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 880, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 49.10 in stage 0.0 (TID 3745) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1125] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 49.11 in stage 0.0 (TID 4178, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 821.7 in stage 0.0 (TID 3884) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1126] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 821.8 in stage 0.0 (TID 4179, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 949.1 in stage 0.0 (TID 3801) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1127] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 949.2 in stage 0.0 (TID 4180, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 949, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 173.8 in stage 0.0 (TID 3669) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1128] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 173.9 in stage 0.0 (TID 4181, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 829.8 in stage 0.0 (TID 4182, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 829, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 578.7 in stage 0.0 (TID 3727) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1129] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 541.7 in stage 0.0 (TID 3630) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1130] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 541.8 in stage 0.0 (TID 4183, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 541, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 842.5 in stage 0.0 (TID 3794) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1131] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 842.6 in stage 0.0 (TID 4184, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 842, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 347.10 in stage 0.0 (TID 3860) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1132] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 347.11 in stage 0.0 (TID 4185, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 519.10 in stage 0.0 (TID 3836) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1133] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 519.11 in stage 0.0 (TID 4186, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 838.6 in stage 0.0 (TID 3866) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1134] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 838.7 in stage 0.0 (TID 4187, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 838, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 596.8 in stage 0.0 (TID 3842) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1135] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 596.9 in stage 0.0 (TID 4188, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 578.8 in stage 0.0 (TID 4189, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 578, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 526.9 in stage 0.0 (TID 4190, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 526, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 683.7 in stage 0.0 (TID 3797) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1136] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 759.7 in stage 0.0 (TID 3721) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1137] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 536.8 in stage 0.0 (TID 3814) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1138] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 536.9 in stage 0.0 (TID 4191, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 781.8 in stage 0.0 (TID 3868) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1139] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 781.9 in stage 0.0 (TID 4192, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 50.11 in stage 0.0 (TID 3850) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1140] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 50.12 in stage 0.0 (TID 4193, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 918.4 in stage 0.0 (TID 3912) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1141] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 918.5 in stage 0.0 (TID 4194, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 918, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 759.8 in stage 0.0 (TID 4195, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 759, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 405.7 in stage 0.0 (TID 3576) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1142] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 592.9 in stage 0.0 (TID 3823) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1143] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 592.10 in stage 0.0 (TID 4196, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 601.8 in stage 0.0 (TID 3846) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1144] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 601.9 in stage 0.0 (TID 4197, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 609.9 in stage 0.0 (TID 3862) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1145] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 609.10 in stage 0.0 (TID 4198, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 521.7 in stage 0.0 (TID 3698) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1146] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 521.8 in stage 0.0 (TID 4199, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 521, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 584.9 in stage 0.0 (TID 3798) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1147] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 584.10 in stage 0.0 (TID 4200, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 405.8 in stage 0.0 (TID 4201, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 405, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 275.12 in stage 0.0 (TID 3891) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1148] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 201.11 in stage 0.0 (TID 3812) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1149] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 201.12 in stage 0.0 (TID 4202, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 47.12 in stage 0.0 (TID 3806) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1150] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 47.13 in stage 0.0 (TID 4203, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 275.13 in stage 0.0 (TID 4204, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 354.9 in stage 0.0 (TID 3715) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1151] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 354.10 in stage 0.0 (TID 4205, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 943.1 in stage 0.0 (TID 3557) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1152] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 923.1 in stage 0.0 (TID 3335) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1153] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 923.2 in stage 0.0 (TID 4206, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 923, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Finished task 968.0 in stage 0.0 (TID 3675) in 2268 ms on jg1-w-24.c.maclab-ukbb.internal (executor 182) (584/30000) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 943.2 in stage 0.0 (TID 4207, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 943, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 289.10 in stage 0.0 (TID 3752) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1154] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 289.11 in stage 0.0 (TID 4208, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 0.16 in stage 0.0 (TID 3899) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1155] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 0.17 in stage 0.0 (TID 4209, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 554.9 in stage 0.0 (TID 3851) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1156] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 554.10 in stage 0.0 (TID 4210, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 175.10 in stage 0.0 (TID 3840) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1157] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 175.11 in stage 0.0 (TID 4211, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 946.1 in stage 0.0 (TID 3673) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1158] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 946.2 in stage 0.0 (TID 4212, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 946, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 727.8 in stage 0.0 (TID 3849) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1159] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 727.9 in stage 0.0 (TID 4213, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 476.9 in stage 0.0 (TID 3808) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1160] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 476.10 in stage 0.0 (TID 4214, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 209.10 in stage 0.0 (TID 3819) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1161] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 209.11 in stage 0.0 (TID 4215, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 948.1 in stage 0.0 (TID 3872) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1162] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 948.2 in stage 0.0 (TID 4216, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 948, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 683.8 in stage 0.0 (TID 4217, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 683, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 155.8 in stage 0.0 (TID 3737) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1163] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 409.11 in stage 0.0 (TID 3853) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1164] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 409.12 in stage 0.0 (TID 4218, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 500.8 in stage 0.0 (TID 3810) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1165] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 500.9 in stage 0.0 (TID 4219, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 152.9 in stage 0.0 (TID 3877) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1166] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 152.10 in stage 0.0 (TID 4220, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 803.7 in stage 0.0 (TID 3894) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1167] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 803.8 in stage 0.0 (TID 4221, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 803, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Finished task 956.0 in stage 0.0 (TID 3450) in 3384 ms on jg1-w-9.c.maclab-ukbb.internal (executor 77) (585/30000) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 155.9 in stage 0.0 (TID 4222, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 155, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 143.11 in stage 0.0 (TID 3832) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1168] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 143.12 in stage 0.0 (TID 4223, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 697.7 in stage 0.0 (TID 3776) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1169] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 697.8 in stage 0.0 (TID 4224, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 697, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 491.8 in stage 0.0 (TID 3799) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1170] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 491.9 in stage 0.0 (TID 4225, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 434.6 in stage 0.0 (TID 3662) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1171] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 434.7 in stage 0.0 (TID 4226, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 434, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Finished task 871.0 in stage 0.0 (TID 2014) in 10421 ms on jg1-w-66.c.maclab-ukbb.internal (executor 159) (586/30000) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 980.0 in stage 0.0 (TID 4227, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 980, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 822.4 in stage 0.0 (TID 3830) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1172] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 822.5 in stage 0.0 (TID 4228, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 822, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 194.12 in stage 0.0 (TID 3885) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1173] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 194.13 in stage 0.0 (TID 4229, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 612.7 in stage 0.0 (TID 3670) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1174] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 612.8 in stage 0.0 (TID 4230, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 612, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 709.8 in stage 0.0 (TID 3843) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1175] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 709.9 in stage 0.0 (TID 4231, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 607.6 in stage 0.0 (TID 3767) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1176] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 607.7 in stage 0.0 (TID 4232, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 607, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 791.7 in stage 0.0 (TID 3811) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1177] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 791.8 in stage 0.0 (TID 4233, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 791, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 981.0 in stage 0.0 (TID 4234, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 981, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 919.3 in stage 0.0 (TID 3926) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1178] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 789.7 in stage 0.0 (TID 3933) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1179] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 789.8 in stage 0.0 (TID 4235, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 331.11 in stage 0.0 (TID 3952) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1180] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 331.12 in stage 0.0 (TID 4236, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 390.9 in stage 0.0 (TID 3914) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1181] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 390.10 in stage 0.0 (TID 4237, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 919.4 in stage 0.0 (TID 4238, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 919, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 366.9 in stage 0.0 (TID 3879) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1182] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 366.10 in stage 0.0 (TID 4239, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 704.7 in stage 0.0 (TID 3800) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1183] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 185.11 in stage 0.0 (TID 3924) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1184] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 185.12 in stage 0.0 (TID 4240, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 399.14 in stage 0.0 (TID 3895) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1185] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 399.15 in stage 0.0 (TID 4241, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 57.9 in stage 0.0 (TID 3431) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1186] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 57.10 in stage 0.0 (TID 4242, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 515.7 in stage 0.0 (TID 3686) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1187] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 515.8 in stage 0.0 (TID 4243, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 515, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 220.12 in stage 0.0 (TID 3945) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1188] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 220.13 in stage 0.0 (TID 4244, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 784.4 in stage 0.0 (TID 3831) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1189] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 784.5 in stage 0.0 (TID 4245, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 784, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 186.10 in stage 0.0 (TID 3896) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1190] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 186.11 in stage 0.0 (TID 4246, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 704.8 in stage 0.0 (TID 4247, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 704, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 768.6 in stage 0.0 (TID 3769) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1191] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 680.9 in stage 0.0 (TID 3911) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1192] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 680.10 in stage 0.0 (TID 4248, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 188.11 in stage 0.0 (TID 3902) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1193] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 188.12 in stage 0.0 (TID 4249, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 947.2 in stage 0.0 (TID 3941) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1194] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 947.3 in stage 0.0 (TID 4250, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 947, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 768.7 in stage 0.0 (TID 4251, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 768, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 591.7 in stage 0.0 (TID 3856) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1195] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 778.6 in stage 0.0 (TID 3918) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1196] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 778.7 in stage 0.0 (TID 4252, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 778, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 591.8 in stage 0.0 (TID 4253, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 591, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 270.8 in stage 0.0 (TID 3774) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1197] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 627.9 in stage 0.0 (TID 3959) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1198] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 627.10 in stage 0.0 (TID 4254, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 702.6 in stage 0.0 (TID 3763) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1199] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 702.7 in stage 0.0 (TID 4255, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 702, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 834.6 in stage 0.0 (TID 3908) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1200] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 834.7 in stage 0.0 (TID 4256, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 834, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 292.9 in stage 0.0 (TID 3907) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1201] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 292.10 in stage 0.0 (TID 4257, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 475.11 in stage 0.0 (TID 3936) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1202] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 475.12 in stage 0.0 (TID 4258, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 355.12 in stage 0.0 (TID 4013) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1203] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 355.13 in stage 0.0 (TID 4259, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 699.8 in stage 0.0 (TID 3964) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1204] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 699.9 in stage 0.0 (TID 4260, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 206.12 in stage 0.0 (TID 3930) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1205] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 206.13 in stage 0.0 (TID 4261, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 971.0 in stage 0.0 (TID 3893) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1206] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 971.1 in stage 0.0 (TID 4262, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 971, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 593.10 in stage 0.0 (TID 3921) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1207] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 593.11 in stage 0.0 (TID 4263, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 516.8 in stage 0.0 (TID 3867) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1208] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 516.9 in stage 0.0 (TID 4264, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 270.9 in stage 0.0 (TID 4265, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 270, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 154.16 in stage 0.0 (TID 3889) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1209] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 351.12 in stage 0.0 (TID 3981) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1210] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 351.13 in stage 0.0 (TID 4266, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 154.17 in stage 0.0 (TID 4267, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 679.7 in stage 0.0 (TID 3835) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1211] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 198.12 in stage 0.0 (TID 3841) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1212] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 198.13 in stage 0.0 (TID 4268, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 3.11 in stage 0.0 (TID 3825) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1213] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 3.12 in stage 0.0 (TID 4269, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 820.5 in stage 0.0 (TID 3839) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1214] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 820.6 in stage 0.0 (TID 4270, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 820, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 64.9 in stage 0.0 (TID 3805) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1215] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 64.10 in stage 0.0 (TID 4271, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 687.6 in stage 0.0 (TID 3857) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1216] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 687.7 in stage 0.0 (TID 4272, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 687, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 162.8 in stage 0.0 (TID 3817) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1217] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 162.9 in stage 0.0 (TID 4273, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 162, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 506.10 in stage 0.0 (TID 3950) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1218] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 506.11 in stage 0.0 (TID 4274, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 679.8 in stage 0.0 (TID 4275, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 679, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 846.7 in stage 0.0 (TID 3957) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1219] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 160.9 in stage 0.0 (TID 3870) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1220] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 160.10 in stage 0.0 (TID 4276, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 345.10 in stage 0.0 (TID 3900) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1221] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 345.11 in stage 0.0 (TID 4277, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 852.6 in stage 0.0 (TID 3906) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1222] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 852.7 in stage 0.0 (TID 4278, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 852, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 507.8 in stage 0.0 (TID 3863) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1223] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 507.9 in stage 0.0 (TID 4279, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 846.8 in stage 0.0 (TID 4280, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 846, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 492.9 in stage 0.0 (TID 3903) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1224] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 728.9 in stage 0.0 (TID 3954) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1225] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 728.10 in stage 0.0 (TID 4281, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 605.6 in stage 0.0 (TID 3804) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1226] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 605.7 in stage 0.0 (TID 4282, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 605, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 427.10 in stage 0.0 (TID 3883) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1227] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 427.11 in stage 0.0 (TID 4283, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 492.10 in stage 0.0 (TID 4284, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 780.8 in stage 0.0 (TID 3980) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1228] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 744.8 in stage 0.0 (TID 3873) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1229] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 744.9 in stage 0.0 (TID 4285, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 333.11 in stage 0.0 (TID 3973) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1230] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 333.12 in stage 0.0 (TID 4286, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 854.4 in stage 0.0 (TID 3901) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1231] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 854.5 in stage 0.0 (TID 4287, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 854, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 693.5 in stage 0.0 (TID 3844) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1232] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 693.6 in stage 0.0 (TID 4288, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 693, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 165.10 in stage 0.0 (TID 3898) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1233] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 165.11 in stage 0.0 (TID 4289, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 288.10 in stage 0.0 (TID 3944) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1234] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 288.11 in stage 0.0 (TID 4290, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 793.6 in stage 0.0 (TID 3838) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1235] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 793.7 in stage 0.0 (TID 4291, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 793, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 444.11 in stage 0.0 (TID 3916) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1236] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 444.12 in stage 0.0 (TID 4292, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 780.9 in stage 0.0 (TID 4293, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 391.6 in stage 0.0 (TID 3864) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1237] 2020-04-02 15:10:55 TaskSetManager: INFO: Lost task 719.9 in stage 0.0 (TID 3875) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1238] 2020-04-02 15:10:55 TaskSetManager: INFO: Starting task 719.10 in stage 0.0 (TID 4294, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 511.10 in stage 0.0 (TID 3972) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1239] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 511.11 in stage 0.0 (TID 4295, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 360.9 in stage 0.0 (TID 3785) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1240] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 360.10 in stage 0.0 (TID 4296, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 810.5 in stage 0.0 (TID 3828) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1241] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 810.6 in stage 0.0 (TID 4297, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 810, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 53.14 in stage 0.0 (TID 4003) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1242] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 53.15 in stage 0.0 (TID 4298, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 774.7 in stage 0.0 (TID 3919) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1243] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 774.8 in stage 0.0 (TID 4299, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 774, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 391.7 in stage 0.0 (TID 4300, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 391, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 539.7 in stage 0.0 (TID 3871) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1244] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 939.2 in stage 0.0 (TID 3966) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1245] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 939.3 in stage 0.0 (TID 4301, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 939, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 762.9 in stage 0.0 (TID 3994) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1246] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 762.10 in stage 0.0 (TID 4302, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 488.8 in stage 0.0 (TID 3855) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1247] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 488.9 in stage 0.0 (TID 4303, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 776.7 in stage 0.0 (TID 3931) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1248] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 776.8 in stage 0.0 (TID 4304, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 776, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 779.6 in stage 0.0 (TID 3897) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1249] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 779.7 in stage 0.0 (TID 4305, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 779, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 769.8 in stage 0.0 (TID 4032) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1250] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 769.9 in stage 0.0 (TID 4306, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 764.7 in stage 0.0 (TID 3949) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1251] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 764.8 in stage 0.0 (TID 4307, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 764, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 224.9 in stage 0.0 (TID 3887) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1252] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 224.10 in stage 0.0 (TID 4308, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 806.6 in stage 0.0 (TID 3881) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1253] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 806.7 in stage 0.0 (TID 4309, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 806, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 964.1 in stage 0.0 (TID 3987) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1254] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 964.2 in stage 0.0 (TID 4310, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 964, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 217.9 in stage 0.0 (TID 3865) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1255] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 217.10 in stage 0.0 (TID 4311, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 903.5 in stage 0.0 (TID 4056) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1256] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 903.6 in stage 0.0 (TID 4312, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 903, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 804.5 in stage 0.0 (TID 3915) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1257] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 804.6 in stage 0.0 (TID 4313, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 804, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 736.8 in stage 0.0 (TID 4018) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1258] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 736.9 in stage 0.0 (TID 4314, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 850.4 in stage 0.0 (TID 3813) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1259] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 850.5 in stage 0.0 (TID 4315, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 850, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 897.3 in stage 0.0 (TID 3809) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1260] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 897.4 in stage 0.0 (TID 4316, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 897, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 310.12 in stage 0.0 (TID 4040) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1261] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 310.13 in stage 0.0 (TID 4317, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 878.6 in stage 0.0 (TID 4030) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1262] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 878.7 in stage 0.0 (TID 4318, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 878, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 539.8 in stage 0.0 (TID 4319, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 539, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 982.0 in stage 0.0 (TID 4320, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 982, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 415.13 in stage 0.0 (TID 4038) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1263] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 327.10 in stage 0.0 (TID 4016) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1264] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 303.11 in stage 0.0 (TID 4010) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1265] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 303.12 in stage 0.0 (TID 4321, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 690.8 in stage 0.0 (TID 3976) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1266] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 690.9 in stage 0.0 (TID 4322, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 505.10 in stage 0.0 (TID 3937) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1267] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 505.11 in stage 0.0 (TID 4323, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 916.3 in stage 0.0 (TID 3909) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1268] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 916.4 in stage 0.0 (TID 4324, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 916, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 199.12 in stage 0.0 (TID 3995) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1269] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 199.13 in stage 0.0 (TID 4325, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 193.12 in stage 0.0 (TID 4019) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1270] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 193.13 in stage 0.0 (TID 4326, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 839.5 in stage 0.0 (TID 3955) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1271] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 839.6 in stage 0.0 (TID 4327, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 839, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 151.12 in stage 0.0 (TID 4050) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1272] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 151.13 in stage 0.0 (TID 4328, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 327.11 in stage 0.0 (TID 4329, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 460.9 in stage 0.0 (TID 3978) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1273] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 166.11 in stage 0.0 (TID 3979) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1274] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 166.12 in stage 0.0 (TID 4330, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 634.7 in stage 0.0 (TID 3942) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1275] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 634.8 in stage 0.0 (TID 4331, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 634, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 140.10 in stage 0.0 (TID 4006) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1276] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 140.11 in stage 0.0 (TID 4332, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 477.5 in stage 0.0 (TID 3677) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1277] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 477.6 in stage 0.0 (TID 4333, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 477, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 460.10 in stage 0.0 (TID 4334, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 125.9 in stage 0.0 (TID 3922) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1278] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 654.7 in stage 0.0 (TID 3958) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1279] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 654.8 in stage 0.0 (TID 4335, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 654, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 51.10 in stage 0.0 (TID 3833) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1280] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 51.11 in stage 0.0 (TID 4336, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 125.10 in stage 0.0 (TID 4337, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 415.14 in stage 0.0 (TID 4338, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 983.0 in stage 0.0 (TID 4339, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 983, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 215.6 in stage 0.0 (TID 3723) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1281] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 449.13 in stage 0.0 (TID 4063) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1282] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 594.8 in stage 0.0 (TID 3991) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1283] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 855.6 in stage 0.0 (TID 3971) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1284] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 855.7 in stage 0.0 (TID 4340, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 855, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 392.11 in stage 0.0 (TID 4065) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1285] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 392.12 in stage 0.0 (TID 4341, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 765.7 in stage 0.0 (TID 3984) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1286] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 765.8 in stage 0.0 (TID 4342, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 765, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 63.13 in stage 0.0 (TID 3975) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1287] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 63.14 in stage 0.0 (TID 4343, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 798.5 in stage 0.0 (TID 3703) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1288] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 798.6 in stage 0.0 (TID 4344, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 798, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 158.12 in stage 0.0 (TID 3946) on jg1-w-66.c.maclab-ukbb.internal, executor 159: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1289] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 158.13 in stage 0.0 (TID 4345, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 372.8 in stage 0.0 (TID 3956) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1290] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 372.9 in stage 0.0 (TID 4346, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 594.9 in stage 0.0 (TID 4347, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 954.1 in stage 0.0 (TID 3890) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1291] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 502.10 in stage 0.0 (TID 3998) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1292] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 502.11 in stage 0.0 (TID 4348, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 274.11 in stage 0.0 (TID 4077) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1293] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 274.12 in stage 0.0 (TID 4349, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 433.7 in stage 0.0 (TID 3886) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1294] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 433.8 in stage 0.0 (TID 4350, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 433, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 130.7 in stage 0.0 (TID 3962) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1295] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 130.8 in stage 0.0 (TID 4351, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 130, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 442.10 in stage 0.0 (TID 4035) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1296] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 442.11 in stage 0.0 (TID 4352, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 631.7 in stage 0.0 (TID 3917) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1297] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 631.8 in stage 0.0 (TID 4353, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 631, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 309.8 in stage 0.0 (TID 3892) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1298] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 309.9 in stage 0.0 (TID 4354, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 309, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 954.2 in stage 0.0 (TID 4355, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 954, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 790.7 in stage 0.0 (TID 4034) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1299] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 568.9 in stage 0.0 (TID 4081) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1300] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 568.10 in stage 0.0 (TID 4356, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 31.11 in stage 0.0 (TID 3969) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1301] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 31.12 in stage 0.0 (TID 4357, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 730.8 in stage 0.0 (TID 3977) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1302] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 730.9 in stage 0.0 (TID 4358, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 730, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 799.7 in stage 0.0 (TID 4036) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1303] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 799.8 in stage 0.0 (TID 4359, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 799, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 496.10 in stage 0.0 (TID 3992) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1304] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 496.11 in stage 0.0 (TID 4360, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 205.11 in stage 0.0 (TID 3982) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1305] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 205.12 in stage 0.0 (TID 4361, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 459.10 in stage 0.0 (TID 3925) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1306] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 459.11 in stage 0.0 (TID 4362, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 777.8 in stage 0.0 (TID 4099) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1307] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 777.9 in stage 0.0 (TID 4363, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 598.10 in stage 0.0 (TID 3963) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1308] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 598.11 in stage 0.0 (TID 4364, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 861.6 in stage 0.0 (TID 3910) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1309] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 861.7 in stage 0.0 (TID 4365, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 861, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 657.7 in stage 0.0 (TID 4017) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1310] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 657.8 in stage 0.0 (TID 4366, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 657, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 644.9 in stage 0.0 (TID 4047) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1311] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 644.10 in stage 0.0 (TID 4367, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 775.6 in stage 0.0 (TID 3923) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1312] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 775.7 in stage 0.0 (TID 4368, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 775, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 758.8 in stage 0.0 (TID 4062) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1313] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 758.9 in stage 0.0 (TID 4369, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 758, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 192.9 in stage 0.0 (TID 3932) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1314] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 192.10 in stage 0.0 (TID 4370, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 142.12 in stage 0.0 (TID 4087) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1315] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 142.13 in stage 0.0 (TID 4371, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 54.8 in stage 0.0 (TID 3928) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1316] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 54.9 in stage 0.0 (TID 4372, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 54, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 790.8 in stage 0.0 (TID 4373, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 790, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 400.10 in stage 0.0 (TID 4061) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1317] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 177.10 in stage 0.0 (TID 4057) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1318] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 177.11 in stage 0.0 (TID 4374, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 428.10 in stage 0.0 (TID 4051) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1319] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 428.11 in stage 0.0 (TID 4375, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 281.11 in stage 0.0 (TID 4053) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1320] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 281.12 in stage 0.0 (TID 4376, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 195.13 in stage 0.0 (TID 4094) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1321] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 195.14 in stage 0.0 (TID 4377, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 197.10 in stage 0.0 (TID 3986) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1322] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 197.11 in stage 0.0 (TID 4378, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 608.9 in stage 0.0 (TID 4085) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1323] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 608.10 in stage 0.0 (TID 4379, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 196.10 in stage 0.0 (TID 3970) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1324] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 196.11 in stage 0.0 (TID 4380, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 361.8 in stage 0.0 (TID 3874) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1325] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 361.9 in stage 0.0 (TID 4381, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 361, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 707.9 in stage 0.0 (TID 4068) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1326] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 707.10 in stage 0.0 (TID 4382, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 106.10 in stage 0.0 (TID 3961) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1327] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 106.11 in stage 0.0 (TID 4383, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 794.8 in stage 0.0 (TID 4082) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1328] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 794.9 in stage 0.0 (TID 4384, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 794, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 443.12 in stage 0.0 (TID 4086) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1329] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 443.13 in stage 0.0 (TID 4385, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 400.11 in stage 0.0 (TID 4386, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 653.8 in stage 0.0 (TID 4000) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1330] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 847.7 in stage 0.0 (TID 4095) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1331] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 847.8 in stage 0.0 (TID 4387, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 847, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 698.7 in stage 0.0 (TID 3985) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1332] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 698.8 in stage 0.0 (TID 4388, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 698, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 508.7 in stage 0.0 (TID 3880) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1333] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 508.8 in stage 0.0 (TID 4389, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 508, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 218.9 in stage 0.0 (TID 3965) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1334] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 218.10 in stage 0.0 (TID 4390, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 653.9 in stage 0.0 (TID 4391, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 653, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 449.14 in stage 0.0 (TID 4392, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 75.13 in stage 0.0 (TID 4078) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1335] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 668.7 in stage 0.0 (TID 4033) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1336] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 225.11 in stage 0.0 (TID 4067) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1337] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 225.12 in stage 0.0 (TID 4393, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 849.6 in stage 0.0 (TID 3960) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1338] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 849.7 in stage 0.0 (TID 4394, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 849, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 950.2 in stage 0.0 (TID 4096) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1339] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 950.3 in stage 0.0 (TID 4395, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 950, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 346.10 in stage 0.0 (TID 4071) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1340] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 346.11 in stage 0.0 (TID 4396, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 668.8 in stage 0.0 (TID 4397, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 668, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 713.8 in stage 0.0 (TID 3948) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1341] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 713.9 in stage 0.0 (TID 4398, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 625.9 in stage 0.0 (TID 4021) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1342] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 710.9 in stage 0.0 (TID 4120) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1343] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 710.10 in stage 0.0 (TID 4399, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 170.12 in stage 0.0 (TID 4112) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1344] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 170.13 in stage 0.0 (TID 4400, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 20.13 in stage 0.0 (TID 4103) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1345] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 20.14 in stage 0.0 (TID 4401, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 280.9 in stage 0.0 (TID 3951) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1346] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 280.10 in stage 0.0 (TID 4402, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 248.10 in stage 0.0 (TID 3876) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1347] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 248.11 in stage 0.0 (TID 4403, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 107.9 in stage 0.0 (TID 3938) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1348] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 107.10 in stage 0.0 (TID 4404, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 625.10 in stage 0.0 (TID 4405, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 972.0 in stage 0.0 (TID 3943) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1349] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 862.5 in stage 0.0 (TID 3967) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1350] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 862.6 in stage 0.0 (TID 4406, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 862, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 848.7 in stage 0.0 (TID 4005) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1351] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 848.8 in stage 0.0 (TID 4407, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 848, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 715.7 in stage 0.0 (TID 3905) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1352] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 715.8 in stage 0.0 (TID 4408, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 715, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 972.1 in stage 0.0 (TID 4409, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 972, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 970.0 in stage 0.0 (TID 3882) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1353] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 957.1 in stage 0.0 (TID 3913) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1354] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 957.2 in stage 0.0 (TID 4410, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 957, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 257.12 in stage 0.0 (TID 3990) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1355] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 257.13 in stage 0.0 (TID 4411, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 497.10 in stage 0.0 (TID 4037) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1356] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 497.11 in stage 0.0 (TID 4412, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 1.15 in stage 0.0 (TID 4058) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1357] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 1.16 in stage 0.0 (TID 4413, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 655.8 in stage 0.0 (TID 4049) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1358] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 655.9 in stage 0.0 (TID 4414, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 655, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 334.11 in stage 0.0 (TID 4133) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1359] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 334.12 in stage 0.0 (TID 4415, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 970.1 in stage 0.0 (TID 4416, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 970, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 487.12 in stage 0.0 (TID 4107) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1360] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 91.13 in stage 0.0 (TID 3920) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1361] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 91.14 in stage 0.0 (TID 4417, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 191.10 in stage 0.0 (TID 3999) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1362] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 191.11 in stage 0.0 (TID 4418, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 821.8 in stage 0.0 (TID 4179) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1363] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 821.9 in stage 0.0 (TID 4419, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 703.7 in stage 0.0 (TID 3989) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1364] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 703.8 in stage 0.0 (TID 4420, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 703, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 721.9 in stage 0.0 (TID 4125) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1365] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 721.10 in stage 0.0 (TID 4421, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 614.8 in stage 0.0 (TID 4093) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1366] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 614.9 in stage 0.0 (TID 4422, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 955.2 in stage 0.0 (TID 4117) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1367] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 955.3 in stage 0.0 (TID 4423, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 955, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 487.13 in stage 0.0 (TID 4424, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 691.6 in stage 0.0 (TID 3947) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1368] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 691.7 in stage 0.0 (TID 4425, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 691, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 667.6 in stage 0.0 (TID 3993) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1369] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 818.7 in stage 0.0 (TID 4130) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1370] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 818.8 in stage 0.0 (TID 4426, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 818, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 742.9 in stage 0.0 (TID 4097) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1371] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 742.10 in stage 0.0 (TID 4427, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 242.9 in stage 0.0 (TID 3807) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1372] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 242.10 in stage 0.0 (TID 4428, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 111.10 in stage 0.0 (TID 4069) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1373] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 111.11 in stage 0.0 (TID 4429, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 667.7 in stage 0.0 (TID 4430, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 667, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 418.10 in stage 0.0 (TID 3968) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1374] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 187.13 in stage 0.0 (TID 4119) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1375] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 187.14 in stage 0.0 (TID 4431, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 973.0 in stage 0.0 (TID 4012) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1376] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 973.1 in stage 0.0 (TID 4432, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 973, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 41.9 in stage 0.0 (TID 3996) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1377] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 41.10 in stage 0.0 (TID 4433, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 350.8 in stage 0.0 (TID 4027) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1378] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 350.9 in stage 0.0 (TID 4434, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 350, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 544.11 in stage 0.0 (TID 4173) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1379] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 544.12 in stage 0.0 (TID 4435, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 418.11 in stage 0.0 (TID 4436, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 418, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 441.11 in stage 0.0 (TID 4055) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1380] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 441.12 in stage 0.0 (TID 4437, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 746.8 in stage 0.0 (TID 4098) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1381] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 944.3 in stage 0.0 (TID 4122) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1382] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 944.4 in stage 0.0 (TID 4438, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 944, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 746.9 in stage 0.0 (TID 4439, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 660.8 in stage 0.0 (TID 4024) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1383] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 725.6 in stage 0.0 (TID 3904) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1384] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 725.7 in stage 0.0 (TID 4440, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 725, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 828.7 in stage 0.0 (TID 4102) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1385] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 828.8 in stage 0.0 (TID 4441, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 828, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 756.8 in stage 0.0 (TID 4124) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1386] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 756.9 in stage 0.0 (TID 4442, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 660.9 in stage 0.0 (TID 4443, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 660, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 340.9 in stage 0.0 (TID 4009) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1387] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 673.9 in stage 0.0 (TID 4075) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1388] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 673.10 in stage 0.0 (TID 4444, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 462.8 in stage 0.0 (TID 4135) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1389] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 462.9 in stage 0.0 (TID 4445, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 462, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 504.12 in stage 0.0 (TID 4155) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1390] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 504.13 in stage 0.0 (TID 4446, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 518.10 in stage 0.0 (TID 4046) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1391] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 518.11 in stage 0.0 (TID 4447, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Finished task 969.0 in stage 0.0 (TID 3878) in 2443 ms on jg1-w-34.c.maclab-ukbb.internal (executor 163) (587/30000) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 340.10 in stage 0.0 (TID 4448, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 788.3 in stage 0.0 (TID 3929) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1392] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 788.4 in stage 0.0 (TID 4449, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 788, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 75.14 in stage 0.0 (TID 4450, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 439.9 in stage 0.0 (TID 4054) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1393] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 694.9 in stage 0.0 (TID 4118) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1394] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 694.10 in stage 0.0 (TID 4451, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 348.10 in stage 0.0 (TID 4145) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1395] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 348.11 in stage 0.0 (TID 4452, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 951.2 in stage 0.0 (TID 4109) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1396] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 951.3 in stage 0.0 (TID 4453, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 951, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 583.7 in stage 0.0 (TID 3953) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1397] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 583.8 in stage 0.0 (TID 4454, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 583, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 113.13 in stage 0.0 (TID 4171) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1398] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 113.14 in stage 0.0 (TID 4455, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 439.10 in stage 0.0 (TID 4456, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 513.11 in stage 0.0 (TID 4072) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1399] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 408.14 in stage 0.0 (TID 4175) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1400] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 408.15 in stage 0.0 (TID 4457, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 81.12 in stage 0.0 (TID 4114) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1401] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 81.13 in stage 0.0 (TID 4458, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 39.12 in stage 0.0 (TID 4108) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1402] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 39.13 in stage 0.0 (TID 4459, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 246.10 in stage 0.0 (TID 4048) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1403] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 246.11 in stage 0.0 (TID 4460, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 658.8 in stage 0.0 (TID 4083) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1404] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 658.9 in stage 0.0 (TID 4461, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 658, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 513.12 in stage 0.0 (TID 4462, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 796.6 in stage 0.0 (TID 4088) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1405] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 489.9 in stage 0.0 (TID 4126) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1406] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 489.10 in stage 0.0 (TID 4463, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 495.10 in stage 0.0 (TID 4079) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1407] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 495.11 in stage 0.0 (TID 4464, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 796.7 in stage 0.0 (TID 4465, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 796, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 326.8 in stage 0.0 (TID 4028) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1408] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 729.6 in stage 0.0 (TID 3888) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1409] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 729.7 in stage 0.0 (TID 4466, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 729, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 326.9 in stage 0.0 (TID 4467, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 326, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 960.1 in stage 0.0 (TID 3983) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1410] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 425.10 in stage 0.0 (TID 4039) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1411] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 425.11 in stage 0.0 (TID 4468, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 407.11 in stage 0.0 (TID 3988) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1412] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 407.12 in stage 0.0 (TID 4469, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 960.2 in stage 0.0 (TID 4470, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 960, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 215.7 in stage 0.0 (TID 4471, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 215, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 282.12 in stage 0.0 (TID 4123) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1413] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 164.9 in stage 0.0 (TID 4014) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1414] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 856.7 in stage 0.0 (TID 4080) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1415] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 856.8 in stage 0.0 (TID 4472, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 856, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 435.11 in stage 0.0 (TID 4168) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1416] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 435.12 in stage 0.0 (TID 4473, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 56.9 in stage 0.0 (TID 4066) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1417] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 56.10 in stage 0.0 (TID 4474, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 164.10 in stage 0.0 (TID 4475, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 58.14 in stage 0.0 (TID 4128) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1418] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 275.13 in stage 0.0 (TID 4204) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1419] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 275.14 in stage 0.0 (TID 4476, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 817.7 in stage 0.0 (TID 4170) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1420] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 817.8 in stage 0.0 (TID 4477, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 817, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 169.11 in stage 0.0 (TID 4142) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1421] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 169.12 in stage 0.0 (TID 4478, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 543.9 in stage 0.0 (TID 3997) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1422] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 543.10 in stage 0.0 (TID 4479, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 711.7 in stage 0.0 (TID 3939) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1423] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 711.8 in stage 0.0 (TID 4480, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 711, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 716.7 in stage 0.0 (TID 4064) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1424] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 716.8 in stage 0.0 (TID 4481, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 716, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 670.6 in stage 0.0 (TID 4060) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1425] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 670.7 in stage 0.0 (TID 4482, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 670, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 542.6 in stage 0.0 (TID 3974) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1426] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 542.7 in stage 0.0 (TID 4483, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 542, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 335.11 in stage 0.0 (TID 4149) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1427] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 335.12 in stage 0.0 (TID 4484, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 438.8 in stage 0.0 (TID 3940) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1428] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 438.9 in stage 0.0 (TID 4485, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 438, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 152.10 in stage 0.0 (TID 4220) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1429] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 152.11 in stage 0.0 (TID 4486, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 58.15 in stage 0.0 (TID 4487, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 282.13 in stage 0.0 (TID 4488, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 121.11 in stage 0.0 (TID 4165) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1430] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 912.1 in stage 0.0 (TID 4091) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1431] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 19.9 in stage 0.0 (TID 4052) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1432] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 19.10 in stage 0.0 (TID 4489, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 912.2 in stage 0.0 (TID 4490, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 912, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 220.13 in stage 0.0 (TID 4244) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1433] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 414.11 in stage 0.0 (TID 4161) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1434] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 414.12 in stage 0.0 (TID 4491, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 220.14 in stage 0.0 (TID 4492, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 157.14 in stage 0.0 (TID 4169) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1435] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 423.13 in stage 0.0 (TID 4172) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1436] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 423.14 in stage 0.0 (TID 4493, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 0.17 in stage 0.0 (TID 4209) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1437] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 0.18 in stage 0.0 (TID 4494, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 843.6 in stage 0.0 (TID 4148) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1438] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 843.7 in stage 0.0 (TID 4495, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 843, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 519.11 in stage 0.0 (TID 4186) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1439] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 519.12 in stage 0.0 (TID 4496, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 659.5 in stage 0.0 (TID 4101) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1440] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 659.6 in stage 0.0 (TID 4497, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 659, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 157.15 in stage 0.0 (TID 4498, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 62.9 in stage 0.0 (TID 4020) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1441] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 517.10 in stage 0.0 (TID 4154) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1442] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 517.11 in stage 0.0 (TID 4499, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 62.10 in stage 0.0 (TID 4500, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 212.11 in stage 0.0 (TID 4137) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1443] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 359.9 in stage 0.0 (TID 4138) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1444] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 359.10 in stage 0.0 (TID 4501, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 212.12 in stage 0.0 (TID 4502, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 109.11 in stage 0.0 (TID 4140) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1445] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 241.8 in stage 0.0 (TID 4001) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1446] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 241.9 in stage 0.0 (TID 4503, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 241, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 949.2 in stage 0.0 (TID 4180) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1447] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 949.3 in stage 0.0 (TID 4504, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 949, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 109.12 in stage 0.0 (TID 4505, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 109, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 399.15 in stage 0.0 (TID 4241) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1448] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 399.16 in stage 0.0 (TID 4506, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 781.9 in stage 0.0 (TID 4192) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1449] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 553.6 in stage 0.0 (TID 4011) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1450] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 553.7 in stage 0.0 (TID 4507, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 553, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 167.13 in stage 0.0 (TID 4150) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1451] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 167.14 in stage 0.0 (TID 4508, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 567.8 in stage 0.0 (TID 4029) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1452] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 567.9 in stage 0.0 (TID 4509, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 567, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 406.12 in stage 0.0 (TID 4146) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1453] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 406.13 in stage 0.0 (TID 4510, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 781.10 in stage 0.0 (TID 4511, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 156.13 in stage 0.0 (TID 4166) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1454] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 486.10 in stage 0.0 (TID 4090) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1455] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 486.11 in stage 0.0 (TID 4512, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 474.10 in stage 0.0 (TID 4041) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1456] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 474.11 in stage 0.0 (TID 4513, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 584.10 in stage 0.0 (TID 4200) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1457] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 584.11 in stage 0.0 (TID 4514, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 947.3 in stage 0.0 (TID 4250) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1458] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 947.4 in stage 0.0 (TID 4515, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 947, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 153.11 in stage 0.0 (TID 4151) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1459] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 153.12 in stage 0.0 (TID 4516, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 194.13 in stage 0.0 (TID 4229) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1460] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 194.14 in stage 0.0 (TID 4517, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 814.7 in stage 0.0 (TID 4139) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1461] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 814.8 in stage 0.0 (TID 4518, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 814, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 156.14 in stage 0.0 (TID 4519, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 535.10 in stage 0.0 (TID 4167) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1462] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 227.8 in stage 0.0 (TID 3934) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1463] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 227.9 in stage 0.0 (TID 4520, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 227, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 840.7 in stage 0.0 (TID 4105) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1464] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 840.8 in stage 0.0 (TID 4521, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 840, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 812.6 in stage 0.0 (TID 4031) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1465] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 812.7 in stage 0.0 (TID 4522, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 812, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 597.9 in stage 0.0 (TID 4042) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1466] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 597.10 in stage 0.0 (TID 4523, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 918.5 in stage 0.0 (TID 4194) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1467] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 918.6 in stage 0.0 (TID 4524, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 918, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 128.9 in stage 0.0 (TID 4113) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1468] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 128.10 in stage 0.0 (TID 4525, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 247.12 in stage 0.0 (TID 4129) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1469] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 247.13 in stage 0.0 (TID 4526, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 785.6 in stage 0.0 (TID 4116) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1470] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 785.7 in stage 0.0 (TID 4527, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 785, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 535.11 in stage 0.0 (TID 4528, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 290.7 in stage 0.0 (TID 3598) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1471] 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 514.7 in stage 0.0 (TID 4004) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1472] 2020-04-02 15:10:56 TaskSetManager: INFO: Starting task 514.8 in stage 0.0 (TID 4529, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 514, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:56 TaskSetManager: INFO: Lost task 699.9 in stage 0.0 (TID 4260) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1473] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 699.10 in stage 0.0 (TID 4530, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 601.9 in stage 0.0 (TID 4197) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1474] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 601.10 in stage 0.0 (TID 4531, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 347.11 in stage 0.0 (TID 4185) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1475] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 347.12 in stage 0.0 (TID 4532, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 80.8 in stage 0.0 (TID 4073) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1476] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 80.9 in stage 0.0 (TID 4533, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 80, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 290.8 in stage 0.0 (TID 4534, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 290, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 942.2 in stage 0.0 (TID 4076) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1477] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 783.8 in stage 0.0 (TID 4156) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1478] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 783.9 in stage 0.0 (TID 4535, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 783, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 803.8 in stage 0.0 (TID 4221) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1479] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 803.9 in stage 0.0 (TID 4536, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 803, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 520.9 in stage 0.0 (TID 4121) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1480] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 520.10 in stage 0.0 (TID 4537, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 942.3 in stage 0.0 (TID 4538, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 942, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 592.10 in stage 0.0 (TID 4196) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1481] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 532.7 in stage 0.0 (TID 4127) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1482] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 532.8 in stage 0.0 (TID 4539, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 532, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 592.11 in stage 0.0 (TID 4540, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 461.8 in stage 0.0 (TID 4059) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1483] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 351.13 in stage 0.0 (TID 4266) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1484] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 351.14 in stage 0.0 (TID 4541, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 786.5 in stage 0.0 (TID 4176) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1485] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 786.6 in stage 0.0 (TID 4542, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 786, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 880.5 in stage 0.0 (TID 4177) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1486] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 880.6 in stage 0.0 (TID 4543, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 880, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 289.11 in stage 0.0 (TID 4208) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1487] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 289.12 in stage 0.0 (TID 4544, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 461.9 in stage 0.0 (TID 4545, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 461, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 292.10 in stage 0.0 (TID 4257) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1488] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 789.8 in stage 0.0 (TID 4235) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1489] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 789.9 in stage 0.0 (TID 4546, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 50.12 in stage 0.0 (TID 4193) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1490] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 50.13 in stage 0.0 (TID 4547, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 554.10 in stage 0.0 (TID 4210) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1491] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 554.11 in stage 0.0 (TID 4548, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 853.3 in stage 0.0 (TID 4153) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1492] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 853.4 in stage 0.0 (TID 4549, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 853, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 536.9 in stage 0.0 (TID 4191) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1493] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 536.10 in stage 0.0 (TID 4550, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 919.4 in stage 0.0 (TID 4238) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1494] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 919.5 in stage 0.0 (TID 4551, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 919, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 585.8 in stage 0.0 (TID 4147) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1495] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 585.9 in stage 0.0 (TID 4552, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 585, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 292.11 in stage 0.0 (TID 4553, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 680.10 in stage 0.0 (TID 4248) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1496] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 331.12 in stage 0.0 (TID 4236) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1497] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 331.13 in stage 0.0 (TID 4554, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 680.11 in stage 0.0 (TID 4555, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 175.11 in stage 0.0 (TID 4211) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1498] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 833.5 in stage 0.0 (TID 4045) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1499] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 833.6 in stage 0.0 (TID 4556, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 833, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 761.8 in stage 0.0 (TID 4092) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1500] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 761.9 in stage 0.0 (TID 4557, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 761, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 822.5 in stage 0.0 (TID 4228) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1501] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 822.6 in stage 0.0 (TID 4558, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 822, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 609.10 in stage 0.0 (TID 4198) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1502] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 609.11 in stage 0.0 (TID 4559, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 175.12 in stage 0.0 (TID 4560, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 697.8 in stage 0.0 (TID 4224) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1503] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 683.8 in stage 0.0 (TID 4217) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1504] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 683.9 in stage 0.0 (TID 4561, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 683, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 273.8 in stage 0.0 (TID 4074) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1505] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 273.9 in stage 0.0 (TID 4562, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 273, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 627.10 in stage 0.0 (TID 4254) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1506] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 627.11 in stage 0.0 (TID 4563, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 681.6 in stage 0.0 (TID 4111) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1507] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 681.7 in stage 0.0 (TID 4564, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 681, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 697.9 in stage 0.0 (TID 4565, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 697, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 628.9 in stage 0.0 (TID 4164) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1508] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 628.10 in stage 0.0 (TID 4566, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 154.17 in stage 0.0 (TID 4267) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1509] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 767.7 in stage 0.0 (TID 4070) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1510] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 767.8 in stage 0.0 (TID 4567, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 767, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 299.8 in stage 0.0 (TID 4162) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1511] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 299.9 in stage 0.0 (TID 4568, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 299, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 124.9 in stage 0.0 (TID 4143) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1512] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 124.10 in stage 0.0 (TID 4569, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 206.13 in stage 0.0 (TID 4261) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1513] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 206.14 in stage 0.0 (TID 4570, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 422.9 in stage 0.0 (TID 4007) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1514] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 422.10 in stage 0.0 (TID 4571, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 355.13 in stage 0.0 (TID 4259) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1515] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 355.14 in stage 0.0 (TID 4572, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 791.8 in stage 0.0 (TID 4233) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1516] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 791.9 in stage 0.0 (TID 4573, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 791, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 409.12 in stage 0.0 (TID 4218) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1517] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 409.13 in stage 0.0 (TID 4574, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 276.10 in stage 0.0 (TID 4104) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1518] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 276.11 in stage 0.0 (TID 4575, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 202.12 in stage 0.0 (TID 4110) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1519] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 202.13 in stage 0.0 (TID 4576, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 154.18 in stage 0.0 (TID 4577, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 709.9 in stage 0.0 (TID 4231) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1520] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 620.7 in stage 0.0 (TID 4136) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1521] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 620.8 in stage 0.0 (TID 4578, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 620, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 896.4 in stage 0.0 (TID 4152) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1522] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 896.5 in stage 0.0 (TID 4579, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 896, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 612.8 in stage 0.0 (TID 4230) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1523] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 612.9 in stage 0.0 (TID 4580, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 612, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 759.8 in stage 0.0 (TID 4195) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1524] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 759.9 in stage 0.0 (TID 4581, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 759, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 842.6 in stage 0.0 (TID 4184) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1525] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 842.7 in stage 0.0 (TID 4582, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 842, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 354.10 in stage 0.0 (TID 4205) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1526] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 354.11 in stage 0.0 (TID 4583, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 829.8 in stage 0.0 (TID 4182) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1527] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 829.9 in stage 0.0 (TID 4584, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 829, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 141.8 in stage 0.0 (TID 4002) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1528] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 141.9 in stage 0.0 (TID 4585, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 141, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 401.9 in stage 0.0 (TID 4160) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1529] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 401.10 in stage 0.0 (TID 4586, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 506.11 in stage 0.0 (TID 4274) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1530] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 506.12 in stage 0.0 (TID 4587, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 838.7 in stage 0.0 (TID 4187) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1531] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 838.8 in stage 0.0 (TID 4588, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 838, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 604.8 in stage 0.0 (TID 4134) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1532] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 604.9 in stage 0.0 (TID 4589, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 604, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 808.6 in stage 0.0 (TID 4026) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1533] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 808.7 in stage 0.0 (TID 4590, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 808, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 52.15 in stage 0.0 (TID 4008) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1534] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 52.16 in stage 0.0 (TID 4591, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 521.8 in stage 0.0 (TID 4199) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1535] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 521.9 in stage 0.0 (TID 4592, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 521, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 728.10 in stage 0.0 (TID 4281) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1536] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 728.11 in stage 0.0 (TID 4593, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 186.11 in stage 0.0 (TID 4246) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1537] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 186.12 in stage 0.0 (TID 4594, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 136.9 in stage 0.0 (TID 3719) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1538] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 136.10 in stage 0.0 (TID 4595, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 762.10 in stage 0.0 (TID 4302) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1539] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 762.11 in stage 0.0 (TID 4596, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 964.2 in stage 0.0 (TID 4310) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1540] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 964.3 in stage 0.0 (TID 4597, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 964, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 718.9 in stage 0.0 (TID 4089) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1541] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 718.10 in stage 0.0 (TID 4598, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 709.10 in stage 0.0 (TID 4599, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 476.10 in stage 0.0 (TID 4214) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1542] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 57.10 in stage 0.0 (TID 4242) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1543] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 57.11 in stage 0.0 (TID 4600, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 593.11 in stage 0.0 (TID 4263) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1544] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 593.12 in stage 0.0 (TID 4601, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 49.11 in stage 0.0 (TID 4178) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1545] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 49.12 in stage 0.0 (TID 4602, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 943.2 in stage 0.0 (TID 4207) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1546] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 943.3 in stage 0.0 (TID 4603, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 943, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 358.8 in stage 0.0 (TID 4115) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1547] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 358.9 in stage 0.0 (TID 4604, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 358, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 143.12 in stage 0.0 (TID 4223) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1548] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 143.13 in stage 0.0 (TID 4605, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 476.11 in stage 0.0 (TID 4606, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 475.12 in stage 0.0 (TID 4258) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1549] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 475.13 in stage 0.0 (TID 4607, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 719.10 in stage 0.0 (TID 4294) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1550] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 454.8 in stage 0.0 (TID 4141) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1551] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 454.9 in stage 0.0 (TID 4608, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 454, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 719.11 in stage 0.0 (TID 4609, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 366.10 in stage 0.0 (TID 4239) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1552] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 511.11 in stage 0.0 (TID 4295) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1553] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 511.12 in stage 0.0 (TID 4610, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 366.11 in stage 0.0 (TID 4611, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 121.12 in stage 0.0 (TID 4612, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 201.12 in stage 0.0 (TID 4202) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1554] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 209.11 in stage 0.0 (TID 4215) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1555] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 727.9 in stage 0.0 (TID 4213) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1556] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 727.10 in stage 0.0 (TID 4613, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 500.9 in stage 0.0 (TID 4219) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1557] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 500.10 in stage 0.0 (TID 4614, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 939.3 in stage 0.0 (TID 4301) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1558] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 939.4 in stage 0.0 (TID 4615, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 939, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 209.12 in stage 0.0 (TID 4616, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 201.13 in stage 0.0 (TID 4617, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 984.0 in stage 0.0 (TID 4618, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 984, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 444.12 in stage 0.0 (TID 4292) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1559] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 578.8 in stage 0.0 (TID 4189) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1560] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 492.10 in stage 0.0 (TID 4284) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1561] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 193.13 in stage 0.0 (TID 4326) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1562] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 193.14 in stage 0.0 (TID 4619, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 193, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 596.9 in stage 0.0 (TID 4188) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1563] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 596.10 in stage 0.0 (TID 4620, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 274.12 in stage 0.0 (TID 4349) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1564] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 274.13 in stage 0.0 (TID 4621, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 188.12 in stage 0.0 (TID 4249) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1565] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 188.13 in stage 0.0 (TID 4622, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 426.13 in stage 0.0 (TID 4157) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1566] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 426.14 in stage 0.0 (TID 4623, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 47.13 in stage 0.0 (TID 4203) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1567] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 47.14 in stage 0.0 (TID 4624, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 492.11 in stage 0.0 (TID 4625, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 948.2 in stage 0.0 (TID 4216) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1568] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 173.9 in stage 0.0 (TID 4181) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1569] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 173.10 in stage 0.0 (TID 4626, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 769.9 in stage 0.0 (TID 4306) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1570] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 769.10 in stage 0.0 (TID 4627, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 198.13 in stage 0.0 (TID 4268) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1571] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 198.14 in stage 0.0 (TID 4628, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 971.1 in stage 0.0 (TID 4262) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1572] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 971.2 in stage 0.0 (TID 4629, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 971, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 736.9 in stage 0.0 (TID 4314) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1573] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 736.10 in stage 0.0 (TID 4630, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 415.14 in stage 0.0 (TID 4338) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1574] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 415.15 in stage 0.0 (TID 4631, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 310.13 in stage 0.0 (TID 4317) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1575] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 310.14 in stage 0.0 (TID 4632, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 158.13 in stage 0.0 (TID 4345) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1576] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 158.14 in stage 0.0 (TID 4633, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 834.7 in stage 0.0 (TID 4256) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1577] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 834.8 in stage 0.0 (TID 4634, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 834, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 515.8 in stage 0.0 (TID 4243) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1578] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 515.9 in stage 0.0 (TID 4635, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 515, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 948.3 in stage 0.0 (TID 4636, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 948, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 704.8 in stage 0.0 (TID 4247) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1579] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 333.12 in stage 0.0 (TID 4286) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1580] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 333.13 in stage 0.0 (TID 4637, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 982.0 in stage 0.0 (TID 4320) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1581] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 982.1 in stage 0.0 (TID 4638, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 982, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 687.7 in stage 0.0 (TID 4272) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1582] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 687.8 in stage 0.0 (TID 4639, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 687, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 493.9 in stage 0.0 (TID 4159) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1583] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 493.10 in stage 0.0 (TID 4640, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 327.11 in stage 0.0 (TID 4329) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1584] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 327.12 in stage 0.0 (TID 4641, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Finished task 975.0 in stage 0.0 (TID 4084) in 2416 ms on jg1-w-65.c.maclab-ukbb.internal (executor 7) (588/30000) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 704.9 in stage 0.0 (TID 4642, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 704, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 478.10 in stage 0.0 (TID 4043) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1585] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 478.11 in stage 0.0 (TID 4643, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 854.5 in stage 0.0 (TID 4287) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1586] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 854.6 in stage 0.0 (TID 4644, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 854, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 923.2 in stage 0.0 (TID 4206) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1587] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 923.3 in stage 0.0 (TID 4645, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 923, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 151.13 in stage 0.0 (TID 4328) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1588] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 151.14 in stage 0.0 (TID 4646, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 516.9 in stage 0.0 (TID 4264) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1589] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 516.10 in stage 0.0 (TID 4647, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 582.7 in stage 0.0 (TID 3837) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1590] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 582.8 in stage 0.0 (TID 4648, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 582, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 598.11 in stage 0.0 (TID 4364) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1591] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 598.12 in stage 0.0 (TID 4649, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 712.5 in stage 0.0 (TID 4158) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1592] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 712.6 in stage 0.0 (TID 4650, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 712, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 780.9 in stage 0.0 (TID 4293) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1593] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 780.10 in stage 0.0 (TID 4651, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 861.7 in stage 0.0 (TID 4365) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1594] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 861.8 in stage 0.0 (TID 4652, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 861, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 568.10 in stage 0.0 (TID 4356) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1595] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 568.11 in stage 0.0 (TID 4653, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 852.7 in stage 0.0 (TID 4278) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1596] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 852.8 in stage 0.0 (TID 4654, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 852, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 679.8 in stage 0.0 (TID 4275) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1597] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 679.9 in stage 0.0 (TID 4655, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 679, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 878.7 in stage 0.0 (TID 4318) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1598] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 878.8 in stage 0.0 (TID 4656, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 878, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 578.9 in stage 0.0 (TID 4657, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 578, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 63.14 in stage 0.0 (TID 4343) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1599] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 820.6 in stage 0.0 (TID 4270) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1600] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 820.7 in stage 0.0 (TID 4658, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 820, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 442.11 in stage 0.0 (TID 4352) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1601] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 442.12 in stage 0.0 (TID 4659, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 863.5 in stage 0.0 (TID 4015) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1602] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 863.6 in stage 0.0 (TID 4660, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 863, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 903.6 in stage 0.0 (TID 4312) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1603] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 903.7 in stage 0.0 (TID 4661, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 903, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 392.12 in stage 0.0 (TID 4341) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1604] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 392.13 in stage 0.0 (TID 4662, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 199.13 in stage 0.0 (TID 4325) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1605] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 199.14 in stage 0.0 (TID 4663, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 855.7 in stage 0.0 (TID 4340) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1606] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 855.8 in stage 0.0 (TID 4664, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 855, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 185.12 in stage 0.0 (TID 4240) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1607] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 185.13 in stage 0.0 (TID 4665, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Finished task 974.0 in stage 0.0 (TID 4025) in 2735 ms on jg1-w-19.c.maclab-ukbb.internal (executor 101) (589/30000) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 63.15 in stage 0.0 (TID 4666, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 505.11 in stage 0.0 (TID 4323) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1608] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 505.12 in stage 0.0 (TID 4667, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 505, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 784.5 in stage 0.0 (TID 4245) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1609] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 784.6 in stage 0.0 (TID 4668, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 784, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 444.13 in stage 0.0 (TID 4669, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 591.8 in stage 0.0 (TID 4253) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1610] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 591.9 in stage 0.0 (TID 4670, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 591, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 765.8 in stage 0.0 (TID 4342) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1611] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 288.11 in stage 0.0 (TID 4290) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1612] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 288.12 in stage 0.0 (TID 4671, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 608.10 in stage 0.0 (TID 4379) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1613] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 608.11 in stage 0.0 (TID 4672, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 607.7 in stage 0.0 (TID 4232) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1614] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 607.8 in stage 0.0 (TID 4673, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 607, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 765.9 in stage 0.0 (TID 4674, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 765, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 768.7 in stage 0.0 (TID 4251) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1615] 2020-04-02 15:10:57 TaskSetManager: INFO: Finished task 977.0 in stage 0.0 (TID 4131) in 2384 ms on jg1-w-12.c.maclab-ukbb.internal (executor 32) (590/30000) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 768.8 in stage 0.0 (TID 4675, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 768, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 165.11 in stage 0.0 (TID 4289) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1616] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 165.12 in stage 0.0 (TID 4676, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 544.12 in stage 0.0 (TID 4435) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1617] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 544.13 in stage 0.0 (TID 4677, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 985.0 in stage 0.0 (TID 4678, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 985, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 764.8 in stage 0.0 (TID 4307) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1618] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 777.9 in stage 0.0 (TID 4363) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1619] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 777.10 in stage 0.0 (TID 4679, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 372.9 in stage 0.0 (TID 4346) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1620] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 372.10 in stage 0.0 (TID 4680, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 166.12 in stage 0.0 (TID 4330) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1621] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 166.13 in stage 0.0 (TID 4681, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 443.13 in stage 0.0 (TID 4385) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1622] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 443.14 in stage 0.0 (TID 4682, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 400.11 in stage 0.0 (TID 4386) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1623] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 400.12 in stage 0.0 (TID 4683, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 428.11 in stage 0.0 (TID 4375) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1624] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 428.12 in stage 0.0 (TID 4684, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 764.9 in stage 0.0 (TID 4685, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 764, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 849.7 in stage 0.0 (TID 4394) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1625] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 160.10 in stage 0.0 (TID 4276) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1626] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 160.11 in stage 0.0 (TID 4686, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 160, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 170.13 in stage 0.0 (TID 4400) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1627] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 170.14 in stage 0.0 (TID 4687, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 644.10 in stage 0.0 (TID 4367) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1628] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 644.11 in stage 0.0 (TID 4688, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 644, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Finished task 980.0 in stage 0.0 (TID 4227) in 2030 ms on jg1-w-97.c.maclab-ukbb.internal (executor 126) (591/30000) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 849.8 in stage 0.0 (TID 4689, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 849, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 346.11 in stage 0.0 (TID 4396) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1629] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 346.12 in stage 0.0 (TID 4690, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 75.14 in stage 0.0 (TID 4450) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1630] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 75.15 in stage 0.0 (TID 4691, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 155.9 in stage 0.0 (TID 4222) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1631] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 155.10 in stage 0.0 (TID 4692, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 155, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 810.6 in stage 0.0 (TID 4297) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1632] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 810.7 in stage 0.0 (TID 4693, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 810, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 799.8 in stage 0.0 (TID 4359) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1633] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 799.9 in stage 0.0 (TID 4694, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 799, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 257.13 in stage 0.0 (TID 4411) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1634] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 257.14 in stage 0.0 (TID 4695, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 257, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Finished task 978.0 in stage 0.0 (TID 4144) in 2419 ms on jg1-w-4.c.maclab-ukbb.internal (executor 146) (592/30000) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 986.0 in stage 0.0 (TID 4696, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 986, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 987.0 in stage 0.0 (TID 4697, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 987, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 177.11 in stage 0.0 (TID 4374) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1635] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 847.8 in stage 0.0 (TID 4387) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1636] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 847.9 in stage 0.0 (TID 4698, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 847, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 177.12 in stage 0.0 (TID 4699, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 142.13 in stage 0.0 (TID 4371) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1637] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 3.12 in stage 0.0 (TID 4269) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1638] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 3.13 in stage 0.0 (TID 4700, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 3, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 488.9 in stage 0.0 (TID 4303) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1639] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 488.10 in stage 0.0 (TID 4701, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 513.12 in stage 0.0 (TID 4462) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1640] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 513.13 in stage 0.0 (TID 4702, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 507.9 in stage 0.0 (TID 4279) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1641] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 507.10 in stage 0.0 (TID 4703, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 846.8 in stage 0.0 (TID 4280) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1642] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 846.9 in stage 0.0 (TID 4704, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 846, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 142.14 in stage 0.0 (TID 4705, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 398.8 in stage 0.0 (TID 4174) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1643] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 721.10 in stage 0.0 (TID 4421) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1644] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 721.11 in stage 0.0 (TID 4706, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 721, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 281.12 in stage 0.0 (TID 4376) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1645] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 281.13 in stage 0.0 (TID 4707, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 398.9 in stage 0.0 (TID 4708, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 398, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 51.11 in stage 0.0 (TID 4336) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1646] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 224.10 in stage 0.0 (TID 4308) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1647] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 224.11 in stage 0.0 (TID 4709, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 51.12 in stage 0.0 (TID 4710, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 303.12 in stage 0.0 (TID 4321) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1648] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 955.3 in stage 0.0 (TID 4423) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1649] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 955.4 in stage 0.0 (TID 4711, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 955, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 434.7 in stage 0.0 (TID 4226) on jg1-w-66.c.maclab-ukbb.internal, executor 159: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1650] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 434.8 in stage 0.0 (TID 4712, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 434, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 303.13 in stage 0.0 (TID 4713, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 828.8 in stage 0.0 (TID 4441) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1651] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 405.8 in stage 0.0 (TID 4201) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1652] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 405.9 in stage 0.0 (TID 4714, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 405, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 91.14 in stage 0.0 (TID 4417) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1653] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 91.15 in stage 0.0 (TID 4715, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 897.4 in stage 0.0 (TID 4316) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1654] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 897.5 in stage 0.0 (TID 4716, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 897, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 828.9 in stage 0.0 (TID 4717, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 828, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 702.7 in stage 0.0 (TID 4255) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1655] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 742.10 in stage 0.0 (TID 4427) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1656] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 742.11 in stage 0.0 (TID 4718, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 742, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 702.8 in stage 0.0 (TID 4719, jg1-w-21.c.maclab-ukbb.internal, executor 27, partition 702, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 391.7 in stage 0.0 (TID 4300) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1657] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 707.10 in stage 0.0 (TID 4382) on jg1-w-21.c.maclab-ukbb.internal, executor 27: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1658] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 707.11 in stage 0.0 (TID 4720, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 391.8 in stage 0.0 (TID 4721, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 391, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 690.9 in stage 0.0 (TID 4322) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1659] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 690.10 in stage 0.0 (TID 4722, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 460.10 in stage 0.0 (TID 4334) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1660] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 460.11 in stage 0.0 (TID 4723, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 459.11 in stage 0.0 (TID 4362) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1661] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 140.11 in stage 0.0 (TID 4332) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1662] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 140.12 in stage 0.0 (TID 4724, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 140, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 427.11 in stage 0.0 (TID 4283) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1663] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 427.12 in stage 0.0 (TID 4725, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 541.8 in stage 0.0 (TID 4183) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1664] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 541.9 in stage 0.0 (TID 4726, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 541, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 703.8 in stage 0.0 (TID 4420) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1665] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 703.9 in stage 0.0 (TID 4727, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 703, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 916.4 in stage 0.0 (TID 4324) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1666] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 916.5 in stage 0.0 (TID 4728, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 916, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 459.12 in stage 0.0 (TID 4729, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 491.9 in stage 0.0 (TID 4225) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1667] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 756.9 in stage 0.0 (TID 4442) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1668] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 756.10 in stage 0.0 (TID 4730, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 839.6 in stage 0.0 (TID 4327) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1669] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 839.7 in stage 0.0 (TID 4731, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 839, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 973.1 in stage 0.0 (TID 4432) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1670] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 973.2 in stage 0.0 (TID 4732, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 973, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 758.9 in stage 0.0 (TID 4369) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1671] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 758.10 in stage 0.0 (TID 4733, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 758, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 848.8 in stage 0.0 (TID 4407) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1672] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 848.9 in stage 0.0 (TID 4734, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 848, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 491.10 in stage 0.0 (TID 4735, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 776.8 in stage 0.0 (TID 4304) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1673] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 113.14 in stage 0.0 (TID 4455) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1674] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 113.15 in stage 0.0 (TID 4736, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 572.8 in stage 0.0 (TID 4022) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1675] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 572.9 in stage 0.0 (TID 4737, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 572, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 477.6 in stage 0.0 (TID 4333) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1676] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 477.7 in stage 0.0 (TID 4738, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 477, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 187.14 in stage 0.0 (TID 4431) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1677] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 187.15 in stage 0.0 (TID 4739, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 776.9 in stage 0.0 (TID 4740, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 776, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 988.0 in stage 0.0 (TID 4741, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 988, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 794.9 in stage 0.0 (TID 4384) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1678] 2020-04-02 15:10:57 TaskSetManager: INFO: Finished task 981.0 in stage 0.0 (TID 4234) in 2189 ms on jg1-w-6.c.maclab-ukbb.internal (executor 176) (593/30000) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 710.10 in stage 0.0 (TID 4399) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1679] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 710.11 in stage 0.0 (TID 4742, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 668.8 in stage 0.0 (TID 4397) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1680] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 668.9 in stage 0.0 (TID 4743, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 668, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 653.9 in stage 0.0 (TID 4391) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1681] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 653.10 in stage 0.0 (TID 4744, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 653, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Finished task 976.0 in stage 0.0 (TID 4100) in 2756 ms on jg1-w-99.c.maclab-ukbb.internal (executor 30) (594/30000) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 794.10 in stage 0.0 (TID 4745, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 794, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 793.7 in stage 0.0 (TID 4291) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1682] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 793.8 in stage 0.0 (TID 4746, jg1-w-37.c.maclab-ukbb.internal, executor 9, partition 793, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 946.2 in stage 0.0 (TID 4212) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1683] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 946.3 in stage 0.0 (TID 4747, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 946, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 130.8 in stage 0.0 (TID 4351) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1684] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 130.9 in stage 0.0 (TID 4748, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 130, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 504.13 in stage 0.0 (TID 4446) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1685] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 504.14 in stage 0.0 (TID 4749, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 348.11 in stage 0.0 (TID 4452) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1686] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 348.12 in stage 0.0 (TID 4750, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 348, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 989.0 in stage 0.0 (TID 4751, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 989, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 673.10 in stage 0.0 (TID 4444) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1687] 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 368.7 in stage 0.0 (TID 4044) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1688] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 368.8 in stage 0.0 (TID 4752, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 368, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 730.9 in stage 0.0 (TID 4358) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1689] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 730.10 in stage 0.0 (TID 4753, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 730, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 334.12 in stage 0.0 (TID 4415) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1690] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 334.13 in stage 0.0 (TID 4754, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 20.14 in stage 0.0 (TID 4401) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1691] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 20.15 in stage 0.0 (TID 4755, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 487.13 in stage 0.0 (TID 4424) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1692] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 487.14 in stage 0.0 (TID 4756, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 539.8 in stage 0.0 (TID 4319) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1693] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 539.9 in stage 0.0 (TID 4757, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 539, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 614.9 in stage 0.0 (TID 4422) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1694] 2020-04-02 15:10:57 TaskSetManager: INFO: Starting task 614.10 in stage 0.0 (TID 4758, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:57 TaskSetManager: INFO: Lost task 856.8 in stage 0.0 (TID 4472) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1695] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 856.9 in stage 0.0 (TID 4759, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 856, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 605.7 in stage 0.0 (TID 4282) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1696] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 605.8 in stage 0.0 (TID 4760, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 605, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 673.11 in stage 0.0 (TID 4761, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 821.9 in stage 0.0 (TID 4419) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1697] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 167.14 in stage 0.0 (TID 4508) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1698] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 167.15 in stage 0.0 (TID 4762, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 360.10 in stage 0.0 (TID 4296) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1699] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 360.11 in stage 0.0 (TID 4763, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 821.10 in stage 0.0 (TID 4764, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 496.11 in stage 0.0 (TID 4360) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1700] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 496.12 in stage 0.0 (TID 4765, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 496, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 594.9 in stage 0.0 (TID 4347) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1701] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 657.8 in stage 0.0 (TID 4366) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1702] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 657.9 in stage 0.0 (TID 4766, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 657, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 594.10 in stage 0.0 (TID 4767, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 694.10 in stage 0.0 (TID 4451) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1703] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 850.5 in stage 0.0 (TID 4315) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1704] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 850.6 in stage 0.0 (TID 4768, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 850, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 115.9 in stage 0.0 (TID 3691) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1705] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 115.10 in stage 0.0 (TID 4769, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 115, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 441.12 in stage 0.0 (TID 4437) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1706] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 441.13 in stage 0.0 (TID 4770, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 954.2 in stage 0.0 (TID 4355) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1707] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 954.3 in stage 0.0 (TID 4771, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 954, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 502.11 in stage 0.0 (TID 4348) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1708] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 502.12 in stage 0.0 (TID 4772, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 502, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 694.11 in stage 0.0 (TID 4773, jg1-w-25.c.maclab-ukbb.internal, executor 23, partition 694, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 693.6 in stage 0.0 (TID 4288) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1709] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 125.10 in stage 0.0 (TID 4337) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1710] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 125.11 in stage 0.0 (TID 4774, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 125, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Finished task 979.0 in stage 0.0 (TID 4163) in 2678 ms on jg1-w-13.c.maclab-ukbb.internal (executor 88) (595/30000) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 693.7 in stage 0.0 (TID 4775, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 693, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 746.9 in stage 0.0 (TID 4439) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1711] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 746.10 in stage 0.0 (TID 4776, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 526.9 in stage 0.0 (TID 4190) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1712] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 526.10 in stage 0.0 (TID 4777, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 526, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 798.6 in stage 0.0 (TID 4344) on jg1-w-66.c.maclab-ukbb.internal, executor 159: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1713] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 798.7 in stage 0.0 (TID 4778, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 798, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 698.8 in stage 0.0 (TID 4388) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1714] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 698.9 in stage 0.0 (TID 4779, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 698, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 53.15 in stage 0.0 (TID 4298) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1715] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 53.16 in stage 0.0 (TID 4780, jg1-w-95.c.maclab-ukbb.internal, executor 118, partition 53, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 162.9 in stage 0.0 (TID 4273) on jg1-w-95.c.maclab-ukbb.internal, executor 118: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1716] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 162.10 in stage 0.0 (TID 4781, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 162, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 990.0 in stage 0.0 (TID 4782, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 990, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 54.9 in stage 0.0 (TID 4372) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1717] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 107.10 in stage 0.0 (TID 4404) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1718] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 107.11 in stage 0.0 (TID 4783, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 107, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 806.7 in stage 0.0 (TID 4309) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1719] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 806.8 in stage 0.0 (TID 4784, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 806, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 54.10 in stage 0.0 (TID 4785, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 54, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 840.8 in stage 0.0 (TID 4521) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1720] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 275.14 in stage 0.0 (TID 4476) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1721] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 275.15 in stage 0.0 (TID 4786, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 840.9 in stage 0.0 (TID 4787, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 840, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 862.6 in stage 0.0 (TID 4406) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1722] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 862.7 in stage 0.0 (TID 4788, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 862, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 31.12 in stage 0.0 (TID 4357) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1723] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 247.13 in stage 0.0 (TID 4526) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1724] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 247.14 in stage 0.0 (TID 4789, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 947.4 in stage 0.0 (TID 4515) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1725] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 947.5 in stage 0.0 (TID 4790, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 947, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 519.12 in stage 0.0 (TID 4496) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1726] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 519.13 in stage 0.0 (TID 4791, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 169.12 in stage 0.0 (TID 4478) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1727] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 169.13 in stage 0.0 (TID 4792, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 169, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 423.14 in stage 0.0 (TID 4493) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1728] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 423.15 in stage 0.0 (TID 4793, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 31.13 in stage 0.0 (TID 4794, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 31, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 991.0 in stage 0.0 (TID 4795, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 991, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 1.16 in stage 0.0 (TID 4413) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1729] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 270.9 in stage 0.0 (TID 4265) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1730] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 27.11 in stage 0.0 (TID 4132) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1731] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 27.12 in stage 0.0 (TID 4796, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 27, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 658.9 in stage 0.0 (TID 4461) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1732] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 658.10 in stage 0.0 (TID 4797, jg1-w-40.c.maclab-ukbb.internal, executor 41, partition 658, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 497.11 in stage 0.0 (TID 4412) on jg1-w-40.c.maclab-ukbb.internal, executor 41: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1733] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 497.12 in stage 0.0 (TID 4798, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 248.11 in stage 0.0 (TID 4403) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1734] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 248.12 in stage 0.0 (TID 4799, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 248, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 950.3 in stage 0.0 (TID 4395) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1735] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 950.4 in stage 0.0 (TID 4800, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 950, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 361.9 in stage 0.0 (TID 4381) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1736] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 361.10 in stage 0.0 (TID 4801, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 361, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 282.13 in stage 0.0 (TID 4488) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1737] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 282.14 in stage 0.0 (TID 4802, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 715.8 in stage 0.0 (TID 4408) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1738] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 715.9 in stage 0.0 (TID 4803, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 715, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 713.9 in stage 0.0 (TID 4398) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1739] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 713.10 in stage 0.0 (TID 4804, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 157.15 in stage 0.0 (TID 4498) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1740] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 157.16 in stage 0.0 (TID 4805, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 518.11 in stage 0.0 (TID 4447) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1741] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 518.12 in stage 0.0 (TID 4806, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 518, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 951.3 in stage 0.0 (TID 4453) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1742] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 951.4 in stage 0.0 (TID 4807, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 951, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 335.12 in stage 0.0 (TID 4484) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1743] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 335.13 in stage 0.0 (TID 4808, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 944.4 in stage 0.0 (TID 4438) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1744] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 944.5 in stage 0.0 (TID 4809, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 944, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 152.11 in stage 0.0 (TID 4486) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1745] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 152.12 in stage 0.0 (TID 4810, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 197.11 in stage 0.0 (TID 4378) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1746] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 197.12 in stage 0.0 (TID 4811, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 197, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 425.11 in stage 0.0 (TID 4468) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1747] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 425.12 in stage 0.0 (TID 4812, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 106.11 in stage 0.0 (TID 4383) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1748] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 106.12 in stage 0.0 (TID 4813, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 309.9 in stage 0.0 (TID 4354) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1749] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 309.10 in stage 0.0 (TID 4814, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 309, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 634.8 in stage 0.0 (TID 4331) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1750] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 634.9 in stage 0.0 (TID 4815, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 634, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 111.11 in stage 0.0 (TID 4429) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1751] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 111.12 in stage 0.0 (TID 4816, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 111, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 218.10 in stage 0.0 (TID 4390) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1752] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 218.11 in stage 0.0 (TID 4817, jg1-w-33.c.maclab-ukbb.internal, executor 107, partition 218, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 508.8 in stage 0.0 (TID 4389) on jg1-w-33.c.maclab-ukbb.internal, executor 107: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1753] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 508.9 in stage 0.0 (TID 4818, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 508, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 350.9 in stage 0.0 (TID 4434) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1754] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 350.10 in stage 0.0 (TID 4819, jg1-w-87.c.maclab-ukbb.internal, executor 53, partition 350, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 191.11 in stage 0.0 (TID 4418) on jg1-w-87.c.maclab-ukbb.internal, executor 53: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1755] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 191.12 in stage 0.0 (TID 4820, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 191, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 449.14 in stage 0.0 (TID 4392) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1756] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 449.15 in stage 0.0 (TID 4821, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 804.6 in stage 0.0 (TID 4313) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1757] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 804.7 in stage 0.0 (TID 4822, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 804, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 957.2 in stage 0.0 (TID 4410) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1758] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 957.3 in stage 0.0 (TID 4823, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 957, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Finished task 966.0 in stage 0.0 (TID 3610) in 5265 ms on jg1-w-12.c.maclab-ukbb.internal (executor 51) (596/30000) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 270.10 in stage 0.0 (TID 4824, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 270, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 1.17 in stage 0.0 (TID 4825, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 64.10 in stage 0.0 (TID 4271) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1759] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 58.15 in stage 0.0 (TID 4487) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1760] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 58.16 in stage 0.0 (TID 4826, jg1-w-49.c.maclab-ukbb.internal, executor 24, partition 58, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 64.11 in stage 0.0 (TID 4827, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 64, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 195.14 in stage 0.0 (TID 4377) on jg1-w-49.c.maclab-ukbb.internal, executor 24: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1761] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 817.8 in stage 0.0 (TID 4477) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1762] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 817.9 in stage 0.0 (TID 4828, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 817, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 195.15 in stage 0.0 (TID 4829, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 195, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 194.14 in stage 0.0 (TID 4517) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1763] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 0.18 in stage 0.0 (TID 4494) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1764] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 0.19 in stage 0.0 (TID 4830, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 0, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 625.10 in stage 0.0 (TID 4405) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1765] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 625.11 in stage 0.0 (TID 4831, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 625, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 156.14 in stage 0.0 (TID 4519) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1766] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 156.15 in stage 0.0 (TID 4832, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 81.13 in stage 0.0 (TID 4458) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1767] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 81.14 in stage 0.0 (TID 4833, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 486.11 in stage 0.0 (TID 4512) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1768] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 486.12 in stage 0.0 (TID 4834, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 699.10 in stage 0.0 (TID 4530) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1769] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 699.11 in stage 0.0 (TID 4835, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 408.15 in stage 0.0 (TID 4457) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1770] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 408.16 in stage 0.0 (TID 4836, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 246.11 in stage 0.0 (TID 4460) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1771] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 246.12 in stage 0.0 (TID 4837, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 246, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 711.8 in stage 0.0 (TID 4480) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1772] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 711.9 in stage 0.0 (TID 4838, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 711, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 597.10 in stage 0.0 (TID 4523) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1773] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 597.11 in stage 0.0 (TID 4839, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 597, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 359.10 in stage 0.0 (TID 4501) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1774] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 359.11 in stage 0.0 (TID 4840, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 196.11 in stage 0.0 (TID 4380) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1775] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 196.12 in stage 0.0 (TID 4841, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 196, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 660.9 in stage 0.0 (TID 4443) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1776] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 660.10 in stage 0.0 (TID 4842, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 660, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 220.14 in stage 0.0 (TID 4492) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1777] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 220.15 in stage 0.0 (TID 4843, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 39.13 in stage 0.0 (TID 4459) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1778] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 39.14 in stage 0.0 (TID 4844, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 39, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 347.12 in stage 0.0 (TID 4532) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1779] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 347.13 in stage 0.0 (TID 4845, jg1-w-66.c.maclab-ukbb.internal, executor 184, partition 347, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 399.16 in stage 0.0 (TID 4506) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1780] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 399.17 in stage 0.0 (TID 4846, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 399, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 918.6 in stage 0.0 (TID 4524) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1781] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 918.7 in stage 0.0 (TID 4847, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 918, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 194.15 in stage 0.0 (TID 4848, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 680.11 in stage 0.0 (TID 4555) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1782] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 631.8 in stage 0.0 (TID 4353) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1783] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 631.9 in stage 0.0 (TID 4849, jg1-w-1.c.maclab-ukbb.internal, executor 123, partition 631, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 292.11 in stage 0.0 (TID 4553) on jg1-w-1.c.maclab-ukbb.internal, executor 123: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1784] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 292.12 in stage 0.0 (TID 4850, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 280.10 in stage 0.0 (TID 4402) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1785] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 280.11 in stage 0.0 (TID 4851, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 280, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 680.12 in stage 0.0 (TID 4852, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 919.5 in stage 0.0 (TID 4551) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1786] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 789.9 in stage 0.0 (TID 4546) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1787] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 789.10 in stage 0.0 (TID 4853, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 495.11 in stage 0.0 (TID 4464) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1788] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 495.12 in stage 0.0 (TID 4854, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 495, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Finished task 983.0 in stage 0.0 (TID 4339) in 2178 ms on jg1-w-87.c.maclab-ukbb.internal (executor 86) (597/30000) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 919.6 in stage 0.0 (TID 4855, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 919, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 667.7 in stage 0.0 (TID 4430) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1789] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 667.8 in stage 0.0 (TID 4856, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 667, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 778.7 in stage 0.0 (TID 4252) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1790] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 778.8 in stage 0.0 (TID 4857, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 778, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 992.0 in stage 0.0 (TID 4858, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 992, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 972.1 in stage 0.0 (TID 4409) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1791] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 972.2 in stage 0.0 (TID 4859, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 972, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 775.7 in stage 0.0 (TID 4368) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1792] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 205.12 in stage 0.0 (TID 4361) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1793] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 205.13 in stage 0.0 (TID 4860, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 206.14 in stage 0.0 (TID 4570) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1794] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 206.15 in stage 0.0 (TID 4861, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 970.1 in stage 0.0 (TID 4416) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1795] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 970.2 in stage 0.0 (TID 4862, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 970, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 50.13 in stage 0.0 (TID 4547) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1796] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 50.14 in stage 0.0 (TID 4863, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 50, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 783.9 in stage 0.0 (TID 4535) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1797] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 783.10 in stage 0.0 (TID 4864, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 783, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 462.9 in stage 0.0 (TID 4445) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1798] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 462.10 in stage 0.0 (TID 4865, jg1-w-17.c.maclab-ukbb.internal, executor 166, partition 462, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 744.9 in stage 0.0 (TID 4285) on jg1-w-17.c.maclab-ukbb.internal, executor 166: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1799] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 744.10 in stage 0.0 (TID 4866, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 212.12 in stage 0.0 (TID 4502) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1800] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 212.13 in stage 0.0 (TID 4867, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 212, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 439.10 in stage 0.0 (TID 4456) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1801] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 439.11 in stage 0.0 (TID 4868, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 439, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 242.10 in stage 0.0 (TID 4428) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1802] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 242.11 in stage 0.0 (TID 4869, jg1-w-42.c.maclab-ukbb.internal, executor 167, partition 242, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 435.12 in stage 0.0 (TID 4473) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1803] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 435.13 in stage 0.0 (TID 4870, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 435, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 761.9 in stage 0.0 (TID 4557) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1804] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 761.10 in stage 0.0 (TID 4871, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 761, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 331.13 in stage 0.0 (TID 4554) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1805] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 331.14 in stage 0.0 (TID 4872, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 781.10 in stage 0.0 (TID 4511) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1806] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 781.11 in stage 0.0 (TID 4873, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 781, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 345.11 in stage 0.0 (TID 4277) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1807] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 345.12 in stage 0.0 (TID 4874, jg1-w-58.c.maclab-ukbb.internal, executor 170, partition 345, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 536.10 in stage 0.0 (TID 4550) on jg1-w-58.c.maclab-ukbb.internal, executor 170: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1808] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 536.11 in stage 0.0 (TID 4875, jg1-w-8.c.maclab-ukbb.internal, executor 180, partition 536, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 624.7 in stage 0.0 (TID 3935) on jg1-w-8.c.maclab-ukbb.internal, executor 180: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1809] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 624.8 in stage 0.0 (TID 4876, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 624, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 716.8 in stage 0.0 (TID 4481) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1810] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 716.9 in stage 0.0 (TID 4877, jg1-w-92.c.maclab-ukbb.internal, executor 171, partition 716, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 775.8 in stage 0.0 (TID 4878, jg1-w-55.c.maclab-ukbb.internal, executor 165, partition 775, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 627.11 in stage 0.0 (TID 4563) on jg1-w-92.c.maclab-ukbb.internal, executor 171: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1811] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 774.8 in stage 0.0 (TID 4299) on jg1-w-55.c.maclab-ukbb.internal, executor 165: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1812] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 774.9 in stage 0.0 (TID 4879, jg1-w-15.c.maclab-ukbb.internal, executor 127, partition 774, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 553.7 in stage 0.0 (TID 4507) on jg1-w-15.c.maclab-ukbb.internal, executor 127: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1813] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 553.8 in stage 0.0 (TID 4880, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 553, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 592.11 in stage 0.0 (TID 4540) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1814] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 592.12 in stage 0.0 (TID 4881, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 803.9 in stage 0.0 (TID 4536) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1815] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 803.10 in stage 0.0 (TID 4882, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 803, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 627.12 in stage 0.0 (TID 4883, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 627, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 796.7 in stage 0.0 (TID 4465) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1816] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 289.12 in stage 0.0 (TID 4544) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1817] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 289.13 in stage 0.0 (TID 4884, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 289, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 543.10 in stage 0.0 (TID 4479) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1818] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 543.11 in stage 0.0 (TID 4885, jg1-w-60.c.maclab-ukbb.internal, executor 15, partition 543, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 670.7 in stage 0.0 (TID 4482) on jg1-w-60.c.maclab-ukbb.internal, executor 15: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1819] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 670.8 in stage 0.0 (TID 4886, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 670, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 340.10 in stage 0.0 (TID 4448) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1820] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 340.11 in stage 0.0 (TID 4887, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 340, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 796.8 in stage 0.0 (TID 4888, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 796, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 326.9 in stage 0.0 (TID 4467) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1821] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 406.13 in stage 0.0 (TID 4510) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1822] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 406.14 in stage 0.0 (TID 4889, jg1-w-4.c.maclab-ukbb.internal, executor 173, partition 406, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 407.12 in stage 0.0 (TID 4469) on jg1-w-4.c.maclab-ukbb.internal, executor 173: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1823] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 407.13 in stage 0.0 (TID 4890, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 407, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 762.11 in stage 0.0 (TID 4596) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1824] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 762.12 in stage 0.0 (TID 4891, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 409.13 in stage 0.0 (TID 4574) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1825] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 409.14 in stage 0.0 (TID 4892, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 409, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 725.7 in stage 0.0 (TID 4440) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1826] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 725.8 in stage 0.0 (TID 4893, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 725, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 535.11 in stage 0.0 (TID 4528) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1827] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 535.12 in stage 0.0 (TID 4894, jg1-w-20.c.maclab-ukbb.internal, executor 6, partition 535, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 728.11 in stage 0.0 (TID 4593) on jg1-w-20.c.maclab-ukbb.internal, executor 6: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1828] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 728.12 in stage 0.0 (TID 4895, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 217.10 in stage 0.0 (TID 4311) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1829] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 217.11 in stage 0.0 (TID 4896, jg1-w-79.c.maclab-ukbb.internal, executor 26, partition 217, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 274.13 in stage 0.0 (TID 4621) on jg1-w-79.c.maclab-ukbb.internal, executor 26: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1830] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 274.14 in stage 0.0 (TID 4897, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 274, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 517.11 in stage 0.0 (TID 4499) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1831] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 517.12 in stage 0.0 (TID 4898, jg1-w-95.c.maclab-ukbb.internal, executor 74, partition 517, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 333.13 in stage 0.0 (TID 4637) on jg1-w-95.c.maclab-ukbb.internal, executor 74: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1832] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 333.14 in stage 0.0 (TID 4899, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 333, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 192.10 in stage 0.0 (TID 4370) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1833] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 192.11 in stage 0.0 (TID 4900, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 192, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 424.8 in stage 0.0 (TID 3927) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1834] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 424.9 in stage 0.0 (TID 4901, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 424, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 326.10 in stage 0.0 (TID 4902, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 326, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 414.12 in stage 0.0 (TID 4491) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1835] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 164.10 in stage 0.0 (TID 4475) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1836] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 164.11 in stage 0.0 (TID 4903, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 164, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 414.13 in stage 0.0 (TID 4904, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 414, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 609.11 in stage 0.0 (TID 4559) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1837] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 128.10 in stage 0.0 (TID 4525) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1838] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 128.11 in stage 0.0 (TID 4905, jg1-w-33.c.maclab-ukbb.internal, executor 140, partition 128, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 609.12 in stage 0.0 (TID 4906, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 609, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 153.12 in stage 0.0 (TID 4516) on jg1-w-33.c.maclab-ukbb.internal, executor 140: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1839] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 153.13 in stage 0.0 (TID 4907, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 153, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 154.18 in stage 0.0 (TID 4577) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1840] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 767.8 in stage 0.0 (TID 4567) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1841] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 767.9 in stage 0.0 (TID 4908, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 767, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 843.7 in stage 0.0 (TID 4495) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1842] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 843.8 in stage 0.0 (TID 4909, jg1-w-15.c.maclab-ukbb.internal, executor 83, partition 843, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 912.2 in stage 0.0 (TID 4490) on jg1-w-15.c.maclab-ukbb.internal, executor 83: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1843] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 912.3 in stage 0.0 (TID 4910, jg1-w-14.c.maclab-ukbb.internal, executor 186, partition 912, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 791.9 in stage 0.0 (TID 4573) on jg1-w-14.c.maclab-ukbb.internal, executor 186: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1844] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 791.10 in stage 0.0 (TID 4911, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 791, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 489.10 in stage 0.0 (TID 4463) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1845] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 489.11 in stage 0.0 (TID 4912, jg1-w-45.c.maclab-ukbb.internal, executor 68, partition 489, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 719.11 in stage 0.0 (TID 4609) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1846] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 719.12 in stage 0.0 (TID 4913, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 506.12 in stage 0.0 (TID 4587) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1847] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 506.13 in stage 0.0 (TID 4914, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 154.19 in stage 0.0 (TID 4915, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 154, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 593.12 in stage 0.0 (TID 4601) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1848] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 415.15 in stage 0.0 (TID 4631) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1849] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 415.16 in stage 0.0 (TID 4916, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 790.8 in stage 0.0 (TID 4373) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1850] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 790.9 in stage 0.0 (TID 4917, jg1-w-83.c.maclab-ukbb.internal, executor 85, partition 790, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 310.14 in stage 0.0 (TID 4632) on jg1-w-83.c.maclab-ukbb.internal, executor 85: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1851] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 310.15 in stage 0.0 (TID 4918, jg1-w-99.c.maclab-ukbb.internal, executor 30, partition 310, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 554.11 in stage 0.0 (TID 4548) on jg1-w-99.c.maclab-ukbb.internal, executor 30: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1852] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 554.12 in stage 0.0 (TID 4919, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 554, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 960.2 in stage 0.0 (TID 4470) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1853] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 960.3 in stage 0.0 (TID 4920, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 960, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 729.7 in stage 0.0 (TID 4466) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1854] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 729.8 in stage 0.0 (TID 4921, jg1-w-59.c.maclab-ukbb.internal, executor 190, partition 729, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 475.13 in stage 0.0 (TID 4607) on jg1-w-59.c.maclab-ukbb.internal, executor 190: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1855] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 475.14 in stage 0.0 (TID 4922, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 475, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 52.16 in stage 0.0 (TID 4591) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1856] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 52.17 in stage 0.0 (TID 4923, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 52, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 433.8 in stage 0.0 (TID 4350) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1857] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 433.9 in stage 0.0 (TID 4924, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 433, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 355.14 in stage 0.0 (TID 4572) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1858] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 355.15 in stage 0.0 (TID 4925, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 355, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 759.9 in stage 0.0 (TID 4581) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1859] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 759.10 in stage 0.0 (TID 4926, jg1-w-16.c.maclab-ukbb.internal, executor 34, partition 759, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 949.3 in stage 0.0 (TID 4504) on jg1-w-16.c.maclab-ukbb.internal, executor 34: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1860] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 949.4 in stage 0.0 (TID 4927, jg1-w-26.c.maclab-ukbb.internal, executor 21, partition 949, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 19.10 in stage 0.0 (TID 4489) on jg1-w-26.c.maclab-ukbb.internal, executor 21: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1861] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 19.11 in stage 0.0 (TID 4928, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 19, PROCESS_LOCAL, 8909 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 474.11 in stage 0.0 (TID 4513) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1862] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 474.12 in stage 0.0 (TID 4929, jg1-w-81.c.maclab-ukbb.internal, executor 111, partition 474, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 520.10 in stage 0.0 (TID 4537) on jg1-w-81.c.maclab-ukbb.internal, executor 111: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1863] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 520.11 in stage 0.0 (TID 4930, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 520, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 158.14 in stage 0.0 (TID 4633) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1864] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 158.15 in stage 0.0 (TID 4931, jg1-w-79.c.maclab-ukbb.internal, executor 45, partition 158, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 861.8 in stage 0.0 (TID 4652) on jg1-w-79.c.maclab-ukbb.internal, executor 45: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1865] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 861.9 in stage 0.0 (TID 4932, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 861, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 659.6 in stage 0.0 (TID 4497) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1866] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 659.7 in stage 0.0 (TID 4933, jg1-w-49.c.maclab-ukbb.internal, executor 43, partition 659, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 593.13 in stage 0.0 (TID 4934, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 593, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 718.10 in stage 0.0 (TID 4598) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1867] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 769.10 in stage 0.0 (TID 4627) on jg1-w-49.c.maclab-ukbb.internal, executor 43: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1868] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 769.11 in stage 0.0 (TID 4935, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 769, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 786.6 in stage 0.0 (TID 4542) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1869] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 786.7 in stage 0.0 (TID 4936, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 786, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 604.9 in stage 0.0 (TID 4589) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1870] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 604.10 in stage 0.0 (TID 4937, jg1-w-51.c.maclab-ukbb.internal, executor 31, partition 604, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 277.10 in stage 0.0 (TID 4023) on jg1-w-51.c.maclab-ukbb.internal, executor 31: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1871] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 277.11 in stage 0.0 (TID 4938, jg1-w-52.c.maclab-ukbb.internal, executor 106, partition 277, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 188.13 in stage 0.0 (TID 4622) on jg1-w-52.c.maclab-ukbb.internal, executor 106: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1872] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 188.14 in stage 0.0 (TID 4939, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 188, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 964.3 in stage 0.0 (TID 4597) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1873] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 964.4 in stage 0.0 (TID 4940, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 964, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 838.8 in stage 0.0 (TID 4588) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1874] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 838.9 in stage 0.0 (TID 4941, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 838, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 584.11 in stage 0.0 (TID 4514) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1875] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 584.12 in stage 0.0 (TID 4942, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 584, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 170.14 in stage 0.0 (TID 4687) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1876] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 170.15 in stage 0.0 (TID 4943, jg1-w-84.c.maclab-ukbb.internal, executor 75, partition 170, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 56.10 in stage 0.0 (TID 4474) on jg1-w-84.c.maclab-ukbb.internal, executor 75: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1877] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 56.11 in stage 0.0 (TID 4944, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 56, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 829.9 in stage 0.0 (TID 4584) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1878] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 829.10 in stage 0.0 (TID 4945, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 829, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 201.13 in stage 0.0 (TID 4617) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1879] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 201.14 in stage 0.0 (TID 4946, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 201, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 785.7 in stage 0.0 (TID 4527) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1880] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 785.8 in stage 0.0 (TID 4947, jg1-w-43.c.maclab-ukbb.internal, executor 150, partition 785, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 511.12 in stage 0.0 (TID 4610) on jg1-w-43.c.maclab-ukbb.internal, executor 150: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1881] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 511.13 in stage 0.0 (TID 4948, jg1-w-39.c.maclab-ukbb.internal, executor 137, partition 511, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 175.12 in stage 0.0 (TID 4560) on jg1-w-39.c.maclab-ukbb.internal, executor 137: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1882] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 175.13 in stage 0.0 (TID 4949, jg1-w-44.c.maclab-ukbb.internal, executor 105, partition 175, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 780.10 in stage 0.0 (TID 4651) on jg1-w-44.c.maclab-ukbb.internal, executor 105: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1883] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 780.11 in stage 0.0 (TID 4950, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 780, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 971.2 in stage 0.0 (TID 4629) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1884] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 971.3 in stage 0.0 (TID 4951, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 971, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 718.11 in stage 0.0 (TID 4952, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 718, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 681.7 in stage 0.0 (TID 4564) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1885] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 982.1 in stage 0.0 (TID 4638) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1886] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 982.2 in stage 0.0 (TID 4953, jg1-w-56.c.maclab-ukbb.internal, executor 17, partition 982, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 198.14 in stage 0.0 (TID 4628) on jg1-w-56.c.maclab-ukbb.internal, executor 17: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1887] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 198.15 in stage 0.0 (TID 4954, jg1-w-97.c.maclab-ukbb.internal, executor 126, partition 198, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 681.8 in stage 0.0 (TID 4955, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 681, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 596.10 in stage 0.0 (TID 4620) on jg1-w-97.c.maclab-ukbb.internal, executor 126: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1888] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 709.10 in stage 0.0 (TID 4599) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1889] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 709.11 in stage 0.0 (TID 4956, jg1-w-0.c.maclab-ukbb.internal, executor 112, partition 709, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 736.10 in stage 0.0 (TID 4630) on jg1-w-0.c.maclab-ukbb.internal, executor 112: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1890] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 736.11 in stage 0.0 (TID 4957, jg1-w-89.c.maclab-ukbb.internal, executor 116, partition 736, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 351.14 in stage 0.0 (TID 4541) on jg1-w-89.c.maclab-ukbb.internal, executor 116: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1891] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 351.15 in stage 0.0 (TID 4958, jg1-w-48.c.maclab-ukbb.internal, executor 67, partition 351, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 596.11 in stage 0.0 (TID 4959, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 596, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 903.7 in stage 0.0 (TID 4661) on jg1-w-48.c.maclab-ukbb.internal, executor 67: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1892] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 199.14 in stage 0.0 (TID 4663) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1893] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 199.15 in stage 0.0 (TID 4960, jg1-w-9.c.maclab-ukbb.internal, executor 77, partition 199, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 151.14 in stage 0.0 (TID 4646) on jg1-w-9.c.maclab-ukbb.internal, executor 77: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1894] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 151.15 in stage 0.0 (TID 4961, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 151, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 612.9 in stage 0.0 (TID 4580) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1895] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 612.10 in stage 0.0 (TID 4962, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 612, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 697.9 in stage 0.0 (TID 4565) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1896] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 697.10 in stage 0.0 (TID 4963, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 697, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 628.10 in stage 0.0 (TID 4566) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1897] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 628.11 in stage 0.0 (TID 4964, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 628, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 727.10 in stage 0.0 (TID 4613) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1898] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 727.11 in stage 0.0 (TID 4965, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 727, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 691.7 in stage 0.0 (TID 4425) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1899] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 691.8 in stage 0.0 (TID 4966, jg1-w-10.c.maclab-ukbb.internal, executor 185, partition 691, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 683.9 in stage 0.0 (TID 4561) on jg1-w-10.c.maclab-ukbb.internal, executor 185: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1900] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 683.10 in stage 0.0 (TID 4967, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 683, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 808.7 in stage 0.0 (TID 4590) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1901] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 808.8 in stage 0.0 (TID 4968, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 808, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 598.12 in stage 0.0 (TID 4649) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1902] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 598.13 in stage 0.0 (TID 4969, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 598, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 461.9 in stage 0.0 (TID 4545) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1903] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 461.10 in stage 0.0 (TID 4970, jg1-w-13.c.maclab-ukbb.internal, executor 88, partition 461, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 299.9 in stage 0.0 (TID 4568) on jg1-w-13.c.maclab-ukbb.internal, executor 88: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1904] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 299.10 in stage 0.0 (TID 4971, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 299, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 124.10 in stage 0.0 (TID 4569) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1905] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 124.11 in stage 0.0 (TID 4972, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 124, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 354.11 in stage 0.0 (TID 4583) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1906] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 354.12 in stage 0.0 (TID 4973, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 354, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 401.10 in stage 0.0 (TID 4586) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1907] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 401.11 in stage 0.0 (TID 4974, jg1-w-74.c.maclab-ukbb.internal, executor 168, partition 401, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 903.8 in stage 0.0 (TID 4975, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 903, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 444.13 in stage 0.0 (TID 4669) on jg1-w-74.c.maclab-ukbb.internal, executor 168: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1908] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 654.8 in stage 0.0 (TID 4335) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1909] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 654.9 in stage 0.0 (TID 4976, jg1-w-88.c.maclab-ukbb.internal, executor 178, partition 654, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 80.9 in stage 0.0 (TID 4533) on jg1-w-88.c.maclab-ukbb.internal, executor 178: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1910] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 80.10 in stage 0.0 (TID 4977, jg1-w-94.c.maclab-ukbb.internal, executor 99, partition 80, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 438.9 in stage 0.0 (TID 4485) on jg1-w-94.c.maclab-ukbb.internal, executor 99: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1911] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 438.10 in stage 0.0 (TID 4978, jg1-w-17.c.maclab-ukbb.internal, executor 191, partition 438, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 822.6 in stage 0.0 (TID 4558) on jg1-w-17.c.maclab-ukbb.internal, executor 191: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1912] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 822.7 in stage 0.0 (TID 4979, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 822, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 601.10 in stage 0.0 (TID 4531) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1913] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 601.11 in stage 0.0 (TID 4980, jg1-w-24.c.maclab-ukbb.internal, executor 182, partition 601, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 444.14 in stage 0.0 (TID 4981, jg1-w-28.c.maclab-ukbb.internal, executor 69, partition 444, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 854.6 in stage 0.0 (TID 4644) on jg1-w-24.c.maclab-ukbb.internal, executor 182: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1914] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 290.8 in stage 0.0 (TID 4534) on jg1-w-28.c.maclab-ukbb.internal, executor 69: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1915] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 290.9 in stage 0.0 (TID 4982, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 290, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 209.12 in stage 0.0 (TID 4616) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1916] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 209.13 in stage 0.0 (TID 4983, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 209, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 567.9 in stage 0.0 (TID 4509) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1917] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 567.10 in stage 0.0 (TID 4984, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 567, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 62.10 in stage 0.0 (TID 4500) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1918] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 62.11 in stage 0.0 (TID 4985, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 62, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 142.14 in stage 0.0 (TID 4705) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1919] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 142.15 in stage 0.0 (TID 4986, jg1-w-82.c.maclab-ukbb.internal, executor 108, partition 142, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 492.11 in stage 0.0 (TID 4625) on jg1-w-82.c.maclab-ukbb.internal, executor 108: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1920] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 492.12 in stage 0.0 (TID 4987, jg1-w-64.c.maclab-ukbb.internal, executor 70, partition 492, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 366.11 in stage 0.0 (TID 4611) on jg1-w-64.c.maclab-ukbb.internal, executor 70: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1921] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 366.12 in stage 0.0 (TID 4988, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 366, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 854.7 in stage 0.0 (TID 4989, jg1-w-92.c.maclab-ukbb.internal, executor 196, partition 854, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 392.13 in stage 0.0 (TID 4662) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1922] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 454.9 in stage 0.0 (TID 4608) on jg1-w-92.c.maclab-ukbb.internal, executor 196: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1923] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 454.10 in stage 0.0 (TID 4990, jg1-w-89.c.maclab-ukbb.internal, executor 71, partition 454, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 392.14 in stage 0.0 (TID 4991, jg1-w-91.c.maclab-ukbb.internal, executor 91, partition 392, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 849.8 in stage 0.0 (TID 4689) on jg1-w-89.c.maclab-ukbb.internal, executor 71: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1924] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 849.9 in stage 0.0 (TID 4992, jg1-w-42.c.maclab-ukbb.internal, executor 192, partition 849, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 443.14 in stage 0.0 (TID 4682) on jg1-w-91.c.maclab-ukbb.internal, executor 91: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1925] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 514.8 in stage 0.0 (TID 4529) on jg1-w-42.c.maclab-ukbb.internal, executor 192: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1926] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 514.9 in stage 0.0 (TID 4993, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 514, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 878.8 in stage 0.0 (TID 4656) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1927] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 878.9 in stage 0.0 (TID 4994, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 878, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 476.11 in stage 0.0 (TID 4606) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1928] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 476.12 in stage 0.0 (TID 4995, jg1-w-47.c.maclab-ukbb.internal, executor 194, partition 476, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 443.15 in stage 0.0 (TID 4996, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 443, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 842.7 in stage 0.0 (TID 4582) on jg1-w-47.c.maclab-ukbb.internal, executor 194: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1929] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 493.10 in stage 0.0 (TID 4640) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1930] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 493.11 in stage 0.0 (TID 4997, jg1-w-19.c.maclab-ukbb.internal, executor 101, partition 493, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 185.13 in stage 0.0 (TID 4665) on jg1-w-19.c.maclab-ukbb.internal, executor 101: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1931] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 185.14 in stage 0.0 (TID 4998, jg1-w-46.c.maclab-ukbb.internal, executor 181, partition 185, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 202.13 in stage 0.0 (TID 4576) on jg1-w-46.c.maclab-ukbb.internal, executor 181: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1932] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 202.14 in stage 0.0 (TID 4999, jg1-w-31.c.maclab-ukbb.internal, executor 183, partition 202, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 121.12 in stage 0.0 (TID 4612) on jg1-w-31.c.maclab-ukbb.internal, executor 183: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1933] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 121.13 in stage 0.0 (TID 5000, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 121, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 842.8 in stage 0.0 (TID 5001, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 842, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 75.15 in stage 0.0 (TID 4691) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1934] 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 704.9 in stage 0.0 (TID 4642) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1935] 2020-04-02 15:10:58 TaskSetManager: INFO: Starting task 704.10 in stage 0.0 (TID 5002, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 704, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:58 TaskSetManager: INFO: Lost task 500.10 in stage 0.0 (TID 4614) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1936] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 500.11 in stage 0.0 (TID 5003, jg1-w-24.c.maclab-ukbb.internal, executor 157, partition 500, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 91.15 in stage 0.0 (TID 4715) on jg1-w-24.c.maclab-ukbb.internal, executor 157: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1937] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 91.16 in stage 0.0 (TID 5004, jg1-w-90.c.maclab-ukbb.internal, executor 44, partition 91, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 426.14 in stage 0.0 (TID 4623) on jg1-w-90.c.maclab-ukbb.internal, executor 44: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1938] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 426.15 in stage 0.0 (TID 5005, jg1-w-38.c.maclab-ukbb.internal, executor 28, partition 426, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 542.7 in stage 0.0 (TID 4483) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1939] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 542.8 in stage 0.0 (TID 5006, jg1-w-85.c.maclab-ukbb.internal, executor 93, partition 542, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 225.12 in stage 0.0 (TID 4393) on jg1-w-85.c.maclab-ukbb.internal, executor 93: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1940] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 225.13 in stage 0.0 (TID 5007, jg1-w-96.c.maclab-ukbb.internal, executor 98, partition 225, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 227.9 in stage 0.0 (TID 4520) on jg1-w-96.c.maclab-ukbb.internal, executor 98: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1941] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 227.10 in stage 0.0 (TID 5008, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 227, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 136.10 in stage 0.0 (TID 4595) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1942] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 136.11 in stage 0.0 (TID 5009, jg1-w-32.c.maclab-ukbb.internal, executor 90, partition 136, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 187.15 in stage 0.0 (TID 4739) on jg1-w-32.c.maclab-ukbb.internal, executor 90: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1943] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 187.16 in stage 0.0 (TID 5010, jg1-w-90.c.maclab-ukbb.internal, executor 25, partition 187, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 943.3 in stage 0.0 (TID 4603) on jg1-w-90.c.maclab-ukbb.internal, executor 25: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1944] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 943.4 in stage 0.0 (TID 5011, jg1-w-83.c.maclab-ukbb.internal, executor 145, partition 943, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 585.9 in stage 0.0 (TID 4552) on jg1-w-83.c.maclab-ukbb.internal, executor 145: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1945] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 585.10 in stage 0.0 (TID 5012, jg1-w-72.c.maclab-ukbb.internal, executor 154, partition 585, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 847.9 in stage 0.0 (TID 4698) on jg1-w-72.c.maclab-ukbb.internal, executor 154: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1946] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 847.10 in stage 0.0 (TID 5013, jg1-w-58.c.maclab-ukbb.internal, executor 195, partition 847, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 63.15 in stage 0.0 (TID 4666) on jg1-w-58.c.maclab-ukbb.internal, executor 195: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1947] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 63.16 in stage 0.0 (TID 5014, jg1-w-84.c.maclab-ukbb.internal, executor 122, partition 63, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 833.6 in stage 0.0 (TID 4556) on jg1-w-84.c.maclab-ukbb.internal, executor 122: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1948] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 833.7 in stage 0.0 (TID 5015, jg1-w-78.c.maclab-ukbb.internal, executor 5, partition 833, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 75.16 in stage 0.0 (TID 5016, jg1-w-43.c.maclab-ukbb.internal, executor 129, partition 75, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 47.14 in stage 0.0 (TID 4624) on jg1-w-78.c.maclab-ukbb.internal, executor 5: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1949] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 47.15 in stage 0.0 (TID 5017, jg1-w-28.c.maclab-ukbb.internal, executor 39, partition 47, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 568.11 in stage 0.0 (TID 4653) on jg1-w-43.c.maclab-ukbb.internal, executor 129: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1950] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 41.10 in stage 0.0 (TID 4433) on jg1-w-28.c.maclab-ukbb.internal, executor 39: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1951] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 41.11 in stage 0.0 (TID 5018, jg1-w-22.c.maclab-ukbb.internal, executor 8, partition 41, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 568.12 in stage 0.0 (TID 5019, jg1-w-62.c.maclab-ukbb.internal, executor 60, partition 568, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 852.8 in stage 0.0 (TID 4654) on jg1-w-62.c.maclab-ukbb.internal, executor 60: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1952] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 478.11 in stage 0.0 (TID 4643) on jg1-w-22.c.maclab-ukbb.internal, executor 8: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1953] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 478.12 in stage 0.0 (TID 5020, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 478, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 939.4 in stage 0.0 (TID 4615) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1954] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 939.5 in stage 0.0 (TID 5021, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 939, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 852.9 in stage 0.0 (TID 5022, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 852, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 516.10 in stage 0.0 (TID 4647) on jg1-w-73.c.maclab-ukbb.internal, executor 130: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1955] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 143.13 in stage 0.0 (TID 4605) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1956] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 143.14 in stage 0.0 (TID 5023, jg1-w-61.c.maclab-ukbb.internal, executor 142, partition 143, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 690.10 in stage 0.0 (TID 4722) on jg1-w-61.c.maclab-ukbb.internal, executor 142: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1957] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 690.11 in stage 0.0 (TID 5024, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 690, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 846.9 in stage 0.0 (TID 4704) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1958] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 846.10 in stage 0.0 (TID 5025, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 846, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 855.8 in stage 0.0 (TID 4664) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1959] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 855.9 in stage 0.0 (TID 5026, jg1-w-54.c.maclab-ukbb.internal, executor 134, partition 855, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 880.6 in stage 0.0 (TID 4543) on jg1-w-54.c.maclab-ukbb.internal, executor 134: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1960] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 880.7 in stage 0.0 (TID 5027, jg1-w-56.c.maclab-ukbb.internal, executor 22, partition 880, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 591.9 in stage 0.0 (TID 4670) on jg1-w-56.c.maclab-ukbb.internal, executor 22: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1961] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 591.10 in stage 0.0 (TID 5028, jg1-w-93.c.maclab-ukbb.internal, executor 144, partition 591, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 516.11 in stage 0.0 (TID 5029, jg1-w-99.c.maclab-ukbb.internal, executor 49, partition 516, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 57.11 in stage 0.0 (TID 4600) on jg1-w-93.c.maclab-ukbb.internal, executor 144: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1962] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 276.11 in stage 0.0 (TID 4575) on jg1-w-99.c.maclab-ukbb.internal, executor 49: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1963] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 276.12 in stage 0.0 (TID 5030, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 276, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 327.12 in stage 0.0 (TID 4641) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1964] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 327.13 in stage 0.0 (TID 5031, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 327, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 57.12 in stage 0.0 (TID 5032, jg1-w-77.c.maclab-ukbb.internal, executor 147, partition 57, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 241.9 in stage 0.0 (TID 4503) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1965] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 487.14 in stage 0.0 (TID 4756) on jg1-w-77.c.maclab-ukbb.internal, executor 147: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1966] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 487.15 in stage 0.0 (TID 5033, jg1-w-39.c.maclab-ukbb.internal, executor 104, partition 487, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 863.6 in stage 0.0 (TID 4660) on jg1-w-39.c.maclab-ukbb.internal, executor 104: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1967] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 863.7 in stage 0.0 (TID 5034, jg1-w-75.c.maclab-ukbb.internal, executor 33, partition 863, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 428.12 in stage 0.0 (TID 4684) on jg1-w-75.c.maclab-ukbb.internal, executor 33: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1968] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 428.13 in stage 0.0 (TID 5035, jg1-w-96.c.maclab-ukbb.internal, executor 132, partition 428, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 620.8 in stage 0.0 (TID 4578) on jg1-w-96.c.maclab-ukbb.internal, executor 132: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1969] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 620.9 in stage 0.0 (TID 5036, jg1-w-7.c.maclab-ukbb.internal, executor 78, partition 620, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 828.9 in stage 0.0 (TID 4717) on jg1-w-7.c.maclab-ukbb.internal, executor 78: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1970] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 828.10 in stage 0.0 (TID 5037, jg1-w-12.c.maclab-ukbb.internal, executor 32, partition 828, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 241.10 in stage 0.0 (TID 5038, jg1-w-25.c.maclab-ukbb.internal, executor 42, partition 241, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 765.9 in stage 0.0 (TID 4674) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1971] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 422.10 in stage 0.0 (TID 4571) on jg1-w-25.c.maclab-ukbb.internal, executor 42: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1972] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 422.11 in stage 0.0 (TID 5039, jg1-w-61.c.maclab-ukbb.internal, executor 109, partition 422, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 765.10 in stage 0.0 (TID 5040, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 765, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 442.12 in stage 0.0 (TID 4659) on jg1-w-61.c.maclab-ukbb.internal, executor 109: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1973] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 544.13 in stage 0.0 (TID 4677) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1974] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 544.14 in stage 0.0 (TID 5041, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 544, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 853.4 in stage 0.0 (TID 4549) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1975] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 853.5 in stage 0.0 (TID 5042, jg1-w-48.c.maclab-ukbb.internal, executor 37, partition 853, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 703.9 in stage 0.0 (TID 4727) on jg1-w-48.c.maclab-ukbb.internal, executor 37: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1976] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 703.10 in stage 0.0 (TID 5043, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 703, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 848.9 in stage 0.0 (TID 4734) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1977] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 848.10 in stage 0.0 (TID 5044, jg1-w-53.c.maclab-ukbb.internal, executor 35, partition 848, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 973.2 in stage 0.0 (TID 4732) on jg1-w-53.c.maclab-ukbb.internal, executor 35: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1978] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 973.3 in stage 0.0 (TID 5045, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 973, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 165.12 in stage 0.0 (TID 4676) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1979] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 165.13 in stage 0.0 (TID 5046, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 165, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 281.13 in stage 0.0 (TID 4707) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1980] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 281.14 in stage 0.0 (TID 5047, jg1-w-3.c.maclab-ukbb.internal, executor 125, partition 281, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 821.10 in stage 0.0 (TID 4764) on jg1-w-3.c.maclab-ukbb.internal, executor 125: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1981] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 821.11 in stage 0.0 (TID 5048, jg1-w-72.c.maclab-ukbb.internal, executor 179, partition 821, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 513.13 in stage 0.0 (TID 4702) on jg1-w-72.c.maclab-ukbb.internal, executor 179: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1982] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 513.14 in stage 0.0 (TID 5049, jg1-w-36.c.maclab-ukbb.internal, executor 187, partition 513, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 799.9 in stage 0.0 (TID 4694) on jg1-w-36.c.maclab-ukbb.internal, executor 187: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1983] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 799.10 in stage 0.0 (TID 5050, jg1-w-53.c.maclab-ukbb.internal, executor 114, partition 799, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 51.12 in stage 0.0 (TID 4710) on jg1-w-53.c.maclab-ukbb.internal, executor 114: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1984] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 51.13 in stage 0.0 (TID 5051, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 51, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 346.12 in stage 0.0 (TID 4690) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1985] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 346.13 in stage 0.0 (TID 5052, jg1-w-46.c.maclab-ukbb.internal, executor 156, partition 346, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 756.10 in stage 0.0 (TID 4730) on jg1-w-46.c.maclab-ukbb.internal, executor 156: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1986] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 756.11 in stage 0.0 (TID 5053, jg1-w-69.c.maclab-ukbb.internal, executor 103, partition 756, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 177.12 in stage 0.0 (TID 4699) on jg1-w-69.c.maclab-ukbb.internal, executor 103: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1987] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 177.13 in stage 0.0 (TID 5054, jg1-w-63.c.maclab-ukbb.internal, executor 87, partition 177, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 442.13 in stage 0.0 (TID 5055, jg1-w-94.c.maclab-ukbb.internal, executor 131, partition 442, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 167.15 in stage 0.0 (TID 4762) on jg1-w-63.c.maclab-ukbb.internal, executor 87: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1988] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 572.9 in stage 0.0 (TID 4737) on jg1-w-94.c.maclab-ukbb.internal, executor 131: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1989] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 572.10 in stage 0.0 (TID 5056, jg1-w-9.c.maclab-ukbb.internal, executor 121, partition 572, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 504.14 in stage 0.0 (TID 4749) on jg1-w-9.c.maclab-ukbb.internal, executor 121: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1990] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 504.15 in stage 0.0 (TID 5057, jg1-w-50.c.maclab-ukbb.internal, executor 14, partition 504, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 820.7 in stage 0.0 (TID 4658) on jg1-w-50.c.maclab-ukbb.internal, executor 14: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1991] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 820.8 in stage 0.0 (TID 5058, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 820, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 521.9 in stage 0.0 (TID 4592) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1992] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 521.10 in stage 0.0 (TID 5059, jg1-w-86.c.maclab-ukbb.internal, executor 96, partition 521, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 583.8 in stage 0.0 (TID 4454) on jg1-w-86.c.maclab-ukbb.internal, executor 96: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1993] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 583.9 in stage 0.0 (TID 5060, jg1-w-70.c.maclab-ukbb.internal, executor 102, partition 583, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 141.9 in stage 0.0 (TID 4585) on jg1-w-70.c.maclab-ukbb.internal, executor 102: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1994] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 141.10 in stage 0.0 (TID 5061, jg1-w-16.c.maclab-ukbb.internal, executor 115, partition 141, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 784.6 in stage 0.0 (TID 4668) on jg1-w-16.c.maclab-ukbb.internal, executor 115: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1995] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 784.7 in stage 0.0 (TID 5062, jg1-w-34.c.maclab-ukbb.internal, executor 163, partition 784, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 157.16 in stage 0.0 (TID 4805) on jg1-w-34.c.maclab-ukbb.internal, executor 163: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1996] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 157.17 in stage 0.0 (TID 5063, jg1-w-67.c.maclab-ukbb.internal, executor 141, partition 157, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 488.10 in stage 0.0 (TID 4701) on jg1-w-67.c.maclab-ukbb.internal, executor 141: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1997] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 488.11 in stage 0.0 (TID 5064, jg1-w-44.c.maclab-ukbb.internal, executor 139, partition 488, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 20.15 in stage 0.0 (TID 4755) on jg1-w-44.c.maclab-ukbb.internal, executor 139: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1998] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 20.16 in stage 0.0 (TID 5065, jg1-w-60.c.maclab-ukbb.internal, executor 20, partition 20, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 519.13 in stage 0.0 (TID 4791) on jg1-w-60.c.maclab-ukbb.internal, executor 20: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 1999] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 519.14 in stage 0.0 (TID 5066, jg1-w-29.c.maclab-ukbb.internal, executor 58, partition 519, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 856.9 in stage 0.0 (TID 4759) on jg1-w-29.c.maclab-ukbb.internal, executor 58: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2000] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 856.10 in stage 0.0 (TID 5067, jg1-w-5.c.maclab-ukbb.internal, executor 76, partition 856, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 950.4 in stage 0.0 (TID 4800) on jg1-w-5.c.maclab-ukbb.internal, executor 76: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2001] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 950.5 in stage 0.0 (TID 5068, jg1-w-30.c.maclab-ukbb.internal, executor 124, partition 950, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 49.12 in stage 0.0 (TID 4602) on jg1-w-30.c.maclab-ukbb.internal, executor 124: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2002] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 49.13 in stage 0.0 (TID 5069, jg1-w-55.c.maclab-ukbb.internal, executor 189, partition 49, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 282.14 in stage 0.0 (TID 4802) on jg1-w-55.c.maclab-ukbb.internal, executor 189: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2003] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 282.15 in stage 0.0 (TID 5070, jg1-w-18.c.maclab-ukbb.internal, executor 197, partition 282, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 167.16 in stage 0.0 (TID 5071, jg1-w-82.c.maclab-ukbb.internal, executor 143, partition 167, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 944.5 in stage 0.0 (TID 4809) on jg1-w-18.c.maclab-ukbb.internal, executor 197: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2004] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 917.1 in stage 0.0 (TID 3134) on jg1-w-82.c.maclab-ukbb.internal, executor 143: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2005] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 917.2 in stage 0.0 (TID 5072, jg1-w-57.c.maclab-ukbb.internal, executor 151, partition 917, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 947.5 in stage 0.0 (TID 4790) on jg1-w-57.c.maclab-ukbb.internal, executor 151: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2006] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 947.6 in stage 0.0 (TID 5073, jg1-w-40.c.maclab-ukbb.internal, executor 72, partition 947, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 944.6 in stage 0.0 (TID 5074, jg1-w-54.c.maclab-ukbb.internal, executor 100, partition 944, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 460.11 in stage 0.0 (TID 4723) on jg1-w-40.c.maclab-ukbb.internal, executor 72: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2007] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 113.15 in stage 0.0 (TID 4736) on jg1-w-54.c.maclab-ukbb.internal, executor 100: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2008] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 113.16 in stage 0.0 (TID 5075, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 113, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 578.9 in stage 0.0 (TID 4657) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2009] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 578.10 in stage 0.0 (TID 5076, jg1-w-30.c.maclab-ukbb.internal, executor 81, partition 578, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 614.10 in stage 0.0 (TID 4758) on jg1-w-30.c.maclab-ukbb.internal, executor 81: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2010] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 614.11 in stage 0.0 (TID 5077, jg1-w-50.c.maclab-ukbb.internal, executor 19, partition 614, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 460.12 in stage 0.0 (TID 5078, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 460, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 166.13 in stage 0.0 (TID 4681) on jg1-w-50.c.maclab-ukbb.internal, executor 19: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2011] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 515.9 in stage 0.0 (TID 4635) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2012] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 515.10 in stage 0.0 (TID 5079, jg1-w-71.c.maclab-ukbb.internal, executor 56, partition 515, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 360.11 in stage 0.0 (TID 4763) on jg1-w-71.c.maclab-ukbb.internal, executor 56: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2013] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 360.12 in stage 0.0 (TID 5080, jg1-w-23.c.maclab-ukbb.internal, executor 46, partition 360, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 173.10 in stage 0.0 (TID 4626) on jg1-w-23.c.maclab-ukbb.internal, executor 46: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2014] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 173.11 in stage 0.0 (TID 5081, jg1-w-64.c.maclab-ukbb.internal, executor 40, partition 173, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 247.14 in stage 0.0 (TID 4789) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2015] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 247.15 in stage 0.0 (TID 5082, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 247, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 608.11 in stage 0.0 (TID 4672) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2016] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 608.12 in stage 0.0 (TID 5083, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 608, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 275.15 in stage 0.0 (TID 4786) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2017] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 275.16 in stage 0.0 (TID 5084, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 275, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 400.12 in stage 0.0 (TID 4683) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2018] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 400.13 in stage 0.0 (TID 5085, jg1-w-21.c.maclab-ukbb.internal, executor 47, partition 400, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 166.14 in stage 0.0 (TID 5086, jg1-w-70.c.maclab-ukbb.internal, executor 135, partition 166, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 449.15 in stage 0.0 (TID 4821) on jg1-w-21.c.maclab-ukbb.internal, executor 47: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2019] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 334.13 in stage 0.0 (TID 4754) on jg1-w-70.c.maclab-ukbb.internal, executor 135: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2020] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 334.14 in stage 0.0 (TID 5087, jg1-w-85.c.maclab-ukbb.internal, executor 63, partition 334, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 449.16 in stage 0.0 (TID 5088, jg1-w-14.c.maclab-ukbb.internal, executor 161, partition 449, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 582.8 in stage 0.0 (TID 4648) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2021] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 335.13 in stage 0.0 (TID 4808) on jg1-w-14.c.maclab-ukbb.internal, executor 161: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2022] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 335.14 in stage 0.0 (TID 5089, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 335, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 541.9 in stage 0.0 (TID 4726) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2023] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 541.10 in stage 0.0 (TID 5090, jg1-w-8.c.maclab-ukbb.internal, executor 155, partition 541, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 810.7 in stage 0.0 (TID 4693) on jg1-w-8.c.maclab-ukbb.internal, executor 155: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2024] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 810.8 in stage 0.0 (TID 5091, jg1-w-38.c.maclab-ukbb.internal, executor 48, partition 810, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 507.10 in stage 0.0 (TID 4703) on jg1-w-38.c.maclab-ukbb.internal, executor 48: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2025] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 507.11 in stage 0.0 (TID 5092, jg1-w-6.c.maclab-ukbb.internal, executor 153, partition 507, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 497.12 in stage 0.0 (TID 4798) on jg1-w-6.c.maclab-ukbb.internal, executor 153: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2026] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 497.13 in stage 0.0 (TID 5093, jg1-w-77.c.maclab-ukbb.internal, executor 128, partition 497, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 582.9 in stage 0.0 (TID 5094, jg1-w-87.c.maclab-ukbb.internal, executor 86, partition 582, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 303.13 in stage 0.0 (TID 4713) on jg1-w-77.c.maclab-ukbb.internal, executor 128: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2027] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 303.14 in stage 0.0 (TID 5095, jg1-w-63.c.maclab-ukbb.internal, executor 52, partition 303, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 713.10 in stage 0.0 (TID 4804) on jg1-w-87.c.maclab-ukbb.internal, executor 86: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2028] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 673.11 in stage 0.0 (TID 4761) on jg1-w-63.c.maclab-ukbb.internal, executor 52: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2029] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 673.12 in stage 0.0 (TID 5096, jg1-w-80.c.maclab-ukbb.internal, executor 18, partition 673, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 713.11 in stage 0.0 (TID 5097, jg1-w-32.c.maclab-ukbb.internal, executor 57, partition 713, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 680.12 in stage 0.0 (TID 4852) on jg1-w-32.c.maclab-ukbb.internal, executor 57: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2030] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 668.9 in stage 0.0 (TID 4743) on jg1-w-80.c.maclab-ukbb.internal, executor 18: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2031] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 668.10 in stage 0.0 (TID 5098, jg1-w-3.c.maclab-ukbb.internal, executor 84, partition 668, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 840.9 in stage 0.0 (TID 4787) on jg1-w-3.c.maclab-ukbb.internal, executor 84: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2032] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 840.10 in stage 0.0 (TID 5099, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 840, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 130.9 in stage 0.0 (TID 4748) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2033] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 130.10 in stage 0.0 (TID 5100, jg1-w-57.c.maclab-ukbb.internal, executor 177, partition 130, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 812.7 in stage 0.0 (TID 4522) on jg1-w-57.c.maclab-ukbb.internal, executor 177: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2034] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 812.8 in stage 0.0 (TID 5101, jg1-w-65.c.maclab-ukbb.internal, executor 7, partition 812, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 434.8 in stage 0.0 (TID 4712) on jg1-w-65.c.maclab-ukbb.internal, executor 7: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2035] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 434.9 in stage 0.0 (TID 5102, jg1-w-91.c.maclab-ukbb.internal, executor 59, partition 434, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 680.13 in stage 0.0 (TID 5103, jg1-w-47.c.maclab-ukbb.internal, executor 169, partition 680, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 459.12 in stage 0.0 (TID 4729) on jg1-w-91.c.maclab-ukbb.internal, executor 59: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2036] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 459.13 in stage 0.0 (TID 5104, jg1-w-18.c.maclab-ukbb.internal, executor 172, partition 459, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 273.9 in stage 0.0 (TID 4562) on jg1-w-47.c.maclab-ukbb.internal, executor 169: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2037] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 292.12 in stage 0.0 (TID 4850) on jg1-w-18.c.maclab-ukbb.internal, executor 172: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2038] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 292.13 in stage 0.0 (TID 5105, jg1-w-88.c.maclab-ukbb.internal, executor 152, partition 292, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 423.15 in stage 0.0 (TID 4793) on jg1-w-88.c.maclab-ukbb.internal, executor 152: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2039] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 423.16 in stage 0.0 (TID 5106, jg1-w-29.c.maclab-ukbb.internal, executor 1, partition 423, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 987.0 in stage 0.0 (TID 4697) on jg1-w-29.c.maclab-ukbb.internal, executor 1: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2040] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 987.1 in stage 0.0 (TID 5107, jg1-w-68.c.maclab-ukbb.internal, executor 64, partition 987, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 746.10 in stage 0.0 (TID 4776) on jg1-w-68.c.maclab-ukbb.internal, executor 64: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2041] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 746.11 in stage 0.0 (TID 5108, jg1-w-37.c.maclab-ukbb.internal, executor 12, partition 746, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 372.10 in stage 0.0 (TID 4680) on jg1-w-37.c.maclab-ukbb.internal, executor 12: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2042] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 372.11 in stage 0.0 (TID 5109, jg1-w-23.c.maclab-ukbb.internal, executor 29, partition 372, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 156.15 in stage 0.0 (TID 4832) on jg1-w-23.c.maclab-ukbb.internal, executor 29: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2043] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 156.16 in stage 0.0 (TID 5110, jg1-w-41.c.maclab-ukbb.internal, executor 174, partition 156, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 707.11 in stage 0.0 (TID 4720) on jg1-w-41.c.maclab-ukbb.internal, executor 174: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2044] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 707.12 in stage 0.0 (TID 5111, jg1-w-97.c.maclab-ukbb.internal, executor 82, partition 707, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 817.9 in stage 0.0 (TID 4828) on jg1-w-97.c.maclab-ukbb.internal, executor 82: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2045] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 817.10 in stage 0.0 (TID 5112, jg1-w-66.c.maclab-ukbb.internal, executor 159, partition 817, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 955.4 in stage 0.0 (TID 4711) on jg1-w-66.c.maclab-ukbb.internal, executor 159: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2046] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 955.5 in stage 0.0 (TID 5113, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 955, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 273.10 in stage 0.0 (TID 5114, jg1-w-68.c.maclab-ukbb.internal, executor 95, partition 273, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 441.13 in stage 0.0 (TID 4770) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2047] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 679.9 in stage 0.0 (TID 4655) on jg1-w-68.c.maclab-ukbb.internal, executor 95: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2048] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 679.10 in stage 0.0 (TID 5115, jg1-w-41.c.maclab-ukbb.internal, executor 148, partition 679, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 441.14 in stage 0.0 (TID 5116, jg1-w-98.c.maclab-ukbb.internal, executor 62, partition 441, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 224.11 in stage 0.0 (TID 4709) on jg1-w-41.c.maclab-ukbb.internal, executor 148: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2049] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 398.9 in stage 0.0 (TID 4708) on jg1-w-98.c.maclab-ukbb.internal, executor 62: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2050] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 398.10 in stage 0.0 (TID 5117, jg1-w-69.c.maclab-ukbb.internal, executor 136, partition 398, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 839.7 in stage 0.0 (TID 4731) on jg1-w-69.c.maclab-ukbb.internal, executor 136: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2051] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 839.8 in stage 0.0 (TID 5118, jg1-w-74.c.maclab-ukbb.internal, executor 193, partition 839, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 224.12 in stage 0.0 (TID 5119, jg1-w-11.c.maclab-ukbb.internal, executor 117, partition 224, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 152.12 in stage 0.0 (TID 4810) on jg1-w-11.c.maclab-ukbb.internal, executor 117: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2052] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 425.12 in stage 0.0 (TID 4812) on jg1-w-74.c.maclab-ukbb.internal, executor 193: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2053] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 425.13 in stage 0.0 (TID 5120, jg1-w-45.c.maclab-ukbb.internal, executor 38, partition 425, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 194.15 in stage 0.0 (TID 4848) on jg1-w-45.c.maclab-ukbb.internal, executor 38: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2054] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 194.16 in stage 0.0 (TID 5121, jg1-w-4.c.maclab-ukbb.internal, executor 146, partition 194, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 152.13 in stage 0.0 (TID 5122, jg1-w-20.c.maclab-ukbb.internal, executor 3, partition 152, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 768.8 in stage 0.0 (TID 4675) on jg1-w-4.c.maclab-ukbb.internal, executor 146: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2055] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 806.8 in stage 0.0 (TID 4784) on jg1-w-20.c.maclab-ukbb.internal, executor 3: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2056] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 806.9 in stage 0.0 (TID 5123, jg1-w-2.c.maclab-ukbb.internal, executor 79, partition 806, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 768.9 in stage 0.0 (TID 5124, jg1-w-73.c.maclab-ukbb.internal, executor 130, partition 768, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 486.12 in stage 0.0 (TID 4834) on jg1-w-2.c.maclab-ukbb.internal, executor 79: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2057] 2020-04-02 15:10:59 TaskSetManager: INFO: Finished task 984.0 in stage 0.0 (TID 4618) in 2261 ms on jg1-w-73.c.maclab-ukbb.internal (executor 130) (598/30000) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 486.13 in stage 0.0 (TID 5125, jg1-w-62.c.maclab-ukbb.internal, executor 2, partition 486, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 710.11 in stage 0.0 (TID 4742) on jg1-w-62.c.maclab-ukbb.internal, executor 2: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2058] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 710.12 in stage 0.0 (TID 5126, jg1-w-11.c.maclab-ukbb.internal, executor 73, partition 710, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 427.12 in stage 0.0 (TID 4725) on jg1-w-11.c.maclab-ukbb.internal, executor 73: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2059] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 427.13 in stage 0.0 (TID 5127, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 427, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 993.0 in stage 0.0 (TID 5128, jg1-w-76.c.maclab-ukbb.internal, executor 61, partition 993, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 778.8 in stage 0.0 (TID 4857) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2060] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 918.7 in stage 0.0 (TID 4847) on jg1-w-76.c.maclab-ukbb.internal, executor 61: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2061] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 918.8 in stage 0.0 (TID 5129, jg1-w-22.c.maclab-ukbb.internal, executor 11, partition 918, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 408.16 in stage 0.0 (TID 4836) on jg1-w-22.c.maclab-ukbb.internal, executor 11: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2062] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 408.17 in stage 0.0 (TID 5130, jg1-w-76.c.maclab-ukbb.internal, executor 92, partition 408, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 288.12 in stage 0.0 (TID 4671) on jg1-w-76.c.maclab-ukbb.internal, executor 92: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2063] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 288.13 in stage 0.0 (TID 5131, jg1-w-86.c.maclab-ukbb.internal, executor 65, partition 288, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 814.8 in stage 0.0 (TID 4518) on jg1-w-86.c.maclab-ukbb.internal, executor 65: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2064] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 814.9 in stage 0.0 (TID 5132, jg1-w-26.c.maclab-ukbb.internal, executor 16, partition 814, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 778.9 in stage 0.0 (TID 5133, jg1-w-27.c.maclab-ukbb.internal, executor 175, partition 778, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 919.6 in stage 0.0 (TID 4855) on jg1-w-27.c.maclab-ukbb.internal, executor 175: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2065] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 477.7 in stage 0.0 (TID 4738) on jg1-w-26.c.maclab-ukbb.internal, executor 16: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2066] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 477.8 in stage 0.0 (TID 5134, jg1-w-12.c.maclab-ukbb.internal, executor 51, partition 477, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 331.14 in stage 0.0 (TID 4872) on jg1-w-12.c.maclab-ukbb.internal, executor 51: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2067] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 331.15 in stage 0.0 (TID 5135, jg1-w-52.c.maclab-ukbb.internal, executor 138, partition 331, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 220.15 in stage 0.0 (TID 4843) on jg1-w-52.c.maclab-ukbb.internal, executor 138: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2068] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 220.16 in stage 0.0 (TID 5136, jg1-w-7.c.maclab-ukbb.internal, executor 120, partition 220, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 699.11 in stage 0.0 (TID 4835) on jg1-w-7.c.maclab-ukbb.internal, executor 120: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2069] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 699.12 in stage 0.0 (TID 5137, jg1-w-27.c.maclab-ukbb.internal, executor 149, partition 699, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 81.14 in stage 0.0 (TID 4833) on jg1-w-27.c.maclab-ukbb.internal, executor 149: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2070] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 81.15 in stage 0.0 (TID 5138, jg1-w-51.c.maclab-ukbb.internal, executor 50, partition 81, PROCESS_LOCAL, 8910 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 205.13 in stage 0.0 (TID 4860) on jg1-w-51.c.maclab-ukbb.internal, executor 50: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2071] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 205.14 in stage 0.0 (TID 5139, jg1-w-65.c.maclab-ukbb.internal, executor 4, partition 205, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 777.10 in stage 0.0 (TID 4679) on jg1-w-65.c.maclab-ukbb.internal, executor 4: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2072] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 777.11 in stage 0.0 (TID 5140, jg1-w-5.c.maclab-ukbb.internal, executor 119, partition 777, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 1.17 in stage 0.0 (TID 4825) on jg1-w-5.c.maclab-ukbb.internal, executor 119: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2073] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 1.18 in stage 0.0 (TID 5141, jg1-w-10.c.maclab-ukbb.internal, executor 160, partition 1, PROCESS_LOCAL, 8908 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 789.10 in stage 0.0 (TID 4853) on jg1-w-10.c.maclab-ukbb.internal, executor 160: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2074] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 789.11 in stage 0.0 (TID 5142, jg1-w-19.c.maclab-ukbb.internal, executor 133, partition 789, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 719.12 in stage 0.0 (TID 4913) on jg1-w-19.c.maclab-ukbb.internal, executor 133: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2075] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 719.13 in stage 0.0 (TID 5143, jg1-w-31.c.maclab-ukbb.internal, executor 158, partition 719, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 206.15 in stage 0.0 (TID 4861) on jg1-w-31.c.maclab-ukbb.internal, executor 158: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2076] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 206.16 in stage 0.0 (TID 5144, jg1-w-78.c.maclab-ukbb.internal, executor 10, partition 206, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 368.8 in stage 0.0 (TID 4752) on jg1-w-78.c.maclab-ukbb.internal, executor 10: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2077] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 368.9 in stage 0.0 (TID 5145, jg1-w-93.c.maclab-ukbb.internal, executor 113, partition 368, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 359.11 in stage 0.0 (TID 4840) on jg1-w-93.c.maclab-ukbb.internal, executor 113: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2078] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 359.12 in stage 0.0 (TID 5146, jg1-w-75.c.maclab-ukbb.internal, executor 54, partition 359, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 506.13 in stage 0.0 (TID 4914) on jg1-w-75.c.maclab-ukbb.internal, executor 54: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2079] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 506.14 in stage 0.0 (TID 5147, jg1-w-36.c.maclab-ukbb.internal, executor 162, partition 506, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 592.12 in stage 0.0 (TID 4881) on jg1-w-36.c.maclab-ukbb.internal, executor 162: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2080] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 592.13 in stage 0.0 (TID 5148, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 592, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 491.10 in stage 0.0 (TID 4735) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2081] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 491.11 in stage 0.0 (TID 5149, jg1-w-34.c.maclab-ukbb.internal, executor 188, partition 491, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 762.12 in stage 0.0 (TID 4891) on jg1-w-34.c.maclab-ukbb.internal, executor 188: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2082] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 762.13 in stage 0.0 (TID 5150, jg1-w-73.c.maclab-ukbb.internal, executor 97, partition 762, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 415.16 in stage 0.0 (TID 4916) on jg1-w-73.c.maclab-ukbb.internal, executor 97: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2083] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 415.17 in stage 0.0 (TID 5151, jg1-w-1.c.maclab-ukbb.internal, executor 80, partition 415, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 989.0 in stage 0.0 (TID 4751) on jg1-w-1.c.maclab-ukbb.internal, executor 80: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2084] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 989.1 in stage 0.0 (TID 5152, jg1-w-35.c.maclab-ukbb.internal, executor 36, partition 989, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 186.12 in stage 0.0 (TID 4594) on jg1-w-35.c.maclab-ukbb.internal, executor 36: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2085] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 186.13 in stage 0.0 (TID 5153, jg1-w-6.c.maclab-ukbb.internal, executor 176, partition 186, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 776.9 in stage 0.0 (TID 4740) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2086] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 776.10 in stage 0.0 (TID 5154, jg1-w-71.c.maclab-ukbb.internal, executor 89, partition 776, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 728.12 in stage 0.0 (TID 4895) on jg1-w-71.c.maclab-ukbb.internal, executor 89: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2087] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 728.13 in stage 0.0 (TID 5155, jg1-w-35.c.maclab-ukbb.internal, executor 66, partition 728, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 390.10 in stage 0.0 (TID 4237) on jg1-w-35.c.maclab-ukbb.internal, executor 66: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2088] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 390.11 in stage 0.0 (TID 5156, jg1-w-98.c.maclab-ukbb.internal, executor 94, partition 390, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 106.12 in stage 0.0 (TID 4813) on jg1-w-98.c.maclab-ukbb.internal, executor 94: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2089] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 106.13 in stage 0.0 (TID 5157, jg1-w-13.c.maclab-ukbb.internal, executor 55, partition 106, PROCESS_LOCAL, 8911 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 594.10 in stage 0.0 (TID 4767) on jg1-w-13.c.maclab-ukbb.internal, executor 55: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2090] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 594.11 in stage 0.0 (TID 5158, jg1-w-67.c.maclab-ukbb.internal, executor 110, partition 594, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 744.10 in stage 0.0 (TID 4866) on jg1-w-67.c.maclab-ukbb.internal, executor 110: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2091] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 744.11 in stage 0.0 (TID 5159, jg1-w-59.c.maclab-ukbb.internal, executor 164, partition 744, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 850.6 in stage 0.0 (TID 4768) on jg1-w-59.c.maclab-ukbb.internal, executor 164: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2092] 2020-04-02 15:10:59 TaskSetManager: INFO: Starting task 850.7 in stage 0.0 (TID 5160, jg1-w-80.c.maclab-ukbb.internal, executor 13, partition 850, PROCESS_LOCAL, 8912 bytes) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 0.19 in stage 0.0 (TID 4830) on jg1-w-80.c.maclab-ukbb.internal, executor 13: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2093] 2020-04-02 15:10:59 TaskSetManager: ERROR: Task 0 in stage 0.0 failed 20 times; aborting job 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 793.8 in stage 0.0 (TID 4746) on jg1-w-37.c.maclab-ukbb.internal, executor 9: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2094] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 694.11 in stage 0.0 (TID 4773) on jg1-w-25.c.maclab-ukbb.internal, executor 23: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2095] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 361.10 in stage 0.0 (TID 4801) on jg1-w-64.c.maclab-ukbb.internal, executor 40: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2096] 2020-04-02 15:10:59 YarnScheduler: INFO: Cancelling stage 0 2020-04-02 15:10:59 YarnScheduler: INFO: Killing all running tasks in stage 0: Stage cancelled 2020-04-02 15:10:59 YarnScheduler: INFO: Stage 0 was cancelled 2020-04-02 15:10:59 DAGScheduler: INFO: ResultStage 0 (collect at ContextRDD.scala:223) failed in 46.440 s due to Job aborted due to stage failure: Task 0 in stage 0.0 failed 20 times, most recent failure: Lost task 0.19 in stage 0.0 (TID 4830, jg1-w-80.c.maclab-ukbb.internal, executor 13): is.hail.utils.HailException: cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64} at is.hail.utils.ErrorHandling$class.fatal(ErrorHandling.scala:9) at is.hail.utils.package$.fatal(package.scala:74) at is.hail.annotations.RegionValueBuilder.setMissing(RegionValueBuilder.scala:210) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:953) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:946) at is.hail.utils.FlipbookIterator$$anon$5.(FlipbookIterator.scala:176) at is.hail.utils.FlipbookIterator.map(FlipbookIterator.scala:174) at is.hail.utils.FlipbookIterator.map(FlipbookIterator.scala:145) at is.hail.rvd.RVD$$anonfun$26.apply(RVD.scala:946) at is.hail.rvd.RVD$$anonfun$26.apply(RVD.scala:942) at is.hail.rvd.KeyedRVD$$anonfun$orderedLeftJoinDistinct$1.apply(KeyedRVD.scala:147) at is.hail.rvd.KeyedRVD$$anonfun$orderedLeftJoinDistinct$1.apply(KeyedRVD.scala:146) at is.hail.sparkextras.ContextRDD$$anonfun$czipPartitions$1$$anonfun$apply$22.apply(ContextRDD.scala:340) at is.hail.sparkextras.ContextRDD$$anonfun$czipPartitions$1$$anonfun$apply$22.apply(ContextRDD.scala:340) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16$$anonfun$apply$17.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16$$anonfun$apply$17.apply(ContextRDD.scala:281) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:462) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:106) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:102) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:102) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:101) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:101) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:99) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:99) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:97) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:97) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:95) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$.writeSplitRegion(RichContextRDDRegionValue.scala:95) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:901) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:899) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310) at scala.collection.AbstractIterator.to(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289) at scala.collection.AbstractIterator.toArray(Iterator.scala:1334) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) Driver stacktrace: 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 505.12 in stage 0.0 (TID 4667) on jg1-w-45.c.maclab-ukbb.internal, executor 68: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2097] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 418.11 in stage 0.0 (TID 4436) on jg1-w-12.c.maclab-ukbb.internal, executor 32: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2098] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 160.11 in stage 0.0 (TID 4686) on jg1-w-38.c.maclab-ukbb.internal, executor 28: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2099] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 435.13 in stage 0.0 (TID 4870) on jg1-w-6.c.maclab-ukbb.internal, executor 176: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2100] 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 347.13 in stage 0.0 (TID 4845) on jg1-w-66.c.maclab-ukbb.internal, executor 184: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2101] 2020-04-02 15:10:59 DAGScheduler: INFO: Job 0 failed: collect at ContextRDD.scala:223, took 47.176497 s 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 781.11 in stage 0.0 (TID 4873, jg1-w-83.c.maclab-ukbb.internal, executor 145): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 634.9 in stage 0.0 (TID 4815, jg1-w-86.c.maclab-ukbb.internal, executor 96): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 154.19 in stage 0.0 (TID 4915, jg1-w-80.c.maclab-ukbb.internal, executor 13): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 54.10 in stage 0.0 (TID 4785, jg1-w-91.c.maclab-ukbb.internal, executor 59): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 655.9 in stage 0.0 (TID 4414, jg1-w-93.c.maclab-ukbb.internal, executor 144): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 root: ERROR: HailException: cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64} From java.lang.RuntimeException: error while applying lowering 'InterpretNonCompilable' at is.hail.expr.ir.lowering.LoweringPipeline$$anonfun$apply$1.apply(LoweringPipeline.scala:26) at is.hail.expr.ir.lowering.LoweringPipeline$$anonfun$apply$1.apply(LoweringPipeline.scala:18) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:35) at is.hail.expr.ir.lowering.LoweringPipeline.apply(LoweringPipeline.scala:18) at is.hail.expr.ir.CompileAndEvaluate$._apply(CompileAndEvaluate.scala:27) at is.hail.backend.Backend.is$hail$backend$Backend$$_execute(Backend.scala:90) at is.hail.backend.Backend$$anonfun$execute$1.apply(Backend.scala:78) at is.hail.backend.Backend$$anonfun$execute$1.apply(Backend.scala:77) at is.hail.utils.package$.using(package.scala:602) at is.hail.expr.ir.ExecuteContext$$anonfun$scoped$1.apply(ExecuteContext.scala:10) at is.hail.expr.ir.ExecuteContext$$anonfun$scoped$1.apply(ExecuteContext.scala:9) at is.hail.utils.package$.using(package.scala:602) at is.hail.annotations.Region$.scoped(Region.scala:18) at is.hail.expr.ir.ExecuteContext$.scoped(ExecuteContext.scala:9) at is.hail.backend.Backend.execute(Backend.scala:77) at is.hail.backend.Backend.executeJSON(Backend.scala:96) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244) at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357) at py4j.Gateway.invoke(Gateway.java:282) at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132) at py4j.commands.CallCommand.execute(CallCommand.java:79) at py4j.GatewayConnection.run(GatewayConnection.java:238) at java.lang.Thread.run(Thread.java:748) org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 0.0 failed 20 times, most recent failure: Lost task 0.19 in stage 0.0 (TID 4830, jg1-w-80.c.maclab-ukbb.internal, executor 13): is.hail.utils.HailException: cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64} at is.hail.utils.ErrorHandling$class.fatal(ErrorHandling.scala:9) at is.hail.utils.package$.fatal(package.scala:74) at is.hail.annotations.RegionValueBuilder.setMissing(RegionValueBuilder.scala:210) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:953) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:946) at is.hail.utils.FlipbookIterator$$anon$5.(FlipbookIterator.scala:176) at is.hail.utils.FlipbookIterator.map(FlipbookIterator.scala:174) at is.hail.utils.FlipbookIterator.map(FlipbookIterator.scala:145) at is.hail.rvd.RVD$$anonfun$26.apply(RVD.scala:946) at is.hail.rvd.RVD$$anonfun$26.apply(RVD.scala:942) at is.hail.rvd.KeyedRVD$$anonfun$orderedLeftJoinDistinct$1.apply(KeyedRVD.scala:147) at is.hail.rvd.KeyedRVD$$anonfun$orderedLeftJoinDistinct$1.apply(KeyedRVD.scala:146) at is.hail.sparkextras.ContextRDD$$anonfun$czipPartitions$1$$anonfun$apply$22.apply(ContextRDD.scala:340) at is.hail.sparkextras.ContextRDD$$anonfun$czipPartitions$1$$anonfun$apply$22.apply(ContextRDD.scala:340) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16$$anonfun$apply$17.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16$$anonfun$apply$17.apply(ContextRDD.scala:281) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:462) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:106) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:102) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:102) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:101) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:101) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:99) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:99) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:97) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:97) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:95) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$.writeSplitRegion(RichContextRDDRegionValue.scala:95) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:901) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:899) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310) at scala.collection.AbstractIterator.to(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289) at scala.collection.AbstractIterator.toArray(Iterator.scala:1334) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) Driver stacktrace: at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1892) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1880) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1879) at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48) at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1879) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:927) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:927) at scala.Option.foreach(Option.scala:257) at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:927) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2113) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2062) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2051) at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49) at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:738) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2082) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2101) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2126) at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:990) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112) at org.apache.spark.rdd.RDD.withScope(RDD.scala:385) at org.apache.spark.rdd.RDD.collect(RDD.scala:989) at is.hail.sparkextras.ContextRDD.collect(ContextRDD.scala:223) at is.hail.rvd.RVD.writeRowsSplit(RVD.scala:915) at is.hail.expr.ir.MatrixValue.write(MatrixValue.scala:214) at is.hail.expr.ir.MatrixNativeWriter.apply(MatrixWriter.scala:39) at is.hail.expr.ir.WrappedMatrixWriter.apply(MatrixWriter.scala:24) at is.hail.expr.ir.Interpret$.run(Interpret.scala:586) at is.hail.expr.ir.Interpret$.alreadyLowered(Interpret.scala:54) at is.hail.expr.ir.InterpretNonCompilable$.interpretAndCoerce$1(InterpretNonCompilable.scala:16) at is.hail.expr.ir.InterpretNonCompilable$.is$hail$expr$ir$InterpretNonCompilable$$rewrite$1(InterpretNonCompilable.scala:53) at is.hail.expr.ir.InterpretNonCompilable$.apply(InterpretNonCompilable.scala:58) at is.hail.expr.ir.lowering.InterpretNonCompilablePass$.transform(LoweringPass.scala:50) at is.hail.expr.ir.lowering.LoweringPass$$anonfun$apply$3$$anonfun$1.apply(LoweringPass.scala:15) at is.hail.expr.ir.lowering.LoweringPass$$anonfun$apply$3$$anonfun$1.apply(LoweringPass.scala:15) at is.hail.utils.ExecutionTimer.time(ExecutionTimer.scala:69) at is.hail.expr.ir.lowering.LoweringPass$$anonfun$apply$3.apply(LoweringPass.scala:15) at is.hail.expr.ir.lowering.LoweringPass$$anonfun$apply$3.apply(LoweringPass.scala:13) at is.hail.utils.ExecutionTimer.time(ExecutionTimer.scala:69) at is.hail.expr.ir.lowering.LoweringPass$class.apply(LoweringPass.scala:13) at is.hail.expr.ir.lowering.InterpretNonCompilablePass$.apply(LoweringPass.scala:45) at is.hail.expr.ir.lowering.LoweringPipeline$$anonfun$apply$1.apply(LoweringPipeline.scala:20) at is.hail.expr.ir.lowering.LoweringPipeline$$anonfun$apply$1.apply(LoweringPipeline.scala:18) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:35) at is.hail.expr.ir.lowering.LoweringPipeline.apply(LoweringPipeline.scala:18) at is.hail.expr.ir.CompileAndEvaluate$._apply(CompileAndEvaluate.scala:27) at is.hail.backend.Backend.is$hail$backend$Backend$$_execute(Backend.scala:90) at is.hail.backend.Backend$$anonfun$execute$1.apply(Backend.scala:78) at is.hail.backend.Backend$$anonfun$execute$1.apply(Backend.scala:77) at is.hail.utils.package$.using(package.scala:602) at is.hail.expr.ir.ExecuteContext$$anonfun$scoped$1.apply(ExecuteContext.scala:10) at is.hail.expr.ir.ExecuteContext$$anonfun$scoped$1.apply(ExecuteContext.scala:9) at is.hail.utils.package$.using(package.scala:602) at is.hail.annotations.Region$.scoped(Region.scala:18) at is.hail.expr.ir.ExecuteContext$.scoped(ExecuteContext.scala:9) at is.hail.backend.Backend.execute(Backend.scala:77) at is.hail.backend.Backend.executeJSON(Backend.scala:96) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244) at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357) at py4j.Gateway.invoke(Gateway.java:282) at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132) at py4j.commands.CallCommand.execute(CallCommand.java:79) at py4j.GatewayConnection.run(GatewayConnection.java:238) at java.lang.Thread.run(Thread.java:748) is.hail.utils.HailException: cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64} at is.hail.utils.ErrorHandling$class.fatal(ErrorHandling.scala:9) at is.hail.utils.package$.fatal(package.scala:74) at is.hail.annotations.RegionValueBuilder.setMissing(RegionValueBuilder.scala:210) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:953) at is.hail.rvd.RVD$$anonfun$26$$anonfun$apply$17.apply(RVD.scala:946) at is.hail.utils.FlipbookIterator$$anon$5.(FlipbookIterator.scala:176) at is.hail.utils.FlipbookIterator.map(FlipbookIterator.scala:174) at is.hail.utils.FlipbookIterator.map(FlipbookIterator.scala:145) at is.hail.rvd.RVD$$anonfun$26.apply(RVD.scala:946) at is.hail.rvd.RVD$$anonfun$26.apply(RVD.scala:942) at is.hail.rvd.KeyedRVD$$anonfun$orderedLeftJoinDistinct$1.apply(KeyedRVD.scala:147) at is.hail.rvd.KeyedRVD$$anonfun$orderedLeftJoinDistinct$1.apply(KeyedRVD.scala:146) at is.hail.sparkextras.ContextRDD$$anonfun$czipPartitions$1$$anonfun$apply$22.apply(ContextRDD.scala:340) at is.hail.sparkextras.ContextRDD$$anonfun$czipPartitions$1$$anonfun$apply$22.apply(ContextRDD.scala:340) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16$$anonfun$apply$17.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16$$anonfun$apply$17.apply(ContextRDD.scala:281) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:462) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:439) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:106) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3$$anonfun$apply$4.apply(RichContextRDDRegionValue.scala:102) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:102) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2$$anonfun$apply$3.apply(RichContextRDDRegionValue.scala:101) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:101) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1$$anonfun$apply$2.apply(RichContextRDDRegionValue.scala:99) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:99) at is.hail.io.RichContextRDDRegionValue$$anonfun$2$$anonfun$apply$1.apply(RichContextRDDRegionValue.scala:97) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:97) at is.hail.io.RichContextRDDRegionValue$$anonfun$2.apply(RichContextRDDRegionValue.scala:95) at is.hail.utils.package$.using(package.scala:602) at is.hail.io.fs.HadoopFS.writeFile(HadoopFS.scala:406) at is.hail.io.RichContextRDDRegionValue$.writeSplitRegion(RichContextRDDRegionValue.scala:95) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:901) at is.hail.rvd.RVD$$anonfun$25.apply(RVD.scala:899) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$cmapPartitionsWithIndex$1$$anonfun$apply$16.apply(ContextRDD.scala:281) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at is.hail.sparkextras.ContextRDD$$anonfun$run$1$$anonfun$apply$8.apply(ContextRDD.scala:219) at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:435) at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:441) at scala.collection.Iterator$class.foreach(Iterator.scala:891) at scala.collection.AbstractIterator.foreach(Iterator.scala:1334) at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104) at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48) at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310) at scala.collection.AbstractIterator.to(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302) at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1334) at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289) at scala.collection.AbstractIterator.toArray(Iterator.scala:1334) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$15.apply(RDD.scala:990) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2101) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 511.13 in stage 0.0 (TID 4948, jg1-w-39.c.maclab-ukbb.internal, executor 137): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 767.9 in stage 0.0 (TID 4908, jg1-w-46.c.maclab-ukbb.internal, executor 156): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 489.11 in stage 0.0 (TID 4912, jg1-w-45.c.maclab-ukbb.internal, executor 68): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 158.15 in stage 0.0 (TID 4931, jg1-w-79.c.maclab-ukbb.internal, executor 45): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 862.7 in stage 0.0 (TID 4788, jg1-w-31.c.maclab-ukbb.internal, executor 183): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 916.5 in stage 0.0 (TID 4728, jg1-w-49.c.maclab-ukbb.internal, executor 43): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 607.8 in stage 0.0 (TID 4673, jg1-w-33.c.maclab-ukbb.internal, executor 107): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 535.12 in stage 0.0 (TID 4894, jg1-w-20.c.maclab-ukbb.internal, executor 6): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 790.9 in stage 0.0 (TID 4917, jg1-w-83.c.maclab-ukbb.internal, executor 85): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 246.12 in stage 0.0 (TID 4837, jg1-w-26.c.maclab-ukbb.internal, executor 21): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 52.17 in stage 0.0 (TID 4923, jg1-w-62.c.maclab-ukbb.internal, executor 60): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 597.11 in stage 0.0 (TID 4839, jg1-w-44.c.maclab-ukbb.internal, executor 105): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 39.14 in stage 0.0 (TID 4844, jg1-w-74.c.maclab-ukbb.internal, executor 193): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 543.11 in stage 0.0 (TID 4885, jg1-w-60.c.maclab-ukbb.internal, executor 15): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 333.14 in stage 0.0 (TID 4899, jg1-w-52.c.maclab-ukbb.internal, executor 106): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 627.12 in stage 0.0 (TID 4883, jg1-w-59.c.maclab-ukbb.internal, executor 190): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 951.4 in stage 0.0 (TID 4807, jg1-w-15.c.maclab-ukbb.internal, executor 83): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 58.16 in stage 0.0 (TID 4826, jg1-w-49.c.maclab-ukbb.internal, executor 24): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 625.11 in stage 0.0 (TID 4831, jg1-w-80.c.maclab-ukbb.internal, executor 18): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 215.7 in stage 0.0 (TID 4471, jg1-w-95.c.maclab-ukbb.internal, executor 74): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 715.9 in stage 0.0 (TID 4803, jg1-w-14.c.maclab-ukbb.internal, executor 161): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 818.8 in stage 0.0 (TID 4426, jg1-w-24.c.maclab-ukbb.internal, executor 157): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 406.14 in stage 0.0 (TID 4889, jg1-w-4.c.maclab-ukbb.internal, executor 173): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 50.14 in stage 0.0 (TID 4863, jg1-w-9.c.maclab-ukbb.internal, executor 77): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 759.10 in stage 0.0 (TID 4926, jg1-w-16.c.maclab-ukbb.internal, executor 34): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 111.12 in stage 0.0 (TID 4816, jg1-w-53.c.maclab-ukbb.internal, executor 35): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 803.10 in stage 0.0 (TID 4882) on jg1-w-85.c.maclab-ukbb.internal, executor 63: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2102] 2020-04-02 15:10:59 Hail: INFO: copying log to 'gs://broad-ukbb/broad.freeze_6/temp/logs/apply_hard_filters.log'... 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 462.10 in stage 0.0 (TID 4865, jg1-w-17.c.maclab-ukbb.internal, executor 166): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 309.10 in stage 0.0 (TID 4814, jg1-w-71.c.maclab-ukbb.internal, executor 89): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 191.12 in stage 0.0 (TID 4820, jg1-w-48.c.maclab-ukbb.internal, executor 67): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 508.9 in stage 0.0 (TID 4818, jg1-w-2.c.maclab-ukbb.internal, executor 79): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 657.9 in stage 0.0 (TID 4766, jg1-w-14.c.maclab-ukbb.internal, executor 186): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 861.9 in stage 0.0 (TID 4932, jg1-w-23.c.maclab-ukbb.internal, executor 46): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 153.13 in stage 0.0 (TID 4907, jg1-w-10.c.maclab-ukbb.internal, executor 160): TaskKilled (Stage cancelled) 2020-04-02 15:10:59 TaskSetManager: INFO: Lost task 242.11 in stage 0.0 (TID 4869) on jg1-w-42.c.maclab-ukbb.internal, executor 167: is.hail.utils.HailException (cannot set missing field for required type +PCStruct{pct_samples_20x:PFloat64}) [duplicate 2103] 2020-04-02 15:10:59 TaskSetManager: WARN: Lost task 698.9 in stage 0.0 (TID 4779, jg1-w-49.c.maclab-ukbb.internal, executor 24): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 409.14 in stage 0.0 (TID 4892, jg1-w-63.c.maclab-ukbb.internal, executor 52): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 949.4 in stage 0.0 (TID 4927, jg1-w-26.c.maclab-ukbb.internal, executor 21): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 791.10 in stage 0.0 (TID 4911, jg1-w-3.c.maclab-ukbb.internal, executor 125): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 345.12 in stage 0.0 (TID 4874, jg1-w-58.c.maclab-ukbb.internal, executor 170): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 155.10 in stage 0.0 (TID 4692, jg1-w-83.c.maclab-ukbb.internal, executor 85): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 693.7 in stage 0.0 (TID 4775, jg1-w-62.c.maclab-ukbb.internal, executor 2): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 539.9 in stage 0.0 (TID 4757, jg1-w-10.c.maclab-ukbb.internal, executor 185): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 829.10 in stage 0.0 (TID 4945, jg1-w-78.c.maclab-ukbb.internal, executor 10): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 169.13 in stage 0.0 (TID 4792, jg1-w-73.c.maclab-ukbb.internal, executor 97): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 517.12 in stage 0.0 (TID 4898, jg1-w-95.c.maclab-ukbb.internal, executor 74): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 31.13 in stage 0.0 (TID 4794, jg1-w-17.c.maclab-ukbb.internal, executor 191): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 140.12 in stage 0.0 (TID 4724, jg1-w-56.c.maclab-ukbb.internal, executor 22): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 201.14 in stage 0.0 (TID 4946, jg1-w-39.c.maclab-ukbb.internal, executor 104): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 598.13 in stage 0.0 (TID 4969, jg1-w-58.c.maclab-ukbb.internal, executor 195): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 289.13 in stage 0.0 (TID 4884, jg1-w-34.c.maclab-ukbb.internal, executor 163): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 709.11 in stage 0.0 (TID 4956, jg1-w-0.c.maclab-ukbb.internal, executor 112): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 526.10 in stage 0.0 (TID 4777, jg1-w-66.c.maclab-ukbb.internal, executor 159): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 310.15 in stage 0.0 (TID 4918, jg1-w-99.c.maclab-ukbb.internal, executor 30): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 593.13 in stage 0.0 (TID 4934, jg1-w-24.c.maclab-ukbb.internal, executor 182): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 414.13 in stage 0.0 (TID 4904, jg1-w-11.c.maclab-ukbb.internal, executor 117): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 439.11 in stage 0.0 (TID 4868, jg1-w-27.c.maclab-ukbb.internal, executor 149): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 769.11 in stage 0.0 (TID 4935, jg1-w-37.c.maclab-ukbb.internal, executor 12): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 3.13 in stage 0.0 (TID 4700, jg1-w-21.c.maclab-ukbb.internal, executor 27): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 843.8 in stage 0.0 (TID 4909, jg1-w-15.c.maclab-ukbb.internal, executor 83): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 553.8 in stage 0.0 (TID 4880, jg1-w-52.c.maclab-ukbb.internal, executor 138): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 667.8 in stage 0.0 (TID 4856, jg1-w-44.c.maclab-ukbb.internal, executor 139): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 942.3 in stage 0.0 (TID 4538, jg1-w-65.c.maclab-ukbb.internal, executor 4): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 351.15 in stage 0.0 (TID 4958, jg1-w-48.c.maclab-ukbb.internal, executor 67): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 896.5 in stage 0.0 (TID 4579, jg1-w-93.c.maclab-ukbb.internal, executor 113): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 804.7 in stage 0.0 (TID 4822, jg1-w-50.c.maclab-ukbb.internal, executor 19): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 834.8 in stage 0.0 (TID 4634, jg1-w-39.c.maclab-ukbb.internal, executor 137): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 474.12 in stage 0.0 (TID 4929, jg1-w-81.c.maclab-ukbb.internal, executor 111): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 443.15 in stage 0.0 (TID 4996, jg1-w-29.c.maclab-ukbb.internal, executor 58): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 788.4 in stage 0.0 (TID 4449, jg1-w-55.c.maclab-ukbb.internal, executor 165): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 170.15 in stage 0.0 (TID 4943, jg1-w-84.c.maclab-ukbb.internal, executor 75): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 838.9 in stage 0.0 (TID 4941, jg1-w-56.c.maclab-ukbb.internal, executor 17): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 798.7 in stage 0.0 (TID 4778, jg1-w-40.c.maclab-ukbb.internal, executor 72): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 277.11 in stage 0.0 (TID 4938, jg1-w-52.c.maclab-ukbb.internal, executor 106): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 849.9 in stage 0.0 (TID 4992, jg1-w-42.c.maclab-ukbb.internal, executor 192): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 702.8 in stage 0.0 (TID 4719, jg1-w-21.c.maclab-ukbb.internal, executor 27): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 392.14 in stage 0.0 (TID 4991, jg1-w-91.c.maclab-ukbb.internal, executor 91): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 948.3 in stage 0.0 (TID 4636, jg1-w-19.c.maclab-ukbb.internal, executor 101): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 658.10 in stage 0.0 (TID 4797, jg1-w-40.c.maclab-ukbb.internal, executor 41): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 970.2 in stage 0.0 (TID 4862, jg1-w-81.c.maclab-ukbb.internal, executor 111): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 355.15 in stage 0.0 (TID 4925, jg1-w-36.c.maclab-ukbb.internal, executor 187): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 780.11 in stage 0.0 (TID 4950, jg1-w-91.c.maclab-ukbb.internal, executor 91): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 257.14 in stage 0.0 (TID 4695, jg1-w-4.c.maclab-ukbb.internal, executor 146): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 107.11 in stage 0.0 (TID 4783, jg1-w-40.c.maclab-ukbb.internal, executor 41): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 198.15 in stage 0.0 (TID 4954, jg1-w-97.c.maclab-ukbb.internal, executor 126): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 727.11 in stage 0.0 (TID 4965, jg1-w-64.c.maclab-ukbb.internal, executor 70): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 644.11 in stage 0.0 (TID 4688, jg1-w-97.c.maclab-ukbb.internal, executor 126): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 946.3 in stage 0.0 (TID 4747, jg1-w-51.c.maclab-ukbb.internal, executor 31): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 185.14 in stage 0.0 (TID 4998, jg1-w-46.c.maclab-ukbb.internal, executor 181): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 796.8 in stage 0.0 (TID 4888, jg1-w-5.c.maclab-ukbb.internal, executor 119): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 407.13 in stage 0.0 (TID 4890, jg1-w-6.c.maclab-ukbb.internal, executor 153): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 218.11 in stage 0.0 (TID 4817, jg1-w-33.c.maclab-ukbb.internal, executor 107): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 604.10 in stage 0.0 (TID 4937, jg1-w-51.c.maclab-ukbb.internal, executor 31): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 350.10 in stage 0.0 (TID 4819, jg1-w-87.c.maclab-ukbb.internal, executor 53): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 711.9 in stage 0.0 (TID 4838, jg1-w-28.c.maclab-ukbb.internal, executor 69): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 199.15 in stage 0.0 (TID 4960, jg1-w-9.c.maclab-ukbb.internal, executor 77): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 142.15 in stage 0.0 (TID 4986, jg1-w-82.c.maclab-ukbb.internal, executor 108): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 64.11 in stage 0.0 (TID 4827, jg1-w-58.c.maclab-ukbb.internal, executor 170): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 426.15 in stage 0.0 (TID 5005, jg1-w-38.c.maclab-ukbb.internal, executor 28): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 248.12 in stage 0.0 (TID 4799, jg1-w-99.c.maclab-ukbb.internal, executor 49): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 971.3 in stage 0.0 (TID 4951, jg1-w-72.c.maclab-ukbb.internal, executor 179): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 520.11 in stage 0.0 (TID 4930, jg1-w-69.c.maclab-ukbb.internal, executor 103): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 991.0 in stage 0.0 (TID 4795, jg1-w-15.c.maclab-ukbb.internal, executor 127): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 217.11 in stage 0.0 (TID 4896, jg1-w-79.c.maclab-ukbb.internal, executor 26): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 718.11 in stage 0.0 (TID 4952, jg1-w-45.c.maclab-ukbb.internal, executor 38): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 697.10 in stage 0.0 (TID 4963, jg1-w-42.c.maclab-ukbb.internal, executor 192): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 972.2 in stage 0.0 (TID 4859, jg1-w-57.c.maclab-ukbb.internal, executor 151): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 280.11 in stage 0.0 (TID 4851, jg1-w-9.c.maclab-ukbb.internal, executor 121): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 492.12 in stage 0.0 (TID 4987, jg1-w-64.c.maclab-ukbb.internal, executor 70): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 903.8 in stage 0.0 (TID 4975, jg1-w-68.c.maclab-ukbb.internal, executor 95): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 109.12 in stage 0.0 (TID 4505, jg1-w-42.c.maclab-ukbb.internal, executor 167): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 475.14 in stage 0.0 (TID 4922, jg1-w-55.c.maclab-ukbb.internal, executor 189): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 151.15 in stage 0.0 (TID 4961, jg1-w-3.c.maclab-ukbb.internal, executor 84): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 653.10 in stage 0.0 (TID 4744, jg1-w-99.c.maclab-ukbb.internal, executor 30): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 326.10 in stage 0.0 (TID 4902, jg1-w-29.c.maclab-ukbb.internal, executor 1): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 63.16 in stage 0.0 (TID 5014, jg1-w-84.c.maclab-ukbb.internal, executor 122): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 878.9 in stage 0.0 (TID 4994, jg1-w-46.c.maclab-ukbb.internal, executor 181): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 729.8 in stage 0.0 (TID 4921, jg1-w-59.c.maclab-ukbb.internal, executor 190): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 939.5 in stage 0.0 (TID 5021, jg1-w-73.c.maclab-ukbb.internal, executor 130): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 943.4 in stage 0.0 (TID 5011, jg1-w-83.c.maclab-ukbb.internal, executor 145): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 175.13 in stage 0.0 (TID 4949, jg1-w-44.c.maclab-ukbb.internal, executor 105): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 774.9 in stage 0.0 (TID 4879, jg1-w-15.c.maclab-ukbb.internal, executor 127): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 143.14 in stage 0.0 (TID 5023, jg1-w-61.c.maclab-ukbb.internal, executor 142): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 761.10 in stage 0.0 (TID 4871, jg1-w-74.c.maclab-ukbb.internal, executor 168): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 964.4 in stage 0.0 (TID 4940, jg1-w-54.c.maclab-ukbb.internal, executor 134): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 786.7 in stage 0.0 (TID 4936, jg1-w-85.c.maclab-ukbb.internal, executor 93): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 75.16 in stage 0.0 (TID 5016, jg1-w-43.c.maclab-ukbb.internal, executor 129): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 848.10 in stage 0.0 (TID 5044, jg1-w-53.c.maclab-ukbb.internal, executor 35): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 957.3 in stage 0.0 (TID 4823, jg1-w-12.c.maclab-ukbb.internal, executor 51): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 554.12 in stage 0.0 (TID 4919, jg1-w-84.c.maclab-ukbb.internal, executor 122): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 912.3 in stage 0.0 (TID 4910, jg1-w-14.c.maclab-ukbb.internal, executor 186): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 270.10 in stage 0.0 (TID 4824, jg1-w-43.c.maclab-ukbb.internal, executor 150): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 493.11 in stage 0.0 (TID 4997, jg1-w-19.c.maclab-ukbb.internal, executor 101): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 704.10 in stage 0.0 (TID 5002, jg1-w-23.c.maclab-ukbb.internal, executor 29): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 164.11 in stage 0.0 (TID 4903, jg1-w-79.c.maclab-ukbb.internal, executor 45): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 544.14 in stage 0.0 (TID 5041, jg1-w-48.c.maclab-ukbb.internal, executor 37): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 187.16 in stage 0.0 (TID 5010, jg1-w-90.c.maclab-ukbb.internal, executor 25): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 725.8 in stage 0.0 (TID 4893, jg1-w-7.c.maclab-ukbb.internal, executor 78): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 612.10 in stage 0.0 (TID 4962, jg1-w-98.c.maclab-ukbb.internal, executor 62): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 487.15 in stage 0.0 (TID 5033, jg1-w-39.c.maclab-ukbb.internal, executor 104): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 654.9 in stage 0.0 (TID 4976, jg1-w-88.c.maclab-ukbb.internal, executor 178): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 53.16 in stage 0.0 (TID 4780, jg1-w-95.c.maclab-ukbb.internal, executor 118): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 588.8 in stage 0.0 (TID 3645, jg1-w-25.c.maclab-ukbb.internal, executor 23): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 568.12 in stage 0.0 (TID 5019, jg1-w-62.c.maclab-ukbb.internal, executor 60): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 897.5 in stage 0.0 (TID 4716, jg1-w-1.c.maclab-ukbb.internal, executor 123): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 354.12 in stage 0.0 (TID 4973, jg1-w-82.c.maclab-ukbb.internal, executor 108): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 764.9 in stage 0.0 (TID 4685, jg1-w-13.c.maclab-ukbb.internal, executor 55): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 736.11 in stage 0.0 (TID 4957, jg1-w-89.c.maclab-ukbb.internal, executor 116): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 852.9 in stage 0.0 (TID 5022, jg1-w-30.c.maclab-ukbb.internal, executor 124): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 609.12 in stage 0.0 (TID 4906, jg1-w-7.c.maclab-ukbb.internal, executor 120): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 681.8 in stage 0.0 (TID 4955, jg1-w-89.c.maclab-ukbb.internal, executor 116): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 195.15 in stage 0.0 (TID 4829, jg1-w-61.c.maclab-ukbb.internal, executor 142): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 399.17 in stage 0.0 (TID 4846, jg1-w-28.c.maclab-ukbb.internal, executor 39): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 401.11 in stage 0.0 (TID 4974, jg1-w-74.c.maclab-ukbb.internal, executor 168): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 947.6 in stage 0.0 (TID 5073, jg1-w-40.c.maclab-ukbb.internal, executor 72): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 444.14 in stage 0.0 (TID 4981, jg1-w-28.c.maclab-ukbb.internal, executor 69): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 461.10 in stage 0.0 (TID 4970, jg1-w-13.c.maclab-ukbb.internal, executor 88): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 601.11 in stage 0.0 (TID 4980, jg1-w-24.c.maclab-ukbb.internal, executor 182): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 659.7 in stage 0.0 (TID 4933, jg1-w-49.c.maclab-ukbb.internal, executor 43): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 366.12 in stage 0.0 (TID 4988, jg1-w-16.c.maclab-ukbb.internal, executor 115): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 275.16 in stage 0.0 (TID 5084, jg1-w-86.c.maclab-ukbb.internal, executor 65): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 400.13 in stage 0.0 (TID 5085, jg1-w-21.c.maclab-ukbb.internal, executor 47): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 346.13 in stage 0.0 (TID 5052, jg1-w-46.c.maclab-ukbb.internal, executor 156): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 854.7 in stage 0.0 (TID 4989, jg1-w-92.c.maclab-ukbb.internal, executor 196): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 113.16 in stage 0.0 (TID 5075, jg1-w-27.c.maclab-ukbb.internal, executor 175): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 91.16 in stage 0.0 (TID 5004, jg1-w-90.c.maclab-ukbb.internal, executor 44): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 683.10 in stage 0.0 (TID 4967, jg1-w-72.c.maclab-ukbb.internal, executor 154): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 282.15 in stage 0.0 (TID 5070, jg1-w-18.c.maclab-ukbb.internal, executor 197): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 340.11 in stage 0.0 (TID 4887, jg1-w-31.c.maclab-ukbb.internal, executor 158): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 992.0 in stage 0.0 (TID 4858, jg1-w-8.c.maclab-ukbb.internal, executor 180): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 985.0 in stage 0.0 (TID 4678, jg1-w-89.c.maclab-ukbb.internal, executor 71): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 660.10 in stage 0.0 (TID 4842, jg1-w-43.c.maclab-ukbb.internal, executor 129): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 670.8 in stage 0.0 (TID 4886, jg1-w-32.c.maclab-ukbb.internal, executor 90): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 47.15 in stage 0.0 (TID 5017, jg1-w-28.c.maclab-ukbb.internal, executor 39): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 121.13 in stage 0.0 (TID 5000, jg1-w-67.c.maclab-ukbb.internal, executor 141): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 202.14 in stage 0.0 (TID 4999, jg1-w-31.c.maclab-ukbb.internal, executor 183): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 742.11 in stage 0.0 (TID 4718, jg1-w-59.c.maclab-ukbb.internal, executor 164): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 799.10 in stage 0.0 (TID 5050, jg1-w-53.c.maclab-ukbb.internal, executor 114): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 856.10 in stage 0.0 (TID 5067, jg1-w-5.c.maclab-ukbb.internal, executor 76): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 973.3 in stage 0.0 (TID 5045, jg1-w-35.c.maclab-ukbb.internal, executor 66): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 19.11 in stage 0.0 (TID 4928, jg1-w-50.c.maclab-ukbb.internal, executor 14): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 880.7 in stage 0.0 (TID 5027, jg1-w-56.c.maclab-ukbb.internal, executor 22): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 730.10 in stage 0.0 (TID 4753, jg1-w-20.c.maclab-ukbb.internal, executor 3): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 SparkContext: INFO: Invoking stop() from shutdown hook 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 855.9 in stage 0.0 (TID 5026, jg1-w-54.c.maclab-ukbb.internal, executor 134): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 AbstractConnector: INFO: Stopped Spark@1126a507{HTTP/1.1,[http/1.1]}{0.0.0.0:4041} 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 428.13 in stage 0.0 (TID 5035, jg1-w-96.c.maclab-ukbb.internal, executor 132): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 846.10 in stage 0.0 (TID 5025, jg1-w-41.c.maclab-ukbb.internal, executor 174): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 SparkUI: INFO: Stopped Spark web UI at http://jg1-m.c.maclab-ukbb.internal:4041 2020-04-02 15:11:00 YarnClientSchedulerBackend: INFO: Interrupting monitor thread 2020-04-02 15:11:00 YarnClientSchedulerBackend: INFO: Shutting down all executors 2020-04-02 15:11:00 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Asking each executor to shut down 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 281.14 in stage 0.0 (TID 5047, jg1-w-3.c.maclab-ukbb.internal, executor 125): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TaskSetManager: WARN: Lost task 572.10 in stage 0.0 (TID 5056, jg1-w-9.c.maclab-ukbb.internal, executor 121): TaskKilled (Stage cancelled) 2020-04-02 15:11:00 TransportRequestHandler: ERROR: Error while invoking RpcHandler#receive() for one-way message. org.apache.spark.SparkException: Could not find CoarseGrainedScheduler. at org.apache.spark.rpc.netty.Dispatcher.postMessage(Dispatcher.scala:160) at org.apache.spark.rpc.netty.Dispatcher.postOneWayMessage(Dispatcher.scala:140) at org.apache.spark.rpc.netty.NettyRpcHandler.receive(NettyRpcEnv.scala:655) at org.apache.spark.network.server.TransportRequestHandler.processOneWayMessage(TransportRequestHandler.java:274) at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:105) at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1422) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:931) at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:163) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:700) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:635) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:552) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:514) at io.netty.util.concurrent.SingleThreadEventExecutor$6.run(SingleThreadEventExecutor.java:1044) at io.netty.util.internal.ThreadExecutorMap$2.run(ThreadExecutorMap.java:74) at io.netty.util.concurrent.FastThreadLocalRunnable.run(FastThreadLocalRunnable.java:30) at java.lang.Thread.run(Thread.java:748) 2020-04-02 15:11:00 SchedulerExtensionServices: INFO: Stopping SchedulerExtensionServices (serviceOption=None, services=List(), started=false) 2020-04-02 15:11:00 YarnClientSchedulerBackend: INFO: Stopped 2020-04-02 15:11:00 TransportRequestHandler: ERROR: Error while invoking RpcHandler#receive() for one-way message. org.apache.spark.SparkException: Could not find CoarseGrainedScheduler. at org.apache.spark.rpc.netty.Dispatcher.postMessage(Dispatcher.scala:160) at org.apache.spark.rpc.netty.Dispatcher.postOneWayMessage(Dispatcher.scala:140) at org.apache.spark.rpc.netty.NettyRpcHandler.receive(NettyRpcEnv.scala:655) at org.apache.spark.network.server.TransportRequestHandler.processOneWayMessage(TransportRequestHandler.java:274) at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:105) at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1422) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:931) at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:163) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:700) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:635) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:552) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:514) at io.netty.util.concurrent.SingleThreadEventExecutor$6.run(SingleThreadEventExecutor.java:1044) at io.netty.util.internal.ThreadExecutorMap$2.run(ThreadExecutorMap.java:74) at io.netty.util.concurrent.FastThreadLocalRunnable.run(FastThreadLocalRunnable.java:30) at java.lang.Thread.run(Thread.java:748) 2020-04-02 15:11:00 TransportRequestHandler: ERROR: Error while invoking RpcHandler#receive() for one-way message. org.apache.spark.SparkException: Could not find CoarseGrainedScheduler. at org.apache.spark.rpc.netty.Dispatcher.postMessage(Dispatcher.scala:160) at org.apache.spark.rpc.netty.Dispatcher.postOneWayMessage(Dispatcher.scala:140) at org.apache.spark.rpc.netty.NettyRpcHandler.receive(NettyRpcEnv.scala:655) at org.apache.spark.network.server.TransportRequestHandler.processOneWayMessage(TransportRequestHandler.java:274) at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:105) at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1422) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:931) at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:163) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:700) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:635) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:552) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:514) at io.netty.util.concurrent.SingleThreadEventExecutor$6.run(SingleThreadEventExecutor.java:1044) at io.netty.util.internal.ThreadExecutorMap$2.run(ThreadExecutorMap.java:74) at io.netty.util.concurrent.FastThreadLocalRunnable.run(FastThreadLocalRunnable.java:30) at java.lang.Thread.run(Thread.java:748) 2020-04-02 15:11:00 TransportRequestHandler: ERROR: Error while invoking RpcHandler#receive() for one-way message. org.apache.spark.SparkException: Could not find CoarseGrainedScheduler. at org.apache.spark.rpc.netty.Dispatcher.postMessage(Dispatcher.scala:160) at org.apache.spark.rpc.netty.Dispatcher.postOneWayMessage(Dispatcher.scala:140) at org.apache.spark.rpc.netty.NettyRpcHandler.receive(NettyRpcEnv.scala:655) at org.apache.spark.network.server.TransportRequestHandler.processOneWayMessage(TransportRequestHandler.java:274) at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:105) at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1422) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:931) at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:163) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:700) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:635) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:552) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:514) at io.netty.util.concurrent.SingleThreadEventExecutor$6.run(SingleThreadEventExecutor.java:1044) at io.netty.util.internal.ThreadExecutorMap$2.run(ThreadExecutorMap.java:74) at io.netty.util.concurrent.FastThreadLocalRunnable.run(FastThreadLocalRunnable.java:30) at java.lang.Thread.run(Thread.java:748) 2020-04-02 15:11:00 TransportRequestHandler: ERROR: Error while invoking RpcHandler#receive() for one-way message. org.apache.spark.SparkException: Could not find CoarseGrainedScheduler. at org.apache.spark.rpc.netty.Dispatcher.postMessage(Dispatcher.scala:160) at org.apache.spark.rpc.netty.Dispatcher.postOneWayMessage(Dispatcher.scala:140) at org.apache.spark.rpc.netty.NettyRpcHandler.receive(NettyRpcEnv.scala:655) at org.apache.spark.network.server.TransportRequestHandler.processOneWayMessage(TransportRequestHandler.java:274) at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:105) at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1422) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:931) at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:163) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:700) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:635) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:552) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:514) at io.netty.util.concurrent.SingleThreadEventExecutor$6.run(SingleThreadEventExecutor.java:1044) at io.netty.util.internal.ThreadExecutorMap$2.run(ThreadExecutorMap.java:74) at io.netty.util.concurrent.FastThreadLocalRunnable.run(FastThreadLocalRunnable.java:30) at java.lang.Thread.run(Thread.java:748) 2020-04-02 15:11:00 TransportRequestHandler: ERROR: Error while invoking RpcHandler#receive() for one-way message. org.apache.spark.SparkException: Could not find CoarseGrainedScheduler. at org.apache.spark.rpc.netty.Dispatcher.postMessage(Dispatcher.scala:160) at org.apache.spark.rpc.netty.Dispatcher.postOneWayMessage(Dispatcher.scala:140) at org.apache.spark.rpc.netty.NettyRpcHandler.receive(NettyRpcEnv.scala:655) at org.apache.spark.network.server.TransportRequestHandler.processOneWayMessage(TransportRequestHandler.java:274) at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:105) at org.apache.spark.network.server.TransportChannelHandler.channelRead(TransportChannelHandler.java:118) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:287) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at org.apache.spark.network.util.TransportFrameDecoder.channelRead(TransportFrameDecoder.java:85) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:352) at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1422) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:374) at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:360) at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:931) at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:163) at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:700) at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:635) at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:552) at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:514) at io.netty.util.concurrent.SingleThreadEventExecutor$6.run(SingleThreadEventExecutor.java:1044) at io.netty.util.internal.ThreadExecutorMap$2.run(ThreadExecutorMap.java:74) at io.netty.util.concurrent.FastThreadLocalRunnable.run(FastThreadLocalRunnable.java:30) at java.lang.Thread.run(Thread.java:748) 2020-04-02 15:11:00 MapOutputTrackerMasterEndpoint: INFO: MapOutputTrackerMasterEndpoint stopped! 2020-04-02 15:11:00 MemoryStore: INFO: MemoryStore cleared 2020-04-02 15:11:00 BlockManager: INFO: BlockManager stopped 2020-04-02 15:11:00 BlockManagerMaster: INFO: BlockManagerMaster stopped 2020-04-02 15:11:00 OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: INFO: OutputCommitCoordinator stopped! 2020-04-02 15:11:00 SparkContext: INFO: Successfully stopped SparkContext 2020-04-02 15:11:00 ShutdownHookManager: INFO: Shutdown hook called 2020-04-02 15:11:00 ShutdownHookManager: INFO: Deleting directory /hadoop/spark/tmp/spark-38dcea62-5379-4abd-818b-0372959fe086 2020-04-02 15:11:00 ShutdownHookManager: INFO: Deleting directory /tmp/spark-6c6b2bd2-85a6-416f-88b3-9d3e505ea21c 2020-04-02 15:11:00 ShutdownHookManager: INFO: Deleting directory /hadoop/spark/tmp/spark-38dcea62-5379-4abd-818b-0372959fe086/pyspark-0c601707-832f-421e-9c88-a405f226138a