2023-08-16 15:03:12.764 Hail: INFO: Running Hail version 0.2.107-2387bb00ceee 2023-08-16 15:03:13.790 SparkContext: WARN: Using an existing SparkContext; some configuration may not take effect. 2023-08-16 15:03:24.940 root: INFO: RegionPool: initialized for thread 16: Thread-4 2023-08-16 15:03:25.405 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.81:48486) with ID 2, ResourceProfileId 0 2023-08-16 15:03:25.417 ExecutorMonitor: INFO: New executor 2 has registered (new total is 1) 2023-08-16 15:03:25.501 BlockManagerMasterEndpoint: INFO: Registering block manager all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal:41599 with 5.2 GiB RAM, BlockManagerId(2, all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal, 41599, None) 2023-08-16 15:03:25.515 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.83:43174) with ID 1, ResourceProfileId 0 2023-08-16 15:03:25.516 ExecutorMonitor: INFO: New executor 1 has registered (new total is 2) 2023-08-16 15:03:25.605 BlockManagerMasterEndpoint: INFO: Registering block manager all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal:39013 with 5.2 GiB RAM, BlockManagerId(1, all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal, 39013, None) 2023-08-16 15:03:25.643 MemoryStore: INFO: Block broadcast_0 stored as values in memory (estimated size 2.3 MiB, free 22.0 GiB) 2023-08-16 15:03:26.412 MemoryStore: INFO: Block broadcast_0_piece0 stored as bytes in memory (estimated size 123.7 KiB, free 22.0 GiB) 2023-08-16 15:03:26.414 BlockManagerInfo: INFO: Added broadcast_0_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 123.7 KiB, free: 22.0 GiB) 2023-08-16 15:03:26.420 SparkContext: INFO: Created broadcast 0 from broadcast at SparkBackend.scala:342 2023-08-16 15:03:29.583 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, thread 16: Thread-4 2023-08-16 15:03:29.584 root: INFO: timing SparkBackend.parse_matrix_ir total 4.647s self 4.647s children 0.000ms %children 0.00% 2023-08-16 15:03:34.533 root: INFO: RegionPool: initialized for thread 16: Thread-4 2023-08-16 15:03:34.935 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, thread 16: Thread-4 2023-08-16 15:03:34.935 root: INFO: timing SparkBackend.parse_value_ir total 402.231ms self 402.231ms children 0.000ms %children 0.00% 2023-08-16 15:03:34.938 root: INFO: RegionPool: initialized for thread 16: Thread-4 2023-08-16 15:03:34.945 root: INFO: starting execution of query hail_query_1 of initial size 532 2023-08-16 15:03:35.342 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 532: (Let __rng_state (RNGStateLiteral) (MakeTuple (0) (Let __uid_30 (ToArray (StreamMap __uid_29 (ToStream False (GetField rows (TableCollect (TableMapRows (MatrixColsTable (MatrixMapCols () (MatrixMapGlobals (MatrixMapCols None (MatrixMapRows (MatrixMapEntries (MatrixMapRows (MatrixUnionRows (MatrixKeyRowsBy (locus alleles) True (MatrixMapRows (MatrixKeyRowsBy (locus) False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterRows (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},col_key:[s],col:Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}},entry:Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt )) (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False))) (Coalesce (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2)) (False))) (Let __cse_1 (GetField alleles (Ref va)) (Let __cse_2 (GetField locus (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (Ref va)) None (__uid_3 (ArraySort __uid_9 __uid_10 (StreamFlatMap __uid_7 (StreamFilter __uid_4 (StreamRange 2 False (I32 1) (ArrayLen (CastToArray (Ref __cse_1))) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __cse_1) (Ref __uid_4)) (Str "*"))) (ToStream False (Let __uid_8 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __cse_2) (MakeArray Array[String] (ApplyIR 7 indexArray () String (Ref __cse_1) (I32 0)) (ApplyIR 8 indexArray () String (Ref __cse_1) (Ref __uid_7)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __uid_8)) (Ref __cse_2)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __uid_8))) (locus (GetField locus (Ref __uid_8))) (a_index (Ref __uid_7)) (was_split (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __uid_9)) (False) (If (IsNA (Ref __uid_10)) (True) (If (False) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_10) (Ref __uid_9)) (I32 0)) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_9) (Ref __uid_10)) (I32 0))))))))))))) (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai old_locus old_alleles) (Let __uid_11 (GetField __uid_3 (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai __uid_3) (Ref va)) None (locus (GetField locus (Ref __uid_11))) (alleles (GetField alleles (Ref __uid_11))) (a_index (GetField a_index (Ref __uid_11))) (was_split (GetField was_split (Ref __uid_11))) (old_locus (GetField locus (Ref va))) (old_alleles (GetField alleles (Ref va)))))))) (MatrixKeyRowsBy (locus alleles) False (MatrixMapRows (MatrixKeyRowsBy () False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterRows (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},col_key:[s],col:Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}},entry:Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt )) (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False))) (Coalesce (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2)) (False))) (Let __cse_3 (GetField alleles (Ref va)) (Let __cse_4 (GetField locus (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (Ref va)) None (__uid_3 (ArraySort __uid_16 __uid_17 (StreamFlatMap __uid_14 (StreamFilter __uid_4 (StreamRange 2 False (I32 1) (ArrayLen (CastToArray (Ref __cse_3))) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __cse_3) (Ref __uid_4)) (Str "*"))) (ToStream False (Let __uid_15 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __cse_4) (MakeArray Array[String] (ApplyIR 13 indexArray () String (Ref __cse_3) (I32 0)) (ApplyIR 14 indexArray () String (Ref __cse_3) (Ref __uid_14)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __uid_15)) (Ref __cse_4)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __uid_15))) (locus (GetField locus (Ref __uid_15))) (a_index (Ref __uid_14)) (was_split (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __uid_16)) (False) (If (IsNA (Ref __uid_17)) (True) (If (False) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_17) (Ref __uid_16)) (I32 0)) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_16) (Ref __uid_17)) (I32 0))))))))))))) (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai old_locus old_alleles) (Let __uid_18 (GetField __uid_3 (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai __uid_3) (Ref va)) None (locus (GetField locus (Ref __uid_18))) (alleles (GetField alleles (Ref __uid_18))) (a_index (GetField a_index (Ref __uid_18))) (was_split (GetField was_split (Ref __uid_18))) (old_locus (GetField locus (Ref va))) (old_alleles (GetField alleles (Ref va))))))))) (Let __cse_5 (GetField vep (Ref va)) (Let __cse_6 (GetField a_index (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai old_locus old_alleles) (Ref va)) None (vep (InsertFields (Ref __cse_5) None (intergenic_consequences (ToArray (StreamFilter __uid_19 (ToStream False (GetField intergenic_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_19)) (Ref __cse_6))))) (motif_feature_consequences (ToArray (StreamFilter __uid_20 (ToStream False (GetField motif_feature_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_20)) (Ref __cse_6))))) (regulatory_feature_consequences (ToArray (StreamFilter __uid_21 (ToStream False (GetField regulatory_feature_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_21)) (Ref __cse_6))))) (transcript_consequences (ToArray (StreamFilter __uid_22 (ToStream False (GetField transcript_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_22)) (Ref __cse_6))))))))))) (Let __cse_10 (GetField a_index (Ref va)) (Let __cse_9 (If (ApplyUnaryPrimOp Bang (IsNA (GetField PL (Ref g)))) (ToArray (StreamMap __uid_24 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (ApplyIR 27 min () Int32 (ToArray (StreamFilter __uid_27 (StreamMap __uid_26 (StreamFilter __uid_25 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (CastToArray (GetField old_alleles (Ref va))))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __uid_25)) (GetField a_index (Ref va)))) (Ref __uid_24))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref g)) (Ref __uid_26))) (ApplyUnaryPrimOp Bang (IsNA (Ref __uid_27)))))))) (NA Array[Int32])) (InsertFields (SelectFields (DP GQ MIN_DP PID RGQ SB GT PGT AD PL adj) (Ref g)) None (GT (Apply 16 downcode () Call (GetField GT (Ref g)) (Ref __cse_10))) (DP (GetField DP (Ref g))) (AD (If (ApplyUnaryPrimOp Bang (IsNA (GetField AD (Ref g)))) (Let __cse_7 (GetField AD (Ref g)) (Let __cse_8 (GetField a_index (Ref va)) (MakeArray Array[Int32] (ApplyBinaryPrimOp Subtract (ApplyIR 17 sum () Int32 (ToArray (StreamFilter __uid_23 (ToStream False (Ref __cse_7)) (ApplyUnaryPrimOp Bang (IsNA (Ref __uid_23)))))) (ApplyIR 18 indexArray () Int32 (Ref __cse_7) (Ref __cse_8))) (ApplyIR 19 indexArray () Int32 (Ref __cse_7) (Ref __cse_8))))) (NA Array[Int32]))) (PL (Ref __cse_9)) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (Ref __cse_9)) (GetField GQ (Ref g)))) (PGT (Apply 29 downcode () Call (GetField PGT (Ref g)) (Ref __cse_10))) (PID (GetField PID (Ref g))))))) (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (MakeStruct (locus (GetField locus (Ref va))) (alleles (GetField alleles (Ref va))) (rsid (GetField rsid (Ref va))) (a_index (GetField a_index (Ref va))) (was_split (GetField was_split (Ref va))) (filters (GetField filters (Ref va))) (info (GetField info (Ref va))) (vep (GetField vep (Ref va))) (vqsr (GetField vqsr (Ref va))) (region_flag (GetField region_flag (Ref va))) (allele_info (GetField allele_info (Ref va))) (hgdp_tgp_freq (GetField hgdp_tgp_freq (Ref va))) (gnomad_freq (GetField gnomad_freq (Ref va))) (gnomad_popmax (GetField gnomad_popmax (Ref va))) (gnomad_faf (GetField gnomad_faf (Ref va))) (gnomad_raw_qual_hists (GetField gnomad_raw_qual_hists (Ref va))) (gnomad_qual_hists (GetField gnomad_qual_hists (Ref va))) (gnomad_age_hist_het (GetField gnomad_age_hist_het (Ref va))) (gnomad_age_hist_hom (GetField gnomad_age_hist_hom (Ref va))) (cadd (GetField cadd (Ref va))) (revel (GetField revel (Ref va))) (splice_ai (GetField splice_ai (Ref va))) (primate_ai (GetField primate_ai (Ref va))) (old_locus (GetField old_locus (Ref va))) (old_alleles (GetField old_alleles (Ref va)))))) (InsertFields (SelectFields (s) (SelectFields (s bam_metrics sample_qc gnomad_sex_imputation gnomad_population_inference gnomad_sample_qc_residuals gnomad_sample_filters gnomad_high_quality gnomad_release relatedness_inference hgdp_tgp_meta high_quality) (Ref sa))) None (__uid_28 (MakeStruct (s (GetField s (Ref sa))))))) (InsertFields (SelectFields () (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref global))) None)) (SelectFields (s __uid_28) (Ref sa)))) (InsertFields (SelectFields (__uid_28) (SelectFields (s __uid_28) (Ref row))) None))))) (GetField __uid_28 (Ref __uid_29)))) (GetTupleElement 0 (StreamFold __uid_35 __uid_36 (StreamZip 30 TakeMinLength (__uid_33 __uid_34) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __uid_32 (ToStream False (GetField rows (TableCollect (TableMapRows (MatrixColsTable (MatrixMapCols () (MatrixMapGlobals (MatrixMapCols None (MatrixMapRows (MatrixFilterRows (MatrixFilterRows (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Stru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False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt )) (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2)) (False))) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (Ref va)) None (a_index (I32 1)) (was_split (False)))) (InsertFields (SelectFields (s) (SelectFields (s bam_metrics sample_qc gnomad_sex_imputation gnomad_population_inference gnomad_sample_qc_residuals gnomad_sample_filters gnomad_high_quality gnomad_release relatedness_inference hgdp_tgp_meta high_quality) (Ref sa))) None (__uid_31 (MakeStruct (s (GetField s (Ref sa))))))) (InsertFields (SelectFields () (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref global))) None)) (SelectFields (s __uid_31) (Ref sa)))) (InsertFields (SelectFields (__uid_31) (SelectFields (s __uid_31) (Ref row))) None))))) (GetField __uid_31 (Ref __uid_32)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __uid_34) (Ref __uid_33))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __uid_35)) (ApplyUnaryPrimOp Bang (ApplyComparisonOp EQ (GetTupleElement 1 (Ref __uid_36)) (Ref __uid_30)))) (Ref __uid_36) (Ref __uid_35))))))) 2023-08-16 15:03:35.406 root: INFO: generated MatrixFilterIntervals node with 2 intervals: Intervals: [[chr1:97573863]-[chr1:97573863]], [[chr1:97579893]-[chr1:97579893]] Predicate: (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False)) Post: (Coalesce (True) (False)) 2023-08-16 15:03:35.415 root: INFO: generated MatrixFilterIntervals node with 2 intervals: Intervals: [[chr1:97573863]-[chr1:97573863]], [[chr1:97579893]-[chr1:97579893]] Predicate: (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False)) Post: (Coalesce (True) (False)) 2023-08-16 15:03:35.430 root: INFO: generated MatrixFilterIntervals node with 2 intervals: Intervals: [[chr1:97573863]-[chr1:97573863]], [[chr1:97579893]-[chr1:97579893]] Predicate: (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False)) Post: (Coalesce (True) (False)) 2023-08-16 15:03:35.708 root: INFO: Prune: InsertFields: eliminating field 'alleles' 2023-08-16 15:03:35.708 root: INFO: Prune: InsertFields: eliminating field 'was_split' 2023-08-16 15:03:35.708 root: INFO: Prune: InsertFields: eliminating field 'old_locus' 2023-08-16 15:03:35.712 root: INFO: Prune: InsertFields: eliminating field 'locus' 2023-08-16 15:03:35.712 root: INFO: Prune: InsertFields: eliminating field 'alleles' 2023-08-16 15:03:35.712 root: INFO: Prune: InsertFields: eliminating field 'was_split' 2023-08-16 15:03:35.712 root: INFO: Prune: InsertFields: eliminating field 'old_locus' 2023-08-16 15:03:35.713 root: INFO: Prune: InsertFields: eliminating field 'vep' 2023-08-16 15:03:35.715 root: INFO: Prune: InsertFields: eliminating field 'GT' 2023-08-16 15:03:35.715 root: INFO: Prune: InsertFields: eliminating field 'DP' 2023-08-16 15:03:35.715 root: INFO: Prune: InsertFields: eliminating field 'AD' 2023-08-16 15:03:35.715 root: INFO: Prune: InsertFields: eliminating field 'PL' 2023-08-16 15:03:35.715 root: INFO: Prune: InsertFields: eliminating field 'GQ' 2023-08-16 15:03:35.715 root: INFO: Prune: InsertFields: eliminating field 'PGT' 2023-08-16 15:03:35.715 root: INFO: Prune: InsertFields: eliminating field 'PID' 2023-08-16 15:03:35.715 root: INFO: Prune: MakeStruct: eliminating field 'locus' 2023-08-16 15:03:35.715 root: INFO: Prune: MakeStruct: eliminating field 'alleles' 2023-08-16 15:03:35.715 root: INFO: Prune: MakeStruct: eliminating field 'rsid' 2023-08-16 15:03:35.715 root: INFO: Prune: MakeStruct: eliminating field 'a_index' 2023-08-16 15:03:35.715 root: INFO: Prune: MakeStruct: eliminating field 'was_split' 2023-08-16 15:03:35.715 root: INFO: Prune: MakeStruct: eliminating field 'filters' 2023-08-16 15:03:35.715 root: INFO: Prune: MakeStruct: eliminating field 'info' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'vep' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'vqsr' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'region_flag' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'allele_info' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'hgdp_tgp_freq' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_freq' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_popmax' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_faf' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_raw_qual_hists' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_qual_hists' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_age_hist_het' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_age_hist_hom' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'cadd' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'revel' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'splice_ai' 2023-08-16 15:03:35.716 root: INFO: Prune: MakeStruct: eliminating field 'primate_ai' 2023-08-16 15:03:35.719 root: INFO: Prune: InsertFields: eliminating field 'a_index' 2023-08-16 15:03:35.719 root: INFO: Prune: InsertFields: eliminating field 'was_split' 2023-08-16 15:03:35.813 root: INFO: Prune: InsertFields: eliminating field 'locus' 2023-08-16 15:03:35.813 root: INFO: Prune: InsertFields: eliminating field 'a_index' 2023-08-16 15:03:35.813 root: INFO: Prune: InsertFields: eliminating field 'old_alleles' 2023-08-16 15:03:35.814 root: INFO: Prune: MakeStruct: eliminating field 'a_index' 2023-08-16 15:03:35.814 root: INFO: Prune: MakeStruct: eliminating field 'vep' 2023-08-16 15:03:35.814 root: INFO: Prune: MakeStruct: eliminating field 'old_alleles' 2023-08-16 15:03:35.815 root: INFO: Prune: InsertFields: eliminating field 'a_index' 2023-08-16 15:03:35.815 root: INFO: Prune: InsertFields: eliminating field 'old_alleles' 2023-08-16 15:03:35.882 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 241: (MakeTuple (0) (Let __iruid_234 (ToArray (StreamMap __iruid_235 (ToStream False (GetField rows (TableCollect (MatrixColsTable (MatrixMapCols () (MatrixMapRows (MatrixUnionRows (MatrixMapCols () (MatrixMapRows (MatrixKeyRowsBy () False (MatrixMapRows (MatrixKeyRowsBy () False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (MatrixRead Matrix{global:Struct{},col_key:[s],col:Struct{s:String},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String]},entry:Struct{}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt ))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2)) (False))) (Let __iruid_236 (GetField alleles (Ref va)) (Let __iruid_237 (GetField locus (Ref va)) (InsertFields (Ref va) None (__uid_3 (ArraySort __iruid_238 __iruid_239 (StreamFlatMap __iruid_240 (StreamFilter __iruid_241 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_236)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_236) (Ref __iruid_241)) (Str "*"))) (ToStream False (Let __iruid_242 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_237) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_236) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_236) (Ref __iruid_240)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_242)) (Ref __iruid_237)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_242))) (locus (GetField locus (Ref __iruid_242))) (a_index (Ref __iruid_240)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_238)) (False) (If (IsNA (Ref __iruid_239)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_238) (Ref __iruid_239)) (I32 0)))))))))))) (SelectFields () (Ref va)))) (If (IsNA (Ref va)) (NA Struct{}) (Literal Struct{} ))) (Ref sa)) (MatrixMapCols () (MatrixKeyRowsBy () False (MatrixMapRows (MatrixKeyRowsBy () False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (MatrixRead Matrix{global:Struct{},col_key:[s],col:Struct{s:String},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String]},entry:Struct{}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt ))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2)) (False))) (Let __iruid_245 (GetField alleles (Ref va)) (Let __iruid_246 (GetField locus (Ref va)) (InsertFields (Ref va) None (__uid_3 (ArraySort __iruid_247 __iruid_248 (StreamFlatMap __iruid_249 (StreamFilter __iruid_250 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_245)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_245) (Ref __iruid_250)) (Str "*"))) (ToStream False (Let __iruid_251 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_246) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_245) (I32 0)) (ApplyIR 14 indexArray () String (Ref __iruid_245) (Ref __iruid_249)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_251)) (Ref __iruid_246)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_251))) (locus (GetField locus (Ref __iruid_251))) (a_index (Ref __iruid_249)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_247)) (False) (If (IsNA (Ref __iruid_248)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_247) (Ref __iruid_248)) (I32 0)))))))))))) (SelectFields () (Ref va)))) (If (IsNA (Ref sa)) (NA Struct{}) (Literal Struct{} )))) (Literal Struct{} )) (InsertFields (SelectFields () (Ref sa)) None (__uid_28 (MakeStruct (s (GetField s (Ref sa))))))))))) (GetField __uid_28 (Ref __iruid_235)))) (GetTupleElement 0 (StreamFold __iruid_253 __iruid_254 (StreamZip 30 TakeMinLength (__iruid_255 __iruid_256) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __iruid_257 (ToStream False (GetField rows (TableCollect (MatrixColsTable (MatrixMapCols () (MatrixFilterRows (MatrixFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (MatrixRead Matrix{global:Struct{},col_key:[s],col:Struct{s:String},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String]},entry:Struct{}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt ))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref va))) (I32 2)) (False))) (InsertFields (SelectFields () (Ref sa)) None (__uid_31 (MakeStruct (s (GetField s (Ref sa))))))))))) (GetField __uid_31 (Ref __iruid_257)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __iruid_256) (Ref __iruid_255))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __iruid_253)) (ApplyComparisonOp NEQ (GetTupleElement 1 (Ref __iruid_254)) (Ref __iruid_234))) (Ref __iruid_254) (Ref __iruid_253)))))) 2023-08-16 15:03:36.068 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 428: (MakeTuple (0) (Let __iruid_234 (ToArray (StreamMap __iruid_235 (ToStream False (GetField rows (TableCollect (TableKeyBy () False (TableParallelize None (Let __cols_and_globals (TableGetGlobals (TableMapGlobals (TableMapRows (TableUnion (TableMapGlobals (TableMapRows (TableKeyBy () False (TableMapRows (TableKeyBy () False (TableExplode ("__uid_3") (TableMapRows (TableFilter (TableFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (TableMapGlobals (TableRead Table{global:Struct{},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries )) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))))))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles) (Ref row)))) (I32 2)) (False))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_276 (MakeStruct) (Let __iruid_236 (GetField alleles (SelectFields (locus alleles) (Ref row))) (Let __iruid_237 (GetField locus (SelectFields (locus alleles) (Ref row))) (InsertFields (SelectFields (locus alleles) (Ref row)) None (__uid_3 (ArraySort __iruid_238 __iruid_239 (StreamFlatMap __iruid_240 (StreamFilter __iruid_241 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_236)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_236) (Ref __iruid_241)) (Str "*"))) (ToStream False (Let __iruid_242 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_237) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_236) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_236) (Ref __iruid_240)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_242)) (Ref __iruid_237)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_242))) (locus (GetField locus (Ref __iruid_242))) (a_index (Ref __iruid_240)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles) (Ref row)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_238)) (False) (If (IsNA (Ref __iruid_239)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_238) (Ref __iruid_239)) (I32 0)))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_278 (MakeStruct) (SelectFields () (SelectFields (locus alleles __uid_3) (Ref row)))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_279 (MakeStruct) (If (IsNA (SelectFields () (Ref row))) (NA Struct{}) (Literal Struct{} ))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))) (InsertFields (Ref global) None (__cols (ToArray (StreamMap __iruid_280 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)))) (Let __cols_array (GetField __cols (Ref global)) (Let sa (ArrayRef -1 (Ref __cols_array) (Ref __iruid_280)) (Ref sa)))))))) (TableMapRows (TableMapGlobals (TableKeyBy () False (TableMapRows (TableKeyBy () False (TableExplode ("__uid_3") (TableMapRows (TableFilter (TableFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (TableMapGlobals (TableRead Table{global:Struct{},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries )) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))))))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles) (Ref row)))) (I32 2)) (False))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_281 (MakeStruct) (Let __iruid_245 (GetField alleles (SelectFields (locus alleles) (Ref row))) (Let __iruid_246 (GetField locus (SelectFields (locus alleles) (Ref row))) (InsertFields (SelectFields (locus alleles) (Ref row)) None (__uid_3 (ArraySort __iruid_247 __iruid_248 (StreamFlatMap __iruid_249 (StreamFilter __iruid_250 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_245)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_245) (Ref __iruid_250)) (Str "*"))) (ToStream False (Let __iruid_251 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_246) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_245) (I32 0)) (ApplyIR 14 indexArray () String (Ref __iruid_245) (Ref __iruid_249)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_251)) (Ref __iruid_246)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_251))) (locus (GetField locus (Ref __iruid_251))) (a_index (Ref __iruid_249)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles) (Ref row)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_247)) (False) (If (IsNA (Ref __iruid_248)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_247) (Ref __iruid_248)) (I32 0)))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_283 (MakeStruct) (SelectFields () (SelectFields (locus alleles __uid_3) (Ref row)))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) (InsertFields (Ref global) None (__cols (ToArray (StreamMap __iruid_284 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)))) (Let __cols_array (GetField __cols (Ref global)) (Let sa (ArrayRef -1 (Ref __cols_array) (Ref __iruid_284)) (If (IsNA (Ref sa)) (NA Struct{}) (Literal Struct{} ))))))))) (SelectFields ( `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_285 (MakeStruct) (Literal Struct{} )) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))) (InsertFields (Ref global) None (__cols (ToArray (StreamMap __iruid_286 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)))) (Let __cols_array (GetField __cols (Ref global)) (Let sa (ArrayRef -1 (Ref __cols_array) (Ref __iruid_286)) (InsertFields (SelectFields () (Ref sa)) None (__uid_28 (MakeStruct (s (GetField s (Ref sa)))))))))))))) (MakeStruct (rows (GetField __cols (Ref __cols_and_globals))) (global (SelectFields () (Ref __cols_and_globals)))))))))) (GetField __uid_28 (Ref __iruid_235)))) (GetTupleElement 0 (StreamFold __iruid_253 __iruid_254 (StreamZip 30 TakeMinLength (__iruid_255 __iruid_256) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __iruid_257 (ToStream False (GetField rows (TableCollect (TableKeyBy () False (TableParallelize None (Let __cols_and_globals (TableGetGlobals (TableMapGlobals (TableFilter (TableFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (TableMapGlobals (TableRead Table{global:Struct{},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries )) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))))))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (SelectFields (locus alleles) (Ref row)))) (I32 2)) (False))) (InsertFields (Ref global) None (__cols (ToArray (StreamMap __iruid_287 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)))) (Let __cols_array (GetField __cols (Ref global)) (Let sa (ArrayRef -1 (Ref __cols_array) (Ref __iruid_287)) (InsertFields (SelectFields () (Ref sa)) None (__uid_31 (MakeStruct (s (GetField s (Ref sa)))))))))))))) (MakeStruct (rows (GetField __cols (Ref __cols_and_globals))) (global (SelectFields () (Ref __cols_and_globals)))))))))) (GetField __uid_31 (Ref __iruid_257)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __iruid_256) (Ref __iruid_255))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __iruid_253)) (ApplyComparisonOp NEQ (GetTupleElement 1 (Ref __iruid_254)) (Ref __iruid_234))) (Ref __iruid_254) (Ref __iruid_253)))))) 2023-08-16 15:03:36.194 root: INFO: Prune: MakeStruct: eliminating field 'global' 2023-08-16 15:03:36.195 root: INFO: Prune: MakeStruct: eliminating field 'global' 2023-08-16 15:03:36.238 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 91: (MakeTuple (0) (Let __iruid_386 (ToArray (StreamMap __iruid_387 (ToStream False (GetField rows (Let __iruid_388 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_389 (ToArray (StreamMap __iruid_390 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_388)) (I32 1)) (ArrayRef -1 (Ref __iruid_388) (Ref __iruid_390)))) (MakeStruct (rows (ToArray (StreamMap __iruid_391 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_389)) (I32 1)) (Let __iruid_392 (ArrayRef -1 (Ref __iruid_389) (Ref __iruid_391)) (InsertFields (SelectFields () (Ref __iruid_392)) None (__uid_28 (MakeStruct (s (GetField s (Ref __iruid_392))))))))))))))) (GetField __uid_28 (Ref __iruid_387)))) (GetTupleElement 0 (StreamFold __iruid_393 __iruid_394 (StreamZip 30 TakeMinLength (__iruid_395 __iruid_396) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __iruid_397 (ToStream False (GetField rows (Let __iruid_398 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (MakeStruct (rows (ToArray (StreamMap __iruid_399 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_398)) (I32 1)) (Let __iruid_400 (ArrayRef -1 (Ref __iruid_398) (Ref __iruid_399)) (InsertFields (SelectFields () (Ref __iruid_400)) None (__uid_31 (MakeStruct (s (GetField s (Ref __iruid_400)))))))))))))) (GetField __uid_31 (Ref __iruid_397)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __iruid_396) (Ref __iruid_395))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __iruid_393)) (ApplyComparisonOp NEQ (GetTupleElement 1 (Ref __iruid_394)) (Ref __iruid_386))) (Ref __iruid_394) (Ref __iruid_393)))))) 2023-08-16 15:03:36.262 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 91: (MakeTuple (0) (Let __iruid_386 (ToArray (StreamMap __iruid_387 (ToStream False (GetField rows (Let __iruid_388 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_389 (ToArray (StreamMap __iruid_390 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_388)) (I32 1)) (ArrayRef -1 (Ref __iruid_388) (Ref __iruid_390)))) (MakeStruct (rows (ToArray (StreamMap __iruid_391 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_389)) (I32 1)) (Let __iruid_392 (ArrayRef -1 (Ref __iruid_389) (Ref __iruid_391)) (InsertFields (SelectFields () (Ref __iruid_392)) None (__uid_28 (MakeStruct (s (GetField s (Ref __iruid_392))))))))))))))) (GetField __uid_28 (Ref __iruid_387)))) (GetTupleElement 0 (StreamFold __iruid_393 __iruid_394 (StreamZip 30 TakeMinLength (__iruid_395 __iruid_396) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __iruid_397 (ToStream False (GetField rows (Let __iruid_398 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (MakeStruct (rows (ToArray (StreamMap __iruid_399 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_398)) (I32 1)) (Let __iruid_400 (ArrayRef -1 (Ref __iruid_398) (Ref __iruid_399)) (InsertFields (SelectFields () (Ref __iruid_400)) None (__uid_31 (MakeStruct (s (GetField s (Ref __iruid_400)))))))))))))) (GetField __uid_31 (Ref __iruid_397)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __iruid_396) (Ref __iruid_395))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __iruid_393)) (ApplyComparisonOp NEQ (GetTupleElement 1 (Ref __iruid_394)) (Ref __iruid_386))) (Ref __iruid_394) (Ref __iruid_393)))))) 2023-08-16 15:03:36.311 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 91: (MakeTuple (0) (Let __iruid_431 (ToArray (StreamMap __iruid_432 (ToStream False (GetField rows (Let __iruid_433 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_434 (ToArray (StreamMap __iruid_435 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_433)) (I32 1)) (ArrayRef -1 (Ref __iruid_433) (Ref __iruid_435)))) (MakeStruct (rows (ToArray (StreamMap __iruid_436 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_434)) (I32 1)) (Let __iruid_437 (ArrayRef -1 (Ref __iruid_434) (Ref __iruid_436)) (InsertFields (SelectFields () (Ref __iruid_437)) None (__uid_28 (MakeStruct (s (GetField s (Ref __iruid_437))))))))))))))) (GetField __uid_28 (Ref __iruid_432)))) (GetTupleElement 0 (StreamFold __iruid_438 __iruid_439 (StreamZip 30 TakeMinLength (__iruid_440 __iruid_441) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __iruid_442 (ToStream False (GetField rows (Let __iruid_443 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (MakeStruct (rows (ToArray (StreamMap __iruid_444 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_443)) (I32 1)) (Let __iruid_445 (ArrayRef -1 (Ref __iruid_443) (Ref __iruid_444)) (InsertFields (SelectFields () (Ref __iruid_445)) None (__uid_31 (MakeStruct (s (GetField s (Ref __iruid_445)))))))))))))) (GetField __uid_31 (Ref __iruid_442)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __iruid_441) (Ref __iruid_440))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __iruid_438)) (ApplyComparisonOp NEQ (GetTupleElement 1 (Ref __iruid_439)) (Ref __iruid_431))) (Ref __iruid_439) (Ref __iruid_438)))))) 2023-08-16 15:03:36.335 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 92: (MakeTuple (0) (MakeTuple (0) (Let __iruid_431 (ToArray (StreamMap __iruid_432 (ToStream False (GetField rows (Let __iruid_433 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_434 (ToArray (StreamMap __iruid_435 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_433)) (I32 1)) (ArrayRef -1 (Ref __iruid_433) (Ref __iruid_435)))) (MakeStruct (rows (ToArray (StreamMap __iruid_436 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_434)) (I32 1)) (Let __iruid_437 (ArrayRef -1 (Ref __iruid_434) (Ref __iruid_436)) (InsertFields (SelectFields () (Ref __iruid_437)) None (__uid_28 (MakeStruct (s (GetField s (Ref __iruid_437))))))))))))))) (GetField __uid_28 (Ref __iruid_432)))) (GetTupleElement 0 (StreamFold __iruid_438 __iruid_439 (StreamZip 30 TakeMinLength (__iruid_440 __iruid_441) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __iruid_442 (ToStream False (GetField rows (Let __iruid_443 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (MakeStruct (rows (ToArray (StreamMap __iruid_444 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_443)) (I32 1)) (Let __iruid_445 (ArrayRef -1 (Ref __iruid_443) (Ref __iruid_444)) (InsertFields (SelectFields () (Ref __iruid_445)) None (__uid_31 (MakeStruct (s (GetField s (Ref __iruid_445)))))))))))))) (GetField __uid_31 (Ref __iruid_442)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __iruid_441) (Ref __iruid_440))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __iruid_438)) (ApplyComparisonOp NEQ (GetTupleElement 1 (Ref __iruid_439)) (Ref __iruid_431))) (Ref __iruid_439) (Ref __iruid_438))))))) 2023-08-16 15:03:36.372 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 92: (MakeTuple (0) (MakeTuple (0) (Let __iruid_476 (ToArray (StreamMap __iruid_477 (ToStream False (GetField rows (Let __iruid_478 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_479 (ToArray (StreamMap __iruid_480 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_478)) (I32 1)) (ArrayRef -1 (Ref __iruid_478) (Ref __iruid_480)))) (MakeStruct (rows (ToArray (StreamMap __iruid_481 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_479)) (I32 1)) (Let __iruid_482 (ArrayRef -1 (Ref __iruid_479) (Ref __iruid_481)) (InsertFields (SelectFields () (Ref __iruid_482)) None (__uid_28 (MakeStruct (s (GetField s (Ref __iruid_482))))))))))))))) (GetField __uid_28 (Ref __iruid_477)))) (GetTupleElement 0 (StreamFold __iruid_483 __iruid_484 (StreamZip 30 TakeMinLength (__iruid_485 __iruid_486) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __iruid_487 (ToStream False (GetField rows (Let __iruid_488 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (MakeStruct (rows (ToArray (StreamMap __iruid_489 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_488)) (I32 1)) (Let __iruid_490 (ArrayRef -1 (Ref __iruid_488) (Ref __iruid_489)) (InsertFields (SelectFields () (Ref __iruid_490)) None (__uid_31 (MakeStruct (s (GetField s (Ref __iruid_490)))))))))))))) (GetField __uid_31 (Ref __iruid_487)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __iruid_486) (Ref __iruid_485))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __iruid_483)) (ApplyComparisonOp NEQ (GetTupleElement 1 (Ref __iruid_484)) (Ref __iruid_476))) (Ref __iruid_484) (Ref __iruid_483))))))) 2023-08-16 15:03:36.380 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 92: (MakeTuple (0) (MakeTuple (0) (Let __iruid_476 (ToArray (StreamMap __iruid_477 (ToStream False (GetField rows (Let __iruid_478 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_479 (ToArray (StreamMap __iruid_480 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_478)) (I32 1)) (ArrayRef -1 (Ref __iruid_478) (Ref __iruid_480)))) (MakeStruct (rows (ToArray (StreamMap __iruid_481 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_479)) (I32 1)) (Let __iruid_482 (ArrayRef -1 (Ref __iruid_479) (Ref __iruid_481)) (InsertFields (SelectFields () (Ref __iruid_482)) None (__uid_28 (MakeStruct (s (GetField s (Ref __iruid_482))))))))))))))) (GetField __uid_28 (Ref __iruid_477)))) (GetTupleElement 0 (StreamFold __iruid_483 __iruid_484 (StreamZip 30 TakeMinLength (__iruid_485 __iruid_486) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __iruid_487 (ToStream False (GetField rows (Let __iruid_488 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (MakeStruct (rows (ToArray (StreamMap __iruid_489 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_488)) (I32 1)) (Let __iruid_490 (ArrayRef -1 (Ref __iruid_488) (Ref __iruid_489)) (InsertFields (SelectFields () (Ref __iruid_490)) None (__uid_31 (MakeStruct (s (GetField s (Ref __iruid_490)))))))))))))) (GetField __uid_31 (Ref __iruid_487)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __iruid_486) (Ref __iruid_485))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __iruid_483)) (ApplyComparisonOp NEQ (GetTupleElement 1 (Ref __iruid_484)) (Ref __iruid_476))) (Ref __iruid_484) (Ref __iruid_483))))))) 2023-08-16 15:03:36.415 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 92: (MakeTuple (0) (MakeTuple (0) (Let __iruid_521 (ToArray (StreamMap __iruid_522 (ToStream False (GetField rows (Let __iruid_523 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_524 (ToArray (StreamMap __iruid_525 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_523)) (I32 1)) (ArrayRef -1 (Ref __iruid_523) (Ref __iruid_525)))) (MakeStruct (rows (ToArray (StreamMap __iruid_526 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_524)) (I32 1)) (Let __iruid_527 (ArrayRef -1 (Ref __iruid_524) (Ref __iruid_526)) (InsertFields (SelectFields () (Ref __iruid_527)) None (__uid_28 (MakeStruct (s (GetField s (Ref __iruid_527))))))))))))))) (GetField __uid_28 (Ref __iruid_522)))) (GetTupleElement 0 (StreamFold __iruid_528 __iruid_529 (StreamZip 30 TakeMinLength (__iruid_530 __iruid_531) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __iruid_532 (ToStream False (GetField rows (Let __iruid_533 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (MakeStruct (rows (ToArray (StreamMap __iruid_534 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_533)) (I32 1)) (Let __iruid_535 (ArrayRef -1 (Ref __iruid_533) (Ref __iruid_534)) (InsertFields (SelectFields () (Ref __iruid_535)) None (__uid_31 (MakeStruct (s (GetField s (Ref __iruid_535)))))))))))))) (GetField __uid_31 (Ref __iruid_532)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __iruid_531) (Ref __iruid_530))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __iruid_528)) (ApplyComparisonOp NEQ (GetTupleElement 1 (Ref __iruid_529)) (Ref __iruid_521))) (Ref __iruid_529) (Ref __iruid_528))))))) 2023-08-16 15:03:36.532 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 92: (MakeTuple (0) (MakeTuple (0) (Let __iruid_521 (ToArray (StreamMap __iruid_522 (ToStream False (GetField rows (Let __iruid_523 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_524 (ToArray (StreamMap __iruid_525 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_523)) (I32 1)) (ArrayRef -1 (Ref __iruid_523) (Ref __iruid_525)))) (MakeStruct (rows (ToArray (StreamMap __iruid_526 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_524)) (I32 1)) (Let __iruid_527 (ArrayRef -1 (Ref __iruid_524) (Ref __iruid_526)) (InsertFields (SelectFields () (Ref __iruid_527)) None (__uid_28 (MakeStruct (s (GetField s (Ref __iruid_527))))))))))))))) (GetField __uid_28 (Ref __iruid_522)))) (GetTupleElement 0 (StreamFold __iruid_528 __iruid_529 (StreamZip 30 TakeMinLength (__iruid_530 __iruid_531) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __iruid_532 (ToStream False (GetField rows (Let __iruid_533 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (MakeStruct (rows (ToArray (StreamMap __iruid_534 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_533)) (I32 1)) (Let __iruid_535 (ArrayRef -1 (Ref __iruid_533) (Ref __iruid_534)) (InsertFields (SelectFields () (Ref __iruid_535)) None (__uid_31 (MakeStruct (s (GetField s (Ref __iruid_535)))))))))))))) (GetField __uid_31 (Ref __iruid_532)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __iruid_531) (Ref __iruid_530))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __iruid_528)) (ApplyComparisonOp NEQ (GetTupleElement 1 (Ref __iruid_529)) (Ref __iruid_521))) (Ref __iruid_529) (Ref __iruid_528))))))) 2023-08-16 15:03:36.571 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 92: (MakeTuple (0) (MakeTuple (0) (Let __iruid_566 (ToArray (StreamMap __iruid_567 (ToStream False (GetField rows (Let __iruid_568 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_569 (ToArray (StreamMap __iruid_570 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_568)) (I32 1)) (ArrayRef -1 (Ref __iruid_568) (Ref __iruid_570)))) (MakeStruct (rows (ToArray (StreamMap __iruid_571 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_569)) (I32 1)) (Let __iruid_572 (ArrayRef -1 (Ref __iruid_569) (Ref __iruid_571)) (InsertFields (SelectFields () (Ref __iruid_572)) None (__uid_28 (MakeStruct (s (GetField s (Ref __iruid_572))))))))))))))) (GetField __uid_28 (Ref __iruid_567)))) (GetTupleElement 0 (StreamFold __iruid_573 __iruid_574 (StreamZip 30 TakeMinLength (__iruid_575 __iruid_576) (ToStream False (MakeArray Array[Array[Struct{s:String}]] (ToArray (StreamMap __iruid_577 (ToStream False (GetField rows (Let __iruid_578 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (MakeStruct (rows (ToArray (StreamMap __iruid_579 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_578)) (I32 1)) (Let __iruid_580 (ArrayRef -1 (Ref __iruid_578) (Ref __iruid_579)) (InsertFields (SelectFields () (Ref __iruid_580)) None (__uid_31 (MakeStruct (s (GetField s (Ref __iruid_580)))))))))))))) (GetField __uid_31 (Ref __iruid_577)))))) (StreamIota False (I32 0) (I32 1)) (MakeTuple (0 1) (Ref __iruid_576) (Ref __iruid_575))) (NA Tuple[Int32,Array[Struct{s:String}]]) (If (ApplySpecial 31 land () Boolean (IsNA (Ref __iruid_573)) (ApplyComparisonOp NEQ (GetTupleElement 1 (Ref __iruid_574)) (Ref __iruid_566))) (Ref __iruid_574) (Ref __iruid_573))))))) 2023-08-16 15:03:36.993 root: INFO: encoder cache miss (0 hits, 1 misses, 0.000) 2023-08-16 15:03:37.056 root: INFO: instruction count: 3: __C162HailClassLoaderContainer. 2023-08-16 15:03:37.056 root: INFO: instruction count: 3: __C162HailClassLoaderContainer. 2023-08-16 15:03:37.059 root: INFO: instruction count: 3: __C163FSContainer. 2023-08-16 15:03:37.059 root: INFO: instruction count: 3: __C163FSContainer. 2023-08-16 15:03:37.065 root: INFO: instruction count: 3: __C164etypeEncode. 2023-08-16 15:03:37.065 root: INFO: instruction count: 7: __C164etypeEncode.apply 2023-08-16 15:03:37.065 root: INFO: instruction count: 9: __C164etypeEncode.__m165ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_int64ANDr_binaryENDEND 2023-08-16 15:03:37.066 root: INFO: instruction count: 25: __C164etypeEncode.__m166ENCODE_SBaseStructPointer_TO_r_struct_of_r_int64ANDr_binaryEND 2023-08-16 15:03:37.066 root: INFO: instruction count: 4: __C164etypeEncode.__m167ENCODE_SInt64$_TO_r_int64 2023-08-16 15:03:37.066 root: INFO: instruction count: 16: __C164etypeEncode.__m168ENCODE_SStringPointer_TO_r_binary 2023-08-16 15:03:37.078 MemoryStore: INFO: Block broadcast_1 stored as values in memory (estimated size 232.0 B, free 22.0 GiB) 2023-08-16 15:03:37.080 MemoryStore: INFO: Block broadcast_1_piece0 stored as bytes in memory (estimated size 177.0 B, free 22.0 GiB) 2023-08-16 15:03:37.080 BlockManagerInfo: INFO: Added broadcast_1_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 177.0 B, free: 22.0 GiB) 2023-08-16 15:03:37.082 SparkContext: INFO: Created broadcast 1 from broadcast at SparkBackend.scala:342 2023-08-16 15:03:37.083 root: INFO: instruction count: 3: __C1HailClassLoaderContainer. 2023-08-16 15:03:37.084 root: INFO: instruction count: 3: __C1HailClassLoaderContainer. 2023-08-16 15:03:37.084 root: INFO: instruction count: 3: __C2FSContainer. 2023-08-16 15:03:37.085 root: INFO: instruction count: 3: __C2FSContainer. 2023-08-16 15:03:37.140 root: INFO: instruction count: 3: __C3Compiled. 2023-08-16 15:03:37.141 root: INFO: instruction count: 93: __C3Compiled.apply 2023-08-16 15:03:37.142 root: INFO: instruction count: 190: __C3Compiled.__m4split_ToArray 2023-08-16 15:03:37.145 root: INFO: instruction count: 332: __C3Compiled.__m6split_ToArray 2023-08-16 15:03:37.146 root: INFO: instruction count: 192: __C3Compiled.__m14DECODE_r_struct_of_r_binaryANDo_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_int64ANDr_int64ANDr_int64ANDr_int64ANDo_int64ANDr_int64ANDo_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_float32ANDo_float32ANDo_float32ANDo_float32ANDo_float32ANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_int64ANDo_float64ANDo_int64ENDANDo_struct_of_o_array_of_o_float64ANDo_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_array_of_r_binaryANDo_boolANDo_boolANDo_array_of_o_binaryENDANDo_boolANDo_boolANDo_struct_of_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDr_boolENDANDo_struct_of_o_binaryANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_float64ANDo_struct_of_o_binaryANDo_binaryENDANDo_array_of_o_float64ANDr_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolENDANDo_binaryENDANDo_boolEND_TO_SBaseStructPointer 2023-08-16 15:03:37.147 root: INFO: instruction count: 31: __C3Compiled.__m15INPLACE_DECODE_r_binary_TO_r_string 2023-08-16 15:03:37.148 root: INFO: instruction count: 125: __C3Compiled.__m16SKIP_o_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:37.148 root: INFO: instruction count: 3: __C3Compiled.__m17SKIP_o_float64 2023-08-16 15:03:37.149 root: INFO: instruction count: 141: __C3Compiled.__m18SKIP_o_struct_of_o_int64ANDr_int64ANDr_int64ANDr_int64ANDo_int64ANDr_int64ANDo_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:37.149 root: INFO: instruction count: 3: __C3Compiled.__m19SKIP_o_int64 2023-08-16 15:03:37.149 root: INFO: instruction count: 3: __C3Compiled.__m20SKIP_r_int64 2023-08-16 15:03:37.151 root: INFO: instruction count: 186: __C3Compiled.__m21SKIP_o_struct_of_o_float32ANDo_float32ANDo_float32ANDo_float32ANDo_float32ANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_int64ANDo_float64ANDo_int64END 2023-08-16 15:03:37.151 root: INFO: instruction count: 3: __C3Compiled.__m22SKIP_o_float32 2023-08-16 15:03:37.151 root: INFO: instruction count: 7: __C3Compiled.__m23SKIP_o_binary 2023-08-16 15:03:37.152 root: INFO: instruction count: 186: __C3Compiled.__m24SKIP_o_struct_of_o_array_of_o_float64ANDo_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:37.153 root: INFO: instruction count: 51: __C3Compiled.__m25SKIP_o_array_of_o_float64 2023-08-16 15:03:37.154 root: INFO: instruction count: 125: __C3Compiled.__m26SKIP_o_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:37.155 root: INFO: instruction count: 73: __C3Compiled.__m27SKIP_o_struct_of_o_array_of_r_binaryANDo_boolANDo_boolANDo_array_of_o_binaryEND 2023-08-16 15:03:37.155 root: INFO: instruction count: 22: __C3Compiled.__m28SKIP_o_array_of_r_binary 2023-08-16 15:03:37.155 root: INFO: instruction count: 7: __C3Compiled.__m29SKIP_r_binary 2023-08-16 15:03:37.155 root: INFO: instruction count: 3: __C3Compiled.__m30SKIP_o_bool 2023-08-16 15:03:37.156 root: INFO: instruction count: 51: __C3Compiled.__m31SKIP_o_array_of_o_binary 2023-08-16 15:03:37.156 root: INFO: instruction count: 16: __C3Compiled.__m32SKIP_o_struct_of_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDr_boolEND 2023-08-16 15:03:37.156 root: INFO: instruction count: 22: __C3Compiled.__m33SKIP_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:37.157 root: INFO: instruction count: 86: __C3Compiled.__m34SKIP_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:37.157 root: INFO: instruction count: 3: __C3Compiled.__m35SKIP_r_bool 2023-08-16 15:03:37.158 root: INFO: instruction count: 151: __C3Compiled.__m36SKIP_o_struct_of_o_binaryANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_float64ANDo_struct_of_o_binaryANDo_binaryENDANDo_array_of_o_float64ANDr_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolENDANDo_binaryEND 2023-08-16 15:03:37.158 root: INFO: instruction count: 47: __C3Compiled.__m37SKIP_o_struct_of_o_binaryANDo_binaryEND 2023-08-16 15:03:37.159 root: INFO: instruction count: 60: __C3Compiled.__m38SKIP_r_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolEND 2023-08-16 15:03:37.159 root: INFO: instruction count: 12: __C3Compiled.__m41setup_jab 2023-08-16 15:03:37.160 root: INFO: instruction count: 189: __C3Compiled.__m49split_ToArray 2023-08-16 15:03:37.160 root: INFO: instruction count: 35: __C3Compiled.__m56arrayref_bounds_check 2023-08-16 15:03:37.161 root: INFO: instruction count: 210: __C3Compiled.__m63split_ToArray 2023-08-16 15:03:37.163 root: INFO: instruction count: 322: __C3Compiled.__m86split_StreamFold 2023-08-16 15:03:37.163 root: INFO: instruction count: 172: __C3Compiled.__m88split_ToArray 2023-08-16 15:03:37.165 root: INFO: instruction count: 332: __C3Compiled.__m90split_ToArray 2023-08-16 15:03:37.165 root: INFO: instruction count: 12: __C3Compiled.__m99setup_jab 2023-08-16 15:03:37.166 root: INFO: instruction count: 210: __C3Compiled.__m107split_ToArray 2023-08-16 15:03:37.166 root: INFO: instruction count: 15: __C3Compiled.__m146ord_equiv 2023-08-16 15:03:37.166 root: INFO: instruction count: 73: __C3Compiled.__m147ord_equivNonnull 2023-08-16 15:03:37.167 root: INFO: instruction count: 11: __C3Compiled.__m148ord_equiv 2023-08-16 15:03:37.167 root: INFO: instruction count: 39: __C3Compiled.__m149ord_equivNonnull 2023-08-16 15:03:37.167 root: INFO: instruction count: 11: __C3Compiled.__m150ord_equiv 2023-08-16 15:03:37.167 root: INFO: instruction count: 21: __C3Compiled.__m151ord_equivNonnull 2023-08-16 15:03:37.167 root: INFO: instruction count: 9: __C3Compiled.__m152ord_compareNonnull 2023-08-16 15:03:37.168 root: INFO: instruction count: 89: __C3Compiled.__m153ord_compareNonnull 2023-08-16 15:03:37.168 root: INFO: instruction count: 9: __C3Compiled.setPartitionIndex 2023-08-16 15:03:37.168 root: INFO: instruction count: 4: __C3Compiled.addPartitionRegion 2023-08-16 15:03:37.168 root: INFO: instruction count: 4: __C3Compiled.setPool 2023-08-16 15:03:37.169 root: INFO: instruction count: 3: __C3Compiled.addHailClassLoader 2023-08-16 15:03:37.169 root: INFO: instruction count: 3: __C3Compiled.addFS 2023-08-16 15:03:37.169 root: INFO: instruction count: 35: __C3Compiled.addLiterals 2023-08-16 15:03:37.169 root: INFO: instruction count: 27: __C3Compiled.__m159DECODE_r_struct_of_r_struct_of_r_int64ANDr_binaryENDEND_TO_SBaseStructPointer 2023-08-16 15:03:37.169 root: INFO: instruction count: 26: __C3Compiled.__m160INPLACE_DECODE_r_struct_of_r_int64ANDr_binaryEND_TO_r_struct_of_r_int64ANDr_stringEND 2023-08-16 15:03:37.170 root: INFO: instruction count: 10: __C3Compiled.__m161INPLACE_DECODE_r_int64_TO_r_int64 2023-08-16 15:03:37.459 root: INFO: RegionPool: REPORT_THRESHOLD: 256.0K allocated (192.0K blocks / 64.0K chunks), regions.size = 2, 0 current java objects, thread 16: Thread-4 2023-08-16 15:03:37.548 root: INFO: RegionPool: REPORT_THRESHOLD: 512.0K allocated (192.0K blocks / 320.0K chunks), regions.size = 2, 0 current java objects, thread 16: Thread-4 2023-08-16 15:03:37.594 root: INFO: encoder cache miss (0 hits, 2 misses, 0.000) 2023-08-16 15:03:37.596 root: INFO: instruction count: 3: __C169HailClassLoaderContainer. 2023-08-16 15:03:37.596 root: INFO: instruction count: 3: __C169HailClassLoaderContainer. 2023-08-16 15:03:37.596 root: INFO: instruction count: 3: __C170FSContainer. 2023-08-16 15:03:37.596 root: INFO: instruction count: 3: __C170FSContainer. 2023-08-16 15:03:37.597 root: INFO: instruction count: 3: __C171etypeEncode. 2023-08-16 15:03:37.597 root: INFO: instruction count: 7: __C171etypeEncode.apply 2023-08-16 15:03:37.598 root: INFO: instruction count: 36: __C171etypeEncode.__m172ENCODE_SBaseStructPointer_TO_o_struct_of_o_int32END 2023-08-16 15:03:37.598 root: INFO: instruction count: 4: __C171etypeEncode.__m173ENCODE_SInt32$_TO_o_int32 2023-08-16 15:03:37.601 root: INFO: finished execution of query hail_query_1, result size is 1.00 B 2023-08-16 15:03:37.602 root: INFO: RegionPool: FREE: 704.0K allocated (320.0K blocks / 384.0K chunks), regions.size = 2, 0 current java objects, thread 16: Thread-4 2023-08-16 15:03:37.603 root: INFO: timing SparkBackend.executeEncode total 2.665s self 119.443ms children 2.546s %children 95.52% 2023-08-16 15:03:37.603 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR total 859.081ms self 1.332ms children 857.749ms %children 99.84% 2023-08-16 15:03:37.603 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/Verify total 2.266ms self 2.266ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.603 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation total 855.270ms self 331.747ms children 523.523ms %children 61.21% 2023-08-16 15:03:37.603 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize total 523.523ms self 10.199ms children 513.324ms %children 98.05% 2023-08-16 15:03:37.603 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 20.803ms self 20.803ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.604 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 58.717ms self 58.717ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.604 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 37.236ms self 37.236ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.604 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 67.899ms self 67.899ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.604 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 79.249ms self 79.249ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.604 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 6.505ms self 6.505ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.604 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 95.832ms self 95.832ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.604 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 17.919ms self 17.919ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.604 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 2.798ms self 2.798ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.604 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 8.245ms self 8.245ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.605 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 17.935ms self 17.935ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.605 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 26.226ms self 26.226ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.605 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 1.568ms self 1.568ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.605 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 21.902ms self 21.902ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.605 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 2.519ms self 2.519ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.605 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 1.606ms self 1.606ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.605 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 4.401ms self 4.401ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.605 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 6.802ms self 6.802ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.605 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 16.498ms self 16.498ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.606 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.488ms self 0.488ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.606 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 18.175ms self 18.175ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.606 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/Verify total 0.213ms self 0.213ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.606 root: INFO: timing SparkBackend.executeEncode/LowerMatrixToTable total 101.205ms self 0.031ms children 101.174ms %children 99.97% 2023-08-16 15:03:37.606 root: INFO: timing SparkBackend.executeEncode/LowerMatrixToTable/Verify total 0.108ms self 0.108ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.606 root: INFO: timing SparkBackend.executeEncode/LowerMatrixToTable/LoweringTransformation total 99.969ms self 99.969ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.606 root: INFO: timing SparkBackend.executeEncode/LowerMatrixToTable/Verify total 1.096ms self 1.096ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.606 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable total 241.209ms self 0.029ms children 241.180ms %children 99.99% 2023-08-16 15:03:37.606 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.165ms self 0.165ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.606 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation total 240.959ms self 80.116ms children 160.843ms %children 66.75% 2023-08-16 15:03:37.606 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize total 160.843ms self 0.369ms children 160.474ms %children 99.77% 2023-08-16 15:03:37.607 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 7.321ms self 7.321ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.607 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 5.549ms self 5.549ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.607 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/NormalizeNames total 9.698ms self 9.698ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.607 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 85.755ms self 85.755ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.607 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 8.997ms self 8.997ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.607 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 1.860ms self 1.860ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.607 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 8.014ms self 8.014ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.607 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 1.028ms self 1.028ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.607 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.778ms self 0.778ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.607 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/NormalizeNames total 1.968ms self 1.968ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.607 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 1.076ms self 1.076ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.608 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 8.465ms self 8.465ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.608 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.366ms self 0.366ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.608 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 5.245ms self 5.245ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.608 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.893ms self 0.893ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.608 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.640ms self 0.640ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.608 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/NormalizeNames total 1.563ms self 1.563ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.608 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.977ms self 0.977ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.608 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 5.571ms self 5.571ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.608 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.299ms self 0.299ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.608 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 4.410ms self 4.410ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.608 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.056ms self 0.056ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/LiftRelationalValuesToRelationalLets total 3.557ms self 0.024ms children 3.534ms %children 99.33% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/LiftRelationalValuesToRelationalLets/Verify total 0.069ms self 0.069ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/LiftRelationalValuesToRelationalLets/LoweringTransformation total 3.409ms self 3.409ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/LiftRelationalValuesToRelationalLets/Verify total 0.056ms self 0.056ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/LowerOrInterpretNonCompilable total 7.980ms self 0.027ms children 7.954ms %children 99.67% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/LowerOrInterpretNonCompilable/Verify total 0.052ms self 0.052ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/LowerOrInterpretNonCompilable/LoweringTransformation total 7.363ms self 7.363ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/LowerOrInterpretNonCompilable/Verify total 0.539ms self 0.539ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable total 57.262ms self 0.027ms children 57.235ms %children 99.95% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.042ms self 0.042ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation total 57.141ms self 15.236ms children 41.905ms %children 73.34% 2023-08-16 15:03:37.609 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize total 41.905ms self 0.219ms children 41.686ms %children 99.48% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.515ms self 0.515ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.771ms self 0.771ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/NormalizeNames total 1.699ms self 1.699ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.954ms self 0.954ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 6.321ms self 6.321ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.302ms self 0.302ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 4.658ms self 4.658ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.837ms self 0.837ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.661ms self 0.661ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/NormalizeNames total 1.478ms self 1.478ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.955ms self 0.955ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 4.333ms self 4.333ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.610 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.299ms self 0.299ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 3.902ms self 3.902ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.835ms self 0.835ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.538ms self 0.538ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/NormalizeNames total 1.592ms self 1.592ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.868ms self 0.868ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 5.935ms self 5.935ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.298ms self 0.298ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 3.933ms self 3.933ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.051ms self 0.051ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/Compile total 857.899ms self 606.377ms children 251.522ms %children 29.32% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR total 46.076ms self 0.028ms children 46.048ms %children 99.94% 2023-08-16 15:03:37.611 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/Verify total 0.069ms self 0.069ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation total 45.927ms self 13.816ms children 32.110ms %children 69.92% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize total 32.110ms self 0.196ms children 31.915ms %children 99.39% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.569ms self 0.569ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.732ms self 0.732ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 1.534ms self 1.534ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 1.113ms self 1.113ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 5.494ms self 5.494ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.308ms self 0.308ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 3.560ms self 3.560ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.600ms self 0.600ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.385ms self 0.385ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 0.948ms self 0.948ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.654ms self 0.654ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.612 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 4.079ms self 4.079ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.252ms self 0.252ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 2.790ms self 2.790ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.719ms self 0.719ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.469ms self 0.469ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 1.126ms self 1.126ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.706ms self 0.706ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 2.889ms self 2.889ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.224ms self 0.224ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 2.763ms self 2.763ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/Verify total 0.053ms self 0.053ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/InlineApplyIR total 1.170ms self 0.020ms children 1.150ms %children 98.31% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/InlineApplyIR/Verify total 0.101ms self 0.101ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/InlineApplyIR/LoweringTransformation total 0.920ms self 0.920ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/InlineApplyIR/Verify total 0.129ms self 0.129ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.613 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR total 40.306ms self 0.024ms children 40.283ms %children 99.94% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/Verify total 0.028ms self 0.028ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation total 40.196ms self 11.788ms children 28.408ms %children 70.67% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize total 28.408ms self 0.215ms children 28.194ms %children 99.24% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/FoldConstants total 0.306ms self 0.306ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.472ms self 0.472ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/NormalizeNames total 1.049ms self 1.049ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/Simplify total 0.636ms self 0.636ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardLets total 2.982ms self 2.982ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.190ms self 0.190ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/PruneDeadFields total 2.999ms self 2.999ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/FoldConstants total 0.520ms self 0.520ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.511ms self 0.511ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/NormalizeNames total 1.157ms self 1.157ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/Simplify total 0.748ms self 0.748ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.614 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardLets total 2.829ms self 2.829ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.201ms self 0.201ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/PruneDeadFields total 2.505ms self 2.505ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/FoldConstants total 0.562ms self 0.562ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.440ms self 0.440ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/NormalizeNames total 1.051ms self 1.051ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/Simplify total 0.702ms self 0.702ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardLets total 3.631ms self 3.631ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.303ms self 0.303ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/PruneDeadFields total 4.401ms self 4.401ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/Verify total 0.059ms self 0.059ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/LowerArrayAggsToRunAggs total 107.866ms self 0.030ms children 107.836ms %children 99.97% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/LowerArrayAggsToRunAggs/Verify total 0.219ms self 0.219ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.615 root: INFO: timing SparkBackend.executeEncode/Compile/LowerArrayAggsToRunAggs/LoweringTransformation total 107.079ms self 107.079ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/LowerArrayAggsToRunAggs/Verify total 0.539ms self 0.539ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs total 45.096ms self 0.019ms children 45.077ms %children 99.96% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/Verify total 0.041ms self 0.041ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation total 45.004ms self 9.734ms children 35.271ms %children 78.37% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize total 35.271ms self 0.220ms children 35.051ms %children 99.38% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/FoldConstants total 0.455ms self 0.455ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.649ms self 0.649ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/NormalizeNames total 1.568ms self 1.568ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/Simplify total 0.860ms self 0.860ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardLets total 4.365ms self 4.365ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardRelationalLets total 0.256ms self 0.256ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/PruneDeadFields total 4.200ms self 4.200ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/FoldConstants total 0.833ms self 0.833ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.577ms self 0.577ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.616 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/NormalizeNames total 1.343ms self 1.343ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/Simplify total 0.861ms self 0.861ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardLets total 5.424ms self 5.424ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardRelationalLets total 0.283ms self 0.283ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/PruneDeadFields total 3.534ms self 3.534ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/FoldConstants total 0.781ms self 0.781ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.499ms self 0.499ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/NormalizeNames total 1.018ms self 1.018ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/Simplify total 0.603ms self 0.603ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardLets total 4.154ms self 4.154ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardRelationalLets total 0.179ms self 0.179ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/PruneDeadFields total 2.608ms self 2.608ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/Verify total 0.032ms self 0.032ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/Compile/EmitContext.analyze total 11.007ms self 11.007ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/InitializeCompiledFunction total 62.572ms self 62.572ms children 0.000ms %children 0.00% 2023-08-16 15:03:37.617 root: INFO: timing SparkBackend.executeEncode/RunCompiledFunction total 355.189ms self 355.189ms children 0.000ms %children 0.00% 2023-08-16 15:03:38.451 root: INFO: RegionPool: initialized for thread 16: Thread-4 2023-08-16 15:03:38.478 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, thread 16: Thread-4 2023-08-16 15:03:38.478 root: INFO: timing SparkBackend.parse_value_ir total 26.612ms self 26.612ms children 0.000ms %children 0.00% 2023-08-16 15:03:38.479 root: INFO: RegionPool: initialized for thread 16: Thread-4 2023-08-16 15:03:38.480 root: INFO: starting execution of query hail_query_2 of initial size 503 2023-08-16 15:03:38.500 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 503: (Let __rng_state (RNGStateLiteral) (MakeTuple (0) (ToArray (StreamMap __uid_39 (ToStream False (GetField rows (TableCollect (TableMapRows (MatrixColsTable (MatrixMapCols () (MatrixMapGlobals (MatrixMapCols None (MatrixFilterEntries (MatrixMapEntries (MatrixUnionRows (MatrixMapRows (MatrixMapEntries (MatrixMapRows (MatrixUnionRows (MatrixKeyRowsBy (locus alleles) True (MatrixMapRows (MatrixKeyRowsBy (locus) False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterRows (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},col_key:[s],col:Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}},entry:Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt )) (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False))) (Coalesce (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2)) (False))) (Let __cse_1 (GetField alleles (Ref va)) (Let __cse_2 (GetField locus (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (Ref va)) None (__uid_3 (ArraySort __uid_9 __uid_10 (StreamFlatMap __uid_7 (StreamFilter __uid_4 (StreamRange 2 False (I32 1) (ArrayLen (CastToArray (Ref __cse_1))) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __cse_1) (Ref __uid_4)) (Str "*"))) (ToStream False (Let __uid_8 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __cse_2) (MakeArray Array[String] (ApplyIR 7 indexArray () String (Ref __cse_1) (I32 0)) (ApplyIR 8 indexArray () String (Ref __cse_1) (Ref __uid_7)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __uid_8)) (Ref __cse_2)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __uid_8))) (locus (GetField locus (Ref __uid_8))) (a_index (Ref __uid_7)) (was_split (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __uid_9)) (False) (If (IsNA (Ref __uid_10)) (True) (If (False) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_10) (Ref __uid_9)) (I32 0)) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_9) (Ref __uid_10)) (I32 0))))))))))))) (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai old_locus old_alleles) (Let __uid_11 (GetField __uid_3 (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai __uid_3) (Ref va)) None (locus (GetField locus (Ref __uid_11))) (alleles (GetField alleles (Ref __uid_11))) (a_index (GetField a_index (Ref __uid_11))) (was_split (GetField was_split (Ref __uid_11))) (old_locus (GetField locus (Ref va))) (old_alleles (GetField alleles (Ref va)))))))) (MatrixKeyRowsBy (locus alleles) False (MatrixMapRows (MatrixKeyRowsBy () False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterRows (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},col_key:[s],col:Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}},entry:Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt )) (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False))) (Coalesce (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2)) (False))) (Let __cse_3 (GetField alleles (Ref va)) (Let __cse_4 (GetField locus (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (Ref va)) None (__uid_3 (ArraySort __uid_16 __uid_17 (StreamFlatMap __uid_14 (StreamFilter __uid_4 (StreamRange 2 False (I32 1) (ArrayLen (CastToArray (Ref __cse_3))) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __cse_3) (Ref __uid_4)) (Str "*"))) (ToStream False (Let __uid_15 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __cse_4) (MakeArray Array[String] (ApplyIR 13 indexArray () String (Ref __cse_3) (I32 0)) (ApplyIR 14 indexArray () String (Ref __cse_3) (Ref __uid_14)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __uid_15)) (Ref __cse_4)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __uid_15))) (locus (GetField locus (Ref __uid_15))) (a_index (Ref __uid_14)) (was_split (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __uid_16)) (False) (If (IsNA (Ref __uid_17)) (True) (If (False) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_17) (Ref __uid_16)) (I32 0)) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_16) (Ref __uid_17)) (I32 0))))))))))))) (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai old_locus old_alleles) (Let __uid_18 (GetField __uid_3 (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai __uid_3) (Ref va)) None (locus (GetField locus (Ref __uid_18))) (alleles (GetField alleles (Ref __uid_18))) (a_index (GetField a_index (Ref __uid_18))) (was_split (GetField was_split (Ref __uid_18))) (old_locus (GetField locus (Ref va))) (old_alleles (GetField alleles (Ref va))))))))) (Let __cse_5 (GetField vep (Ref va)) (Let __cse_6 (GetField a_index (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai old_locus old_alleles) (Ref va)) None (vep (InsertFields (Ref __cse_5) None (intergenic_consequences (ToArray (StreamFilter __uid_19 (ToStream False (GetField intergenic_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_19)) (Ref __cse_6))))) (motif_feature_consequences (ToArray (StreamFilter __uid_20 (ToStream False (GetField motif_feature_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_20)) (Ref __cse_6))))) (regulatory_feature_consequences (ToArray (StreamFilter __uid_21 (ToStream False (GetField regulatory_feature_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_21)) (Ref __cse_6))))) (transcript_consequences (ToArray (StreamFilter __uid_22 (ToStream False (GetField transcript_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_22)) (Ref __cse_6))))))))))) (Let __cse_10 (GetField a_index (Ref va)) (Let __cse_9 (If (ApplyUnaryPrimOp Bang (IsNA (GetField PL (Ref g)))) (ToArray (StreamMap __uid_24 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (ApplyIR 27 min () Int32 (ToArray (StreamFilter __uid_27 (StreamMap __uid_26 (StreamFilter __uid_25 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (CastToArray (GetField old_alleles (Ref va))))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __uid_25)) (GetField a_index (Ref va)))) (Ref __uid_24))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref g)) (Ref __uid_26))) (ApplyUnaryPrimOp Bang (IsNA (Ref __uid_27)))))))) (NA Array[Int32])) (InsertFields (SelectFields (DP GQ MIN_DP PID RGQ SB GT PGT AD PL adj) (Ref g)) None (GT (Apply 16 downcode () Call (GetField GT (Ref g)) (Ref __cse_10))) (DP (GetField DP (Ref g))) (AD (If (ApplyUnaryPrimOp Bang (IsNA (GetField AD (Ref g)))) (Let __cse_7 (GetField AD (Ref g)) (Let __cse_8 (GetField a_index (Ref va)) (MakeArray Array[Int32] (ApplyBinaryPrimOp Subtract (ApplyIR 17 sum () Int32 (ToArray (StreamFilter __uid_23 (ToStream False (Ref __cse_7)) (ApplyUnaryPrimOp Bang (IsNA (Ref __uid_23)))))) (ApplyIR 18 indexArray () Int32 (Ref __cse_7) (Ref __cse_8))) (ApplyIR 19 indexArray () Int32 (Ref __cse_7) (Ref __cse_8))))) (NA Array[Int32]))) (PL (Ref __cse_9)) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (Ref __cse_9)) (GetField GQ (Ref g)))) (PGT (Apply 29 downcode () Call (GetField PGT (Ref g)) (Ref __cse_10))) (PID (GetField PID (Ref g))))))) (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (MakeStruct (locus (GetField locus (Ref va))) (alleles (GetField alleles (Ref va))) (rsid (GetField rsid (Ref va))) (a_index (GetField a_index (Ref va))) (was_split (GetField was_split (Ref va))) (filters (GetField filters (Ref va))) (info (GetField info (Ref va))) (vep (GetField vep (Ref va))) (vqsr (GetField vqsr (Ref va))) (region_flag (GetField region_flag (Ref va))) (allele_info (GetField allele_info (Ref va))) (hgdp_tgp_freq (GetField hgdp_tgp_freq (Ref va))) (gnomad_freq (GetField gnomad_freq (Ref va))) (gnomad_popmax (GetField gnomad_popmax (Ref va))) (gnomad_faf (GetField gnomad_faf (Ref va))) (gnomad_raw_qual_hists (GetField gnomad_raw_qual_hists (Ref va))) (gnomad_qual_hists (GetField gnomad_qual_hists (Ref va))) (gnomad_age_hist_het (GetField gnomad_age_hist_het (Ref va))) (gnomad_age_hist_hom (GetField gnomad_age_hist_hom (Ref va))) (cadd (GetField cadd (Ref va))) (revel (GetField revel (Ref va))) (splice_ai (GetField splice_ai (Ref va))) (primate_ai (GetField primate_ai (Ref va))) (old_locus (GetField old_locus (Ref va))) (old_alleles (GetField old_alleles (Ref va)))))) (MatrixMapRows (MatrixFilterRows (MatrixFilterRows (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},col_key:[s],col:Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}},entry:Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt )) (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2)) (False))) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (Ref va)) None (a_index (I32 1)) (was_split (False))))) (InsertFields (SelectFields (DP GQ MIN_DP PID RGQ SB GT PGT AD PL adj) (Ref g)) None (GT (If (Let __uid_37 (Apply 32 isPhased () Boolean (GetField GT (Ref g))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __uid_37))) (Ref __uid_37))) (Apply 33 unphase () Call (GetField GT (Ref g))) (GetField GT (Ref g)))))) (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref g)) (I32 20)) (False))) (InsertFields (SelectFields (s) (SelectFields (s bam_metrics sample_qc gnomad_sex_imputation gnomad_population_inference gnomad_sample_qc_residuals gnomad_sample_filters gnomad_high_quality gnomad_release relatedness_inference hgdp_tgp_meta high_quality) (Ref sa))) None)) (InsertFields (SelectFields () (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref global))) None)) (SelectFields (s) (Ref sa)))) (InsertFields (SelectFields (s) (SelectFields (s) (Ref row))) None))))) (GetField s (Ref __uid_39)))))) 2023-08-16 15:03:38.504 root: INFO: generated MatrixFilterIntervals node with 2 intervals: Intervals: [[chr1:97573863]-[chr1:97573863]], [[chr1:97579893]-[chr1:97579893]] Predicate: (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False)) Post: (Coalesce (True) (False)) 2023-08-16 15:03:38.506 root: INFO: generated MatrixFilterIntervals node with 2 intervals: Intervals: [[chr1:97573863]-[chr1:97573863]], [[chr1:97579893]-[chr1:97579893]] Predicate: (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False)) Post: (Coalesce (True) (False)) 2023-08-16 15:03:38.509 root: INFO: generated MatrixFilterIntervals node with 2 intervals: Intervals: [[chr1:97573863]-[chr1:97573863]], [[chr1:97579893]-[chr1:97579893]] Predicate: (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False)) Post: (Coalesce (True) (False)) 2023-08-16 15:03:38.581 root: INFO: Prune: InsertFields: eliminating field 'alleles' 2023-08-16 15:03:38.581 root: INFO: Prune: InsertFields: eliminating field 'was_split' 2023-08-16 15:03:38.581 root: INFO: Prune: InsertFields: eliminating field 'old_locus' 2023-08-16 15:03:38.583 root: INFO: Prune: InsertFields: eliminating field 'locus' 2023-08-16 15:03:38.583 root: INFO: Prune: InsertFields: eliminating field 'alleles' 2023-08-16 15:03:38.583 root: INFO: Prune: InsertFields: eliminating field 'was_split' 2023-08-16 15:03:38.583 root: INFO: Prune: InsertFields: eliminating field 'old_locus' 2023-08-16 15:03:38.583 root: INFO: Prune: InsertFields: eliminating field 'vep' 2023-08-16 15:03:38.584 root: INFO: Prune: InsertFields: eliminating field 'GT' 2023-08-16 15:03:38.584 root: INFO: Prune: InsertFields: eliminating field 'DP' 2023-08-16 15:03:38.584 root: INFO: Prune: InsertFields: eliminating field 'AD' 2023-08-16 15:03:38.584 root: INFO: Prune: InsertFields: eliminating field 'PL' 2023-08-16 15:03:38.584 root: INFO: Prune: InsertFields: eliminating field 'PGT' 2023-08-16 15:03:38.584 root: INFO: Prune: InsertFields: eliminating field 'PID' 2023-08-16 15:03:38.584 root: INFO: Prune: MakeStruct: eliminating field 'locus' 2023-08-16 15:03:38.584 root: INFO: Prune: MakeStruct: eliminating field 'alleles' 2023-08-16 15:03:38.584 root: INFO: Prune: MakeStruct: eliminating field 'rsid' 2023-08-16 15:03:38.584 root: INFO: Prune: MakeStruct: eliminating field 'a_index' 2023-08-16 15:03:38.584 root: INFO: Prune: MakeStruct: eliminating field 'was_split' 2023-08-16 15:03:38.584 root: INFO: Prune: MakeStruct: eliminating field 'filters' 2023-08-16 15:03:38.584 root: INFO: Prune: MakeStruct: eliminating field 'info' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'vep' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'vqsr' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'region_flag' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'allele_info' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'hgdp_tgp_freq' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_freq' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_popmax' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_faf' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_raw_qual_hists' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_qual_hists' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_age_hist_het' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_age_hist_hom' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'cadd' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'revel' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'splice_ai' 2023-08-16 15:03:38.585 root: INFO: Prune: MakeStruct: eliminating field 'primate_ai' 2023-08-16 15:03:38.586 root: INFO: Prune: InsertFields: eliminating field 'a_index' 2023-08-16 15:03:38.586 root: INFO: Prune: InsertFields: eliminating field 'was_split' 2023-08-16 15:03:38.586 root: INFO: Prune: InsertFields: eliminating field 'GT' 2023-08-16 15:03:38.640 root: INFO: Prune: InsertFields: eliminating field 'locus' 2023-08-16 15:03:38.640 root: INFO: Prune: MakeStruct: eliminating field 'vep' 2023-08-16 15:03:38.693 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 293: (MakeTuple (0) (ToArray (StreamMap __iruid_810 (ToStream False (GetField rows (TableCollect (MatrixColsTable (MatrixMapCols () (MatrixFilterEntries (MatrixUnionRows (MatrixMapRows (MatrixMapEntries (MatrixUnionRows (MatrixMapCols () (MatrixMapRows (MatrixKeyRowsBy () False (MatrixMapRows (MatrixKeyRowsBy () False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (MatrixRead Matrix{global:Struct{},col_key:[s],col:Struct{s:String},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32},entry:Struct{GQ:Int32,PL:Array[Int32]}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt ))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2)) (False))) (Let __iruid_811 (GetField alleles (Ref va)) (Let __iruid_812 (GetField locus (Ref va)) (InsertFields (Ref va) None (__uid_3 (ArraySort __iruid_813 __iruid_814 (StreamFlatMap __iruid_815 (StreamFilter __iruid_816 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_811)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_811) (Ref __iruid_816)) (Str "*"))) (ToStream False (Let __iruid_817 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_812) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_811) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_811) (Ref __iruid_815)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_817)) (Ref __iruid_812)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_817))) (locus (GetField locus (Ref __iruid_817))) (a_index (Ref __iruid_815)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_813)) (False) (If (IsNA (Ref __iruid_814)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_813) (Ref __iruid_814)) (I32 0)))))))))))) (InsertFields (SelectFields (a_index) (Ref va)) None (a_index (GetField a_index (GetField __uid_3 (Ref va)))) (old_alleles (GetField alleles (Ref va)))))) (If (IsNA (Ref va)) (NA Struct{a_index:Int32,old_alleles:Array[String]}) (MakeStruct (a_index (GetField a_index (Ref va))) (old_alleles (GetField old_alleles (Ref va)))))) (Ref sa)) (MatrixMapCols () (MatrixKeyRowsBy () False (MatrixMapRows (MatrixKeyRowsBy () False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (MatrixRead Matrix{global:Struct{},col_key:[s],col:Struct{s:String},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32},entry:Struct{GQ:Int32,PL:Array[Int32]}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt ))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2)) (False))) (Let __iruid_820 (GetField alleles (Ref va)) (Let __iruid_821 (GetField locus (Ref va)) (InsertFields (Ref va) None (__uid_3 (ArraySort __iruid_822 __iruid_823 (StreamFlatMap __iruid_824 (StreamFilter __iruid_825 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_820)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_820) (Ref __iruid_825)) (Str "*"))) (ToStream False (Let __iruid_826 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_821) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_820) (I32 0)) (ApplyIR 14 indexArray () String (Ref __iruid_820) (Ref __iruid_824)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_826)) (Ref __iruid_821)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_826))) (locus (GetField locus (Ref __iruid_826))) (a_index (Ref __iruid_824)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_822)) (False) (If (IsNA (Ref __iruid_823)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_822) (Ref __iruid_823)) (I32 0)))))))))))) (InsertFields (SelectFields (a_index) (Ref va)) None (a_index (GetField a_index (GetField __uid_3 (Ref va)))) (old_alleles (GetField alleles (Ref va)))))) (If (IsNA (Ref sa)) (NA Struct{}) (Literal Struct{} )))) (InsertFields (SelectFields (GQ) (Ref g)) None (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref g))) (NA Array[Int32]) (ToArray (StreamMap __iruid_828 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_833 __iruid_834) __iruid_829 (StreamFilter __iruid_830 (StreamMap __iruid_831 (StreamFilter __iruid_832 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref va)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_832)) (GetField a_index (Ref va)))) (Ref __iruid_828))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref g)) (Ref __iruid_831))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_830)))) (NA Int32) (True) (If (Ref __iruid_834) (Ref __iruid_829) (If (ApplyComparisonOp LT (Ref __iruid_833) (Ref __iruid_829)) (Ref __iruid_833) (Ref __iruid_829))) (False) (Ref __iruid_833)))))) (GetField GQ (Ref g)))))) (Literal Struct{} )) (MatrixMapCols () (MatrixMapRows (MatrixKeyRowsBy () False (MatrixFilterRows (MatrixFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (MatrixRead Matrix{global:Struct{},col_key:[s],col:Struct{s:String},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String]},entry:Struct{GQ:Int32}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt ))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref va))) (I32 2)) (False)))) (If (IsNA (Ref va)) (NA Struct{}) (Literal Struct{} ))) (If (IsNA (Ref sa)) (NA Struct{}) (Literal Struct{} )))) (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref g)) (I32 20)) (False))) (Ref sa)))))) (GetField s (Ref __iruid_810))))) 2023-08-16 15:03:38.748 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 529: (MakeTuple (0) (ToArray (StreamMap __iruid_810 (ToStream False (GetField rows (TableCollect (TableKeyBy () False (TableParallelize None (Let __cols_and_globals (TableGetGlobals (TableMapGlobals (TableMapRows (TableUnion (TableMapRows (TableMapRows (TableUnion (TableMapGlobals (TableMapRows (TableKeyBy () False (TableMapRows (TableKeyBy () False (TableExplode ("__uid_3") (TableMapRows (TableFilter (TableFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (TableMapGlobals (TableRead Table{global:Struct{},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,PL:Array[Int32]}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries )) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))))))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles a_index) (Ref row)))) (I32 2)) (False))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_859 (MakeStruct) (Let __iruid_811 (GetField alleles (SelectFields (locus alleles a_index) (Ref row))) (Let __iruid_812 (GetField locus (SelectFields (locus alleles a_index) (Ref row))) (InsertFields (SelectFields (locus alleles a_index) (Ref row)) None (__uid_3 (ArraySort __iruid_813 __iruid_814 (StreamFlatMap __iruid_815 (StreamFilter __iruid_816 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_811)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_811) (Ref __iruid_816)) (Str "*"))) (ToStream False (Let __iruid_817 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_812) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_811) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_811) (Ref __iruid_815)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_817)) (Ref __iruid_812)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_817))) (locus (GetField locus (Ref __iruid_817))) (a_index (Ref __iruid_815)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles a_index) (Ref row)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_813)) (False) (If (IsNA (Ref __iruid_814)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_813) (Ref __iruid_814)) (I32 0)))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_861 (MakeStruct) (InsertFields (SelectFields (a_index) (SelectFields (locus alleles a_index __uid_3) (Ref row))) None (a_index (GetField a_index (GetField __uid_3 (SelectFields (locus alleles a_index __uid_3) (Ref row))))) (old_alleles (GetField alleles (SelectFields (locus alleles a_index __uid_3) (Ref row)))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_862 (MakeStruct) (If (IsNA (SelectFields (a_index old_alleles) (Ref row))) (NA Struct{a_index:Int32,old_alleles:Array[String]}) (MakeStruct (a_index (GetField a_index (SelectFields (a_index old_alleles) (Ref row)))) (old_alleles (GetField old_alleles (SelectFields (a_index old_alleles) (Ref row))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))) (InsertFields (Ref global) None (__cols (ToArray (StreamMap __iruid_863 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)))) (Let __cols_array (GetField __cols (Ref global)) (Let sa (ArrayRef -1 (Ref __cols_array) (Ref __iruid_863)) (Ref sa)))))))) (TableMapRows (TableMapGlobals (TableKeyBy () False (TableMapRows (TableKeyBy () False (TableExplode ("__uid_3") (TableMapRows (TableFilter (TableFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (TableMapGlobals (TableRead Table{global:Struct{},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,PL:Array[Int32]}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries )) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))))))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles a_index) (Ref row)))) (I32 2)) (False))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_864 (MakeStruct) (Let __iruid_820 (GetField alleles (SelectFields (locus alleles a_index) (Ref row))) (Let __iruid_821 (GetField locus (SelectFields (locus alleles a_index) (Ref row))) (InsertFields (SelectFields (locus alleles a_index) (Ref row)) None (__uid_3 (ArraySort __iruid_822 __iruid_823 (StreamFlatMap __iruid_824 (StreamFilter __iruid_825 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_820)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_820) (Ref __iruid_825)) (Str "*"))) (ToStream False (Let __iruid_826 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_821) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_820) (I32 0)) (ApplyIR 14 indexArray () String (Ref __iruid_820) (Ref __iruid_824)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_826)) (Ref __iruid_821)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_826))) (locus (GetField locus (Ref __iruid_826))) (a_index (Ref __iruid_824)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles a_index) (Ref row)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_822)) (False) (If (IsNA (Ref __iruid_823)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_822) (Ref __iruid_823)) (I32 0)))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_866 (MakeStruct) (InsertFields (SelectFields (a_index) (SelectFields (locus alleles a_index __uid_3) (Ref row))) None (a_index (GetField a_index (GetField __uid_3 (SelectFields (locus alleles a_index __uid_3) (Ref row))))) (old_alleles (GetField alleles (SelectFields (locus alleles a_index __uid_3) (Ref row)))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) (InsertFields (Ref global) None (__cols (ToArray (StreamMap __iruid_867 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)))) (Let __cols_array (GetField __cols (Ref global)) (Let sa (ArrayRef -1 (Ref __cols_array) (Ref __iruid_867)) (If (IsNA (Ref sa)) (NA Struct{}) (Literal Struct{} ))))))))) (SelectFields (a_index old_alleles `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (InsertFields (Ref row) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (ToArray (StreamZip -1 AssumeSameLength (g sa) (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))) (ToStream False (GetField __cols (Ref global))) (InsertFields (SelectFields (GQ) (Ref g)) None (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref g))) (NA Array[Int32]) (ToArray (StreamMap __iruid_828 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_833 __iruid_834) __iruid_829 (StreamFilter __iruid_830 (StreamMap __iruid_831 (StreamFilter __iruid_832 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (SelectFields (a_index old_alleles) (Ref row))))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_832)) (GetField a_index (SelectFields (a_index old_alleles) (Ref row))))) (Ref __iruid_828))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref g)) (Ref __iruid_831))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_830)))) (NA Int32) (True) (If (Ref __iruid_834) (Ref __iruid_829) (If (ApplyComparisonOp LT (Ref __iruid_833) (Ref __iruid_829)) (Ref __iruid_833) (Ref __iruid_829))) (False) (Ref __iruid_833)))))) (GetField GQ (Ref g)))))))))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_868 (MakeStruct) (Literal Struct{} )) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))) (TableMapRows (TableMapGlobals (TableMapRows (TableKeyBy () False (TableFilter (TableFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (TableMapGlobals (TableRead Table{global:Struct{},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries )) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))))))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (SelectFields (locus alleles) (Ref row)))) (I32 2)) (False)))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_869 (MakeStruct) (If (IsNA (SelectFields (locus alleles) (Ref row))) (NA Struct{}) (Literal Struct{} ))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))) (InsertFields (Ref global) None (__cols (ToArray (StreamMap __iruid_870 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)))) (Let __cols_array (GetField __cols (Ref global)) (Let sa (ArrayRef -1 (Ref __cols_array) (Ref __iruid_870)) (If (IsNA (Ref sa)) (NA Struct{}) (Literal Struct{} ))))))))) (SelectFields ( `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (InsertFields (Ref row) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (ToArray (StreamMap i (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)))) (Let g (ArrayRef -1 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)) (Ref i)) (If (Let sa (ArrayRef -1 (GetField __cols (Ref global)) (Ref i)) (ApplyUnaryPrimOp Bang (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref g)) (I32 20)) (False)))) (NA Struct{GQ:Int32}) (Ref g)))))))) (InsertFields (Ref global) None (__cols (ToArray (StreamMap __iruid_871 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)))) (Let __cols_array (GetField __cols (Ref global)) (Let sa (ArrayRef -1 (Ref __cols_array) (Ref __iruid_871)) (Ref sa))))))))) (MakeStruct (rows (GetField __cols (Ref __cols_and_globals))) (global (SelectFields () (Ref __cols_and_globals)))))))))) (GetField s (Ref __iruid_810))))) 2023-08-16 15:03:38.830 root: INFO: Prune: MakeStruct: eliminating field 'global' 2023-08-16 15:03:38.840 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 33: (MakeTuple (0) (ToArray (StreamMap __iruid_960 (ToStream False (GetField rows (Let __iruid_961 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_962 (ToArray (StreamMap __iruid_963 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_961)) (I32 1)) (ArrayRef -1 (Ref __iruid_961) (Ref __iruid_963)))) (MakeStruct (rows (ToArray (StreamMap __iruid_964 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_962)) (I32 1)) (ArrayRef -1 (Ref __iruid_962) (Ref __iruid_964)))))))))) (GetField s (Ref __iruid_960))))) 2023-08-16 15:03:38.844 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 33: (MakeTuple (0) (ToArray (StreamMap __iruid_960 (ToStream False (GetField rows (Let __iruid_961 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_962 (ToArray (StreamMap __iruid_963 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_961)) (I32 1)) (ArrayRef -1 (Ref __iruid_961) (Ref __iruid_963)))) (MakeStruct (rows (ToArray (StreamMap __iruid_964 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_962)) (I32 1)) (ArrayRef -1 (Ref __iruid_962) (Ref __iruid_964)))))))))) (GetField s (Ref __iruid_960))))) 2023-08-16 15:03:38.857 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 33: (MakeTuple (0) (ToArray (StreamMap __iruid_975 (ToStream False (GetField rows (Let __iruid_976 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_977 (ToArray (StreamMap __iruid_978 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_976)) (I32 1)) (ArrayRef -1 (Ref __iruid_976) (Ref __iruid_978)))) (MakeStruct (rows (ToArray (StreamMap __iruid_979 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_977)) (I32 1)) (ArrayRef -1 (Ref __iruid_977) (Ref __iruid_979)))))))))) (GetField s (Ref __iruid_975))))) 2023-08-16 15:03:38.861 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 34: (MakeTuple (0) (MakeTuple (0) (ToArray (StreamMap __iruid_975 (ToStream False (GetField rows (Let __iruid_976 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_977 (ToArray (StreamMap __iruid_978 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_976)) (I32 1)) (ArrayRef -1 (Ref __iruid_976) (Ref __iruid_978)))) (MakeStruct (rows (ToArray (StreamMap __iruid_979 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_977)) (I32 1)) (ArrayRef -1 (Ref __iruid_977) (Ref __iruid_979)))))))))) (GetField s (Ref __iruid_975)))))) 2023-08-16 15:03:38.875 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 34: (MakeTuple (0) (MakeTuple (0) (ToArray (StreamMap __iruid_990 (ToStream False (GetField rows (Let __iruid_991 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_992 (ToArray (StreamMap __iruid_993 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_991)) (I32 1)) (ArrayRef -1 (Ref __iruid_991) (Ref __iruid_993)))) (MakeStruct (rows (ToArray (StreamMap __iruid_994 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_992)) (I32 1)) (ArrayRef -1 (Ref __iruid_992) (Ref __iruid_994)))))))))) (GetField s (Ref __iruid_990)))))) 2023-08-16 15:03:38.878 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 34: (MakeTuple (0) (MakeTuple (0) (ToArray (StreamMap __iruid_990 (ToStream False (GetField rows (Let __iruid_991 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_992 (ToArray (StreamMap __iruid_993 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_991)) (I32 1)) (ArrayRef -1 (Ref __iruid_991) (Ref __iruid_993)))) (MakeStruct (rows (ToArray (StreamMap __iruid_994 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_992)) (I32 1)) (ArrayRef -1 (Ref __iruid_992) (Ref __iruid_994)))))))))) (GetField s (Ref __iruid_990)))))) 2023-08-16 15:03:38.891 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 34: (MakeTuple (0) (MakeTuple (0) (ToArray (StreamMap __iruid_1005 (ToStream False (GetField rows (Let __iruid_1006 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_1007 (ToArray (StreamMap __iruid_1008 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_1006)) (I32 1)) (ArrayRef -1 (Ref __iruid_1006) (Ref __iruid_1008)))) (MakeStruct (rows (ToArray (StreamMap __iruid_1009 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_1007)) (I32 1)) (ArrayRef -1 (Ref __iruid_1007) (Ref __iruid_1009)))))))))) (GetField s (Ref __iruid_1005)))))) 2023-08-16 15:03:38.897 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 34: (MakeTuple (0) (MakeTuple (0) (ToArray (StreamMap __iruid_1005 (ToStream False (GetField rows (Let __iruid_1006 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_1007 (ToArray (StreamMap __iruid_1008 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_1006)) (I32 1)) (ArrayRef -1 (Ref __iruid_1006) (Ref __iruid_1008)))) (MakeStruct (rows (ToArray (StreamMap __iruid_1009 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_1007)) (I32 1)) (ArrayRef -1 (Ref __iruid_1007) (Ref __iruid_1009)))))))))) (GetField s (Ref __iruid_1005)))))) 2023-08-16 15:03:38.910 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 34: (MakeTuple (0) (MakeTuple (0) (ToArray (StreamMap __iruid_1020 (ToStream False (GetField rows (Let __iruid_1021 (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (Let __iruid_1022 (ToArray (StreamMap __iruid_1023 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_1021)) (I32 1)) (ArrayRef -1 (Ref __iruid_1021) (Ref __iruid_1023)))) (MakeStruct (rows (ToArray (StreamMap __iruid_1024 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_1022)) (I32 1)) (ArrayRef -1 (Ref __iruid_1022) (Ref __iruid_1024)))))))))) (GetField s (Ref __iruid_1020)))))) 2023-08-16 15:03:38.956 root: INFO: encoder cache hit 2023-08-16 15:03:38.957 MemoryStore: INFO: Block broadcast_2 stored as values in memory (estimated size 232.0 B, free 22.0 GiB) 2023-08-16 15:03:38.959 MemoryStore: INFO: Block broadcast_2_piece0 stored as bytes in memory (estimated size 177.0 B, free 22.0 GiB) 2023-08-16 15:03:38.960 BlockManagerInfo: INFO: Added broadcast_2_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 177.0 B, free: 22.0 GiB) 2023-08-16 15:03:38.962 SparkContext: INFO: Created broadcast 2 from broadcast at SparkBackend.scala:342 2023-08-16 15:03:38.962 root: INFO: instruction count: 3: __C174HailClassLoaderContainer. 2023-08-16 15:03:38.962 root: INFO: instruction count: 3: __C174HailClassLoaderContainer. 2023-08-16 15:03:38.963 root: INFO: instruction count: 3: __C175FSContainer. 2023-08-16 15:03:38.963 root: INFO: instruction count: 3: __C175FSContainer. 2023-08-16 15:03:38.997 root: INFO: instruction count: 3: __C176Compiled. 2023-08-16 15:03:38.998 root: INFO: instruction count: 41: __C176Compiled.apply 2023-08-16 15:03:38.999 root: INFO: instruction count: 191: __C176Compiled.__m177split_ToArray 2023-08-16 15:03:39.001 root: INFO: instruction count: 332: __C176Compiled.__m179split_ToArray 2023-08-16 15:03:39.002 root: INFO: instruction count: 192: __C176Compiled.__m187DECODE_r_struct_of_r_binaryANDo_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_int64ANDr_int64ANDr_int64ANDr_int64ANDo_int64ANDr_int64ANDo_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_float32ANDo_float32ANDo_float32ANDo_float32ANDo_float32ANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_int64ANDo_float64ANDo_int64ENDANDo_struct_of_o_array_of_o_float64ANDo_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_array_of_r_binaryANDo_boolANDo_boolANDo_array_of_o_binaryENDANDo_boolANDo_boolANDo_struct_of_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDr_boolENDANDo_struct_of_o_binaryANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_float64ANDo_struct_of_o_binaryANDo_binaryENDANDo_array_of_o_float64ANDr_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolENDANDo_binaryENDANDo_boolEND_TO_SBaseStructPointer 2023-08-16 15:03:39.002 root: INFO: instruction count: 31: __C176Compiled.__m188INPLACE_DECODE_r_binary_TO_r_string 2023-08-16 15:03:39.003 root: INFO: instruction count: 125: __C176Compiled.__m189SKIP_o_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:39.003 root: INFO: instruction count: 3: __C176Compiled.__m190SKIP_o_float64 2023-08-16 15:03:39.004 root: INFO: instruction count: 141: __C176Compiled.__m191SKIP_o_struct_of_o_int64ANDr_int64ANDr_int64ANDr_int64ANDo_int64ANDr_int64ANDo_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:39.005 root: INFO: instruction count: 3: __C176Compiled.__m192SKIP_o_int64 2023-08-16 15:03:39.005 root: INFO: instruction count: 3: __C176Compiled.__m193SKIP_r_int64 2023-08-16 15:03:39.006 root: INFO: instruction count: 186: __C176Compiled.__m194SKIP_o_struct_of_o_float32ANDo_float32ANDo_float32ANDo_float32ANDo_float32ANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_int64ANDo_float64ANDo_int64END 2023-08-16 15:03:39.006 root: INFO: instruction count: 3: __C176Compiled.__m195SKIP_o_float32 2023-08-16 15:03:39.006 root: INFO: instruction count: 7: __C176Compiled.__m196SKIP_o_binary 2023-08-16 15:03:39.007 root: INFO: instruction count: 186: __C176Compiled.__m197SKIP_o_struct_of_o_array_of_o_float64ANDo_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:39.008 root: INFO: instruction count: 51: __C176Compiled.__m198SKIP_o_array_of_o_float64 2023-08-16 15:03:39.009 root: INFO: instruction count: 125: __C176Compiled.__m199SKIP_o_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:39.009 root: INFO: instruction count: 73: __C176Compiled.__m200SKIP_o_struct_of_o_array_of_r_binaryANDo_boolANDo_boolANDo_array_of_o_binaryEND 2023-08-16 15:03:39.010 root: INFO: instruction count: 22: __C176Compiled.__m201SKIP_o_array_of_r_binary 2023-08-16 15:03:39.010 root: INFO: instruction count: 7: __C176Compiled.__m202SKIP_r_binary 2023-08-16 15:03:39.010 root: INFO: instruction count: 3: __C176Compiled.__m203SKIP_o_bool 2023-08-16 15:03:39.010 root: INFO: instruction count: 51: __C176Compiled.__m204SKIP_o_array_of_o_binary 2023-08-16 15:03:39.011 root: INFO: instruction count: 16: __C176Compiled.__m205SKIP_o_struct_of_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDr_boolEND 2023-08-16 15:03:39.011 root: INFO: instruction count: 22: __C176Compiled.__m206SKIP_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:39.012 root: INFO: instruction count: 86: __C176Compiled.__m207SKIP_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:39.012 root: INFO: instruction count: 3: __C176Compiled.__m208SKIP_r_bool 2023-08-16 15:03:39.013 root: INFO: instruction count: 151: __C176Compiled.__m209SKIP_o_struct_of_o_binaryANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_float64ANDo_struct_of_o_binaryANDo_binaryENDANDo_array_of_o_float64ANDr_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolENDANDo_binaryEND 2023-08-16 15:03:39.013 root: INFO: instruction count: 47: __C176Compiled.__m210SKIP_o_struct_of_o_binaryANDo_binaryEND 2023-08-16 15:03:39.014 root: INFO: instruction count: 60: __C176Compiled.__m211SKIP_r_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolEND 2023-08-16 15:03:39.014 root: INFO: instruction count: 12: __C176Compiled.__m214setup_jab 2023-08-16 15:03:39.015 root: INFO: instruction count: 189: __C176Compiled.__m222split_ToArray 2023-08-16 15:03:39.015 root: INFO: instruction count: 35: __C176Compiled.__m229arrayref_bounds_check 2023-08-16 15:03:39.016 root: INFO: instruction count: 189: __C176Compiled.__m236split_ToArray 2023-08-16 15:03:39.016 root: INFO: instruction count: 9: __C176Compiled.setPartitionIndex 2023-08-16 15:03:39.016 root: INFO: instruction count: 4: __C176Compiled.addPartitionRegion 2023-08-16 15:03:39.016 root: INFO: instruction count: 4: __C176Compiled.setPool 2023-08-16 15:03:39.017 root: INFO: instruction count: 3: __C176Compiled.addHailClassLoader 2023-08-16 15:03:39.017 root: INFO: instruction count: 3: __C176Compiled.addFS 2023-08-16 15:03:39.017 root: INFO: instruction count: 35: __C176Compiled.addLiterals 2023-08-16 15:03:39.017 root: INFO: instruction count: 27: __C176Compiled.__m258DECODE_r_struct_of_r_struct_of_r_int64ANDr_binaryENDEND_TO_SBaseStructPointer 2023-08-16 15:03:39.018 root: INFO: instruction count: 26: __C176Compiled.__m259INPLACE_DECODE_r_struct_of_r_int64ANDr_binaryEND_TO_r_struct_of_r_int64ANDr_stringEND 2023-08-16 15:03:39.018 root: INFO: instruction count: 10: __C176Compiled.__m260INPLACE_DECODE_r_int64_TO_r_int64 2023-08-16 15:03:39.660 root: INFO: RegionPool: REPORT_THRESHOLD: 256.0K allocated (192.0K blocks / 64.0K chunks), regions.size = 2, 0 current java objects, thread 16: Thread-4 2023-08-16 15:03:39.664 root: INFO: encoder cache miss (1 hits, 3 misses, 0.250) 2023-08-16 15:03:39.676 root: INFO: instruction count: 3: __C261HailClassLoaderContainer. 2023-08-16 15:03:39.676 root: INFO: instruction count: 3: __C261HailClassLoaderContainer. 2023-08-16 15:03:39.676 root: INFO: instruction count: 3: __C262FSContainer. 2023-08-16 15:03:39.676 root: INFO: instruction count: 3: __C262FSContainer. 2023-08-16 15:03:39.678 root: INFO: instruction count: 3: __C263etypeEncode. 2023-08-16 15:03:39.679 root: INFO: instruction count: 7: __C263etypeEncode.apply 2023-08-16 15:03:39.679 root: INFO: instruction count: 33: __C263etypeEncode.__m264ENCODE_SBaseStructPointer_TO_o_struct_of_o_array_of_o_binaryEND 2023-08-16 15:03:39.679 root: INFO: instruction count: 78: __C263etypeEncode.__m265ENCODE_SIndexablePointer_TO_o_array_of_o_binary 2023-08-16 15:03:39.680 root: INFO: instruction count: 16: __C263etypeEncode.__m266ENCODE_SStringPointer_TO_o_binary 2023-08-16 15:03:39.685 root: INFO: finished execution of query hail_query_2, result size is 47.83 KiB 2023-08-16 15:03:39.685 root: INFO: RegionPool: FREE: 448.0K allocated (192.0K blocks / 256.0K chunks), regions.size = 2, 0 current java objects, thread 16: Thread-4 2023-08-16 15:03:39.685 root: INFO: timing SparkBackend.executeEncode total 1.206s self 40.856ms children 1.165s %children 96.61% 2023-08-16 15:03:39.685 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR total 207.345ms self 0.021ms children 207.325ms %children 99.99% 2023-08-16 15:03:39.685 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/Verify total 0.103ms self 0.103ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation total 207.088ms self 27.278ms children 179.809ms %children 86.83% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize total 179.809ms self 0.307ms children 179.502ms %children 99.83% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 1.828ms self 1.828ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 7.121ms self 7.121ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 11.660ms self 11.660ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 15.792ms self 15.792ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 25.241ms self 25.241ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 1.134ms self 1.134ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 22.681ms self 22.681ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 2.078ms self 2.078ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 2.011ms self 2.011ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 4.221ms self 4.221ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 16.115ms self 16.115ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 14.432ms self 14.432ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 1.304ms self 1.304ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 16.198ms self 16.198ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 1.601ms self 1.601ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.686 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 1.694ms self 1.694ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.687 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 3.700ms self 3.700ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.687 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 4.689ms self 4.689ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.687 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 11.265ms self 11.265ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.687 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.490ms self 0.490ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.687 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 14.247ms self 14.247ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.687 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, initial IR/Verify total 0.134ms self 0.134ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.687 root: INFO: timing SparkBackend.executeEncode/LowerMatrixToTable total 29.079ms self 0.020ms children 29.059ms %children 99.93% 2023-08-16 15:03:39.687 root: INFO: timing SparkBackend.executeEncode/LowerMatrixToTable/Verify total 0.073ms self 0.073ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.687 root: INFO: timing SparkBackend.executeEncode/LowerMatrixToTable/LoweringTransformation total 28.347ms self 28.347ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.687 root: INFO: timing SparkBackend.executeEncode/LowerMatrixToTable/Verify total 0.640ms self 0.640ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.687 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable total 108.211ms self 0.027ms children 108.185ms %children 99.98% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.234ms self 0.234ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation total 107.923ms self 17.991ms children 89.932ms %children 83.33% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize total 89.932ms self 0.194ms children 89.738ms %children 99.78% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 3.082ms self 3.082ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 3.468ms self 3.468ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/NormalizeNames total 6.852ms self 6.852ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 65.447ms self 65.447ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 1.957ms self 1.957ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.130ms self 0.130ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 1.589ms self 1.589ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.306ms self 0.306ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.226ms self 0.226ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/NormalizeNames total 0.439ms self 0.439ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.345ms self 0.345ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 1.012ms self 1.012ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.688 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.137ms self 0.137ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 1.135ms self 1.135ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/FoldConstants total 0.303ms self 0.303ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.198ms self 0.198ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/NormalizeNames total 0.417ms self 0.417ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/Simplify total 0.337ms self 0.337ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardLets total 1.099ms self 1.099ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.138ms self 0.138ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/LoweringTransformation/Optimize/PruneDeadFields total 1.122ms self 1.122ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after LowerMatrixToTable/Verify total 0.027ms self 0.027ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/LiftRelationalValuesToRelationalLets total 0.202ms self 0.012ms children 0.190ms %children 93.91% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/LiftRelationalValuesToRelationalLets/Verify total 0.027ms self 0.027ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/LiftRelationalValuesToRelationalLets/LoweringTransformation total 0.144ms self 0.144ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/LiftRelationalValuesToRelationalLets/Verify total 0.020ms self 0.020ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/LowerOrInterpretNonCompilable total 0.309ms self 0.012ms children 0.297ms %children 96.17% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/LowerOrInterpretNonCompilable/Verify total 0.023ms self 0.023ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/LowerOrInterpretNonCompilable/LoweringTransformation total 0.234ms self 0.234ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/LowerOrInterpretNonCompilable/Verify total 0.041ms self 0.041ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable total 15.191ms self 0.016ms children 15.175ms %children 99.90% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.017ms self 0.017ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.689 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation total 15.135ms self 4.864ms children 10.271ms %children 67.86% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize total 10.271ms self 0.161ms children 10.110ms %children 98.43% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.183ms self 0.183ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.201ms self 0.201ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/NormalizeNames total 0.402ms self 0.402ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.337ms self 0.337ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 1.042ms self 1.042ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.136ms self 0.136ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 1.135ms self 1.135ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.311ms self 0.311ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.174ms self 0.174ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/NormalizeNames total 0.410ms self 0.410ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.345ms self 0.345ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.963ms self 0.963ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.135ms self 0.135ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 1.066ms self 1.066ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/FoldConstants total 0.283ms self 0.283ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.180ms self 0.180ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/NormalizeNames total 0.378ms self 0.378ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/Simplify total 0.332ms self 0.332ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.690 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardLets total 0.947ms self 0.947ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/ForwardRelationalLets total 0.129ms self 0.129ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/LoweringTransformation/Optimize/PruneDeadFields total 1.021ms self 1.021ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/optimize: relationalLowerer, after InterpretNonCompilable/Verify total 0.023ms self 0.023ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile total 160.825ms self 108.538ms children 52.288ms %children 32.51% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR total 16.460ms self 0.016ms children 16.444ms %children 99.90% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/Verify total 0.021ms self 0.021ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation total 16.399ms self 4.967ms children 11.433ms %children 69.71% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize total 11.433ms self 0.188ms children 11.245ms %children 98.36% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.207ms self 0.207ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.212ms self 0.212ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 0.452ms self 0.452ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.359ms self 0.359ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 1.099ms self 1.099ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.148ms self 0.148ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 1.155ms self 1.155ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.302ms self 0.302ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.184ms self 0.184ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.691 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 0.424ms self 0.424ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.348ms self 0.348ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 1.034ms self 1.034ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.151ms self 0.151ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 1.151ms self 1.151ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/FoldConstants total 0.315ms self 0.315ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.248ms self 0.248ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/NormalizeNames total 0.438ms self 0.438ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/Simplify total 0.356ms self 0.356ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardLets total 1.159ms self 1.159ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.141ms self 0.141ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/LoweringTransformation/Optimize/PruneDeadFields total 1.364ms self 1.364ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, initial IR/Verify total 0.024ms self 0.024ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/InlineApplyIR total 0.203ms self 0.009ms children 0.193ms %children 95.32% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/InlineApplyIR/Verify total 0.045ms self 0.045ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/InlineApplyIR/LoweringTransformation total 0.103ms self 0.103ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/InlineApplyIR/Verify total 0.046ms self 0.046ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR total 15.729ms self 0.015ms children 15.714ms %children 99.90% 2023-08-16 15:03:39.692 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/Verify total 0.018ms self 0.018ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation total 15.671ms self 4.886ms children 10.785ms %children 68.82% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize total 10.785ms self 0.159ms children 10.626ms %children 98.53% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/FoldConstants total 0.183ms self 0.183ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.202ms self 0.202ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/NormalizeNames total 0.411ms self 0.411ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/Simplify total 0.387ms self 0.387ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardLets total 0.989ms self 0.989ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.137ms self 0.137ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/PruneDeadFields total 1.100ms self 1.100ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/FoldConstants total 0.293ms self 0.293ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.178ms self 0.178ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/NormalizeNames total 0.377ms self 0.377ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/Simplify total 0.349ms self 0.349ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardLets total 1.024ms self 1.024ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.134ms self 0.134ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/PruneDeadFields total 1.091ms self 1.091ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/FoldConstants total 0.296ms self 0.296ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.180ms self 0.180ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/NormalizeNames total 0.481ms self 0.481ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.693 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/Simplify total 0.347ms self 0.347ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardLets total 1.138ms self 1.138ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/ForwardRelationalLets total 0.138ms self 0.138ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/LoweringTransformation/Optimize/PruneDeadFields total 1.191ms self 1.191ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after InlineApplyIR/Verify total 0.025ms self 0.025ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/LowerArrayAggsToRunAggs total 2.515ms self 0.014ms children 2.501ms %children 99.46% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/LowerArrayAggsToRunAggs/Verify total 0.065ms self 0.065ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/LowerArrayAggsToRunAggs/LoweringTransformation total 2.375ms self 2.375ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/LowerArrayAggsToRunAggs/Verify total 0.061ms self 0.061ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs total 15.325ms self 0.016ms children 15.309ms %children 99.90% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/Verify total 0.021ms self 0.021ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation total 15.265ms self 4.840ms children 10.424ms %children 68.29% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize total 10.424ms self 0.183ms children 10.242ms %children 98.25% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/FoldConstants total 0.185ms self 0.185ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.214ms self 0.214ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/NormalizeNames total 0.405ms self 0.405ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/Simplify total 0.350ms self 0.350ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.694 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardLets total 1.051ms self 1.051ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardRelationalLets total 0.140ms self 0.140ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/PruneDeadFields total 1.127ms self 1.127ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/FoldConstants total 0.319ms self 0.319ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.181ms self 0.181ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/NormalizeNames total 0.346ms self 0.346ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/Simplify total 0.362ms self 0.362ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardLets total 0.949ms self 0.949ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardRelationalLets total 0.147ms self 0.147ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/PruneDeadFields total 1.059ms self 1.059ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/FoldConstants total 0.333ms self 0.333ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ExtractIntervalFilters total 0.173ms self 0.173ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/NormalizeNames total 0.364ms self 0.364ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/Simplify total 0.364ms self 0.364ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardLets total 0.929ms self 0.929ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/ForwardRelationalLets total 0.135ms self 0.135ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/LoweringTransformation/Optimize/PruneDeadFields total 1.109ms self 1.109ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/optimize: compileLowerer, after LowerArrayAggsToRunAggs/Verify total 0.023ms self 0.023ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/Compile/EmitContext.analyze total 2.056ms self 2.056ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.695 root: INFO: timing SparkBackend.executeEncode/InitializeCompiledFunction total 4.396ms self 4.396ms children 0.000ms %children 0.00% 2023-08-16 15:03:39.696 root: INFO: timing SparkBackend.executeEncode/RunCompiledFunction total 639.786ms self 639.786ms children 0.000ms %children 0.00% 2023-08-16 15:03:41.662 root: INFO: RegionPool: initialized for thread 16: Thread-4 2023-08-16 15:03:41.844 root: INFO: RegionPool: FREE: 64.0K allocated (64.0K blocks / 0 chunks), regions.size = 1, 0 current java objects, thread 16: Thread-4 2023-08-16 15:03:41.844 root: INFO: timing SparkBackend.parse_value_ir total 181.688ms self 181.688ms children 0.000ms %children 0.00% 2023-08-16 15:03:41.845 root: INFO: RegionPool: initialized for thread 16: Thread-4 2023-08-16 15:03:41.846 root: INFO: starting execution of query hail_query_3 of initial size 553 2023-08-16 15:03:41.873 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 553: (Let __rng_state (RNGStateLiteral) (MatrixWrite "{\"name\":\"MatrixNativeWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"stageLocally\":false,\"codecSpecJSONStr\":null,\"partitions\":null,\"partitionsTypeStr\":null,\"checkpointFile\":null}" (MatrixMapCols None (MatrixMapRows (MatrixAggregateColsByKey (MatrixMapCols ("ancestry") (MatrixMapCols None (MatrixAnnotateColsTable "__uid_40" (MatrixFilterEntries (MatrixMapEntries (MatrixUnionRows (MatrixMapRows (MatrixMapEntries (MatrixMapRows (MatrixUnionRows (MatrixKeyRowsBy (locus alleles) True (MatrixMapRows (MatrixKeyRowsBy (locus) False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterRows (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},col_key:[s],col:Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}},entry:Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt )) (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False))) (Coalesce (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2)) (False))) (Let __cse_1 (GetField alleles (Ref va)) (Let __cse_2 (GetField locus (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (Ref va)) None (__uid_3 (ArraySort __uid_9 __uid_10 (StreamFlatMap __uid_7 (StreamFilter __uid_4 (StreamRange 2 False (I32 1) (ArrayLen (CastToArray (Ref __cse_1))) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __cse_1) (Ref __uid_4)) (Str "*"))) (ToStream False (Let __uid_8 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __cse_2) (MakeArray Array[String] (ApplyIR 7 indexArray () String (Ref __cse_1) (I32 0)) (ApplyIR 8 indexArray () String (Ref __cse_1) (Ref __uid_7)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __uid_8)) (Ref __cse_2)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __uid_8))) (locus (GetField locus (Ref __uid_8))) (a_index (Ref __uid_7)) (was_split (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __uid_9)) (False) (If (IsNA (Ref __uid_10)) (True) (If (False) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_10) (Ref __uid_9)) (I32 0)) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_9) (Ref __uid_10)) (I32 0))))))))))))) (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai old_locus old_alleles) (Let __uid_11 (GetField __uid_3 (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai __uid_3) (Ref va)) None (locus (GetField locus (Ref __uid_11))) (alleles (GetField alleles (Ref __uid_11))) (a_index (GetField a_index (Ref __uid_11))) (was_split (GetField was_split (Ref __uid_11))) (old_locus (GetField locus (Ref va))) (old_alleles (GetField alleles (Ref va)))))))) (MatrixKeyRowsBy (locus alleles) False (MatrixMapRows (MatrixKeyRowsBy () False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterRows (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},col_key:[s],col:Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}},entry:Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt )) (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False))) (Coalesce (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2)) (False))) (Let __cse_3 (GetField alleles (Ref va)) (Let __cse_4 (GetField locus (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (Ref va)) None (__uid_3 (ArraySort __uid_16 __uid_17 (StreamFlatMap __uid_14 (StreamFilter __uid_4 (StreamRange 2 False (I32 1) (ArrayLen (CastToArray (Ref __cse_3))) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __cse_3) (Ref __uid_4)) (Str "*"))) (ToStream False (Let __uid_15 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __cse_4) (MakeArray Array[String] (ApplyIR 13 indexArray () String (Ref __cse_3) (I32 0)) (ApplyIR 14 indexArray () String (Ref __cse_3) (Ref __uid_14)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __uid_15)) (Ref __cse_4)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __uid_15))) (locus (GetField locus (Ref __uid_15))) (a_index (Ref __uid_14)) (was_split (ApplyComparisonOp GT (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __uid_16)) (False) (If (IsNA (Ref __uid_17)) (True) (If (False) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_17) (Ref __uid_16)) (I32 0)) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __uid_16) (Ref __uid_17)) (I32 0))))))))))))) (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai old_locus old_alleles) (Let __uid_18 (GetField __uid_3 (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai __uid_3) (Ref va)) None (locus (GetField locus (Ref __uid_18))) (alleles (GetField alleles (Ref __uid_18))) (a_index (GetField a_index (Ref __uid_18))) (was_split (GetField was_split (Ref __uid_18))) (old_locus (GetField locus (Ref va))) (old_alleles (GetField alleles (Ref va))))))))) (Let __cse_5 (GetField vep (Ref va)) (Let __cse_6 (GetField a_index (Ref va)) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai old_locus old_alleles) (Ref va)) None (vep (InsertFields (Ref __cse_5) None (intergenic_consequences (ToArray (StreamFilter __uid_19 (ToStream False (GetField intergenic_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_19)) (Ref __cse_6))))) (motif_feature_consequences (ToArray (StreamFilter __uid_20 (ToStream False (GetField motif_feature_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_20)) (Ref __cse_6))))) (regulatory_feature_consequences (ToArray (StreamFilter __uid_21 (ToStream False (GetField regulatory_feature_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_21)) (Ref __cse_6))))) (transcript_consequences (ToArray (StreamFilter __uid_22 (ToStream False (GetField transcript_consequences (Ref __cse_5))) (ApplyComparisonOp EQ (GetField allele_num (Ref __uid_22)) (Ref __cse_6))))))))))) (Let __cse_10 (GetField a_index (Ref va)) (Let __cse_9 (If (ApplyUnaryPrimOp Bang (IsNA (GetField PL (Ref g)))) (ToArray (StreamMap __uid_24 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (ApplyIR 27 min () Int32 (ToArray (StreamFilter __uid_27 (StreamMap __uid_26 (StreamFilter __uid_25 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (CastToArray (GetField old_alleles (Ref va))))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __uid_25)) (GetField a_index (Ref va)))) (Ref __uid_24))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref g)) (Ref __uid_26))) (ApplyUnaryPrimOp Bang (IsNA (Ref __uid_27)))))))) (NA Array[Int32])) (InsertFields (SelectFields (DP GQ MIN_DP PID RGQ SB GT PGT AD PL adj) (Ref g)) None (GT (Apply 16 downcode () Call (GetField GT (Ref g)) (Ref __cse_10))) (DP (GetField DP (Ref g))) (AD (If (ApplyUnaryPrimOp Bang (IsNA (GetField AD (Ref g)))) (Let __cse_7 (GetField AD (Ref g)) (Let __cse_8 (GetField a_index (Ref va)) (MakeArray Array[Int32] (ApplyBinaryPrimOp Subtract (ApplyIR 17 sum () Int32 (ToArray (StreamFilter __uid_23 (ToStream False (Ref __cse_7)) (ApplyUnaryPrimOp Bang (IsNA (Ref __uid_23)))))) (ApplyIR 18 indexArray () Int32 (Ref __cse_7) (Ref __cse_8))) (ApplyIR 19 indexArray () Int32 (Ref __cse_7) (Ref __cse_8))))) (NA Array[Int32]))) (PL (Ref __cse_9)) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (Ref __cse_9)) (GetField GQ (Ref g)))) (PGT (Apply 29 downcode () Call (GetField PGT (Ref g)) (Ref __cse_10))) (PID (GetField PID (Ref g))))))) (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (MakeStruct (locus (GetField locus (Ref va))) (alleles (GetField alleles (Ref va))) (rsid (GetField rsid (Ref va))) (a_index (GetField a_index (Ref va))) (was_split (GetField was_split (Ref va))) (filters (GetField filters (Ref va))) (info (GetField info (Ref va))) (vep (GetField vep (Ref va))) (vqsr (GetField vqsr (Ref va))) (region_flag (GetField region_flag (Ref va))) (allele_info (GetField allele_info (Ref va))) (hgdp_tgp_freq (GetField hgdp_tgp_freq (Ref va))) (gnomad_freq (GetField gnomad_freq (Ref va))) (gnomad_popmax (GetField gnomad_popmax (Ref va))) (gnomad_faf (GetField gnomad_faf (Ref va))) (gnomad_raw_qual_hists (GetField gnomad_raw_qual_hists (Ref va))) (gnomad_qual_hists (GetField gnomad_qual_hists (Ref va))) (gnomad_age_hist_het (GetField gnomad_age_hist_het (Ref va))) (gnomad_age_hist_hom (GetField gnomad_age_hist_hom (Ref va))) (cadd (GetField cadd (Ref va))) (revel (GetField revel (Ref va))) (splice_ai (GetField splice_ai (Ref va))) (primate_ai (GetField primate_ai (Ref va))) (old_locus (GetField old_locus (Ref va))) (old_alleles (GetField old_alleles (Ref va)))))) (MatrixMapRows (MatrixFilterRows (MatrixFilterRows (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},col_key:[s],col:Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}},entry:Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt )) (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (CastToArray (GetField alleles (Ref va)))) (I32 2)) (False))) (InsertFields (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (Ref va)) None (a_index (I32 1)) (was_split (False))))) (InsertFields (SelectFields (DP GQ MIN_DP PID RGQ SB GT PGT AD PL adj) (Ref g)) None (GT (If (Let __uid_37 (Apply 32 isPhased () Boolean (GetField GT (Ref g))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __uid_37))) (Ref __uid_37))) (Apply 33 unphase () Call (GetField GT (Ref g))) (GetField GT (Ref g)))))) (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref g)) (I32 20)) (False))) (TableKeyBy (s) False (TableParallelize None (MakeStruct (rows (Literal Array[Struct{s:String,ancestry:String}] )) (global (MakeStruct)))))) (InsertFields (SelectFields (s bam_metrics sample_qc gnomad_sex_imputation gnomad_population_inference gnomad_sample_qc_residuals gnomad_sample_filters gnomad_high_quality gnomad_release relatedness_inference hgdp_tgp_meta high_quality) (Ref sa)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref sa)))))) (InsertFields (SelectFields (s bam_metrics sample_qc gnomad_sex_imputation gnomad_population_inference gnomad_sample_qc_residuals gnomad_sample_filters gnomad_high_quality gnomad_release relatedness_inference hgdp_tgp_meta high_quality ancestry) (Ref sa)) None)) (InsertFields (MakeStruct) None (hwe (Let __uid_43 (AggLet __uid_agg41 False (GetField GT (Ref g)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __uid_agg41)) (I32 2)) (ApplyIR 40 dict () Dict[Int32,Int32] (ToArray (StreamMap __uid_42 (ToStream False (ApplyIR 37 dictToArray () Array[Tuple[Int32,Int64]] (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __uid_agg41)) (ApplyAggOp Count () ())))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __uid_42)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __uid_42)) (I64 2147483648)) (ApplyIR 38 toInt32 () Int32 (GetTupleElement 1 (Ref __uid_42))) (Die Int32 39 (Str "hardy_wein..."))))))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __uid_43) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __uid_43) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __uid_43) (I32 2) (I32 0)) (False))))) (MakeStruct)) (InsertFields (SelectFields (locus alleles) (SelectFields (locus alleles rsid a_index was_split filters info vep vqsr region_flag allele_info hgdp_tgp_freq gnomad_freq gnomad_popmax gnomad_faf gnomad_raw_qual_hists gnomad_qual_hists gnomad_age_hist_het gnomad_age_hist_hom cadd revel splice_ai primate_ai) (Ref va))) None)) (InsertFields (SelectFields (ancestry) (SelectFields (ancestry) (Ref sa))) None)))) 2023-08-16 15:03:41.877 root: INFO: generated MatrixFilterIntervals node with 2 intervals: Intervals: [[chr1:97573863]-[chr1:97573863]], [[chr1:97579893]-[chr1:97579893]] Predicate: (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False)) Post: (Coalesce (True) (False)) 2023-08-16 15:03:41.879 root: INFO: generated MatrixFilterIntervals node with 2 intervals: Intervals: [[chr1:97573863]-[chr1:97573863]], [[chr1:97579893]-[chr1:97579893]] Predicate: (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False)) Post: (Coalesce (True) (False)) 2023-08-16 15:03:41.882 root: INFO: generated MatrixFilterIntervals node with 2 intervals: Intervals: [[chr1:97573863]-[chr1:97573863]], [[chr1:97579893]-[chr1:97579893]] Predicate: (Coalesce (ApplyIR 1 contains () Boolean (Literal Array[Locus(GRCh38)] ) (GetField locus (Ref va))) (False)) Post: (Coalesce (True) (False)) 2023-08-16 15:03:41.993 root: INFO: Prune: InsertFields: eliminating field 'was_split' 2023-08-16 15:03:41.993 root: INFO: Prune: InsertFields: eliminating field 'old_locus' 2023-08-16 15:03:41.995 root: INFO: Prune: InsertFields: eliminating field 'was_split' 2023-08-16 15:03:41.995 root: INFO: Prune: InsertFields: eliminating field 'old_locus' 2023-08-16 15:03:41.996 root: INFO: Prune: InsertFields: eliminating field 'vep' 2023-08-16 15:03:41.996 root: INFO: Prune: InsertFields: eliminating field 'DP' 2023-08-16 15:03:41.996 root: INFO: Prune: InsertFields: eliminating field 'AD' 2023-08-16 15:03:41.996 root: INFO: Prune: InsertFields: eliminating field 'PL' 2023-08-16 15:03:41.996 root: INFO: Prune: InsertFields: eliminating field 'PGT' 2023-08-16 15:03:41.996 root: INFO: Prune: InsertFields: eliminating field 'PID' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'rsid' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'a_index' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'was_split' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'filters' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'info' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'vep' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'vqsr' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'region_flag' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'allele_info' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'hgdp_tgp_freq' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_freq' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_popmax' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_faf' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_raw_qual_hists' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_qual_hists' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_age_hist_het' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'gnomad_age_hist_hom' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'cadd' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'revel' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'splice_ai' 2023-08-16 15:03:41.997 root: INFO: Prune: MakeStruct: eliminating field 'primate_ai' 2023-08-16 15:03:41.998 root: INFO: Prune: InsertFields: eliminating field 'a_index' 2023-08-16 15:03:41.998 root: INFO: Prune: InsertFields: eliminating field 'was_split' 2023-08-16 15:03:42.184 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 361: (MatrixWrite "{\"name\":\"MatrixNativeWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"stageLocally\":false,\"codecSpecJSONStr\":null,\"partitions\":null,\"partitionsTypeStr\":null,\"checkpointFile\":null}" (MatrixAggregateColsByKey (MatrixMapCols ("ancestry") (MatrixAnnotateColsTable "__uid_40" (MatrixFilterEntries (MatrixMapEntries (MatrixUnionRows (MatrixMapRows (MatrixMapEntries (MatrixUnionRows (MatrixKeyRowsBy (locus alleles) True (MatrixMapRows (MatrixKeyRowsBy (locus) False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},col_key:[s],col:Struct{s:String},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32},entry:Struct{GQ:Int32,GT:Call,PL:Array[Int32]}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt ))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2)) (False))) (Let __iruid_1424 (GetField alleles (Ref va)) (Let __iruid_1425 (GetField locus (Ref va)) (InsertFields (Ref va) None (__uid_3 (ArraySort __iruid_1426 __iruid_1427 (StreamFlatMap __iruid_1428 (StreamFilter __iruid_1429 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_1424)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_1424) (Ref __iruid_1429)) (Str "*"))) (ToStream False (Let __iruid_1430 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_1425) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_1424) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_1424) (Ref __iruid_1428)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_1430)) (Ref __iruid_1425)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_1430))) (locus (GetField locus (Ref __iruid_1430))) (a_index (Ref __iruid_1428)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_1426)) (False) (If (IsNA (Ref __iruid_1427)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_1426) (Ref __iruid_1427)) (I32 0)))))))))))) (SelectFields (locus alleles a_index old_alleles) (Let __iruid_1432 (GetField __uid_3 (Ref va)) (InsertFields (Ref va) None (locus (GetField locus (Ref __iruid_1432))) (alleles (GetField alleles (Ref __iruid_1432))) (a_index (GetField a_index (Ref __iruid_1432))) (old_alleles (GetField alleles (Ref va)))))))) (MatrixKeyRowsBy (locus alleles) False (MatrixMapRows (MatrixKeyRowsBy () False (MatrixExplodeRows (__uid_3) (MatrixMapRows (MatrixFilterRows (MatrixFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},col_key:[s],col:Struct{s:String},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32},entry:Struct{GQ:Int32,GT:Call,PL:Array[Int32]}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt ))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2)) (False))) (Let __iruid_1433 (GetField alleles (Ref va)) (Let __iruid_1434 (GetField locus (Ref va)) (InsertFields (Ref va) None (__uid_3 (ArraySort __iruid_1435 __iruid_1436 (StreamFlatMap __iruid_1437 (StreamFilter __iruid_1438 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_1433)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_1433) (Ref __iruid_1438)) (Str "*"))) (ToStream False (Let __iruid_1439 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_1434) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_1433) (I32 0)) (ApplyIR 14 indexArray () String (Ref __iruid_1433) (Ref __iruid_1437)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_1439)) (Ref __iruid_1434)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_1439))) (locus (GetField locus (Ref __iruid_1439))) (a_index (Ref __iruid_1437)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref va))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_1435)) (False) (If (IsNA (Ref __iruid_1436)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_1435) (Ref __iruid_1436)) (I32 0)))))))))))) (SelectFields (locus alleles a_index old_alleles) (Let __iruid_1441 (GetField __uid_3 (Ref va)) (InsertFields (Ref va) None (locus (GetField locus (Ref __iruid_1441))) (alleles (GetField alleles (Ref __iruid_1441))) (a_index (GetField a_index (Ref __iruid_1441))) (old_alleles (GetField alleles (Ref va))))))))) (InsertFields (SelectFields (GQ GT) (Ref g)) None (GT (Apply 16 downcode () Call (GetField GT (Ref g)) (GetField a_index (Ref va)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref g))) (NA Array[Int32]) (ToArray (StreamMap __iruid_1442 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_1447 __iruid_1448) __iruid_1443 (StreamFilter __iruid_1444 (StreamMap __iruid_1445 (StreamFilter __iruid_1446 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref va)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_1446)) (GetField a_index (Ref va)))) (Ref __iruid_1442))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref g)) (Ref __iruid_1445))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_1444)))) (NA Int32) (True) (If (Ref __iruid_1448) (Ref __iruid_1443) (If (ApplyComparisonOp LT (Ref __iruid_1447) (Ref __iruid_1443)) (Ref __iruid_1447) (Ref __iruid_1443))) (False) (Ref __iruid_1447)))))) (GetField GQ (Ref g)))))) (MakeStruct (locus (GetField locus (Ref va))) (alleles (GetField alleles (Ref va))))) (MatrixFilterRows (MatrixFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (MatrixRead Matrix{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},col_key:[s],col:Struct{s:String},row_key:[[locus,alleles]],row:Struct{locus:Locus(GRCh38),alleles:Array[String]},entry:Struct{GQ:Int32,GT:Call}} False False (MatrixNativeReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt ))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref va))) (I32 2)) (False)))) (InsertFields (Ref g) None (GT (If (Let __iruid_1449 (Apply 32 isPhased () Boolean (GetField GT (Ref g))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_1449))) (Ref __iruid_1449))) (Apply 33 unphase () Call (GetField GT (Ref g))) (GetField GT (Ref g)))))) (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref g)) (I32 20)) (False))) (TableKeyBy (s) False (TableParallelize None (Literal Struct{rows:Array[Struct{s:String,ancestry:String}],global:Struct{}} )))) (InsertFields (SelectFields () (Ref sa)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref sa)))))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_1450 (AggLet __iruid_1451 False (GetField GT (Ref g)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_1451)) (I32 2)) (Let __iruid_1452 (ToArray (StreamMap __iruid_1453 (Let __iruid_1454 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_1451)) (ApplyAggOp Count () ())) (StreamMap __iruid_1455 (ToStream False (Ref __iruid_1454)) (MakeTuple (0 1) (GetField key (Ref __iruid_1455)) (GetField value (Ref __iruid_1455))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_1453)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_1453)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_1453))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_1452)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __iruid_1450) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __iruid_1450) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __iruid_1450) (I32 2) (I32 0)) (False))))) (Literal Struct{} ))) 2023-08-16 15:03:42.287 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 647: (TableWrite "{\"writer\":{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"stageLocally\":false,\"codecSpecJSONStr\":null,\"partitions\":null,\"partitionsTypeStr\":null,\"checkpointFile\":null},\"colsFieldName\":\"__cols\",\"entriesFieldName\":\"the entries! [877f12a8827e18f61222c6c8c5fb04a8]\",\"colKey\":[\"ancestry\"]}" (TableMapGlobals (TableMapRows (TableMapGlobals (TableMapGlobals (TableMapGlobals (TableMapRows (TableMapRows (TableUnion (TableMapRows (TableMapRows (TableUnion (TableKeyBy (locus alleles) True (TableMapRows (TableKeyBy (locus) False (TableExplode ("__uid_3") (TableMapRows (TableFilter (TableFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (TableMapGlobals (TableRead Table{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries )) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))))))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles a_index) (Ref row)))) (I32 2)) (False))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_1523 (MakeStruct) (Let __iruid_1424 (GetField alleles (SelectFields (locus alleles a_index) (Ref row))) (Let __iruid_1425 (GetField locus (SelectFields (locus alleles a_index) (Ref row))) (InsertFields (SelectFields (locus alleles a_index) (Ref row)) None (__uid_3 (ArraySort __iruid_1426 __iruid_1427 (StreamFlatMap __iruid_1428 (StreamFilter __iruid_1429 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_1424)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_1424) (Ref __iruid_1429)) (Str "*"))) (ToStream False (Let __iruid_1430 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_1425) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_1424) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_1424) (Ref __iruid_1428)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_1430)) (Ref __iruid_1425)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_1430))) (locus (GetField locus (Ref __iruid_1430))) (a_index (Ref __iruid_1428)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles a_index) (Ref row)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_1426)) (False) (If (IsNA (Ref __iruid_1427)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_1426) (Ref __iruid_1427)) (I32 0)))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_1525 (MakeStruct) (SelectFields (locus alleles a_index old_alleles) (Let __iruid_1432 (GetField __uid_3 (SelectFields (locus alleles a_index __uid_3) (Ref row))) (InsertFields (SelectFields (locus alleles a_index __uid_3) (Ref row)) None (locus (GetField locus (Ref __iruid_1432))) (alleles (GetField alleles (Ref __iruid_1432))) (a_index (GetField a_index (Ref __iruid_1432))) (old_alleles (GetField alleles (SelectFields (locus alleles a_index __uid_3) (Ref row)))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) (TableMapRows (TableKeyBy (locus alleles) False (TableMapRows (TableKeyBy () False (TableExplode ("__uid_3") (TableMapRows (TableFilter (TableFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (TableMapGlobals (TableRead Table{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries )) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))))))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles a_index) (Ref row)))) (I32 2)) (False))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_1526 (MakeStruct) (Let __iruid_1433 (GetField alleles (SelectFields (locus alleles a_index) (Ref row))) (Let __iruid_1434 (GetField locus (SelectFields (locus alleles a_index) (Ref row))) (InsertFields (SelectFields (locus alleles a_index) (Ref row)) None (__uid_3 (ArraySort __iruid_1435 __iruid_1436 (StreamFlatMap __iruid_1437 (StreamFilter __iruid_1438 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_1433)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_1433) (Ref __iruid_1438)) (Str "*"))) (ToStream False (Let __iruid_1439 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_1434) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_1433) (I32 0)) (ApplyIR 14 indexArray () String (Ref __iruid_1433) (Ref __iruid_1437)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_1439)) (Ref __iruid_1434)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_1439))) (locus (GetField locus (Ref __iruid_1439))) (a_index (Ref __iruid_1437)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (SelectFields (locus alleles a_index) (Ref row)))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_1435)) (False) (If (IsNA (Ref __iruid_1436)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_1435) (Ref __iruid_1436)) (I32 0)))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_1528 (MakeStruct) (SelectFields (locus alleles a_index old_alleles) (Let __iruid_1441 (GetField __uid_3 (SelectFields (locus alleles a_index __uid_3) (Ref row))) (InsertFields (SelectFields (locus alleles a_index __uid_3) (Ref row)) None (locus (GetField locus (Ref __iruid_1441))) (alleles (GetField alleles (Ref __iruid_1441))) (a_index (GetField a_index (Ref __iruid_1441))) (old_alleles (GetField alleles (SelectFields (locus alleles a_index __uid_3) (Ref row)))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) (SelectFields (locus alleles a_index old_alleles `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (InsertFields (Ref row) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (ToArray (StreamZip -1 AssumeSameLength (g sa) (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))) (ToStream False (GetField __cols (Ref global))) (InsertFields (SelectFields (GQ GT) (Ref g)) None (GT (Apply 16 downcode () Call (GetField GT (Ref g)) (GetField a_index (SelectFields (locus alleles a_index old_alleles) (Ref row))))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref g))) (NA Array[Int32]) (ToArray (StreamMap __iruid_1442 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_1447 __iruid_1448) __iruid_1443 (StreamFilter __iruid_1444 (StreamMap __iruid_1445 (StreamFilter __iruid_1446 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (SelectFields (locus alleles a_index old_alleles) (Ref row))))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_1446)) (GetField a_index (SelectFields (locus alleles a_index old_alleles) (Ref row))))) (Ref __iruid_1442))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref g)) (Ref __iruid_1445))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_1444)))) (NA Int32) (True) (If (Ref __iruid_1448) (Ref __iruid_1443) (If (ApplyComparisonOp LT (Ref __iruid_1447) (Ref __iruid_1443)) (Ref __iruid_1447) (Ref __iruid_1443))) (False) (Ref __iruid_1447)))))) (GetField GQ (Ref g)))))))))) (Let n_cols (ArrayLen (GetField __cols (Ref global))) (InsertFields (Let __iruid_1529 (MakeStruct) (MakeStruct (locus (GetField locus (SelectFields (locus alleles a_index old_alleles) (Ref row)))) (alleles (GetField alleles (SelectFields (locus alleles a_index old_alleles) (Ref row)))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)))))) (TableMapRows (TableFilter (TableFilterIntervals "[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97573863}},\"includeStart\":true,\"includeEnd\":true},{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97579893}},\"includeStart\":true,\"includeEnd\":true}]" True (TableMapGlobals (TableRead Table{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries )) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))))))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (SelectFields (locus alleles) (Ref row)))) (I32 2)) (False))) (SelectFields (locus alleles `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref row)))) (InsertFields (Ref row) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (ToArray (StreamZip -1 AssumeSameLength (g sa) (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))) (ToStream False (GetField __cols (Ref global))) (InsertFields (Ref g) None (GT (If (Let __iruid_1449 (Apply 32 isPhased () Boolean (GetField GT (Ref g))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_1449))) (Ref __iruid_1449))) (Apply 33 unphase () Call (GetField GT (Ref g))) (GetField GT (Ref g)))))))))) (InsertFields (Ref row) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (ToArray (StreamMap i (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)))) (Let g (ArrayRef -1 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)) (Ref i)) (If (Let sa (ArrayRef -1 (GetField __cols (Ref global)) (Ref i)) (ApplyUnaryPrimOp Bang (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref g)) (I32 20)) (False)))) (NA Struct{GQ:Int32,GT:Call}) (Ref g)))))))) (Let __dictfield (ToDict (ToStream False (ToArray (StreamMap __iruid_1530 (ToStream False (GetField rows (TableCollect (TableKeyBy () False (TableKeyBy (s) False (TableParallelize None (Literal Struct{rows:Array[Struct{s:String,ancestry:String}],global:Struct{}} ))))))) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_1530)) (SelectFields (ancestry) (Ref __iruid_1530))))))) (InsertFields (Ref global) None (__cols (ToArray (StreamMap __iruid_1522 (ToStream False (GetField __cols (Ref global))) (InsertFields (Ref __iruid_1522) None (__uid_40 (ApplyIR -1 get () Struct{ancestry:String} (Ref __dictfield) (MakeStruct (s (GetField s (Ref __iruid_1522))))))))))))) (InsertFields (Ref global) None (__cols (ToArray (StreamMap __iruid_1534 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)))) (Let __cols_array (GetField __cols (Ref global)) (Let sa (ArrayRef -1 (Ref __cols_array) (Ref __iruid_1534)) (InsertFields (SelectFields () (Ref sa)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref sa)))))))))))) (InsertFields (Ref global) None (__iruid_1520 (Let __cols_field (GetField __cols (Ref global)) (ToArray (ToStream False (GroupByKey (ToStream False (ToArray (StreamMap __iruid_1516 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (Ref __cols_field)) (I32 1)))) (Let __cols_field_element (ArrayRef -1 (Ref __cols_field) (Ref __iruid_1516)) (MakeStruct (key (SelectFields (ancestry) (Ref __cols_field_element))) (value (Ref __iruid_1516)))))))))))))) (InsertFields (Ref row) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __entries (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)) (Let __key_map (GetField __iruid_1520 (Ref global)) (ToArray (StreamMap __iruid_1517 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (Ref __key_map)) (I32 1)))) (StreamAgg __iruid_1521 (ToStream False (GetField value (ArrayRef -1 (Ref __key_map) (Ref __iruid_1517)))) (AggLet g False (ArrayRef -1 (Ref __entries) (Ref __iruid_1521)) (AggLet sa False (ArrayRef -1 (GetField __cols (Ref global)) (Ref __iruid_1521)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref g))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_1450 (AggLet __iruid_1451 False (GetField GT (Ref g)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_1451)) (I32 2)) (Let __iruid_1452 (ToArray (StreamMap __iruid_1453 (Let __iruid_1454 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_1451)) (ApplyAggOp Count () ())) (StreamMap __iruid_1455 (ToStream False (Ref __iruid_1454)) (MakeTuple (0 1) (GetField key (Ref __iruid_1455)) (GetField value (Ref __iruid_1455))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_1453)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_1453)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_1453))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_1452)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __iruid_1450) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __iruid_1450) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __iruid_1450) (I32 2) (I32 0)) (False)))))))))))))))) (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff __cols) (InsertFields (Ref global) None (__cols (Let __key_map (GetField __iruid_1520 (Ref global)) (ToArray (StreamMap __iruid_1518 (ToStream False (ToArray (StreamRange -1 False (I32 0) (ArrayLen (Ref __key_map)) (I32 1)))) (Let __struct2 (StreamAgg __iruid_1519 (ToStream False (GetField value (ArrayRef -1 (Ref __key_map) (Ref __iruid_1518)))) (AggLet sa False (ArrayRef -1 (GetField __cols (Ref global)) (Ref __iruid_1519)) (Literal Struct{} ))) (InsertFields (GetField key (ArrayRef -1 (Ref __key_map) (Ref __iruid_1518))) None)))))))))) 2023-08-16 15:03:42.685 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 594: (TableWrite "{\"writer\":{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"stageLocally\":false,\"codecSpecJSONStr\":null,\"partitions\":null,\"partitionsTypeStr\":null,\"checkpointFile\":null},\"colsFieldName\":\"__cols\",\"entriesFieldName\":\"the entries! [877f12a8827e18f61222c6c8c5fb04a8]\",\"colKey\":[\"ancestry\"]}" (TableMapGlobals (TableMapRows (TableMapGlobals (TableMapRows (TableUnion (TableMapRows (TableUnion (TableKeyBy (locus alleles) True (TableMapRows (TableKeyBy (locus) False (TableMapRows (TableKeyBy (locus) False (TableExplode ("__uid_3") (TableMapRows (TableFilter (TableMapGlobals (TableRead Table{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries (IntervalRead: 2 intervals, filter=true))) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} )))))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref row))) (I32 2)) (False))) (InsertFields (Let __iruid_1999 (GetField alleles (Ref row)) (Let __iruid_2000 (GetField locus (Ref row)) (InsertFields (SelectFields (locus alleles a_index) (Ref row)) None (__uid_3 (ArraySort __iruid_2001 __iruid_2002 (StreamFlatMap __iruid_2003 (StreamFilter __iruid_2004 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_1999)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_1999) (Ref __iruid_2004)) (Str "*"))) (ToStream False (Let __iruid_2005 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_2000) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_1999) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_1999) (Ref __iruid_2003)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_2005)) (Ref __iruid_2000)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_2005))) (locus (GetField locus (Ref __iruid_2005))) (a_index (Ref __iruid_2003)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref row))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_2001)) (False) (If (IsNA (Ref __iruid_2002)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_2001) (Ref __iruid_2002)) (I32 0))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) (Let __iruid_2100 (Ref row) (If (IsNA (Ref __iruid_2100)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_2100))) (alleles (GetField alleles (Ref __iruid_2100))) (a_index (GetField a_index (Ref __iruid_2100))) (__uid_3 (Let __iruid_2101 (GetField __uid_3 (Ref __iruid_2100)) (If (IsNA (Ref __iruid_2101)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_2101))) (locus (GetField locus (Ref __iruid_2101))) (a_index (GetField a_index (Ref __iruid_2101))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_2100)))))))) (Let __iruid_2008 (If (IsNA (Ref row)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref row))) (alleles (GetField alleles (Ref row))) (a_index (GetField a_index (Ref row))) (__uid_3 (Let __iruid_2009 (GetField __uid_3 (Ref row)) (If (IsNA (Ref __iruid_2009)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_2009))) (locus (GetField locus (Ref __iruid_2009))) (a_index (GetField a_index (Ref __iruid_2009))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))) (Let __iruid_2010 (If (IsNA (Ref __iruid_2008)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_2008))) (alleles (GetField alleles (Ref __iruid_2008))) (a_index (GetField a_index (Ref __iruid_2008))) (__uid_3 (Let __iruid_2011 (GetField __uid_3 (Ref __iruid_2008)) (If (IsNA (Ref __iruid_2011)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_2011))) (locus (GetField locus (Ref __iruid_2011))) (a_index (GetField a_index (Ref __iruid_2011))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_2008))))) (InsertFields (Let __iruid_2012 (GetField __uid_3 (Ref __iruid_2010)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_2010)) None (locus (GetField locus (Ref __iruid_2012))) (alleles (GetField alleles (Ref __iruid_2012))) (a_index (GetField a_index (Ref __iruid_2012))) (old_alleles (GetField alleles (Ref __iruid_2010))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_2010)))))))) (TableKeyBy (locus alleles) False (TableMapRows (TableKeyBy () False (TableExplode ("__uid_3") (TableMapRows (TableFilter (TableMapGlobals (TableRead Table{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries (IntervalRead: 2 intervals, filter=true))) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} )))))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref row))) (I32 2)) (False))) (InsertFields (Let __iruid_2013 (GetField alleles (Ref row)) (Let __iruid_2014 (GetField locus (Ref row)) (InsertFields (SelectFields (locus alleles a_index) (Ref row)) None (__uid_3 (ArraySort __iruid_2015 __iruid_2016 (StreamFlatMap __iruid_2017 (StreamFilter __iruid_2018 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_2013)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_2013) (Ref __iruid_2018)) (Str "*"))) (ToStream False (Let __iruid_2019 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_2014) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_2013) (I32 0)) (ApplyIR 14 indexArray () String (Ref __iruid_2013) (Ref __iruid_2017)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_2019)) (Ref __iruid_2014)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_2019))) (locus (GetField locus (Ref __iruid_2019))) (a_index (Ref __iruid_2017)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref row))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_2015)) (False) (If (IsNA (Ref __iruid_2016)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_2015) (Ref __iruid_2016)) (I32 0))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) (InsertFields (Let __iruid_2021 (GetField __uid_3 (Ref row)) (InsertFields (SelectFields (locus alleles a_index) (Ref row)) None (locus (GetField locus (Ref __iruid_2021))) (alleles (GetField alleles (Ref __iruid_2021))) (a_index (GetField a_index (Ref __iruid_2021))) (old_alleles (GetField alleles (Ref row))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) (MakeStruct (locus (GetField locus (Ref row))) (alleles (GetField alleles (Ref row))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_2022 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_2022)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_2022)) (GetField a_index (Ref row)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_2022))) (NA Array[Int32]) (ToArray (StreamMap __iruid_2023 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_2028 __iruid_2029) __iruid_2024 (StreamFilter __iruid_2025 (StreamMap __iruid_2026 (StreamFilter __iruid_2027 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref row)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_2027)) (GetField a_index (Ref row)))) (Ref __iruid_2023))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref __iruid_2022)) (Ref __iruid_2026))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_2025)))) (NA Int32) (True) (If (Ref __iruid_2029) (Ref __iruid_2024) (If (ApplyComparisonOp LT (Ref __iruid_2028) (Ref __iruid_2024)) (Ref __iruid_2028) (Ref __iruid_2024))) (False) (Ref __iruid_2028)))))) (GetField GQ (Ref __iruid_2022)))))))))) (TableFilter (TableMapGlobals (TableRead Table{global:Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64},key:[locus,alleles],row:Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]}} False (TableNativeZippedReader gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/rows gs://gcp-public-data--gnomad/release/3.1.2/mt/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_dense.mt/entries (IntervalRead: 2 intervals, filter=true))) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} )))))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref row))) (I32 2)) (False)))) (Let __iruid_2030 (ToArray (StreamMap __iruid_2031 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))) (InsertFields (Ref __iruid_2031) None (GT (If (Let __iruid_2032 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_2031))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_2032))) (Ref __iruid_2032))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_2031))) (GetField GT (Ref __iruid_2031))))))) (InsertFields (Ref row) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (ToArray (StreamMap __iruid_2033 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)) (Let __iruid_2034 (ArrayRef -1 (Ref __iruid_2030) (Ref __iruid_2033)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_2034)) (I32 20)) (False)) (Ref __iruid_2034) (NA Struct{GQ:Int32,GT:Call}))))))))) (Let __iruid_2035 (ToDict (StreamMap __iruid_2036 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_2036)) (SelectFields (ancestry) (Ref __iruid_2036))))) (Let __iruid_2037 (ToArray (StreamMap __iruid_2038 (ToStream False (GetField __cols (Ref global))) (InsertFields (Ref __iruid_2038) None (__uid_40 (ApplyIR -1 get () Struct{ancestry:String} (Ref __iruid_2035) (MakeStruct (s (GetField s (Ref __iruid_2038))))))))) (Let __iruid_2039 (ToArray (StreamMap __iruid_2040 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2037)) (I32 1)) (Let __iruid_2041 (ArrayRef -1 (Ref __iruid_2037) (Ref __iruid_2040)) (InsertFields (SelectFields () (Ref __iruid_2041)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_2041)))))))) (InsertFields (Ref global) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__cols" "__iruid_1520") (__cols (Ref __iruid_2039)) (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_2042 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2039)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_2039) (Ref __iruid_2042))) (value (Ref __iruid_2042)))))))))))) (InsertFields (Ref row) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_2043 (GetField __iruid_1520 (Ref global)) (ToArray (StreamMap __iruid_2044 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2043)) (I32 1)) (StreamAgg __iruid_2045 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_2043) (Ref __iruid_2044)))) (AggLet __iruid_2046 False (ArrayRef -1 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)) (Ref __iruid_2045)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_2046))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_2047 (AggLet __iruid_2048 False (GetField GT (Ref __iruid_2046)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_2048)) (I32 2)) (Let __iruid_2049 (ToArray (StreamMap __iruid_2050 (Let __iruid_2051 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_2048)) (ApplyAggOp Count () ())) (StreamMap __iruid_2052 (ToStream False (Ref __iruid_2051)) (MakeTuple (0 1) (GetField key (Ref __iruid_2052)) (GetField value (Ref __iruid_2052))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_2050)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_2050)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_2050))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_2049)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __iruid_2047) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __iruid_2047) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __iruid_2047) (I32 2) (I32 0)) (False)))))))))))))) (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff __cols) (Ref global)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__cols") (__cols (Let __iruid_2065 (GetField __iruid_1520 (Ref global)) (ToArray (StreamMap __iruid_2066 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2065)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_2065) (Ref __iruid_2066)))))))))) 2023-08-16 15:03:42.708 root: INFO: LowerOrInterpretNonCompilable: whole stage code generation is a go! 2023-08-16 15:03:42.708 root: INFO: lowering result: TableWrite 2023-08-16 15:03:42.815 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString],a_index:PInt32})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 1)))) 2023-08-16 15:03:42.817 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString],a_index:PInt32})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 1)))) 2023-08-16 15:03:42.818 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString],a_index:PInt32})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 1)))) 2023-08-16 15:03:42.818 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString],a_index:PInt32})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 1)))) 2023-08-16 15:03:42.820 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString],a_index:PInt32})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 1)))) 2023-08-16 15:03:42.822 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString],a_index:PInt32})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 1)))) 2023-08-16 15:03:42.832 root: INFO: instruction count: 3: __C267HailClassLoaderContainer. 2023-08-16 15:03:42.833 root: INFO: instruction count: 3: __C267HailClassLoaderContainer. 2023-08-16 15:03:42.833 root: INFO: instruction count: 3: __C268FSContainer. 2023-08-16 15:03:42.833 root: INFO: instruction count: 3: __C268FSContainer. 2023-08-16 15:03:42.835 root: INFO: instruction count: 3: __C269Compiled. 2023-08-16 15:03:42.836 root: INFO: instruction count: 210: __C269Compiled.apply 2023-08-16 15:03:42.836 root: INFO: instruction count: 9: __C269Compiled.setPartitionIndex 2023-08-16 15:03:42.836 root: INFO: instruction count: 4: __C269Compiled.addPartitionRegion 2023-08-16 15:03:42.837 root: INFO: instruction count: 4: __C269Compiled.setPool 2023-08-16 15:03:42.837 root: INFO: instruction count: 3: __C269Compiled.addHailClassLoader 2023-08-16 15:03:42.837 root: INFO: instruction count: 3: __C269Compiled.addFS 2023-08-16 15:03:43.091 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall}]})) 1)))) 2023-08-16 15:03:43.092 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall}]})) 1)))) 2023-08-16 15:03:43.093 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall}]})) 1)))) 2023-08-16 15:03:43.094 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall}]})) 1)))) 2023-08-16 15:03:43.095 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall}]})) 1)))) 2023-08-16 15:03:43.096 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 4: (InsertFields (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]})) 0) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall}]})) 1)))) 2023-08-16 15:03:43.102 root: INFO: instruction count: 3: __C277HailClassLoaderContainer. 2023-08-16 15:03:43.103 root: INFO: instruction count: 3: __C277HailClassLoaderContainer. 2023-08-16 15:03:43.103 root: INFO: instruction count: 3: __C278FSContainer. 2023-08-16 15:03:43.103 root: INFO: instruction count: 3: __C278FSContainer. 2023-08-16 15:03:43.105 root: INFO: instruction count: 3: __C279Compiled. 2023-08-16 15:03:43.106 root: INFO: instruction count: 178: __C279Compiled.apply 2023-08-16 15:03:43.106 root: INFO: instruction count: 9: __C279Compiled.setPartitionIndex 2023-08-16 15:03:43.106 root: INFO: instruction count: 4: __C279Compiled.addPartitionRegion 2023-08-16 15:03:43.106 root: INFO: instruction count: 4: __C279Compiled.setPool 2023-08-16 15:03:43.106 root: INFO: instruction count: 3: __C279Compiled.addHailClassLoader 2023-08-16 15:03:43.106 root: INFO: instruction count: 3: __C279Compiled.addFS 2023-08-16 15:03:44.271 root: INFO: repartitionNoShuffle - fast path, generated 1 partitions from 2 (dropped 49999 empty output parts) 2023-08-16 15:03:44.335 root: INFO: repartitionNoShuffle - fast path, generated 1 partitions from 2 (dropped 49999 empty output parts) 2023-08-16 15:03:44.352 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 39: (Let __iruid_2167 (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Descrip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"{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))) (I32 0)) (Let __iruid_2174 (Let global (Ref __iruid_2167) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} )))))) (MakeStruct (globals (Ref __iruid_2174)) (broadcastVals (MakeStruct (__iruid_2167 (Ref __iruid_2167)) (__iruid_2174 (Ref __iruid_2174)))) (contexts (ToArray (StreamMap __iruid_2180 (Let __iruid_2169 (ToArray (ToStream False (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ))) (StreamMap __iruid_2170 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_2171 (ToStream False (Ref __iruid_2170)) (ArrayRef -1 (Ref __iruid_2169) (Ref __iruid_2171)))))) (MakeStruct (context (Ref __iruid_2180))))))))) 2023-08-16 15:03:44.390 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 29: (Let __iruid_2194 (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) (Let __iruid_2195 (InsertFields (Ref __iruid_2194) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (MakeStruct (globals (Ref __iruid_2195)) (broadcastVals (MakeStruct (__iruid_2167 (Ref __iruid_2194)) (__iruid_2174 (Ref __iruid_2195)))) (contexts (ToArray (StreamMap __iruid_2196 (ToStream False (Literal Array[Array[Int32]] )) (MakeStruct (context (ToArray (StreamMap __iruid_2197 (ToStream False (Ref __iruid_2196)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_2197)))))))))))) 2023-08-16 15:03:44.401 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 29: (Let __iruid_2194 (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Descrip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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) (Let __iruid_2195 (InsertFields (Ref __iruid_2194) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (MakeStruct (globals (Ref __iruid_2195)) (broadcastVals (MakeStruct (__iruid_2167 (Ref __iruid_2194)) (__iruid_2174 (Ref __iruid_2195)))) (contexts (ToArray (StreamMap __iruid_2196 (ToStream False (Literal Array[Array[Int32]] )) (MakeStruct (context (ToArray (StreamMap __iruid_2197 (ToStream False (Ref __iruid_2196)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_2197)))))))))))) 2023-08-16 15:03:44.435 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 29: (Let __iruid_2206 (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Descrip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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) (Let __iruid_2207 (InsertFields (Ref __iruid_2206) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (MakeStruct (globals (Ref __iruid_2207)) (broadcastVals (MakeStruct (__iruid_2167 (Ref __iruid_2206)) (__iruid_2174 (Ref __iruid_2207)))) (contexts (ToArray (StreamMap __iruid_2208 (ToStream False (Literal Array[Array[Int32]] )) (MakeStruct (context (ToArray (StreamMap __iruid_2209 (ToStream False (Ref __iruid_2208)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_2209)))))))))))) 2023-08-16 15:03:44.544 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 29: (Let __iruid_2206 (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Descrip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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) (Let __iruid_2207 (InsertFields (Ref __iruid_2206) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (MakeStruct (globals (Ref __iruid_2207)) (broadcastVals (MakeStruct (__iruid_2167 (Ref __iruid_2206)) (__iruid_2174 (Ref __iruid_2207)))) (contexts (ToArray (StreamMap __iruid_2208 (ToStream False (Literal Array[Array[Int32]] )) (MakeStruct (context (ToArray (StreamMap __iruid_2209 (ToStream False (Ref __iruid_2208)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_2209)))))))))))) 2023-08-16 15:03:44.572 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 29: (Let __iruid_2218 (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64} 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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) (Let __iruid_2219 (InsertFields (Ref __iruid_2218) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (MakeStruct (globals (Ref __iruid_2219)) (broadcastVals (MakeStruct (__iruid_2167 (Ref __iruid_2218)) (__iruid_2174 (Ref __iruid_2219)))) (contexts (ToArray (StreamMap __iruid_2220 (ToStream False (Literal Array[Array[Int32]] )) (MakeStruct (context (ToArray (StreamMap __iruid_2221 (ToStream False (Ref __iruid_2220)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_2221)))))))))))) 2023-08-16 15:03:45.157 root: INFO: encoder cache miss (1 hits, 4 misses, 0.200) 2023-08-16 15:03:45.167 root: INFO: instruction count: 3: __C479HailClassLoaderContainer. 2023-08-16 15:03:45.167 root: INFO: instruction count: 3: __C479HailClassLoaderContainer. 2023-08-16 15:03:45.168 root: INFO: instruction count: 3: __C480FSContainer. 2023-08-16 15:03:45.168 root: INFO: instruction count: 3: __C480FSContainer. 2023-08-16 15:03:45.171 root: INFO: instruction count: 3: __C481etypeEncode. 2023-08-16 15:03:45.171 root: INFO: instruction count: 7: __C481etypeEncode.apply 2023-08-16 15:03:45.171 root: INFO: instruction count: 65: __C481etypeEncode.__m482ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_struct_of_r_int64ANDr_binaryENDANDr_array_of_r_array_of_r_int32ANDr_struct_of_r_int64ANDr_binaryENDEND 2023-08-16 15:03:45.172 root: INFO: instruction count: 35: __C481etypeEncode.__m483ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND 2023-08-16 15:03:45.172 root: INFO: instruction count: 75: __C481etypeEncode.__m484ENCODE_SBaseStructPointer_TO_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND 2023-08-16 15:03:45.172 root: INFO: instruction count: 4: __C481etypeEncode.__m485ENCODE_SInt64$_TO_r_int64 2023-08-16 15:03:45.172 root: INFO: instruction count: 16: __C481etypeEncode.__m486ENCODE_SStringPointer_TO_r_binary 2023-08-16 15:03:45.172 root: INFO: instruction count: 41: __C481etypeEncode.__m487ENCODE_SIntervalPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolEND 2023-08-16 15:03:45.172 root: INFO: instruction count: 21: __C481etypeEncode.__m488ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32END 2023-08-16 15:03:45.172 root: INFO: instruction count: 74: __C481etypeEncode.__m489ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryEND 2023-08-16 15:03:45.173 root: INFO: instruction count: 25: __C481etypeEncode.__m490ENCODE_SCanonicalLocusPointer_TO_r_struct_of_r_binaryANDr_int32END 2023-08-16 15:03:45.173 root: INFO: instruction count: 4: __C481etypeEncode.__m491ENCODE_SInt32$_TO_r_int32 2023-08-16 15:03:45.173 root: INFO: instruction count: 39: __C481etypeEncode.__m492ENCODE_SIndexablePointer_TO_o_array_of_r_binary 2023-08-16 15:03:45.173 root: INFO: instruction count: 4: __C481etypeEncode.__m493ENCODE_SBoolean$_TO_r_bool 2023-08-16 15:03:45.173 root: INFO: instruction count: 25: __C481etypeEncode.__m494ENCODE_SBaseStructPointer_TO_r_struct_of_r_int64ANDr_binaryEND 2023-08-16 15:03:45.173 root: INFO: instruction count: 51: __C481etypeEncode.__m495ENCODE_SIndexablePointer_TO_r_array_of_r_array_of_r_int32 2023-08-16 15:03:45.173 root: INFO: instruction count: 39: __C481etypeEncode.__m496ENCODE_SIndexablePointer_TO_r_array_of_r_int32 2023-08-16 15:03:45.177 MemoryStore: INFO: Block broadcast_3 stored as values in memory (estimated size 1520.0 B, free 22.0 GiB) 2023-08-16 15:03:45.179 MemoryStore: INFO: Block broadcast_3_piece0 stored as bytes in memory (estimated size 349.0 B, free 22.0 GiB) 2023-08-16 15:03:45.180 BlockManagerInfo: INFO: Added broadcast_3_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 349.0 B, free: 22.0 GiB) 2023-08-16 15:03:45.181 SparkContext: INFO: Created broadcast 3 from broadcast at SparkBackend.scala:342 2023-08-16 15:03:45.182 root: INFO: instruction count: 3: __C287HailClassLoaderContainer. 2023-08-16 15:03:45.182 root: INFO: instruction count: 3: __C287HailClassLoaderContainer. 2023-08-16 15:03:45.182 root: INFO: instruction count: 3: __C288FSContainer. 2023-08-16 15:03:45.182 root: INFO: instruction count: 3: __C288FSContainer. 2023-08-16 15:03:45.415 root: INFO: instruction count: 3: __C289Compiled. 2023-08-16 15:03:45.417 root: INFO: instruction count: 335: __C289Compiled.apply 2023-08-16 15:03:45.418 root: INFO: instruction count: 127: __C289Compiled.__m290split_ToArray 2023-08-16 15:03:45.419 root: INFO: instruction count: 189: __C289Compiled.__m298DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_s 2023-08-16 15:03:45.419 root: INFO: instruction count: 152: __C289Compiled.__m299INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_set_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.420 root: INFO: instruction count: 17: __C289Compiled.__m300INPLACE_DECODE_r_struct_of_r_binaryEND_TO_r_struct_of_r_stringEND 2023-08-16 15:03:45.420 root: INFO: instruction count: 31: __C289Compiled.__m301INPLACE_DECODE_r_binary_TO_r_string 2023-08-16 15:03:45.420 root: INFO: instruction count: 26: __C289Compiled.__m302INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.420 root: INFO: instruction count: 44: __C289Compiled.__m303INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.421 root: INFO: instruction count: 26: __C289Compiled.__m304INPLACE_DECODE_r_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_set_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.421 root: INFO: instruction count: 58: __C289Compiled.__m305INPLACE_DECODE_r_array_of_r_binary_TO_r_set_of_r_string 2023-08-16 15:03:45.422 root: INFO: instruction count: 62: __C289Compiled.__m306INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.422 root: INFO: instruction count: 26: __C289Compiled.__m307INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.422 root: INFO: instruction count: 26: __C289Compiled.__m308INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.422 root: INFO: instruction count: 116: __C289Compiled.__m309INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDA 2023-08-16 15:03:45.423 root: INFO: instruction count: 26: __C289Compiled.__m310INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.423 root: INFO: instruction count: 80: __C289Compiled.__m311INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.423 root: INFO: instruction count: 26: __C289Compiled.__m312INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.423 root: INFO: instruction count: 116: __C289Compiled.__m313INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.424 root: INFO: instruction count: 26: __C289Compiled.__m314INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.424 root: INFO: instruction count: 116: __C289Compiled.__m315INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.424 root: INFO: instruction count: 26: __C289Compiled.__m316INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.424 root: INFO: instruction count: 116: __C289Compiled.__m317INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.425 root: INFO: instruction count: 26: __C289Compiled.__m318INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_tuple_of_r_stringENDANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.425 root: INFO: instruction count: 17: __C289Compiled.__m319INPLACE_DECODE_r_struct_of_r_binaryEND_TO_r_tuple_of_r_stringEND 2023-08-16 15:03:45.425 root: INFO: instruction count: 80: __C289Compiled.__m320INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.425 root: INFO: instruction count: 26: __C289Compiled.__m321INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.425 root: INFO: instruction count: 44: __C289Compiled.__m322INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.426 root: INFO: instruction count: 26: __C289Compiled.__m323INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.426 root: INFO: instruction count: 26: __C289Compiled.__m324INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.426 root: INFO: instruction count: 26: __C289Compiled.__m325INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.426 root: INFO: instruction count: 53: __C289Compiled.__m326INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.426 root: INFO: instruction count: 26: __C289Compiled.__m327INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.427 root: INFO: instruction count: 98: __C289Compiled.__m328INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.427 root: INFO: instruction count: 26: __C289Compiled.__m329INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.427 root: INFO: instruction count: 26: __C289Compiled.__m330INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.427 root: INFO: instruction count: 26: __C289Compiled.__m331INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.427 root: INFO: instruction count: 35: __C289Compiled.__m332INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.428 root: INFO: instruction count: 35: __C289Compiled.__m333INPLACE_DECODE_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ENDANDr_float64END_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ENDANDr_float64END 2023-08-16 15:03:45.428 root: INFO: instruction count: 44: __C289Compiled.__m334INPLACE_DECODE_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:45.428 root: INFO: instruction count: 10: __C289Compiled.__m335INPLACE_DECODE_r_float64_TO_r_float64 2023-08-16 15:03:45.428 root: INFO: instruction count: 35: __C289Compiled.__m336INPLACE_DECODE_r_struct_of_r_float64ANDr_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:45.428 root: INFO: instruction count: 26: __C289Compiled.__m337INPLACE_DECODE_r_struct_of_r_int32ANDr_float64END_TO_r_struct_of_r_int32ANDr_float64END 2023-08-16 15:03:45.428 root: INFO: instruction count: 10: __C289Compiled.__m338INPLACE_DECODE_r_int32_TO_r_int32 2023-08-16 15:03:45.429 root: INFO: instruction count: 80: __C289Compiled.__m339INPLACE_DECODE_r_struct_of_r_int32ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END_TO_r_struct_of_r_int32ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:45.429 root: INFO: instruction count: 44: __C289Compiled.__m340INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDENDANDr_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float6 2023-08-16 15:03:45.429 root: INFO: instruction count: 89: __C289Compiled.__m341INPLACE_DECODE_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDEND_TO_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_st 2023-08-16 15:03:45.429 root: INFO: instruction count: 98: __C289Compiled.__m342INPLACE_DECODE_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:45.430 root: INFO: instruction count: 58: __C289Compiled.__m343INPLACE_DECODE_r_array_of_r_float64_TO_r_array_of_r_float64 2023-08-16 15:03:45.430 root: INFO: instruction count: 89: __C289Compiled.__m344INPLACE_DECODE_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDEND_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDEND 2023-08-16 15:03:45.430 root: INFO: instruction count: 44: __C289Compiled.__m345INPLACE_DECODE_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:45.430 root: INFO: instruction count: 10: __C289Compiled.__m346INPLACE_DECODE_r_bool_TO_r_bool 2023-08-16 15:03:45.431 root: INFO: instruction count: 44: __C289Compiled.__m347INPLACE_DECODE_r_struct_of_r_array_of_r_float64ANDr_array_of_r_int32ANDr_int32ANDr_int32END_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_int32ANDr_int32ANDr_int32END 2023-08-16 15:03:45.431 root: INFO: instruction count: 58: __C289Compiled.__m348INPLACE_DECODE_r_array_of_r_int32_TO_r_array_of_r_int32 2023-08-16 15:03:45.431 root: INFO: instruction count: 242: __C289Compiled.__m349INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryA 2023-08-16 15:03:45.432 root: INFO: instruction count: 26: __C289Compiled.__m350INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.432 root: INFO: instruction count: 44: __C289Compiled.__m351INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.432 root: INFO: instruction count: 26: __C289Compiled.__m352INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.432 root: INFO: instruction count: 62: __C289Compiled.__m353INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.432 root: INFO: instruction count: 26: __C289Compiled.__m354INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.432 root: INFO: instruction count: 26: __C289Compiled.__m355INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.433 root: INFO: instruction count: 26: __C289Compiled.__m356INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDENDEND 2023-08-16 15:03:45.433 root: INFO: instruction count: 53: __C289Compiled.__m357INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDEND_TO_r_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDEND 2023-08-16 15:03:45.433 root: INFO: instruction count: 26: __C289Compiled.__m358INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.433 root: INFO: instruction count: 26: __C289Compiled.__m359INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.433 root: INFO: instruction count: 224: __C289Compiled.__m360INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.434 root: INFO: instruction count: 26: __C289Compiled.__m361INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.434 root: INFO: instruction count: 44: __C289Compiled.__m362INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.434 root: INFO: instruction count: 26: __C289Compiled.__m363INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.434 root: INFO: instruction count: 26: __C289Compiled.__m364INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.434 root: INFO: instruction count: 26: __C289Compiled.__m365INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.434 root: INFO: instruction count: 35: __C289Compiled.__m366INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.435 root: INFO: instruction count: 17: __C289Compiled.__m367INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.435 root: INFO: instruction count: 35: __C289Compiled.__m368INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.435 root: INFO: instruction count: 26: __C289Compiled.__m369INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.435 root: INFO: instruction count: 26: __C289Compiled.__m370INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.435 root: INFO: instruction count: 17: __C289Compiled.__m371INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.435 root: INFO: instruction count: 35: __C289Compiled.__m372INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.436 root: INFO: instruction count: 17: __C289Compiled.__m373INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:45.436 root: INFO: instruction count: 26: __C289Compiled.__m374INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:45.436 root: INFO: instruction count: 58: __C289Compiled.__m375INPLACE_DECODE_r_array_of_r_array_of_r_struct_of_r_binaryANDr_binaryEND_TO_r_array_of_r_dict_of_r_stringANDr_string 2023-08-16 15:03:45.436 root: INFO: instruction count: 58: __C289Compiled.__m376INPLACE_DECODE_r_array_of_r_struct_of_r_binaryANDr_binaryEND_TO_r_dict_of_r_stringANDr_string 2023-08-16 15:03:45.436 root: INFO: instruction count: 26: __C289Compiled.__m377INPLACE_DECODE_r_struct_of_r_binaryANDr_binaryEND_TO_r_struct_of_r_stringANDr_stringEND 2023-08-16 15:03:45.437 root: INFO: instruction count: 58: __C289Compiled.__m378INPLACE_DECODE_r_array_of_r_struct_of_r_binaryANDr_int32END_TO_r_dict_of_r_stringANDr_int32 2023-08-16 15:03:45.437 root: INFO: instruction count: 26: __C289Compiled.__m379INPLACE_DECODE_r_struct_of_r_binaryANDr_int32END_TO_r_struct_of_r_stringANDr_int32END 2023-08-16 15:03:45.437 root: INFO: instruction count: 62: __C289Compiled.__m380INPLACE_DECODE_r_struct_of_r_binaryANDr_binaryANDr_struct_of_r_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ENDANDr_array_of_r_binaryANDr_array_of_r_binaryEND_TO_r_struct_of_r_stringANDr_stringANDr_struct_of_r_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ENDANDr_array_of_r_stringANDr_array_of_r_stringEND 2023-08-16 15:03:45.437 root: INFO: instruction count: 26: __C289Compiled.__m381INPLACE_DECODE_r_struct_of_r_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64END 2023-08-16 15:03:45.437 root: INFO: instruction count: 58: __C289Compiled.__m382INPLACE_DECODE_r_array_of_r_binary_TO_r_array_of_r_string 2023-08-16 15:03:45.438 root: INFO: instruction count: 12: __C289Compiled.__m385setup_jab 2023-08-16 15:03:45.438 root: INFO: instruction count: 35: __C289Compiled.__m390arrayref_bounds_check 2023-08-16 15:03:45.439 root: INFO: instruction count: 332: __C289Compiled.__m392split_ToArray 2023-08-16 15:03:45.440 root: INFO: instruction count: 192: __C289Compiled.__m400DECODE_r_struct_of_r_binaryANDo_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_int64ANDr_int64ANDr_int64ANDr_int64ANDo_int64ANDr_int64ANDo_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_float32ANDo_float32ANDo_float32ANDo_float32ANDo_float32ANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_int64ANDo_float64ANDo_int64ENDANDo_struct_of_o_array_of_o_float64ANDo_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_array_of_r_binaryANDo_boolANDo_boolANDo_array_of_o_binaryENDANDo_boolANDo_boolANDo_struct_of_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDr_boolENDANDo_struct_of_o_binaryANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_float64ANDo_struct_of_o_binaryANDo_binaryENDANDo_array_of_o_float64ANDr_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolENDANDo_binaryENDANDo_boolEND_TO_SBaseStructPointer 2023-08-16 15:03:45.440 root: INFO: instruction count: 125: __C289Compiled.__m401SKIP_o_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:45.441 root: INFO: instruction count: 3: __C289Compiled.__m402SKIP_o_float64 2023-08-16 15:03:45.441 root: INFO: instruction count: 141: __C289Compiled.__m403SKIP_o_struct_of_o_int64ANDr_int64ANDr_int64ANDr_int64ANDo_int64ANDr_int64ANDo_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:45.441 root: INFO: instruction count: 3: __C289Compiled.__m404SKIP_o_int64 2023-08-16 15:03:45.441 root: INFO: instruction count: 3: __C289Compiled.__m405SKIP_r_int64 2023-08-16 15:03:45.442 root: INFO: instruction count: 186: __C289Compiled.__m406SKIP_o_struct_of_o_float32ANDo_float32ANDo_float32ANDo_float32ANDo_float32ANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_int64ANDo_float64ANDo_int64END 2023-08-16 15:03:45.442 root: INFO: instruction count: 3: __C289Compiled.__m407SKIP_o_float32 2023-08-16 15:03:45.442 root: INFO: instruction count: 7: __C289Compiled.__m408SKIP_o_binary 2023-08-16 15:03:45.443 root: INFO: instruction count: 186: __C289Compiled.__m409SKIP_o_struct_of_o_array_of_o_float64ANDo_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:45.443 root: INFO: instruction count: 51: __C289Compiled.__m410SKIP_o_array_of_o_float64 2023-08-16 15:03:45.444 root: INFO: instruction count: 125: __C289Compiled.__m411SKIP_o_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:45.444 root: INFO: instruction count: 73: __C289Compiled.__m412SKIP_o_struct_of_o_array_of_r_binaryANDo_boolANDo_boolANDo_array_of_o_binaryEND 2023-08-16 15:03:45.444 root: INFO: instruction count: 22: __C289Compiled.__m413SKIP_o_array_of_r_binary 2023-08-16 15:03:45.444 root: INFO: instruction count: 7: __C289Compiled.__m414SKIP_r_binary 2023-08-16 15:03:45.444 root: INFO: instruction count: 3: __C289Compiled.__m415SKIP_o_bool 2023-08-16 15:03:45.445 root: INFO: instruction count: 51: __C289Compiled.__m416SKIP_o_array_of_o_binary 2023-08-16 15:03:45.445 root: INFO: instruction count: 16: __C289Compiled.__m417SKIP_o_struct_of_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDr_boolEND 2023-08-16 15:03:45.445 root: INFO: instruction count: 22: __C289Compiled.__m418SKIP_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:45.445 root: INFO: instruction count: 86: __C289Compiled.__m419SKIP_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:45.445 root: INFO: instruction count: 3: __C289Compiled.__m420SKIP_r_bool 2023-08-16 15:03:45.446 root: INFO: instruction count: 151: __C289Compiled.__m421SKIP_o_struct_of_o_binaryANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_float64ANDo_struct_of_o_binaryANDo_binaryENDANDo_array_of_o_float64ANDr_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolENDANDo_binaryEND 2023-08-16 15:03:45.446 root: INFO: instruction count: 47: __C289Compiled.__m422SKIP_o_struct_of_o_binaryANDo_binaryEND 2023-08-16 15:03:45.446 root: INFO: instruction count: 60: __C289Compiled.__m423SKIP_r_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolEND 2023-08-16 15:03:45.447 root: INFO: instruction count: 12: __C289Compiled.__m426setup_jab 2023-08-16 15:03:45.447 root: INFO: instruction count: 173: __C289Compiled.__m435split_ToArray 2023-08-16 15:03:45.447 root: INFO: instruction count: 161: __C289Compiled.__m448split_ToArray 2023-08-16 15:03:45.448 root: INFO: instruction count: 9: __C289Compiled.setPartitionIndex 2023-08-16 15:03:45.448 root: INFO: instruction count: 4: __C289Compiled.addPartitionRegion 2023-08-16 15:03:45.448 root: INFO: instruction count: 4: __C289Compiled.setPool 2023-08-16 15:03:45.448 root: INFO: instruction count: 3: __C289Compiled.addHailClassLoader 2023-08-16 15:03:45.448 root: INFO: instruction count: 3: __C289Compiled.addFS 2023-08-16 15:03:45.449 root: INFO: instruction count: 96: __C289Compiled.addLiterals 2023-08-16 15:03:45.449 root: INFO: instruction count: 54: __C289Compiled.__m468DECODE_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_struct_of_r_int64ANDr_binaryENDANDr_array_of_r_array_of_r_int32ANDr_struct_of_r_int64ANDr_binaryENDEND_TO_SBaseStructPointer 2023-08-16 15:03:45.449 root: INFO: instruction count: 58: __C289Compiled.__m469INPLACE_DECODE_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND_TO_r_array_of_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDEND 2023-08-16 15:03:45.449 root: INFO: instruction count: 53: __C289Compiled.__m470INPLACE_DECODE_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND_TO_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDEND 2023-08-16 15:03:45.449 root: INFO: instruction count: 10: __C289Compiled.__m471INPLACE_DECODE_r_int64_TO_r_int64 2023-08-16 15:03:45.450 root: INFO: instruction count: 44: __C289Compiled.__m472INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolEND_TO_r_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32END 2023-08-16 15:03:45.450 root: INFO: instruction count: 26: __C289Compiled.__m473INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32END_TO_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32END 2023-08-16 15:03:45.450 root: INFO: instruction count: 57: __C289Compiled.__m474INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryEND_TO_r_struct_of_r_locusANDo_array_of_r_stringEND 2023-08-16 15:03:45.450 root: INFO: instruction count: 26: __C289Compiled.__m475INPLACE_DECODE_r_struct_of_r_binaryANDr_int32END_TO_r_locus 2023-08-16 15:03:45.450 root: INFO: instruction count: 58: __C289Compiled.__m476INPLACE_DECODE_o_array_of_r_binary_TO_o_array_of_r_string 2023-08-16 15:03:45.451 root: INFO: instruction count: 26: __C289Compiled.__m477INPLACE_DECODE_r_struct_of_r_int64ANDr_binaryEND_TO_r_struct_of_r_int64ANDr_stringEND 2023-08-16 15:03:45.451 root: INFO: instruction count: 58: __C289Compiled.__m478INPLACE_DECODE_r_array_of_r_array_of_r_int32_TO_r_array_of_r_array_of_r_int32 2023-08-16 15:03:45.452 root: INFO: instruction count: 526: __C289Compiled.apply_region0_0 2023-08-16 15:03:45.452 root: INFO: instruction count: 517: __C289Compiled.__m290split_ToArray_region28_28 2023-08-16 15:03:45.453 root: INFO: instruction count: 526: __C289Compiled.__m290split_ToArray_region29_29 2023-08-16 15:03:45.454 root: INFO: instruction count: 521: __C289Compiled.__m290split_ToArray_region31_31 2023-08-16 15:03:45.455 root: INFO: instruction count: 528: __C289Compiled.__m290split_ToArray_region33_33 2023-08-16 15:03:45.456 root: INFO: instruction count: 523: __C289Compiled.__m290split_ToArray_region35_35 2023-08-16 15:03:45.456 root: INFO: instruction count: 515: __C289Compiled.__m290split_ToArray_region37_37 2023-08-16 15:03:45.457 root: INFO: instruction count: 518: __C289Compiled.__m290split_ToArray_region39_39 2023-08-16 15:03:45.458 root: INFO: instruction count: 515: __C289Compiled.__m290split_ToArray_region41_41 2023-08-16 15:03:45.458 root: INFO: instruction count: 518: __C289Compiled.__m290split_ToArray_region43_43 2023-08-16 15:03:45.459 root: INFO: instruction count: 525: __C289Compiled.__m290split_ToArray_region45_45 2023-08-16 15:03:45.460 root: INFO: instruction count: 514: __C289Compiled.__m290split_ToArray_region47_47 2023-08-16 15:03:45.460 root: INFO: instruction count: 515: __C289Compiled.__m290split_ToArray_region49_49 2023-08-16 15:03:45.461 root: INFO: instruction count: 511: __C289Compiled.__m290split_ToArray_region51_51 2023-08-16 15:03:45.461 root: INFO: instruction count: 514: __C289Compiled.__m290split_ToArray_region53_53 2023-08-16 15:03:45.462 root: INFO: instruction count: 516: __C289Compiled.__m290split_ToArray_region55_55 2023-08-16 15:03:45.463 root: INFO: instruction count: 513: __C289Compiled.__m290split_ToArray_region57_57 2023-08-16 15:03:45.463 root: INFO: instruction count: 519: __C289Compiled.__m290split_ToArray_region59_59 2023-08-16 15:03:45.464 root: INFO: instruction count: 524: __C289Compiled.__m290split_ToArray_region61_61 2023-08-16 15:03:45.465 root: INFO: instruction count: 518: __C289Compiled.__m290split_ToArray_region63_63 2023-08-16 15:03:45.466 root: INFO: instruction count: 518: __C289Compiled.__m290split_ToArray_region65_65 2023-08-16 15:03:45.466 root: INFO: instruction count: 517: __C289Compiled.__m290split_ToArray_region67_67 2023-08-16 15:03:45.467 root: INFO: instruction count: 513: __C289Compiled.__m290split_ToArray_region69_69 2023-08-16 15:03:45.468 root: INFO: instruction count: 512: __C289Compiled.__m290split_ToArray_region71_71 2023-08-16 15:03:45.468 root: INFO: instruction count: 524: __C289Compiled.__m290split_ToArray_region73_73 2023-08-16 15:03:45.469 root: INFO: instruction count: 521: __C289Compiled.__m290split_ToArray_region75_75 2023-08-16 15:03:45.469 root: INFO: instruction count: 526: __C289Compiled.__m290split_ToArray_region77_77 2023-08-16 15:03:45.470 root: INFO: instruction count: 525: __C289Compiled.__m290split_ToArray_region79_79 2023-08-16 15:03:45.470 root: INFO: instruction count: 523: __C289Compiled.__m290split_ToArray_region81_81 2023-08-16 15:03:45.471 root: INFO: instruction count: 528: __C289Compiled.__m290split_ToArray_region83_83 2023-08-16 15:03:45.472 root: INFO: instruction count: 520: __C289Compiled.__m290split_ToArray_region85_85 2023-08-16 15:03:45.472 root: INFO: instruction count: 518: __C289Compiled.__m290split_ToArray_region87_87 2023-08-16 15:03:45.473 root: INFO: instruction count: 513: __C289Compiled.__m290split_ToArray_region89_89 2023-08-16 15:03:45.474 root: INFO: instruction count: 520: __C289Compiled.__m290split_ToArray_region91_91 2023-08-16 15:03:45.475 root: INFO: instruction count: 519: __C289Compiled.__m290split_ToArray_region93_93 2023-08-16 15:03:45.475 root: INFO: instruction count: 519: __C289Compiled.__m290split_ToArray_region23_24 2023-08-16 15:03:45.476 root: INFO: instruction count: 499: __C289Compiled.__m290split_ToArray_region92_95 2023-08-16 15:03:45.477 root: INFO: instruction count: 264: __C289Compiled.__m290split_ToArray_region104_109 2023-08-16 15:03:45.477 root: INFO: instruction count: 264: __C289Compiled.__m290split_ToArray_region96_101 2023-08-16 15:03:45.478 root: INFO: instruction count: 657: __C289Compiled.__m290split_ToArray_region6_22 2023-08-16 15:03:45.481 root: INFO: instruction count: 1396: __C289Compiled.__m290split_ToArray_region6_132 2023-08-16 15:03:45.483 root: INFO: instruction count: 3: __C498applySpills. 2023-08-16 15:03:45.483 root: INFO: instruction count: 3: __C535__m290split_ToArraySpills. 2023-08-16 15:03:45.621 root: INFO: RegionPool: REPORT_THRESHOLD: 256.0K allocated (192.0K blocks / 64.0K chunks), regions.size = 2, 0 current java objects, thread 16: Thread-4 2023-08-16 15:03:45.758 root: INFO: encoder cache miss (1 hits, 5 misses, 0.167) 2023-08-16 15:03:45.977 root: INFO: instruction count: 3: __C707HailClassLoaderContainer. 2023-08-16 15:03:45.977 root: INFO: instruction count: 3: __C707HailClassLoaderContainer. 2023-08-16 15:03:45.977 root: INFO: instruction count: 3: __C708FSContainer. 2023-08-16 15:03:45.978 root: INFO: instruction count: 3: __C708FSContainer. 2023-08-16 15:03:45.998 root: INFO: instruction count: 3: __C709etypeEncode. 2023-08-16 15:03:45.999 root: INFO: instruction count: 7: __C709etypeEncode.apply 2023-08-16 15:03:45.999 root: INFO: instruction count: 17: __C709etypeEncode.__m710ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryE 2023-08-16 15:03:45.999 root: INFO: instruction count: 265: __C709etypeEncode.__m711ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struc 2023-08-16 15:03:46.000 root: INFO: instruction count: 129: __C709etypeEncode.__m712ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.000 root: INFO: instruction count: 13: __C709etypeEncode.__m713ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryEND 2023-08-16 15:03:46.000 root: INFO: instruction count: 16: __C709etypeEncode.__m714ENCODE_SStringPointer_TO_r_binary 2023-08-16 15:03:46.000 root: INFO: instruction count: 21: __C709etypeEncode.__m715ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.000 root: INFO: instruction count: 33: __C709etypeEncode.__m716ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.000 root: INFO: instruction count: 33: __C709etypeEncode.__m717ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.000 root: INFO: instruction count: 39: __C709etypeEncode.__m718ENCODE_SIndexablePointer_TO_r_array_of_r_binary 2023-08-16 15:03:46.001 root: INFO: instruction count: 49: __C709etypeEncode.__m719ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.001 root: INFO: instruction count: 21: __C709etypeEncode.__m720ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.001 root: INFO: instruction count: 17: __C709etypeEncode.__m721ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.001 root: INFO: instruction count: 97: __C709etypeEncode.__m722ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_o 2023-08-16 15:03:46.001 root: INFO: instruction count: 21: __C709etypeEncode.__m723ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.001 root: INFO: instruction count: 65: __C709etypeEncode.__m724ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.001 root: INFO: instruction count: 21: __C709etypeEncode.__m725ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.001 root: INFO: instruction count: 97: __C709etypeEncode.__m726ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.001 root: INFO: instruction count: 21: __C709etypeEncode.__m727ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.001 root: INFO: instruction count: 97: __C709etypeEncode.__m728ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.001 root: INFO: instruction count: 21: __C709etypeEncode.__m729ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 97: __C709etypeEncode.__m730ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 17: __C709etypeEncode.__m731ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 13: __C709etypeEncode.__m732ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 65: __C709etypeEncode.__m733ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 21: __C709etypeEncode.__m734ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 33: __C709etypeEncode.__m735ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 21: __C709etypeEncode.__m736ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 17: __C709etypeEncode.__m737ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 21: __C709etypeEncode.__m738ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 41: __C709etypeEncode.__m739ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 21: __C709etypeEncode.__m740ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 81: __C709etypeEncode.__m741ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.002 root: INFO: instruction count: 21: __C709etypeEncode.__m742ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.003 root: INFO: instruction count: 17: __C709etypeEncode.__m743ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.003 root: INFO: instruction count: 21: __C709etypeEncode.__m744ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.003 root: INFO: instruction count: 25: __C709etypeEncode.__m745ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.003 root: INFO: instruction count: 29: __C709etypeEncode.__m746ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ENDANDr_float64END 2023-08-16 15:03:46.003 root: INFO: instruction count: 49: __C709etypeEncode.__m747ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:46.003 root: INFO: instruction count: 4: __C709etypeEncode.__m748ENCODE_SFloat64$_TO_r_float64 2023-08-16 15:03:46.003 root: INFO: instruction count: 37: __C709etypeEncode.__m749ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:46.003 root: INFO: instruction count: 25: __C709etypeEncode.__m750ENCODE_SBaseStructPointer_TO_r_struct_of_r_int32ANDr_float64END 2023-08-16 15:03:46.003 root: INFO: instruction count: 4: __C709etypeEncode.__m751ENCODE_SInt32$_TO_r_int32 2023-08-16 15:03:46.003 root: INFO: instruction count: 97: __C709etypeEncode.__m752ENCODE_SBaseStructPointer_TO_r_struct_of_r_int32ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:46.003 root: INFO: instruction count: 41: __C709etypeEncode.__m753ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDENDANDr_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_floa 2023-08-16 15:03:46.003 root: INFO: instruction count: 73: __C709etypeEncode.__m754ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDEND 2023-08-16 15:03:46.004 root: INFO: instruction count: 169: __C709etypeEncode.__m755ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:46.004 root: INFO: instruction count: 39: __C709etypeEncode.__m756ENCODE_SIndexablePointer_TO_r_array_of_r_float64 2023-08-16 15:03:46.004 root: INFO: instruction count: 73: __C709etypeEncode.__m757ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDEND 2023-08-16 15:03:46.004 root: INFO: instruction count: 49: __C709etypeEncode.__m758ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:46.004 root: INFO: instruction count: 4: __C709etypeEncode.__m759ENCODE_SBoolean$_TO_r_bool 2023-08-16 15:03:46.004 root: INFO: instruction count: 73: __C709etypeEncode.__m760ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_int32ANDr_int32ANDr_int32END 2023-08-16 15:03:46.004 root: INFO: instruction count: 39: __C709etypeEncode.__m761ENCODE_SIndexablePointer_TO_r_array_of_r_int32 2023-08-16 15:03:46.004 root: INFO: instruction count: 209: __C709etypeEncode.__m762ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struc 2023-08-16 15:03:46.005 root: INFO: instruction count: 21: __C709etypeEncode.__m763ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.005 root: INFO: instruction count: 33: __C709etypeEncode.__m764ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.005 root: INFO: instruction count: 21: __C709etypeEncode.__m765ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.005 root: INFO: instruction count: 49: __C709etypeEncode.__m766ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.005 root: INFO: instruction count: 21: __C709etypeEncode.__m767ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.005 root: INFO: instruction count: 17: __C709etypeEncode.__m768ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.005 root: INFO: instruction count: 21: __C709etypeEncode.__m769ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDEND 2023-08-16 15:03:46.005 root: INFO: instruction count: 41: __C709etypeEncode.__m770ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDEND 2023-08-16 15:03:46.005 root: INFO: instruction count: 21: __C709etypeEncode.__m771ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.005 root: INFO: instruction count: 21: __C709etypeEncode.__m772ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.005 root: INFO: instruction count: 193: __C709etypeEncode.__m773ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 21: __C709etypeEncode.__m774ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 33: __C709etypeEncode.__m775ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 21: __C709etypeEncode.__m776ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 17: __C709etypeEncode.__m777ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 21: __C709etypeEncode.__m778ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 25: __C709etypeEncode.__m779ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 9: __C709etypeEncode.__m780ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 25: __C709etypeEncode.__m781ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 21: __C709etypeEncode.__m782ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 17: __C709etypeEncode.__m783ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 9: __C709etypeEncode.__m784ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 25: __C709etypeEncode.__m785ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 9: __C709etypeEncode.__m786ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:46.006 root: INFO: instruction count: 17: __C709etypeEncode.__m787ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:46.007 root: INFO: instruction count: 51: __C709etypeEncode.__m788ENCODE_SIndexablePointer_TO_r_array_of_r_array_of_r_struct_of_r_binaryANDr_binaryEND 2023-08-16 15:03:46.007 root: INFO: instruction count: 35: __C709etypeEncode.__m789ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_binaryANDr_binaryEND 2023-08-16 15:03:46.007 root: INFO: instruction count: 25: __C709etypeEncode.__m790ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_binaryEND 2023-08-16 15:03:46.007 root: INFO: instruction count: 35: __C709etypeEncode.__m791ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_binaryANDr_int32END 2023-08-16 15:03:46.007 root: INFO: instruction count: 25: __C709etypeEncode.__m792ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_int32END 2023-08-16 15:03:46.007 root: INFO: instruction count: 89: __C709etypeEncode.__m793ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_binaryANDr_struct_of_r_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ENDANDr_array_of_r_binaryANDr_array_of_r_binaryEND 2023-08-16 15:03:46.007 root: INFO: instruction count: 25: __C709etypeEncode.__m794ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64END 2023-08-16 15:03:46.007 root: INFO: instruction count: 39: __C709etypeEncode.__m795ENCODE_SIndexablePointer_TO_r_array_of_r_binary 2023-08-16 15:03:46.007 root: INFO: instruction count: 289: __C709etypeEncode.__m796ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struc 2023-08-16 15:03:46.008 root: INFO: instruction count: 35: __C709etypeEncode.__m797ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_binaryEND 2023-08-16 15:03:46.008 root: INFO: instruction count: 13: __C709etypeEncode.__m798ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryEND 2023-08-16 15:03:46.022 MemoryStore: INFO: Block broadcast_4 stored as values in memory (estimated size 63.4 KiB, free 22.0 GiB) 2023-08-16 15:03:46.023 MemoryStore: INFO: Block broadcast_4_piece0 stored as bytes in memory (estimated size 55.6 KiB, free 22.0 GiB) 2023-08-16 15:03:46.024 BlockManagerInfo: INFO: Added broadcast_4_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 55.6 KiB, free: 22.0 GiB) 2023-08-16 15:03:46.026 SparkContext: INFO: Created broadcast 4 from broadcast at RVDToTableStage.scala:64 2023-08-16 15:03:46.026 root: INFO: decoder cache miss (0 hits, 1 misses, 0.000 2023-08-16 15:03:46.684 root: INFO: instruction count: 3: __C799HailClassLoaderContainer. 2023-08-16 15:03:46.684 root: INFO: instruction count: 3: __C799HailClassLoaderContainer. 2023-08-16 15:03:46.684 root: INFO: instruction count: 3: __C800FSContainer. 2023-08-16 15:03:46.684 root: INFO: instruction count: 3: __C800FSContainer. 2023-08-16 15:03:46.698 root: INFO: instruction count: 3: __C801etypeDecode. 2023-08-16 15:03:46.699 root: INFO: instruction count: 7: __C801etypeDecode.apply 2023-08-16 15:03:46.699 root: INFO: instruction count: 36: __C801etypeDecode.__m802DECODE_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_bin 2023-08-16 15:03:46.699 root: INFO: instruction count: 179: __C801etypeDecode.__m803INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryE 2023-08-16 15:03:46.700 root: INFO: instruction count: 152: __C801etypeDecode.__m804INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_set_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.700 root: INFO: instruction count: 17: __C801etypeDecode.__m805INPLACE_DECODE_r_struct_of_r_binaryEND_TO_r_struct_of_r_stringEND 2023-08-16 15:03:46.700 root: INFO: instruction count: 31: __C801etypeDecode.__m806INPLACE_DECODE_r_binary_TO_r_string 2023-08-16 15:03:46.700 root: INFO: instruction count: 26: __C801etypeDecode.__m807INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.700 root: INFO: instruction count: 44: __C801etypeDecode.__m808INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.700 root: INFO: instruction count: 26: __C801etypeDecode.__m809INPLACE_DECODE_r_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_set_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.700 root: INFO: instruction count: 58: __C801etypeDecode.__m810INPLACE_DECODE_r_array_of_r_binary_TO_r_set_of_r_string 2023-08-16 15:03:46.700 root: INFO: instruction count: 62: __C801etypeDecode.__m811INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.700 root: INFO: instruction count: 26: __C801etypeDecode.__m812INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.700 root: INFO: instruction count: 26: __C801etypeDecode.__m813INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.701 root: INFO: instruction count: 116: __C801etypeDecode.__m814INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDA 2023-08-16 15:03:46.701 root: INFO: instruction count: 26: __C801etypeDecode.__m815INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.701 root: INFO: instruction count: 80: __C801etypeDecode.__m816INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.701 root: INFO: instruction count: 26: __C801etypeDecode.__m817INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.701 root: INFO: instruction count: 116: __C801etypeDecode.__m818INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.701 root: INFO: instruction count: 26: __C801etypeDecode.__m819INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.701 root: INFO: instruction count: 116: __C801etypeDecode.__m820INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.701 root: INFO: instruction count: 26: __C801etypeDecode.__m821INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.701 root: INFO: instruction count: 116: __C801etypeDecode.__m822INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 26: __C801etypeDecode.__m823INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_tuple_of_r_stringENDANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 17: __C801etypeDecode.__m824INPLACE_DECODE_r_struct_of_r_binaryEND_TO_r_tuple_of_r_stringEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 80: __C801etypeDecode.__m825INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 26: __C801etypeDecode.__m826INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 44: __C801etypeDecode.__m827INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 26: __C801etypeDecode.__m828INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 26: __C801etypeDecode.__m829INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 26: __C801etypeDecode.__m830INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 53: __C801etypeDecode.__m831INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 26: __C801etypeDecode.__m832INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 98: __C801etypeDecode.__m833INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 26: __C801etypeDecode.__m834INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 26: __C801etypeDecode.__m835INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 26: __C801etypeDecode.__m836INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.702 root: INFO: instruction count: 35: __C801etypeDecode.__m837INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.703 root: INFO: instruction count: 35: __C801etypeDecode.__m838INPLACE_DECODE_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ENDANDr_float64END_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ENDANDr_float64END 2023-08-16 15:03:46.703 root: INFO: instruction count: 44: __C801etypeDecode.__m839INPLACE_DECODE_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:46.703 root: INFO: instruction count: 10: __C801etypeDecode.__m840INPLACE_DECODE_r_float64_TO_r_float64 2023-08-16 15:03:46.703 root: INFO: instruction count: 35: __C801etypeDecode.__m841INPLACE_DECODE_r_struct_of_r_float64ANDr_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:46.703 root: INFO: instruction count: 26: __C801etypeDecode.__m842INPLACE_DECODE_r_struct_of_r_int32ANDr_float64END_TO_r_struct_of_r_int32ANDr_float64END 2023-08-16 15:03:46.703 root: INFO: instruction count: 10: __C801etypeDecode.__m843INPLACE_DECODE_r_int32_TO_r_int32 2023-08-16 15:03:46.703 root: INFO: instruction count: 80: __C801etypeDecode.__m844INPLACE_DECODE_r_struct_of_r_int32ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END_TO_r_struct_of_r_int32ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:46.703 root: INFO: instruction count: 44: __C801etypeDecode.__m845INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDENDANDr_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float6 2023-08-16 15:03:46.703 root: INFO: instruction count: 89: __C801etypeDecode.__m846INPLACE_DECODE_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDEND_TO_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_st 2023-08-16 15:03:46.703 root: INFO: instruction count: 98: __C801etypeDecode.__m847INPLACE_DECODE_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:46.703 root: INFO: instruction count: 58: __C801etypeDecode.__m848INPLACE_DECODE_r_array_of_r_float64_TO_r_array_of_r_float64 2023-08-16 15:03:46.704 root: INFO: instruction count: 89: __C801etypeDecode.__m849INPLACE_DECODE_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDEND_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDEND 2023-08-16 15:03:46.704 root: INFO: instruction count: 44: __C801etypeDecode.__m850INPLACE_DECODE_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:46.704 root: INFO: instruction count: 10: __C801etypeDecode.__m851INPLACE_DECODE_r_bool_TO_r_bool 2023-08-16 15:03:46.704 root: INFO: instruction count: 44: __C801etypeDecode.__m852INPLACE_DECODE_r_struct_of_r_array_of_r_float64ANDr_array_of_r_int32ANDr_int32ANDr_int32END_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_int32ANDr_int32ANDr_int32END 2023-08-16 15:03:46.704 root: INFO: instruction count: 58: __C801etypeDecode.__m853INPLACE_DECODE_r_array_of_r_int32_TO_r_array_of_r_int32 2023-08-16 15:03:46.704 root: INFO: instruction count: 242: __C801etypeDecode.__m854INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryA 2023-08-16 15:03:46.704 root: INFO: instruction count: 26: __C801etypeDecode.__m855INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.704 root: INFO: instruction count: 44: __C801etypeDecode.__m856INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.704 root: INFO: instruction count: 26: __C801etypeDecode.__m857INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 62: __C801etypeDecode.__m858INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 26: __C801etypeDecode.__m859INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 26: __C801etypeDecode.__m860INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 26: __C801etypeDecode.__m861INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 53: __C801etypeDecode.__m862INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDEND_TO_r_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 26: __C801etypeDecode.__m863INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 26: __C801etypeDecode.__m864INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 224: __C801etypeDecode.__m865INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 26: __C801etypeDecode.__m866INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 44: __C801etypeDecode.__m867INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 26: __C801etypeDecode.__m868INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 26: __C801etypeDecode.__m869INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.705 root: INFO: instruction count: 26: __C801etypeDecode.__m870INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 35: __C801etypeDecode.__m871INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 17: __C801etypeDecode.__m872INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 35: __C801etypeDecode.__m873INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 26: __C801etypeDecode.__m874INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 26: __C801etypeDecode.__m875INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 17: __C801etypeDecode.__m876INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 35: __C801etypeDecode.__m877INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 17: __C801etypeDecode.__m878INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 26: __C801etypeDecode.__m879INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 58: __C801etypeDecode.__m880INPLACE_DECODE_r_array_of_r_array_of_r_struct_of_r_binaryANDr_binaryEND_TO_r_array_of_r_dict_of_r_stringANDr_string 2023-08-16 15:03:46.706 root: INFO: instruction count: 58: __C801etypeDecode.__m881INPLACE_DECODE_r_array_of_r_struct_of_r_binaryANDr_binaryEND_TO_r_dict_of_r_stringANDr_string 2023-08-16 15:03:46.706 root: INFO: instruction count: 26: __C801etypeDecode.__m882INPLACE_DECODE_r_struct_of_r_binaryANDr_binaryEND_TO_r_struct_of_r_stringANDr_stringEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 58: __C801etypeDecode.__m883INPLACE_DECODE_r_array_of_r_struct_of_r_binaryANDr_int32END_TO_r_dict_of_r_stringANDr_int32 2023-08-16 15:03:46.706 root: INFO: instruction count: 26: __C801etypeDecode.__m884INPLACE_DECODE_r_struct_of_r_binaryANDr_int32END_TO_r_struct_of_r_stringANDr_int32END 2023-08-16 15:03:46.706 root: INFO: instruction count: 62: __C801etypeDecode.__m885INPLACE_DECODE_r_struct_of_r_binaryANDr_binaryANDr_struct_of_r_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ENDANDr_array_of_r_binaryANDr_array_of_r_binaryEND_TO_r_struct_of_r_stringANDr_stringANDr_struct_of_r_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ENDANDr_array_of_r_stringANDr_array_of_r_stringEND 2023-08-16 15:03:46.706 root: INFO: instruction count: 26: __C801etypeDecode.__m886INPLACE_DECODE_r_struct_of_r_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64END 2023-08-16 15:03:46.707 root: INFO: instruction count: 58: __C801etypeDecode.__m887INPLACE_DECODE_r_array_of_r_binary_TO_r_array_of_r_string 2023-08-16 15:03:46.707 root: INFO: instruction count: 188: __C801etypeDecode.__m888INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryE 2023-08-16 15:03:46.707 root: INFO: instruction count: 58: __C801etypeDecode.__m889INPLACE_DECODE_r_array_of_r_struct_of_r_binaryEND_TO_r_array_of_r_struct_of_r_stringEND 2023-08-16 15:03:46.707 root: INFO: instruction count: 17: __C801etypeDecode.__m890INPLACE_DECODE_r_struct_of_r_binaryEND_TO_r_struct_of_r_stringEND 2023-08-16 15:03:46.710 root: INFO: decoder cache miss (0 hits, 2 misses, 0.000 2023-08-16 15:03:46.714 root: INFO: instruction count: 3: __C891HailClassLoaderContainer. 2023-08-16 15:03:46.715 root: INFO: instruction count: 3: __C891HailClassLoaderContainer. 2023-08-16 15:03:46.715 root: INFO: instruction count: 3: __C892FSContainer. 2023-08-16 15:03:46.715 root: INFO: instruction count: 3: __C892FSContainer. 2023-08-16 15:03:46.716 root: INFO: instruction count: 3: __C893etypeDecode. 2023-08-16 15:03:46.716 root: INFO: instruction count: 7: __C893etypeDecode.apply 2023-08-16 15:03:46.716 root: INFO: instruction count: 27: __C893etypeDecode.__m894DECODE_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDEND_TO_SBaseStructPointer 2023-08-16 15:03:46.717 root: INFO: instruction count: 58: __C893etypeDecode.__m895INPLACE_DECODE_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND_TO_r_array_of_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDEND 2023-08-16 15:03:46.717 root: INFO: instruction count: 53: __C893etypeDecode.__m896INPLACE_DECODE_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND_TO_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDEND 2023-08-16 15:03:46.717 root: INFO: instruction count: 10: __C893etypeDecode.__m897INPLACE_DECODE_r_int64_TO_r_int64 2023-08-16 15:03:46.717 root: INFO: instruction count: 31: __C893etypeDecode.__m898INPLACE_DECODE_r_binary_TO_r_string 2023-08-16 15:03:46.717 root: INFO: instruction count: 44: __C893etypeDecode.__m899INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolEND_TO_r_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32END 2023-08-16 15:03:46.717 root: INFO: instruction count: 26: __C893etypeDecode.__m900INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32END_TO_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32END 2023-08-16 15:03:46.717 root: INFO: instruction count: 57: __C893etypeDecode.__m901INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryEND_TO_r_struct_of_r_locusANDo_array_of_r_stringEND 2023-08-16 15:03:46.717 root: INFO: instruction count: 26: __C893etypeDecode.__m902INPLACE_DECODE_r_struct_of_r_binaryANDr_int32END_TO_r_locus 2023-08-16 15:03:46.717 root: INFO: instruction count: 10: __C893etypeDecode.__m903INPLACE_DECODE_r_int32_TO_r_int32 2023-08-16 15:03:46.717 root: INFO: instruction count: 58: __C893etypeDecode.__m904INPLACE_DECODE_o_array_of_r_binary_TO_o_array_of_r_string 2023-08-16 15:03:46.717 root: INFO: instruction count: 10: __C893etypeDecode.__m905INPLACE_DECODE_r_bool_TO_r_bool 2023-08-16 15:03:46.717 root: INFO: encoder cache miss (1 hits, 6 misses, 0.143) 2023-08-16 15:03:46.722 root: INFO: instruction count: 3: __C906HailClassLoaderContainer. 2023-08-16 15:03:46.722 root: INFO: instruction count: 3: __C906HailClassLoaderContainer. 2023-08-16 15:03:46.722 root: INFO: instruction count: 3: __C907FSContainer. 2023-08-16 15:03:46.722 root: INFO: instruction count: 3: __C907FSContainer. 2023-08-16 15:03:46.724 root: INFO: instruction count: 3: __C908etypeEncode. 2023-08-16 15:03:46.724 root: INFO: instruction count: 7: __C908etypeEncode.apply 2023-08-16 15:03:46.724 root: INFO: instruction count: 25: __C908etypeEncode.__m909ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDEND 2023-08-16 15:03:46.724 root: INFO: instruction count: 35: __C908etypeEncode.__m910ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND 2023-08-16 15:03:46.724 root: INFO: instruction count: 75: __C908etypeEncode.__m911ENCODE_SBaseStructPointer_TO_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND 2023-08-16 15:03:46.724 root: INFO: instruction count: 4: __C908etypeEncode.__m912ENCODE_SInt64$_TO_r_int64 2023-08-16 15:03:46.724 root: INFO: instruction count: 16: __C908etypeEncode.__m913ENCODE_SStringPointer_TO_r_binary 2023-08-16 15:03:46.724 root: INFO: instruction count: 41: __C908etypeEncode.__m914ENCODE_SIntervalPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolEND 2023-08-16 15:03:46.724 root: INFO: instruction count: 21: __C908etypeEncode.__m915ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32END 2023-08-16 15:03:46.725 root: INFO: instruction count: 74: __C908etypeEncode.__m916ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryEND 2023-08-16 15:03:46.725 root: INFO: instruction count: 25: __C908etypeEncode.__m917ENCODE_SCanonicalLocusPointer_TO_r_struct_of_r_binaryANDr_int32END 2023-08-16 15:03:46.725 root: INFO: instruction count: 4: __C908etypeEncode.__m918ENCODE_SInt32$_TO_r_int32 2023-08-16 15:03:46.725 root: INFO: instruction count: 39: __C908etypeEncode.__m919ENCODE_SIndexablePointer_TO_o_array_of_r_binary 2023-08-16 15:03:46.725 root: INFO: instruction count: 4: __C908etypeEncode.__m920ENCODE_SBoolean$_TO_r_bool 2023-08-16 15:03:46.752 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 132: (Let __iruid_2167 (GetField __iruid_2167 (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{__iruid_2167:+PCStruct{global_annotation_descriptions:+PCStruct{gnomad_sex_imputation_ploidy_cutoffs:+PCStruct{Description:+PCString},gnomad_population_inference_pca_metrics:+PCStruct{Description:+PCString},sample_hard_filter_cutoffs:+PCStruct{Description:+PCString},gnomad_sample_qc_metric_outlier_cutoffs:+PCStruct{Description:+PCString},gnomad_age_distribution:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},hgdp_tgp_freq_meta:+PCStruct{Description:+PCString},gnomad_freq_meta:+PCStruct{Description:+PCString},hgdp_tgp_freq_index_dict:+PCStruct{Description:+PCString},gnomad_freq_index_dict:+PCStruct{Description:+PCString},gnomad_faf_meta:+PCStruct{Description:+PCString},gnomad_faf_index_dict:+PCStruct{Description:+PCString},variant_filtering_model:+PCStruct{Description:+PCSet[+PCString],sub_globals:+PCStruct{model_name:+PCStruct{Description:+PCString},score_name:+PCStruct{Description:+PCString},snv_cutoff:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin:+PCStruct{Description:+PCString},min_score:+PCStruct{Description:+PCString}}},indel_cutoff:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin:+PCStruct{Description:+PCString},min_score:+PCStruct{Description:+PCString}}},snv_training_variables:+PCStruct{Description:+PCString},indel_training_variables:+PCStruct{Description:+PCString}}},variant_inbreeding_coeff_cutoff:+PCStruct{Description:+PCString},vep_version:+PCStruct{Description:+PCString},vep_csq_header:+PCStruct{Description:+PCString},dbsnp_version:+PCStruct{Description:+PCString}},sample_annotation_descriptions:+PCStruct{s:+PCStruct{Description:+PCString},bam_metrics:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pct_bases_20x:+PCStruct{Description:+PCString},pct_chimeras:+PCStruct{Description:+PCString},freemix:+PCStruct{Description:+PCString},mean_coverage:+PCStruct{Description:+PCString},median_coverage:+PCStruct{Description:+PCString},mean_insert_size:+PCStruct{Description:+PCString},median_insert_size:+PCStruct{Description:+PCString},pct_bases_10x:+PCStruct{Description:+PCString}}},sample_qc:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{n_deletion:+PCStruct{Description:+PCString},n_het:+PCStruct{Description:+PCString},n_hom_ref:+PCStruct{Description:+PCString},n_hom_var:+PCStruct{Description:+PCString},n_insertion:+PCStruct{Description:+PCString},n_non_ref:+PCStruct{Description:+PCString},n_snp:+PCStruct{Description:+PCString},n_transition:+PCStruct{Description:+PCString},n_transversion:+PCStruct{Description:+PCString},r_het_hom_var:+PCStruct{Description:+PCString},r_insertion_deletion:+PCStruct{Description:+PCString},r_ti_tv:+PCStruct{Description:+PCString}}},gnomad_sex_imputation:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{chr20_mean_dp:+PCStruct{Description:+PCString},chrX_mean_dp:+PCStruct{Description:+PCString},chrY_mean_dp:+PCStruct{Description:+PCString},chrX_ploidy:+PCStruct{Description:+PCString},chrY_ploidy:+PCStruct{Description:+PCString},X_karyotype:+PCStruct{Description:+PCString},Y_karyotype:+PCStruct{Description:+PCString},sex_karyotype:+PCStruct{Description:+PCString},f_stat:+PCStruct{Description:+PCString},n_called:+PCStruct{Description:+PCString},expected_homs:+PCStruct{Description:+PCString},observed_homs:+PCStruct{Description:+PCString}}},gnomad_population_inference:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pca_scores:+PCStruct{Description:+PCString},pop:+PCStruct{Description:+PCString},prob_afr:+PCStruct{Description:+PCString},prob_ami:+PCStruct{Description:+PCString},prob_amr:+PCStruct{Description:+PCString},prob_asj:+PCStruct{Description:+PCString},prob_eas:+PCStruct{Description:+PCString},prob_fin:+PCStruct{Description:+PCString},prob_mid:+PCStruct{Description:+PCString},prob_nfe:+PCStruct{Description:+PCString},prob_oth:+PCStruct{Description:+PCString},prob_sas:+PCStruct{Description:+PCString}}},gnomad_sample_qc_residuals:+PCStruct{Description:+PCTuple[0:+PCString],sub_annotations:+PCStruct{n_snp_residual:+PCStruct{Description:+PCString},r_ti_tv_residual:+PCStruct{Description:+PCString},r_insertion_deletion_residual:+PCStruct{Description:+PCString},n_insertion_residual:+PCStruct{Description:+PCString},n_deletion_residual:+PCStruct{Description:+PCString},r_het_hom_var_residual:+PCStruct{Description:+PCString},n_transition_residual:+PCStruct{Description:+PCString},n_transversion_residual:+PCStruct{Description:+PCString}}},gnomad_sample_filters:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{hard_filters:+PCStruct{Description:+PCString},hard_filtered:+PCStruct{Description:+PCString},release_related:+PCStruct{Description:+PCString},qc_metrics_filters:+PCStruct{Description:+PCString}}},gnomad_high_quality:+PCStruct{Description:+PCString},gnomad_release:+PCStruct{Description:+PCString},relatedness_inference:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{related_samples:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{s:+PCStruct{Description:+PCString},kin:+PCStruct{Description:+PCString},ibd0:+PCStruct{Description:+PCString},ibd1:+PCStruct{Description:+PCString},ibd2:+PCStruct{Description:+PCString}}},related:+PCStruct{Description:+PCString}}},hgdp_tgp_meta:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{project:+PCStruct{Description:+PCString},study_region:+PCStruct{Description:+PCString},population:+PCStruct{Description:+PCString},genetic_region:+PCStruct{Description:+PCString},latitude:+PCStruct{Description:+PCString},longitude:+PCStruct{Description:+PCString},hgdp_technical_meta:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{source:+PCStruct{Description:+PCString},library_type:+PCStruct{Description:+PCString}}},global_pca_scores:+PCStruct{Description:+PCString},subcontinental_pca:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pca_scores:+PCStruct{Description:+PCString},pca_scores_outliers_removed:+PCStruct{Description:+PCString},outlier:+PCStruct{Description:+PCString}}},gnomad_labeled_subpop:+PCStruct{Description:+PCString}}},high_quality:+PCStruct{Description:+PCString}},gnomad_sex_imputation_ploidy_cutoffs:+PCStruct{x_ploidy_cutoffs:+PCStruct{upper_cutoff_X:+PFloat64,lower_cutoff_XX:+PFloat64,upper_cutoff_XX:+PFloat64,lower_cutoff_XXX:+PFloat64},y_ploidy_cutoffs:+PCStruct{lower_cutoff_Y:+PFloat64,upper_cutoff_Y:+PFloat64,lower_cutoff_YY:+PFloat64},f_stat_cutoff:+PFloat64},gnomad_population_inference_pca_metrics:+PCStruct{n_pcs:+PInt32,min_prob:+PFloat64},sample_hard_filter_cutoffs:+PCStruct{min_cov:+PInt32,max_n_snp:+PFloat64,min_n_snp:+PFloat64,max_n_singleton:+PFloat64,max_r_het_hom_var:+PFloat64,max_pct_contamination:+PFloat64,max_pct_chimera:+PFloat64,min_median_insert_size:+PInt32},gnomad_sample_qc_metric_outlier_cutoffs:+PCStruct{lms:+PCStruct{n_snp:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_singleton:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_ti_tv:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_insertion_deletion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_insertion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_deletion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_het_hom_var:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_transition:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_transversion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32}},qc_metrics_stats:+PCStruct{n_snp_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_singleton_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_ti_tv_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_insertion_deletion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_insertion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_deletion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_het_hom_var_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_transition_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_transversion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64}},n_pcs:+PInt32,used_regressed_metrics:+PBoolean},gnomad_age_distribution:+PCStruct{bin_edges:+PCArray[+PFloat64],bin_freq:+PCArray[+PInt32],n_smaller:+PInt32,n_larger:+PInt32},variant_annotation_descriptions:+PCStruct{locus:+PCStruct{Description:+PCString},alleles:+PCStruct{Description:+PCString},rsid:+PCStruct{Description:+PCString},a_index:+PCStruct{Description:+PCString},was_split:+PCStruct{Description:+PCString},hgdp_tgp_freq:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString}}},gnomad_freq:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString}}},gnomad_popmax:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString},pop:+PCStruct{Description:+PCString},faf95:+PCStruct{Description:+PCString}}},gnomad_faf:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{faf95:+PCStruct{Description:+PCString},faf99:+PCStruct{Description:+PCString}}},gnomad_qual_hists:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{gq_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gq_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},ab_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}}}},gnomad_raw_qual_hists:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{gq_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gq_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},ab_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}}}},gnomad_age_hist_het:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gnomad_age_hist_hom:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},filters:+PCStruct{Description:+PCString},info:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{QUALapprox:+PCStruct{Description:+PCString},SB:+PCStruct{Description:+PCString},MQ:+PCStruct{Description:+PCString},MQRankSum:+PCStruct{Description:+PCString},VarDP:+PCStruct{Description:+PCString},AS_ReadPosRankSum:+PCStruct{Description:+PCString},AS_pab_max:+PCStruct{Description:+PCString},AS_QD:+PCStruct{Description:+PCString},AS_MQ:+PCStruct{Description:+PCString},QD:+PCStruct{Description:+PCString},AS_MQRankSum:+PCStruct{Description:+PCString},FS:+PCStruct{Description:+PCString},AS_FS:+PCStruct{Description:+PCString},ReadPosRankSum:+PCStruct{Description:+PCString},AS_QUALapprox:+PCStruct{Description:+PCString},AS_SB_TABLE:+PCStruct{Description:+PCString},AS_VarDP:+PCStruct{Description:+PCString},AS_SOR:+PCStruct{Description:+PCString},SOR:+PCStruct{Description:+PCString},transmitted_singleton:+PCStruct{Description:+PCString},omni:+PCStruct{Description:+PCString},mills:+PCStruct{Description:+PCString},monoallelic:+PCStruct{Description:+PCString},InbreedingCoeff:+PCStruct{Description:+PCString}}},vep:+PCStruct{Description:+PCString},vqsr:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AS_VQSLOD:+PCStruct{Description:+PCString},AS_culprit:+PCStruct{Description:+PCString},NEGATIVE_TRAIN_SITE:+PCStruct{Description:+PCString},POSITIVE_TRAIN_SITE:+PCStruct{Description:+PCString}}},region_flag:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{lcr:+PCStruct{Description:+PCString},segdup:+PCStruct{Description:+PCString}}},allele_info:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{variant_type:+PCStruct{Description:+PCString},allele_type:+PCStruct{Description:+PCString},n_alt_alleles:+PCStruct{Description:+PCString}}},was_mixed:+PCStruct{Description:+PCString},cadd:+PCStruct{sub_annotations:+PCStruct{raw_score:+PCStruct{Description:+PCString},phred:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},revel:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{revel_score:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},splice_ai:+PCStruct{sub_annotations:+PCStruct{splice_ai:+PCStruct{Description:+PCString},splice_consequence:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},primate_ai:+PCStruct{sub_annotations:+PCStruct{primate_ai_score:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},AS_lowqual:+PCStruct{Description:+PCString},telomere_or_centromere:+PCStruct{Description:+PCString}},hgdp_tgp_freq_meta:+PCArray[+PCDict[+PCString,+PCString]],hgdp_tgp_freq_index_dict:+PCDict[+PCString,+PInt32],gnomad_freq_meta:+PCArray[+PCDict[+PCString,+PCString]],gnomad_freq_index_dict:+PCDict[+PCString,+PInt32],gnomad_faf_index_dict:+PCDict[+PCString,+PInt32],gnomad_faf_meta:+PCArray[+PCDict[+PCString,+PCString]],vep_version:+PCString,vep_csq_header:+PCString,dbsnp_version:+PCString,variant_filtering_model:+PCStruct{model_name:+PCString,score_name:+PCString,snv_cutoff:+PCStruct{bin:+PFloat64,min_score:+PFloat64},indel_cutoff:+PCStruct{bin:+PFloat64,min_score:+PFloat64},snv_training_variables:+PCArray[+PCString],indel_training_variables:+PCArray[+PCString]},variant_inbreeding_coeff_cutoff:+PFloat64},__iruid_2174:+PCStruct{global_annotation_descriptions:+PCStruct{gnomad_sex_imputation_ploidy_cutoffs:+PCStruct{Description:+PCString},gnomad_population_inference_pca_metrics:+PCStruct{Description:+PCString},sample_hard_filter_cutoffs:+PCStruct{Description:+PCString},gnomad_sample_qc_metric_outlier_cutoffs:+PCStruct{Description:+PCString},gnomad_age_distribution:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},hgdp_tgp_freq_meta:+PCStruct{Description:+PCString},gnomad_freq_meta:+PCStruct{Description:+PCString},hgdp_tgp_freq_index_dict:+PCStruct{Description:+PCString},gnomad_freq_index_dict:+PCStruct{Description:+PCString},gnomad_faf_meta:+PCStruct{Description:+PCString},gnomad_faf_index_dict:+PCStruct{Description:+PCString},variant_filtering_model:+PCStruct{Description:+PCSet[+PCString],sub_globals:+PCStruct{model_name:+PCStruct{Description:+PCString},score_name:+PCStruct{Description:+PCString},snv_cutoff:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin:+PCStruct{Description:+PCString},min_score:+PCStruct{Description:+PCString}}},indel_cutoff:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin:+PCStruct{Description:+PCString},min_score:+PCStruct{Description:+PCString}}},snv_training_variables:+PCStruct{Description:+PCString},indel_training_variables:+PCStruct{Description:+PCString}}},variant_inbreeding_coeff_cutoff:+PCStruct{Description:+PCString},vep_version:+PCStruct{Description:+PCString},vep_csq_header:+PCStruct{Description:+PCString},dbsnp_version:+PCStruct{Description:+PCString}},sample_annotation_descriptions:+PCStruct{s:+PCStruct{Description:+PCString},bam_metrics:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pct_bases_20x:+PCStruct{Description:+PCString},pct_chimeras:+PCStruct{Description:+PCString},freemix:+PCStruct{Description:+PCString},mean_coverage:+PCStruct{Description:+PCString},median_coverage:+PCStruct{Description:+PCString},mean_insert_size:+PCStruct{Description:+PCString},median_insert_size:+PCStruct{Description:+PCString},pct_bases_10x:+PCStruct{Description:+PCString}}},sample_qc:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{n_deletion:+PCStruct{Description:+PCString},n_het:+PCStruct{Description:+PCString},n_hom_ref:+PCStruct{Description:+PCString},n_hom_var:+PCStruct{Description:+PCString},n_insertion:+PCStruct{Description:+PCString},n_non_ref:+PCStruct{Description:+PCString},n_snp:+PCStruct{Description:+PCString},n_transition:+PCStruct{Description:+PCString},n_transversion:+PCStruct{Description:+PCString},r_het_hom_var:+PCStruct{Description:+PCString},r_insertion_deletion:+PCStruct{Description:+PCString},r_ti_tv:+PCStruct{Description:+PCString}}},gnomad_sex_imputation:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{chr20_mean_dp:+PCStruct{Description:+PCString},chrX_mean_dp:+PCStruct{Description:+PCString},chrY_mean_dp:+PCStruct{Description:+PCString},chrX_ploidy:+PCStruct{Description:+PCString},chrY_ploidy:+PCStruct{Description:+PCString},X_karyotype:+PCStruct{Description:+PCString},Y_karyotype:+PCStruct{Description:+PCString},sex_karyotype:+PCStruct{Description:+PCString},f_stat:+PCStruct{Description:+PCString},n_called:+PCStruct{Description:+PCString},expected_homs:+PCStruct{Description:+PCString},observed_homs:+PCStruct{Description:+PCString}}},gnomad_population_inference:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pca_scores:+PCStruct{Description:+PCString},pop:+PCStruct{Description:+PCString},prob_afr:+PCStruct{Description:+PCString},prob_ami:+PCStruct{Description:+PCString},prob_amr:+PCStruct{Description:+PCString},prob_asj:+PCStruct{Description:+PCString},prob_eas:+PCStruct{Description:+PCString},prob_fin:+PCStruct{Description:+PCString},prob_mid:+PCStruct{Description:+PCString},prob_nfe:+PCStruct{Description:+PCString},prob_oth:+PCStruct{Description:+PCString},prob_sas:+PCStruct{Description:+PCString}}},gnomad_sample_qc_residuals:+PCStruct{Description:+PCTuple[0:+PCString],sub_annotations:+PCStruct{n_snp_residual:+PCStruct{Description:+PCString},r_ti_tv_residual:+PCStruct{Description:+PCString},r_insertion_deletion_residual:+PCStruct{Description:+PCString},n_insertion_residual:+PCStruct{Description:+PCString},n_deletion_residual:+PCStruct{Description:+PCString},r_het_hom_var_residual:+PCStruct{Description:+PCString},n_transition_residual:+PCStruct{Description:+PCString},n_transversion_residual:+PCStruct{Description:+PCString}}},gnomad_sample_filters:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{hard_filters:+PCStruct{Description:+PCString},hard_filtered:+PCStruct{Description:+PCString},release_related:+PCStruct{Description:+PCString},qc_metrics_filters:+PCStruct{Description:+PCString}}},gnomad_high_quality:+PCStruct{Description:+PCString},gnomad_release:+PCStruct{Description:+PCString},relatedness_inference:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{related_samples:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{s:+PCStruct{Description:+PCString},kin:+PCStruct{Description:+PCString},ibd0:+PCStruct{Description:+PCString},ibd1:+PCStruct{Description:+PCString},ibd2:+PCStruct{Description:+PCString}}},related:+PCStruct{Description:+PCString}}},hgdp_tgp_meta:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{project:+PCStruct{Description:+PCString},study_region:+PCStruct{Description:+PCString},population:+PCStruct{Description:+PCString},genetic_region:+PCStruct{Description:+PCString},latitude:+PCStruct{Description:+PCString},longitude:+PCStruct{Description:+PCString},hgdp_technical_meta:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{source:+PCStruct{Description:+PCString},library_type:+PCStruct{Description:+PCString}}},global_pca_scores:+PCStruct{Description:+PCString},subcontinental_pca:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pca_scores:+PCStruct{Description:+PCString},pca_scores_outliers_removed:+PCStruct{Description:+PCString},outlier:+PCStruct{Description:+PCString}}},gnomad_labeled_subpop:+PCStruct{Description:+PCString}}},high_quality:+PCStruct{Description:+PCString}},gnomad_sex_imputation_ploidy_cutoffs:+PCStruct{x_ploidy_cutoffs:+PCStruct{upper_cutoff_X:+PFloat64,lower_cutoff_XX:+PFloat64,upper_cutoff_XX:+PFloat64,lower_cutoff_XXX:+PFloat64},y_ploidy_cutoffs:+PCStruct{lower_cutoff_Y:+PFloat64,upper_cutoff_Y:+PFloat64,lower_cutoff_YY:+PFloat64},f_stat_cutoff:+PFloat64},gnomad_population_inference_pca_metrics:+PCStruct{n_pcs:+PInt32,min_prob:+PFloat64},sample_hard_filter_cutoffs:+PCStruct{min_cov:+PInt32,max_n_snp:+PFloat64,min_n_snp:+PFloat64,max_n_singleton:+PFloat64,max_r_het_hom_var:+PFloat64,max_pct_contamination:+PFloat64,max_pct_chimera:+PFloat64,min_median_insert_size:+PInt32},gnomad_sample_qc_metric_outlier_cutoffs:+PCStruct{lms:+PCStruct{n_snp:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_singleton:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_ti_tv:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_insertion_deletion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_insertion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_deletion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_het_hom_var:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_transition:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_transversion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32}},qc_metrics_stats:+PCStruct{n_snp_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_singleton_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_ti_tv_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_insertion_deletion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_insertion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_deletion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_het_hom_var_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_transition_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_transversion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64}},n_pcs:+PInt32,used_regressed_metrics:+PBoolean},gnomad_age_distribution:+PCStruct{bin_edges:+PCArray[+PFloat64],bin_freq:+PCArray[+PInt32],n_smaller:+PInt32,n_larger:+PInt32},variant_annotation_descriptions:+PCStruct{locus:+PCStruct{Description:+PCString},alleles:+PCStruct{Description:+PCString},rsid:+PCStruct{Description:+PCString},a_index:+PCStruct{Description:+PCString},was_split:+PCStruct{Description:+PCString},hgdp_tgp_freq:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString}}},gnomad_freq:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString}}},gnomad_popmax:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString},pop:+PCStruct{Description:+PCString},faf95:+PCStruct{Description:+PCString}}},gnomad_faf:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{faf95:+PCStruct{Description:+PCString},faf99:+PCStruct{Description:+PCString}}},gnomad_qual_hists:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{gq_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gq_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},ab_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}}}},gnomad_raw_qual_hists:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{gq_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gq_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},ab_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}}}},gnomad_age_hist_het:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gnomad_age_hist_hom:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},filters:+PCStruct{Description:+PCString},info:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{QUALapprox:+PCStruct{Description:+PCString},SB:+PCStruct{Description:+PCString},MQ:+PCStruct{Description:+PCString},MQRankSum:+PCStruct{Description:+PCString},VarDP:+PCStruct{Description:+PCString},AS_ReadPosRankSum:+PCStruct{Description:+PCString},AS_pab_max:+PCStruct{Description:+PCString},AS_QD:+PCStruct{Description:+PCString},AS_MQ:+PCStruct{Description:+PCString},QD:+PCStruct{Description:+PCString},AS_MQRankSum:+PCStruct{Description:+PCString},FS:+PCStruct{Description:+PCString},AS_FS:+PCStruct{Description:+PCString},ReadPosRankSum:+PCStruct{Description:+PCString},AS_QUALapprox:+PCStruct{Description:+PCString},AS_SB_TABLE:+PCStruct{Description:+PCString},AS_VarDP:+PCStruct{Description:+PCString},AS_SOR:+PCStruct{Description:+PCString},SOR:+PCStruct{Description:+PCString},transmitted_singleton:+PCStruct{Description:+PCString},omni:+PCStruct{Description:+PCString},mills:+PCStruct{Description:+PCString},monoallelic:+PCStruct{Description:+PCString},InbreedingCoeff:+PCStruct{Description:+PCString}}},vep:+PCStruct{Description:+PCString},vqsr:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AS_VQSLOD:+PCStruct{Description:+PCString},AS_culprit:+PCStruct{Description:+PCString},NEGATIVE_TRAIN_SITE:+PCStruct{Description:+PCString},POSITIVE_TRAIN_SITE:+PCStruct{Description:+PCString}}},region_flag:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{lcr:+PCStruct{Description:+PCString},segdup:+PCStruct{Description:+PCString}}},allele_info:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{variant_type:+PCStruct{Description:+PCString},allele_type:+PCStruct{Description:+PCString},n_alt_alleles:+PCStruct{Description:+PCString}}},was_mixed:+PCStruct{Description:+PCString},cadd:+PCStruct{sub_annotations:+PCStruct{raw_score:+PCStruct{Description:+PCString},phred:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},revel:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{revel_score:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},splice_ai:+PCStruct{sub_annotations:+PCStruct{splice_ai:+PCStruct{Description:+PCString},splice_consequence:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},primate_ai:+PCStruct{sub_annotations:+PCStruct{primate_ai_score:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},AS_lowqual:+PCStruct{Description:+PCString},telomere_or_centromere:+PCStruct{Description:+PCString}},hgdp_tgp_freq_meta:+PCArray[+PCDict[+PCString,+PCString]],hgdp_tgp_freq_index_dict:+PCDict[+PCString,+PInt32],gnomad_freq_meta:+PCArray[+PCDict[+PCString,+PCString]],gnomad_freq_index_dict:+PCDict[+PCString,+PInt32],gnomad_faf_index_dict:+PCDict[+PCString,+PInt32],gnomad_faf_meta:+PCArray[+PCDict[+PCString,+PCString]],vep_version:+PCString,vep_csq_header:+PCString,dbsnp_version:+PCString,variant_filtering_model:+PCStruct{model_name:+PCString,score_name:+PCString,snv_cutoff:+PCStruct{bin:+PFloat64,min_score:+PFloat64},indel_cutoff:+PCStruct{bin:+PFloat64,min_score:+PFloat64},snv_training_variables:+PCArray[+PCString],indel_training_variables:+PCArray[+PCString]},variant_inbreeding_coeff_cutoff:+PFloat64,__cols:+PCArray[+PCStruct{s:+PCString}]}})) 1)) (Let __iruid_2174 (GetField __iruid_2174 (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{__iruid_2167:+PCStruct{global_annotation_descriptions:+PCStruct{gnomad_sex_imputation_ploidy_cutoffs:+PCStruct{Description:+PCString},gnomad_population_inference_pca_metrics:+PCStruct{Description:+PCString},sample_hard_filter_cutoffs:+PCStruct{Description:+PCString},gnomad_sample_qc_metric_outlier_cutoffs:+PCStruct{Description:+PCString},gnomad_age_distribution:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},hgdp_tgp_freq_meta:+PCStruct{Description:+PCString},gnomad_freq_meta:+PCStruct{Description:+PCString},hgdp_tgp_freq_index_dict:+PCStruct{Description:+PCString},gnomad_freq_index_dict:+PCStruct{Description:+PCString},gnomad_faf_meta:+PCStruct{Description:+PCString},gnomad_faf_index_dict:+PCStruct{Description:+PCString},variant_filtering_model:+PCStruct{Description:+PCSet[+PCString],sub_globals:+PCStruct{model_name:+PCStruct{Description:+PCString},score_name:+PCStruct{Description:+PCString},snv_cutoff:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin:+PCStruct{Description:+PCString},min_score:+PCStruct{Description:+PCString}}},indel_cutoff:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin:+PCStruct{Description:+PCString},min_score:+PCStruct{Description:+PCString}}},snv_training_variables:+PCStruct{Description:+PCString},indel_training_variables:+PCStruct{Description:+PCString}}},variant_inbreeding_coeff_cutoff:+PCStruct{Description:+PCString},vep_version:+PCStruct{Description:+PCString},vep_csq_header:+PCStruct{Description:+PCString},dbsnp_version:+PCStruct{Description:+PCString}},sample_annotation_descriptions:+PCStruct{s:+PCStruct{Description:+PCString},bam_metrics:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pct_bases_20x:+PCStruct{Description:+PCString},pct_chimeras:+PCStruct{Description:+PCString},freemix:+PCStruct{Description:+PCString},mean_coverage:+PCStruct{Description:+PCString},median_coverage:+PCStruct{Description:+PCString},mean_insert_size:+PCStruct{Description:+PCString},median_insert_size:+PCStruct{Description:+PCString},pct_bases_10x:+PCStruct{Description:+PCString}}},sample_qc:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{n_deletion:+PCStruct{Description:+PCString},n_het:+PCStruct{Description:+PCString},n_hom_ref:+PCStruct{Description:+PCString},n_hom_var:+PCStruct{Description:+PCString},n_insertion:+PCStruct{Description:+PCString},n_non_ref:+PCStruct{Description:+PCString},n_snp:+PCStruct{Description:+PCString},n_transition:+PCStruct{Description:+PCString},n_transversion:+PCStruct{Description:+PCString},r_het_hom_var:+PCStruct{Description:+PCString},r_insertion_deletion:+PCStruct{Description:+PCString},r_ti_tv:+PCStruct{Description:+PCString}}},gnomad_sex_imputation:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{chr20_mean_dp:+PCStruct{Description:+PCString},chrX_mean_dp:+PCStruct{Description:+PCString},chrY_mean_dp:+PCStruct{Description:+PCString},chrX_ploidy:+PCStruct{Description:+PCString},chrY_ploidy:+PCStruct{Description:+PCString},X_karyotype:+PCStruct{Description:+PCString},Y_karyotype:+PCStruct{Description:+PCString},sex_karyotype:+PCStruct{Description:+PCString},f_stat:+PCStruct{Description:+PCString},n_called:+PCStruct{Description:+PCString},expected_homs:+PCStruct{Description:+PCString},observed_homs:+PCStruct{Description:+PCString}}},gnomad_population_inference:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pca_scores:+PCStruct{Description:+PCString},pop:+PCStruct{Description:+PCString},prob_afr:+PCStruct{Description:+PCString},prob_ami:+PCStruct{Description:+PCString},prob_amr:+PCStruct{Description:+PCString},prob_asj:+PCStruct{Description:+PCString},prob_eas:+PCStruct{Description:+PCString},prob_fin:+PCStruct{Description:+PCString},prob_mid:+PCStruct{Description:+PCString},prob_nfe:+PCStruct{Description:+PCString},prob_oth:+PCStruct{Description:+PCString},prob_sas:+PCStruct{Description:+PCString}}},gnomad_sample_qc_residuals:+PCStruct{Description:+PCTuple[0:+PCString],sub_annotations:+PCStruct{n_snp_residual:+PCStruct{Description:+PCString},r_ti_tv_residual:+PCStruct{Description:+PCString},r_insertion_deletion_residual:+PCStruct{Description:+PCString},n_insertion_residual:+PCStruct{Description:+PCString},n_deletion_residual:+PCStruct{Description:+PCString},r_het_hom_var_residual:+PCStruct{Description:+PCString},n_transition_residual:+PCStruct{Description:+PCString},n_transversion_residual:+PCStruct{Description:+PCString}}},gnomad_sample_filters:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{hard_filters:+PCStruct{Description:+PCString},hard_filtered:+PCStruct{Description:+PCString},release_related:+PCStruct{Description:+PCString},qc_metrics_filters:+PCStruct{Description:+PCString}}},gnomad_high_quality:+PCStruct{Description:+PCString},gnomad_release:+PCStruct{Description:+PCString},relatedness_inference:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{related_samples:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{s:+PCStruct{Description:+PCString},kin:+PCStruct{Description:+PCString},ibd0:+PCStruct{Description:+PCString},ibd1:+PCStruct{Description:+PCString},ibd2:+PCStruct{Description:+PCString}}},related:+PCStruct{Description:+PCString}}},hgdp_tgp_meta:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{project:+PCStruct{Description:+PCString},study_region:+PCStruct{Description:+PCString},population:+PCStruct{Description:+PCString},genetic_region:+PCStruct{Description:+PCString},latitude:+PCStruct{Description:+PCString},longitude:+PCStruct{Description:+PCString},hgdp_technical_meta:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{source:+PCStruct{Description:+PCString},library_type:+PCStruct{Description:+PCString}}},global_pca_scores:+PCStruct{Description:+PCString},subcontinental_pca:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pca_scores:+PCStruct{Description:+PCString},pca_scores_outliers_removed:+PCStruct{Description:+PCString},outlier:+PCStruct{Description:+PCString}}},gnomad_labeled_subpop:+PCStruct{Description:+PCString}}},high_quality:+PCStruct{Description:+PCString}},gnomad_sex_imputation_ploidy_cutoffs:+PCStruct{x_ploidy_cutoffs:+PCStruct{upper_cutoff_X:+PFloat64,lower_cutoff_XX:+PFloat64,upper_cutoff_XX:+PFloat64,lower_cutoff_XXX:+PFloat64},y_ploidy_cutoffs:+PCStruct{lower_cutoff_Y:+PFloat64,upper_cutoff_Y:+PFloat64,lower_cutoff_YY:+PFloat64},f_stat_cutoff:+PFloat64},gnomad_population_inference_pca_metrics:+PCStruct{n_pcs:+PInt32,min_prob:+PFloat64},sample_hard_filter_cutoffs:+PCStruct{min_cov:+PInt32,max_n_snp:+PFloat64,min_n_snp:+PFloat64,max_n_singleton:+PFloat64,max_r_het_hom_var:+PFloat64,max_pct_contamination:+PFloat64,max_pct_chimera:+PFloat64,min_median_insert_size:+PInt32},gnomad_sample_qc_metric_outlier_cutoffs:+PCStruct{lms:+PCStruct{n_snp:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_singleton:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_ti_tv:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_insertion_deletion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_insertion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_deletion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_het_hom_var:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_transition:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_transversion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32}},qc_metrics_stats:+PCStruct{n_snp_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_singleton_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_ti_tv_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_insertion_deletion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_insertion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_deletion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_het_hom_var_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_transition_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_transversion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64}},n_pcs:+PInt32,used_regressed_metrics:+PBoolean},gnomad_age_distribution:+PCStruct{bin_edges:+PCArray[+PFloat64],bin_freq:+PCArray[+PInt32],n_smaller:+PInt32,n_larger:+PInt32},variant_annotation_descriptions:+PCStruct{locus:+PCStruct{Description:+PCString},alleles:+PCStruct{Description:+PCString},rsid:+PCStruct{Description:+PCString},a_index:+PCStruct{Description:+PCString},was_split:+PCStruct{Description:+PCString},hgdp_tgp_freq:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString}}},gnomad_freq:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString}}},gnomad_popmax:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString},pop:+PCStruct{Description:+PCString},faf95:+PCStruct{Description:+PCString}}},gnomad_faf:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{faf95:+PCStruct{Description:+PCString},faf99:+PCStruct{Description:+PCString}}},gnomad_qual_hists:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{gq_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gq_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},ab_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}}}},gnomad_raw_qual_hists:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{gq_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gq_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},ab_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}}}},gnomad_age_hist_het:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gnomad_age_hist_hom:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},filters:+PCStruct{Description:+PCString},info:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{QUALapprox:+PCStruct{Description:+PCString},SB:+PCStruct{Description:+PCString},MQ:+PCStruct{Description:+PCString},MQRankSum:+PCStruct{Description:+PCString},VarDP:+PCStruct{Description:+PCString},AS_ReadPosRankSum:+PCStruct{Description:+PCString},AS_pab_max:+PCStruct{Description:+PCString},AS_QD:+PCStruct{Description:+PCString},AS_MQ:+PCStruct{Description:+PCString},QD:+PCStruct{Description:+PCString},AS_MQRankSum:+PCStruct{Description:+PCString},FS:+PCStruct{Description:+PCString},AS_FS:+PCStruct{Description:+PCString},ReadPosRankSum:+PCStruct{Description:+PCString},AS_QUALapprox:+PCStruct{Description:+PCString},AS_SB_TABLE:+PCStruct{Description:+PCString},AS_VarDP:+PCStruct{Description:+PCString},AS_SOR:+PCStruct{Description:+PCString},SOR:+PCStruct{Description:+PCString},transmitted_singleton:+PCStruct{Description:+PCString},omni:+PCStruct{Description:+PCString},mills:+PCStruct{Description:+PCString},monoallelic:+PCStruct{Description:+PCString},InbreedingCoeff:+PCStruct{Description:+PCString}}},vep:+PCStruct{Description:+PCString},vqsr:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AS_VQSLOD:+PCStruct{Description:+PCString},AS_culprit:+PCStruct{Description:+PCString},NEGATIVE_TRAIN_SITE:+PCStruct{Description:+PCString},POSITIVE_TRAIN_SITE:+PCStruct{Description:+PCString}}},region_flag:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{lcr:+PCStruct{Description:+PCString},segdup:+PCStruct{Description:+PCString}}},allele_info:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{variant_type:+PCStruct{Description:+PCString},allele_type:+PCStruct{Description:+PCString},n_alt_alleles:+PCStruct{Description:+PCString}}},was_mixed:+PCStruct{Description:+PCString},cadd:+PCStruct{sub_annotations:+PCStruct{raw_score:+PCStruct{Description:+PCString},phred:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},revel:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{revel_score:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},splice_ai:+PCStruct{sub_annotations:+PCStruct{splice_ai:+PCStruct{Description:+PCString},splice_consequence:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},primate_ai:+PCStruct{sub_annotations:+PCStruct{primate_ai_score:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},AS_lowqual:+PCStruct{Description:+PCString},telomere_or_centromere:+PCStruct{Description:+PCString}},hgdp_tgp_freq_meta:+PCArray[+PCDict[+PCString,+PCString]],hgdp_tgp_freq_index_dict:+PCDict[+PCString,+PInt32],gnomad_freq_meta:+PCArray[+PCDict[+PCString,+PCString]],gnomad_freq_index_dict:+PCDict[+PCString,+PInt32],gnomad_faf_index_dict:+PCDict[+PCString,+PInt32],gnomad_faf_meta:+PCArray[+PCDict[+PCString,+PCString]],vep_version:+PCString,vep_csq_header:+PCString,dbsnp_version:+PCString,variant_filtering_model:+PCStruct{model_name:+PCString,score_name:+PCString,snv_cutoff:+PCStruct{bin:+PFloat64,min_score:+PFloat64},indel_cutoff:+PCStruct{bin:+PFloat64,min_score:+PFloat64},snv_training_variables:+PCArray[+PCString],indel_training_variables:+PCArray[+PCString]},variant_inbreeding_coeff_cutoff:+PFloat64},__iruid_2174:+PCStruct{global_annotation_descriptions:+PCStruct{gnomad_sex_imputation_ploidy_cutoffs:+PCStruct{Description:+PCString},gnomad_population_inference_pca_metrics:+PCStruct{Description:+PCString},sample_hard_filter_cutoffs:+PCStruct{Description:+PCString},gnomad_sample_qc_metric_outlier_cutoffs:+PCStruct{Description:+PCString},gnomad_age_distribution:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},hgdp_tgp_freq_meta:+PCStruct{Description:+PCString},gnomad_freq_meta:+PCStruct{Description:+PCString},hgdp_tgp_freq_index_dict:+PCStruct{Description:+PCString},gnomad_freq_index_dict:+PCStruct{Description:+PCString},gnomad_faf_meta:+PCStruct{Description:+PCString},gnomad_faf_index_dict:+PCStruct{Description:+PCString},variant_filtering_model:+PCStruct{Description:+PCSet[+PCString],sub_globals:+PCStruct{model_name:+PCStruct{Description:+PCString},score_name:+PCStruct{Description:+PCString},snv_cutoff:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin:+PCStruct{Description:+PCString},min_score:+PCStruct{Description:+PCString}}},indel_cutoff:+PCStruct{Description:+PCString,sub_globals:+PCStruct{bin:+PCStruct{Description:+PCString},min_score:+PCStruct{Description:+PCString}}},snv_training_variables:+PCStruct{Description:+PCString},indel_training_variables:+PCStruct{Description:+PCString}}},variant_inbreeding_coeff_cutoff:+PCStruct{Description:+PCString},vep_version:+PCStruct{Description:+PCString},vep_csq_header:+PCStruct{Description:+PCString},dbsnp_version:+PCStruct{Description:+PCString}},sample_annotation_descriptions:+PCStruct{s:+PCStruct{Description:+PCString},bam_metrics:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pct_bases_20x:+PCStruct{Description:+PCString},pct_chimeras:+PCStruct{Description:+PCString},freemix:+PCStruct{Description:+PCString},mean_coverage:+PCStruct{Description:+PCString},median_coverage:+PCStruct{Description:+PCString},mean_insert_size:+PCStruct{Description:+PCString},median_insert_size:+PCStruct{Description:+PCString},pct_bases_10x:+PCStruct{Description:+PCString}}},sample_qc:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{n_deletion:+PCStruct{Description:+PCString},n_het:+PCStruct{Description:+PCString},n_hom_ref:+PCStruct{Description:+PCString},n_hom_var:+PCStruct{Description:+PCString},n_insertion:+PCStruct{Description:+PCString},n_non_ref:+PCStruct{Description:+PCString},n_snp:+PCStruct{Description:+PCString},n_transition:+PCStruct{Description:+PCString},n_transversion:+PCStruct{Description:+PCString},r_het_hom_var:+PCStruct{Description:+PCString},r_insertion_deletion:+PCStruct{Description:+PCString},r_ti_tv:+PCStruct{Description:+PCString}}},gnomad_sex_imputation:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{chr20_mean_dp:+PCStruct{Description:+PCString},chrX_mean_dp:+PCStruct{Description:+PCString},chrY_mean_dp:+PCStruct{Description:+PCString},chrX_ploidy:+PCStruct{Description:+PCString},chrY_ploidy:+PCStruct{Description:+PCString},X_karyotype:+PCStruct{Description:+PCString},Y_karyotype:+PCStruct{Description:+PCString},sex_karyotype:+PCStruct{Description:+PCString},f_stat:+PCStruct{Description:+PCString},n_called:+PCStruct{Description:+PCString},expected_homs:+PCStruct{Description:+PCString},observed_homs:+PCStruct{Description:+PCString}}},gnomad_population_inference:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pca_scores:+PCStruct{Description:+PCString},pop:+PCStruct{Description:+PCString},prob_afr:+PCStruct{Description:+PCString},prob_ami:+PCStruct{Description:+PCString},prob_amr:+PCStruct{Description:+PCString},prob_asj:+PCStruct{Description:+PCString},prob_eas:+PCStruct{Description:+PCString},prob_fin:+PCStruct{Description:+PCString},prob_mid:+PCStruct{Description:+PCString},prob_nfe:+PCStruct{Description:+PCString},prob_oth:+PCStruct{Description:+PCString},prob_sas:+PCStruct{Description:+PCString}}},gnomad_sample_qc_residuals:+PCStruct{Description:+PCTuple[0:+PCString],sub_annotations:+PCStruct{n_snp_residual:+PCStruct{Description:+PCString},r_ti_tv_residual:+PCStruct{Description:+PCString},r_insertion_deletion_residual:+PCStruct{Description:+PCString},n_insertion_residual:+PCStruct{Description:+PCString},n_deletion_residual:+PCStruct{Description:+PCString},r_het_hom_var_residual:+PCStruct{Description:+PCString},n_transition_residual:+PCStruct{Description:+PCString},n_transversion_residual:+PCStruct{Description:+PCString}}},gnomad_sample_filters:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{hard_filters:+PCStruct{Description:+PCString},hard_filtered:+PCStruct{Description:+PCString},release_related:+PCStruct{Description:+PCString},qc_metrics_filters:+PCStruct{Description:+PCString}}},gnomad_high_quality:+PCStruct{Description:+PCString},gnomad_release:+PCStruct{Description:+PCString},relatedness_inference:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{related_samples:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{s:+PCStruct{Description:+PCString},kin:+PCStruct{Description:+PCString},ibd0:+PCStruct{Description:+PCString},ibd1:+PCStruct{Description:+PCString},ibd2:+PCStruct{Description:+PCString}}},related:+PCStruct{Description:+PCString}}},hgdp_tgp_meta:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{project:+PCStruct{Description:+PCString},study_region:+PCStruct{Description:+PCString},population:+PCStruct{Description:+PCString},genetic_region:+PCStruct{Description:+PCString},latitude:+PCStruct{Description:+PCString},longitude:+PCStruct{Description:+PCString},hgdp_technical_meta:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{source:+PCStruct{Description:+PCString},library_type:+PCStruct{Description:+PCString}}},global_pca_scores:+PCStruct{Description:+PCString},subcontinental_pca:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{pca_scores:+PCStruct{Description:+PCString},pca_scores_outliers_removed:+PCStruct{Description:+PCString},outlier:+PCStruct{Description:+PCString}}},gnomad_labeled_subpop:+PCStruct{Description:+PCString}}},high_quality:+PCStruct{Description:+PCString}},gnomad_sex_imputation_ploidy_cutoffs:+PCStruct{x_ploidy_cutoffs:+PCStruct{upper_cutoff_X:+PFloat64,lower_cutoff_XX:+PFloat64,upper_cutoff_XX:+PFloat64,lower_cutoff_XXX:+PFloat64},y_ploidy_cutoffs:+PCStruct{lower_cutoff_Y:+PFloat64,upper_cutoff_Y:+PFloat64,lower_cutoff_YY:+PFloat64},f_stat_cutoff:+PFloat64},gnomad_population_inference_pca_metrics:+PCStruct{n_pcs:+PInt32,min_prob:+PFloat64},sample_hard_filter_cutoffs:+PCStruct{min_cov:+PInt32,max_n_snp:+PFloat64,min_n_snp:+PFloat64,max_n_singleton:+PFloat64,max_r_het_hom_var:+PFloat64,max_pct_contamination:+PFloat64,max_pct_chimera:+PFloat64,min_median_insert_size:+PInt32},gnomad_sample_qc_metric_outlier_cutoffs:+PCStruct{lms:+PCStruct{n_snp:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_singleton:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_ti_tv:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_insertion_deletion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_insertion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_deletion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},r_het_hom_var:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_transition:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32},n_transversion:+PCStruct{beta:+PCArray[+PFloat64],standard_error:+PCArray[+PFloat64],t_stat:+PCArray[+PFloat64],p_value:+PCArray[+PFloat64],multiple_standard_error:+PFloat64,multiple_r_squared:+PFloat64,adjusted_r_squared:+PFloat64,f_stat:+PFloat64,multiple_p_value:+PFloat64,n:+PInt32}},qc_metrics_stats:+PCStruct{n_snp_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_singleton_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_ti_tv_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_insertion_deletion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_insertion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_deletion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},r_het_hom_var_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_transition_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64},n_transversion_residual:+PCStruct{median:+PFloat64,mad:+PFloat64,lower:+PFloat64,upper:+PFloat64}},n_pcs:+PInt32,used_regressed_metrics:+PBoolean},gnomad_age_distribution:+PCStruct{bin_edges:+PCArray[+PFloat64],bin_freq:+PCArray[+PInt32],n_smaller:+PInt32,n_larger:+PInt32},variant_annotation_descriptions:+PCStruct{locus:+PCStruct{Description:+PCString},alleles:+PCStruct{Description:+PCString},rsid:+PCStruct{Description:+PCString},a_index:+PCStruct{Description:+PCString},was_split:+PCStruct{Description:+PCString},hgdp_tgp_freq:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString}}},gnomad_freq:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString}}},gnomad_popmax:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AC:+PCStruct{Description:+PCString},AF:+PCStruct{Description:+PCString},AN:+PCStruct{Description:+PCString},homozygote_count:+PCStruct{Description:+PCString},pop:+PCStruct{Description:+PCString},faf95:+PCStruct{Description:+PCString}}},gnomad_faf:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{faf95:+PCStruct{Description:+PCString},faf99:+PCStruct{Description:+PCString}}},gnomad_qual_hists:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{gq_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gq_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},ab_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}}}},gnomad_raw_qual_hists:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{gq_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_all:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gq_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},dp_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},ab_hist_alt:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}}}},gnomad_age_hist_het:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},gnomad_age_hist_hom:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{bin_edges:+PCStruct{Description:+PCString},bin_freq:+PCStruct{Description:+PCString},n_smaller:+PCStruct{Description:+PCString},n_larger:+PCStruct{Description:+PCString}}},filters:+PCStruct{Description:+PCString},info:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{QUALapprox:+PCStruct{Description:+PCString},SB:+PCStruct{Description:+PCString},MQ:+PCStruct{Description:+PCString},MQRankSum:+PCStruct{Description:+PCString},VarDP:+PCStruct{Description:+PCString},AS_ReadPosRankSum:+PCStruct{Description:+PCString},AS_pab_max:+PCStruct{Description:+PCString},AS_QD:+PCStruct{Description:+PCString},AS_MQ:+PCStruct{Description:+PCString},QD:+PCStruct{Description:+PCString},AS_MQRankSum:+PCStruct{Description:+PCString},FS:+PCStruct{Description:+PCString},AS_FS:+PCStruct{Description:+PCString},ReadPosRankSum:+PCStruct{Description:+PCString},AS_QUALapprox:+PCStruct{Description:+PCString},AS_SB_TABLE:+PCStruct{Description:+PCString},AS_VarDP:+PCStruct{Description:+PCString},AS_SOR:+PCStruct{Description:+PCString},SOR:+PCStruct{Description:+PCString},transmitted_singleton:+PCStruct{Description:+PCString},omni:+PCStruct{Description:+PCString},mills:+PCStruct{Description:+PCString},monoallelic:+PCStruct{Description:+PCString},InbreedingCoeff:+PCStruct{Description:+PCString}}},vep:+PCStruct{Description:+PCString},vqsr:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{AS_VQSLOD:+PCStruct{Description:+PCString},AS_culprit:+PCStruct{Description:+PCString},NEGATIVE_TRAIN_SITE:+PCStruct{Description:+PCString},POSITIVE_TRAIN_SITE:+PCStruct{Description:+PCString}}},region_flag:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{lcr:+PCStruct{Description:+PCString},segdup:+PCStruct{Description:+PCString}}},allele_info:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{variant_type:+PCStruct{Description:+PCString},allele_type:+PCStruct{Description:+PCString},n_alt_alleles:+PCStruct{Description:+PCString}}},was_mixed:+PCStruct{Description:+PCString},cadd:+PCStruct{sub_annotations:+PCStruct{raw_score:+PCStruct{Description:+PCString},phred:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},revel:+PCStruct{Description:+PCString,sub_annotations:+PCStruct{revel_score:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},splice_ai:+PCStruct{sub_annotations:+PCStruct{splice_ai:+PCStruct{Description:+PCString},splice_consequence:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},primate_ai:+PCStruct{sub_annotations:+PCStruct{primate_ai_score:+PCStruct{Description:+PCString},has_duplicate:+PCStruct{Description:+PCString}}},AS_lowqual:+PCStruct{Description:+PCString},telomere_or_centromere:+PCStruct{Description:+PCString}},hgdp_tgp_freq_meta:+PCArray[+PCDict[+PCString,+PCString]],hgdp_tgp_freq_index_dict:+PCDict[+PCString,+PInt32],gnomad_freq_meta:+PCArray[+PCDict[+PCString,+PCString]],gnomad_freq_index_dict:+PCDict[+PCString,+PInt32],gnomad_faf_index_dict:+PCDict[+PCString,+PInt32],gnomad_faf_meta:+PCArray[+PCDict[+PCString,+PCString]],vep_version:+PCString,vep_csq_header:+PCString,dbsnp_version:+PCString,variant_filtering_model:+PCStruct{model_name:+PCString,score_name:+PCString,snv_cutoff:+PCStruct{bin:+PFloat64,min_score:+PFloat64},indel_cutoff:+PCStruct{bin:+PFloat64,min_score:+PFloat64},snv_training_variables:+PCArray[+PCString],indel_training_variables:+PCArray[+PCString]},variant_inbreeding_coeff_cutoff:+PFloat64,__cols:+PCArray[+PCStruct{s:+PCString}]}})) 1)) (Let __iruid_2181 (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{context:+PCArray[+PCStruct{partitionIndex:+PInt64,leftPartitionPath:+PCString,rightPartitionPath:+PCString,indexPath:+PCString,interval:+PCInterval[+PCTuple[0:+PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[+PCString]},1:+PInt32]]}]})) 0) (Let __iruid_2172 (GetField context (Ref __iruid_2181)) (Let global (Ref __iruid_2174) (StreamMap __iruid_2179 (StreamFlatMap __iruid_2176 (Let global (Ref __iruid_2174) (StreamMap __iruid_2175 (Let global (Ref __iruid_2174) (StreamFilter row (StreamFlatMap __iruid_2173 (ToStream True (Ref __iruid_2172)) (Let __iruid_2168 (Ref __iruid_2173) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_2168)))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref row))) (I32 2)) (False)))) (Let row (Ref __iruid_2175) (InsertFields (Let __iruid_2013 (GetField alleles (Ref row)) (Let __iruid_2014 (GetField locus (Ref row)) (InsertFields (SelectFields (locus alleles a_index) (Ref row)) None (__uid_3 (ArraySort __iruid_2015 __iruid_2016 (StreamFlatMap __iruid_2017 (StreamFilter __iruid_2018 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_2013)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_2013) (Ref __iruid_2018)) (Str "*"))) (ToStream False (Let __iruid_2019 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_2014) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_2013) (I32 0)) (ApplyIR 14 indexArray () String (Ref __iruid_2013) (Ref __iruid_2017)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_2019)) (Ref __iruid_2014)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_2019))) (locus (GetField locus (Ref __iruid_2019))) (a_index (Ref __iruid_2017)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref row))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_2015)) (False) (If (IsNA (Ref __iruid_2016)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_2015) (Ref __iruid_2016)) (I32 0))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) (Let __iruid_2177 (GetField __uid_3 (Ref __iruid_2176)) (StreamMap __iruid_2178 (ToStream True (Ref __iruid_2177)) (InsertFields (Ref __iruid_2176) None (__uid_3 (Ref __iruid_2178)))))) (Let row (Ref __iruid_2179) (InsertFields (Let __iruid_2021 (GetField __uid_3 (Ref row)) (InsertFields (SelectFields (locus alleles a_index) (Ref row)) None (locus (GetField locus (Ref __iruid_2021))) (alleles (GetField alleles (Ref __iruid_2021))) (a_index (GetField a_index (Ref __iruid_2021))) (old_alleles (GetField alleles (Ref row))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))))))) 2023-08-16 15:03:46.792 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 98: (StreamFlatMap __iruid_2288 (StreamFilter __iruid_2289 (StreamFlatMap __iruid_2290 (ToStream True (GetField context (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{context:+PCArray[+PCStruct{partitionIndex:+PInt64,leftPartitionPath:+PCString,rightPartitionPath:+PCString,indexPath:+PCString,interval:+PCInterval[+PCTuple[0:+PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[+PCString]},1:+PInt32]]}]})) 0))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_2290))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_2289))) (I32 2)) (False))) (Let __iruid_2291 (InsertFields (Let __iruid_2292 (GetField alleles (Ref __iruid_2288)) (Let __iruid_2293 (GetField locus (Ref __iruid_2288)) (InsertFields (SelectFields (alleles) (Ref __iruid_2288)) None (__uid_3 (ArraySort __iruid_2294 __iruid_2295 (StreamFlatMap __iruid_2296 (StreamFilter __iruid_2297 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_2292)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_2292) (Ref __iruid_2297)) (Str "*"))) (ToStream False (Let __iruid_2298 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_2293) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_2292) (I32 0)) (ApplyIR 14 indexArray () String (Ref __iruid_2292) (Ref __iruid_2296)))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_2298)) (Ref __iruid_2293)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_2298))) (locus (GetField locus (Ref __iruid_2298))) (a_index (Ref __iruid_2296)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_2288))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_2294)) (False) (If (IsNA (Ref __iruid_2295)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_2294) (Ref __iruid_2295)) (I32 0))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_2288)))) (StreamMap __iruid_2299 (ToStream True (GetField __uid_3 (Ref __iruid_2291))) (InsertFields (SelectFields ( `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref __iruid_2291)) ("locus" "alleles" "a_index" "old_alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (locus (GetField locus (Ref __iruid_2299))) (alleles (GetField alleles (Ref __iruid_2299))) (a_index (GetField a_index (Ref __iruid_2299))) (old_alleles (GetField alleles (Ref __iruid_2291))))))) 2023-08-16 15:03:46.798 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 122: (StreamFlatMap __iruid_2288 (StreamFilter __iruid_2289 (StreamFlatMap __iruid_2290 (ToStream True (GetField context (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{context:+PCArray[+PCStruct{partitionIndex:+PInt64,leftPartitionPath:+PCString,rightPartitionPath:+PCString,indexPath:+PCString,interval:+PCInterval[+PCTuple[0:+PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[+PCString]},1:+PInt32]]}]})) 0))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_2290))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_2289))) (I32 2)) (False))) (Let __iruid_2291 (InsertFields (Let __iruid_2292 (GetField alleles (Ref __iruid_2288)) (Let __iruid_2293 (GetField locus (Ref __iruid_2288)) (InsertFields (SelectFields (alleles) (Ref __iruid_2288)) None (__uid_3 (ArraySort __iruid_2294 __iruid_2295 (StreamFlatMap __iruid_2296 (StreamFilter __iruid_2297 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_2292)) (I32 1)) (ApplyComparisonOp NEQ (Let __iruid_2304 (Ref __iruid_2292) (Let __iruid_2305 (Ref __iruid_2297) (ArrayRef 3 (Ref __iruid_2304) (If (ApplyComparisonOp LT (Ref __iruid_2305) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_2304)) (Ref __iruid_2305)) (Ref __iruid_2305))))) (Str "*"))) (ToStream False (Let __iruid_2298 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_2293) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_2292) (I32 0)) (Let __iruid_2302 (Ref __iruid_2292) (Let __iruid_2303 (Ref __iruid_2296) (ArrayRef 14 (Ref __iruid_2302) (If (ApplyComparisonOp LT (Ref __iruid_2303) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_2302)) (Ref __iruid_2303)) (Ref __iruid_2303))))))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_2298)) (Ref __iruid_2293)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_2298))) (locus (GetField locus (Ref __iruid_2298))) (a_index (Ref __iruid_2296)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_2288))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_2294)) (False) (If (IsNA (Ref __iruid_2295)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_2294) (Ref __iruid_2295)) (I32 0))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_2288)))) (StreamMap __iruid_2299 (ToStream True (GetField __uid_3 (Ref __iruid_2291))) (InsertFields (SelectFields ( `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref __iruid_2291)) ("locus" "alleles" "a_index" "old_alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (locus (GetField locus (Ref __iruid_2299))) (alleles (GetField alleles (Ref __iruid_2299))) (a_index (GetField a_index (Ref __iruid_2299))) (old_alleles (GetField alleles (Ref __iruid_2291))))))) 2023-08-16 15:03:46.828 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 114: (StreamFlatMap __iruid_2334 (StreamFilter __iruid_2335 (StreamFlatMap __iruid_2336 (ToStream True (GetField context (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{context:+PCArray[+PCStruct{partitionIndex:+PInt64,leftPartitionPath:+PCString,rightPartitionPath:+PCString,indexPath:+PCString,interval:+PCInterval[+PCTuple[0:+PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[+PCString]},1:+PInt32]]}]})) 0))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_2336))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_2335))) (I32 2)) (False))) (Let __iruid_2337 (InsertFields (Let __iruid_2338 (GetField alleles (Ref __iruid_2334)) (Let __iruid_2339 (GetField locus (Ref __iruid_2334)) (InsertFields (SelectFields (alleles) (Ref __iruid_2334)) None (__uid_3 (ArraySort __iruid_2340 __iruid_2341 (StreamFlatMap __iruid_2342 (StreamFilter __iruid_2343 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_2338)) (I32 1)) (ApplyComparisonOp NEQ (ArrayRef 3 (Ref __iruid_2338) (If (ApplyComparisonOp LT (Ref __iruid_2343) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_2338)) (Ref __iruid_2343)) (Ref __iruid_2343))) (Str "*"))) (ToStream False (Let __iruid_2344 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_2339) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_2338) (I32 0)) (ArrayRef 14 (Ref __iruid_2338) (If (ApplyComparisonOp LT (Ref __iruid_2342) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_2338)) (Ref __iruid_2342)) (Ref __iruid_2342))))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_2344)) (Ref __iruid_2339)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_2344))) (locus (GetField locus (Ref __iruid_2344))) (a_index (Ref __iruid_2342)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_2334))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_2340)) (False) (If (IsNA (Ref __iruid_2341)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_2340) (Ref __iruid_2341)) (I32 0))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_2334)))) (StreamMap __iruid_2345 (ToStream True (GetField __uid_3 (Ref __iruid_2337))) (InsertFields (SelectFields ( `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref __iruid_2337)) ("locus" "alleles" "a_index" "old_alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (locus (GetField locus (Ref __iruid_2345))) (alleles (GetField alleles (Ref __iruid_2345))) (a_index (GetField a_index (Ref __iruid_2345))) (old_alleles (GetField alleles (Ref __iruid_2337))))))) 2023-08-16 15:03:46.841 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 114: (StreamFlatMap __iruid_2334 (StreamFilter __iruid_2335 (StreamFlatMap __iruid_2336 (ToStream True (GetField context (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{context:+PCArray[+PCStruct{partitionIndex:+PInt64,leftPartitionPath:+PCString,rightPartitionPath:+PCString,indexPath:+PCString,interval:+PCInterval[+PCTuple[0:+PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[+PCString]},1:+PInt32]]}]})) 0))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_2336))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_2335))) (I32 2)) (False))) (Let __iruid_2337 (InsertFields (Let __iruid_2338 (GetField alleles (Ref __iruid_2334)) (Let __iruid_2339 (GetField locus (Ref __iruid_2334)) (InsertFields (SelectFields (alleles) (Ref __iruid_2334)) None (__uid_3 (ArraySort __iruid_2340 __iruid_2341 (StreamFlatMap __iruid_2342 (StreamFilter __iruid_2343 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_2338)) (I32 1)) (ApplyComparisonOp NEQ (ArrayRef 3 (Ref __iruid_2338) (If (ApplyComparisonOp LT (Ref __iruid_2343) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_2338)) (Ref __iruid_2343)) (Ref __iruid_2343))) (Str "*"))) (ToStream False (Let __iruid_2344 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_2339) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_2338) (I32 0)) (ArrayRef 14 (Ref __iruid_2338) (If (ApplyComparisonOp LT (Ref __iruid_2342) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_2338)) (Ref __iruid_2342)) (Ref __iruid_2342))))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_2344)) (Ref __iruid_2339)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_2344))) (locus (GetField locus (Ref __iruid_2344))) (a_index (Ref __iruid_2342)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_2334))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_2340)) (False) (If (IsNA (Ref __iruid_2341)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_2340) (Ref __iruid_2341)) (I32 0))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_2334)))) (StreamMap __iruid_2345 (ToStream True (GetField __uid_3 (Ref __iruid_2337))) (InsertFields (SelectFields ( `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref __iruid_2337)) ("locus" "alleles" "a_index" "old_alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (locus (GetField locus (Ref __iruid_2345))) (alleles (GetField alleles (Ref __iruid_2345))) (a_index (GetField a_index (Ref __iruid_2345))) (old_alleles (GetField alleles (Ref __iruid_2337))))))) 2023-08-16 15:03:46.871 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 114: (StreamFlatMap __iruid_2370 (StreamFilter __iruid_2371 (StreamFlatMap __iruid_2372 (ToStream True (GetField context (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{context:+PCArray[+PCStruct{partitionIndex:+PInt64,leftPartitionPath:+PCString,rightPartitionPath:+PCString,indexPath:+PCString,interval:+PCInterval[+PCTuple[0:+PCStruct{locus:+PCLocus(GRCh38),alleles:PCArray[+PCString]},1:+PInt32]]}]})) 0))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_2372))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_2371))) (I32 2)) (False))) (Let __iruid_2373 (InsertFields (Let __iruid_2374 (GetField alleles (Ref __iruid_2370)) (Let __iruid_2375 (GetField locus (Ref __iruid_2370)) (InsertFields (SelectFields (alleles) (Ref __iruid_2370)) None (__uid_3 (ArraySort __iruid_2376 __iruid_2377 (StreamFlatMap __iruid_2378 (StreamFilter __iruid_2379 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_2374)) (I32 1)) (ApplyComparisonOp NEQ (ArrayRef 3 (Ref __iruid_2374) (If (ApplyComparisonOp LT (Ref __iruid_2379) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_2374)) (Ref __iruid_2379)) (Ref __iruid_2379))) (Str "*"))) (ToStream False (Let __iruid_2380 (Apply 15 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_2375) (MakeArray Array[String] (ArrayRef 13 (Ref __iruid_2374) (I32 0)) (ArrayRef 14 (Ref __iruid_2374) (If (ApplyComparisonOp LT (Ref __iruid_2378) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_2374)) (Ref __iruid_2378)) (Ref __iruid_2378))))) (If (ApplyComparisonOp NEQ (GetField locus (Ref __iruid_2380)) (Ref __iruid_2375)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_2380))) (locus (GetField locus (Ref __iruid_2380))) (a_index (Ref __iruid_2378)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_2370))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_2376)) (False) (If (IsNA (Ref __iruid_2377)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_2376) (Ref __iruid_2377)) (I32 0))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_2370)))) (StreamMap __iruid_2381 (ToStream True (GetField __uid_3 (Ref __iruid_2373))) (InsertFields (SelectFields ( `the entries! [877f12a8827e18f61222c6c8c5fb04a8]`) (Ref __iruid_2373)) ("locus" "alleles" "a_index" "old_alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (locus (GetField locus (Ref __iruid_2381))) (alleles (GetField alleles (Ref __iruid_2381))) (a_index (GetField a_index (Ref __iruid_2381))) (old_alleles (GetField alleles (Ref __iruid_2373))))))) 2023-08-16 15:03:47.202 root: INFO: encoder cache miss (1 hits, 7 misses, 0.125) 2023-08-16 15:03:47.204 root: INFO: instruction count: 3: __C1144HailClassLoaderContainer. 2023-08-16 15:03:47.204 root: INFO: instruction count: 3: __C1144HailClassLoaderContainer. 2023-08-16 15:03:47.204 root: INFO: instruction count: 3: __C1145FSContainer. 2023-08-16 15:03:47.204 root: INFO: instruction count: 3: __C1145FSContainer. 2023-08-16 15:03:47.204 root: INFO: instruction count: 3: __C1146etypeEncode. 2023-08-16 15:03:47.204 root: INFO: instruction count: 7: __C1146etypeEncode.apply 2023-08-16 15:03:47.204 root: INFO: instruction count: 13: __C1146etypeEncode.__m1147ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryEND 2023-08-16 15:03:47.204 root: INFO: instruction count: 16: __C1146etypeEncode.__m1148ENCODE_SStringPointer_TO_r_binary 2023-08-16 15:03:47.207 MemoryStore: INFO: Block broadcast_5 stored as values in memory (estimated size 104.0 B, free 22.0 GiB) 2023-08-16 15:03:47.209 MemoryStore: INFO: Block broadcast_5_piece0 stored as bytes in memory (estimated size 62.0 B, free 22.0 GiB) 2023-08-16 15:03:47.209 BlockManagerInfo: INFO: Added broadcast_5_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 62.0 B, free: 22.0 GiB) 2023-08-16 15:03:47.211 SparkContext: INFO: Created broadcast 5 from broadcast at SparkBackend.scala:342 2023-08-16 15:03:47.213 root: INFO: instruction count: 3: __C921HailClassLoaderContainer. 2023-08-16 15:03:47.213 root: INFO: instruction count: 3: __C921HailClassLoaderContainer. 2023-08-16 15:03:47.213 root: INFO: instruction count: 3: __C922FSContainer. 2023-08-16 15:03:47.213 root: INFO: instruction count: 3: __C922FSContainer. 2023-08-16 15:03:47.275 root: INFO: instruction count: 3: __C923stream. 2023-08-16 15:03:47.276 root: INFO: instruction count: 117: __C923stream.apply 2023-08-16 15:03:47.276 root: INFO: instruction count: 7: __C923stream.setRegions 2023-08-16 15:03:47.276 root: INFO: instruction count: 36: __C923stream.__m939DECODE_o_struct_of_r_int64ANDr_array_of_r_struct_of_r_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDr_int64ANDr_struct_of_o_int64ENDENDEND_TO_SBaseStructPointer 2023-08-16 15:03:47.276 root: INFO: instruction count: 10: __C923stream.__m940INPLACE_DECODE_r_int64_TO_r_int64 2023-08-16 15:03:47.276 root: INFO: instruction count: 58: __C923stream.__m941INPLACE_DECODE_r_array_of_r_struct_of_r_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDr_int64ANDr_struct_of_o_int64ENDEND_TO_r_array_of_r_struct_of_r_struct_of_o_locusANDo_array_of_o_stringENDANDr_int64ANDr_struct_of_o_int64ENDEND 2023-08-16 15:03:47.276 root: INFO: instruction count: 35: __C923stream.__m942INPLACE_DECODE_r_struct_of_r_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDr_int64ANDr_struct_of_o_int64ENDEND_TO_r_struct_of_r_struct_of_o_locusANDo_array_of_o_stringENDANDr_int64ANDr_struct_of_o_int64ENDEND 2023-08-16 15:03:47.276 root: INFO: instruction count: 75: __C923stream.__m943INPLACE_DECODE_r_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryEND_TO_r_struct_of_o_locusANDo_array_of_o_stringEND 2023-08-16 15:03:47.276 root: INFO: instruction count: 26: __C923stream.__m944INPLACE_DECODE_o_struct_of_r_binaryANDr_int32END_TO_o_locus 2023-08-16 15:03:47.276 root: INFO: instruction count: 31: __C923stream.__m945INPLACE_DECODE_r_binary_TO_r_string 2023-08-16 15:03:47.276 root: INFO: instruction count: 10: __C923stream.__m946INPLACE_DECODE_r_int32_TO_r_int32 2023-08-16 15:03:47.277 root: INFO: instruction count: 114: __C923stream.__m947INPLACE_DECODE_o_array_of_o_binary_TO_o_array_of_o_string 2023-08-16 15:03:47.277 root: INFO: instruction count: 31: __C923stream.__m948INPLACE_DECODE_o_binary_TO_o_string 2023-08-16 15:03:47.277 root: INFO: instruction count: 48: __C923stream.__m949INPLACE_DECODE_r_struct_of_o_int64END_TO_r_struct_of_o_int64END 2023-08-16 15:03:47.277 root: INFO: instruction count: 10: __C923stream.__m950INPLACE_DECODE_o_int64_TO_o_int64 2023-08-16 15:03:47.277 root: INFO: instruction count: 27: __C923stream.__m951DECODE_o_struct_of_r_array_of_r_struct_of_r_int64ANDr_int64ANDr_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDr_int64ANDr_struct_of_o_int64ENDENDEND_TO_SBaseStructPointer 2023-08-16 15:03:47.277 root: INFO: instruction count: 58: __C923stream.__m952INPLACE_DECODE_r_array_of_r_struct_of_r_int64ANDr_int64ANDr_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDr_int64ANDr_struct_of_o_int64ENDEND_TO_r_array_of_r_struct_of_r_int64ANDr_int64ANDr_struct_of_o_locusANDo_array_of_o_stringENDANDr_int64ANDr_struct_of_o_int64ENDEND 2023-08-16 15:03:47.277 root: INFO: instruction count: 53: __C923stream.__m953INPLACE_DECODE_r_struct_of_r_int64ANDr_int64ANDr_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDr_int64ANDr_struct_of_o_int64ENDEND_TO_r_struct_of_r_int64ANDr_int64ANDr_struct_of_o_locusANDo_array_of_o_stringENDANDr_int64ANDr_struct_of_o_int64ENDEND 2023-08-16 15:03:47.278 root: INFO: instruction count: 390: __C923stream.__m958DECODE_r_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryANDo_array_of_o_binaryANDo_int32ANDo_boolANDo_array_of_r_binaryANDo_struct_of_o_array_of_o_int32ANDo_float64ANDr_int32ANDo_float64ANDo_float64ANDo_float64ANDo_float32ANDo_float64ANDo_int64ANDr_float32ANDo_float64ANDo_float64ANDr_float64ANDo_float64ANDr_int64ANDo_array_of_o_int32ANDo_int32ANDo_float64ANDo_float64ANDo_boolANDo_boolANDo_boolANDo_boolANDo_float32ANDo_float64ENDANDo_struct_of_o_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_array_of_o_struct_of_o_int32ANDo_array_of_o_binaryANDo_binaryANDo_int32ANDo_binaryENDANDo_binaryANDo_array_of_o_struct_of_o_int32ANDo_array_of_o_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_int32ANDo_float64ANDo_int32ANDo_binaryENDANDo_array_of_o_struct_of_o_int32ANDo_binaryANDo_array_of_o_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryENDANDo_binaryANDo_int32ANDo_int32ANDo_array_of_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryENDANDo_binaryENDANDo_struct_of_o_float64ANDo_binaryANDo_boolANDo_boolENDANDo_struct_of_r_boolANDr_boolENDANDo_struct_of_o_binaryANDo_binaryANDo_int32ANDo_boolENDANDo_array_of_o_struct_of_o_int32ANDo_float64ANDo_int32ANDo_int32ENDANDo_array_of_o_struct_of_o_int32ANDo_float64ANDo_int32ANDo_int32ENDANDo_struct_of_o_int32ANDo_float64ANDr_int32ANDo_int32ANDo_binaryANDo_float64ENDANDo_array_of_o_struct_of_o_float64ANDo_float64ENDANDo_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_o_int64ANDo_int64ANDo_int 2023-08-16 15:03:47.278 root: INFO: instruction count: 51: __C923stream.__m959SKIP_o_array_of_o_binary 2023-08-16 15:03:47.278 root: INFO: instruction count: 7: __C923stream.__m960SKIP_o_binary 2023-08-16 15:03:47.278 root: INFO: instruction count: 10: __C923stream.__m961INPLACE_DECODE_o_int32_TO_o_int32 2023-08-16 15:03:47.278 root: INFO: instruction count: 3: __C923stream.__m962SKIP_o_bool 2023-08-16 15:03:47.278 root: INFO: instruction count: 22: __C923stream.__m963SKIP_o_array_of_r_binary 2023-08-16 15:03:47.278 root: INFO: instruction count: 7: __C923stream.__m964SKIP_r_binary 2023-08-16 15:03:47.278 root: INFO: instruction count: 328: __C923stream.__m965SKIP_o_struct_of_o_array_of_o_int32ANDo_float64ANDr_int32ANDo_float64ANDo_float64ANDo_float64ANDo_float32ANDo_float64ANDo_int64ANDr_float32ANDo_float64ANDo_float64ANDr_float64ANDo_float64ANDr_int64ANDo_array_of_o_int32ANDo_int32ANDo_float64ANDo_float64ANDo_boolANDo_boolANDo_boolANDo_boolANDo_float32ANDo_float64END 2023-08-16 15:03:47.278 root: INFO: instruction count: 51: __C923stream.__m966SKIP_o_array_of_o_int32 2023-08-16 15:03:47.278 root: INFO: instruction count: 3: __C923stream.__m967SKIP_o_int32 2023-08-16 15:03:47.278 root: INFO: instruction count: 3: __C923stream.__m968SKIP_o_float64 2023-08-16 15:03:47.278 root: INFO: instruction count: 3: __C923stream.__m969SKIP_r_int32 2023-08-16 15:03:47.278 root: INFO: instruction count: 3: __C923stream.__m970SKIP_o_float32 2023-08-16 15:03:47.278 root: INFO: instruction count: 3: __C923stream.__m971SKIP_o_int64 2023-08-16 15:03:47.279 root: INFO: instruction count: 3: __C923stream.__m972SKIP_r_float32 2023-08-16 15:03:47.279 root: INFO: instruction count: 3: __C923stream.__m973SKIP_r_float64 2023-08-16 15:03:47.279 root: INFO: instruction count: 3: __C923stream.__m974SKIP_r_int64 2023-08-16 15:03:47.279 root: INFO: instruction count: 238: __C923stream.__m975SKIP_o_struct_of_o_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_array_of_o_struct_of_o_int32ANDo_array_of_o_binaryANDo_binaryANDo_int32ANDo_binaryENDANDo_binaryANDo_array_of_o_struct_of_o_int32ANDo_array_of_o_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_int32ANDo_float64ANDo_int32ANDo_binaryENDANDo_array_of_o_struct_of_o_int32ANDo_binaryANDo_array_of_o_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryENDANDo_binaryANDo_int32ANDo_int32ANDo_array_of_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryENDANDo_binaryEND 2023-08-16 15:03:47.279 root: INFO: instruction count: 51: __C923stream.__m976SKIP_o_array_of_o_struct_of_o_int32ANDo_array_of_o_binaryANDo_binaryANDo_int32ANDo_binaryEND 2023-08-16 15:03:47.279 root: INFO: instruction count: 86: __C923stream.__m977SKIP_o_struct_of_o_int32ANDo_array_of_o_binaryANDo_binaryANDo_int32ANDo_binaryEND 2023-08-16 15:03:47.279 root: INFO: instruction count: 51: __C923stream.__m978SKIP_o_array_of_o_struct_of_o_int32ANDo_array_of_o_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_int32ANDo_float64ANDo_int32ANDo_binaryEND 2023-08-16 15:03:47.280 root: INFO: instruction count: 173: __C923stream.__m979SKIP_o_struct_of_o_int32ANDo_array_of_o_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_int32ANDo_float64ANDo_int32ANDo_binaryEND 2023-08-16 15:03:47.280 root: INFO: instruction count: 51: __C923stream.__m980SKIP_o_array_of_o_struct_of_o_int32ANDo_binaryANDo_array_of_o_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND 2023-08-16 15:03:47.280 root: INFO: instruction count: 112: __C923stream.__m981SKIP_o_struct_of_o_int32ANDo_binaryANDo_array_of_o_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND 2023-08-16 15:03:47.280 root: INFO: instruction count: 51: __C923stream.__m982SKIP_o_array_of_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND 2023-08-16 15:03:47.281 root: INFO: instruction count: 480: __C923stream.__m983SKIP_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND 2023-08-16 15:03:47.281 root: INFO: instruction count: 51: __C923stream.__m984SKIP_o_array_of_o_struct_of_o_binaryANDo_binaryEND 2023-08-16 15:03:47.281 root: INFO: instruction count: 47: __C923stream.__m985SKIP_o_struct_of_o_binaryANDo_binaryEND 2023-08-16 15:03:47.281 root: INFO: instruction count: 73: __C923stream.__m986SKIP_o_struct_of_o_float64ANDo_binaryANDo_boolANDo_boolEND 2023-08-16 15:03:47.281 root: INFO: instruction count: 16: __C923stream.__m987SKIP_o_struct_of_r_boolANDr_boolEND 2023-08-16 15:03:47.281 root: INFO: instruction count: 3: __C923stream.__m988SKIP_r_bool 2023-08-16 15:03:47.281 root: INFO: instruction count: 73: __C923stream.__m989SKIP_o_struct_of_o_binaryANDo_binaryANDo_int32ANDo_boolEND 2023-08-16 15:03:47.281 root: INFO: instruction count: 51: __C923stream.__m990SKIP_o_array_of_o_struct_of_o_int32ANDo_float64ANDo_int32ANDo_int32END 2023-08-16 15:03:47.281 root: INFO: instruction count: 73: __C923stream.__m991SKIP_o_struct_of_o_int32ANDo_float64ANDo_int32ANDo_int32END 2023-08-16 15:03:47.282 root: INFO: instruction count: 90: __C923stream.__m992SKIP_o_struct_of_o_int32ANDo_float64ANDr_int32ANDo_int32ANDo_binaryANDo_float64END 2023-08-16 15:03:47.282 root: INFO: instruction count: 51: __C923stream.__m993SKIP_o_array_of_o_struct_of_o_float64ANDo_float64END 2023-08-16 15:03:47.282 root: INFO: instruction count: 47: __C923stream.__m994SKIP_o_struct_of_o_float64ANDo_float64END 2023-08-16 15:03:47.282 root: INFO: instruction count: 28: __C923stream.__m995SKIP_o_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_o_int64ANDo_int64ANDo_int64ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_o_int64ANDo_int64ANDo_int64ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_o_int64ANDo_int64ANDo_int64ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_o_int64ANDo_int64ANDo_int64ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_o_int64ANDo_int64ANDo_int64ENDEND 2023-08-16 15:03:47.282 root: INFO: instruction count: 55: __C923stream.__m996SKIP_r_struct_of_r_array_of_r_float64ANDr_array_of_o_int64ANDo_int64ANDo_int64END 2023-08-16 15:03:47.282 root: INFO: instruction count: 22: __C923stream.__m997SKIP_r_array_of_r_float64 2023-08-16 15:03:47.282 root: INFO: instruction count: 51: __C923stream.__m998SKIP_r_array_of_o_int64 2023-08-16 15:03:47.282 root: INFO: instruction count: 55: __C923stream.__m999SKIP_o_struct_of_r_array_of_r_float64ANDr_array_of_o_int64ANDo_int64ANDo_int64END 2023-08-16 15:03:47.282 root: INFO: instruction count: 51: __C923stream.__m1000SKIP_o_struct_of_o_float32ANDo_float32ANDr_boolEND 2023-08-16 15:03:47.282 root: INFO: instruction count: 38: __C923stream.__m1001SKIP_o_struct_of_o_float64ANDr_boolEND 2023-08-16 15:03:47.282 root: INFO: instruction count: 51: __C923stream.__m1002SKIP_o_struct_of_o_float32ANDo_binaryANDr_boolEND 2023-08-16 15:03:47.282 root: INFO: instruction count: 38: __C923stream.__m1003SKIP_o_struct_of_o_float32ANDr_boolEND 2023-08-16 15:03:47.282 root: INFO: instruction count: 27: __C923stream.__m1004DECODE_r_struct_of_r_array_of_o_struct_of_o_int32ANDo_int32ANDo_int32ANDo_binaryANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_array_of_o_int32ANDo_array_of_o_int32ANDo_boolENDEND_TO_SBaseStructPointer 2023-08-16 15:03:47.282 root: INFO: instruction count: 114: __C923stream.__m1005INPLACE_DECODE_r_array_of_o_struct_of_o_int32ANDo_int32ANDo_int32ANDo_binaryANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_array_of_o_int32ANDo_array_of_o_int32ANDo_boolEND_TO_r_array_of_o_struct_of_o_int32ANDo_callANDo_array_of_o_int32END 2023-08-16 15:03:47.283 root: INFO: instruction count: 215: __C923stream.__m1006INPLACE_DECODE_o_struct_of_o_int32ANDo_int32ANDo_int32ANDo_binaryANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_array_of_o_int32ANDo_array_of_o_int32ANDo_boolEND_TO_o_struct_of_o_int32ANDo_callANDo_array_of_o_int32END 2023-08-16 15:03:47.283 root: INFO: instruction count: 10: __C923stream.__m1007INPLACE_DECODE_o_int32_TO_o_call 2023-08-16 15:03:47.283 root: INFO: instruction count: 114: __C923stream.__m1008INPLACE_DECODE_o_array_of_o_int32_TO_o_array_of_o_int32 2023-08-16 15:03:47.283 root: INFO: instruction count: 196: __C923stream.__m1014lowerBound 2023-08-16 15:03:47.284 root: INFO: instruction count: 73: __C923stream.__m1015readLeafNode 2023-08-16 15:03:47.285 root: INFO: instruction count: 407: __C923stream.__m1017findElt 2023-08-16 15:03:47.285 root: INFO: instruction count: 22: __C923stream.__m1018ord_compare 2023-08-16 15:03:47.285 root: INFO: instruction count: 74: __C923stream.__m1019ord_compareNonnull 2023-08-16 15:03:47.285 root: INFO: instruction count: 9: __C923stream.__m1021ord_compareNonnull 2023-08-16 15:03:47.285 root: INFO: instruction count: 89: __C923stream.__m1022ord_compareNonnull 2023-08-16 15:03:47.285 root: INFO: instruction count: 34: __C923stream.__m1023ord_compare 2023-08-16 15:03:47.285 root: INFO: instruction count: 135: __C923stream.__m1024ord_compareNonnull 2023-08-16 15:03:47.286 root: INFO: instruction count: 18: __C923stream.__m1025ord_compare 2023-08-16 15:03:47.286 root: INFO: instruction count: 71: __C923stream.__m1026readInternalNode 2023-08-16 15:03:47.287 root: INFO: instruction count: 407: __C923stream.__m1027findElt 2023-08-16 15:03:47.287 root: INFO: instruction count: 23: __C923stream.__m1031setup_null 2023-08-16 15:03:47.287 root: INFO: instruction count: 200: __C923stream.__m1032queryIndex 2023-08-16 15:03:47.287 root: INFO: instruction count: 11: __C923stream.__m1038ord_gt 2023-08-16 15:03:47.287 root: INFO: instruction count: 14: __C923stream.__m1039ord_gtNonnull 2023-08-16 15:03:47.288 root: INFO: instruction count: 444: __C923stream.__m1054split_ArraySort 2023-08-16 15:03:47.288 root: INFO: instruction count: 11: __C923stream.__m1062ord_lt 2023-08-16 15:03:47.288 root: INFO: instruction count: 14: __C923stream.__m1063ord_ltNonnull 2023-08-16 15:03:47.288 root: INFO: instruction count: 35: __C923stream.__m1064arrayref_bounds_check 2023-08-16 15:03:47.288 root: INFO: instruction count: 11: __C923stream.__m1066ord_equiv 2023-08-16 15:03:47.288 root: INFO: instruction count: 21: __C923stream.__m1067ord_equivNonnull 2023-08-16 15:03:47.289 root: INFO: instruction count: 332: __C923stream.__m1071split_Let 2023-08-16 15:03:47.289 root: INFO: instruction count: 285: __C923stream.__m1073min_rep 2023-08-16 15:03:47.289 root: INFO: instruction count: 12: __C923stream.__m1076setup_null 2023-08-16 15:03:47.289 root: INFO: instruction count: 15: __C923stream.__m1083ord_equiv 2023-08-16 15:03:47.290 root: INFO: instruction count: 25: __C923stream.__m1084ord_equivNonnull 2023-08-16 15:03:47.290 root: INFO: instruction count: 12: __C923stream.__m1097setup_jab 2023-08-16 15:03:47.290 root: INFO: instruction count: 70: __C923stream.__m1100dependent_sorting_func 2023-08-16 15:03:47.290 root: INFO: instruction count: 11: __C923stream.__m1103ord_compare 2023-08-16 15:03:47.290 root: INFO: instruction count: 453: __C923stream.__m1104ord_compareNonnull 2023-08-16 15:03:47.290 root: INFO: instruction count: 34: __C923stream.__m1105ord_compare 2023-08-16 15:03:47.291 root: INFO: instruction count: 82: __C923stream.__m1106ord_compareNonnull 2023-08-16 15:03:47.291 root: INFO: instruction count: 11: __C923stream.__m1107ord_compare 2023-08-16 15:03:47.291 root: INFO: instruction count: 34: __C923stream.__m1108ord_compare 2023-08-16 15:03:47.291 root: INFO: instruction count: 11: __C923stream.__m1109ord_compare 2023-08-16 15:03:47.291 root: INFO: instruction count: 8: __C923stream.__m1110ord_compareNonnull 2023-08-16 15:03:47.291 root: INFO: instruction count: 30: __C923stream.__m1111ord_compare 2023-08-16 15:03:47.291 root: INFO: instruction count: 8: __C923stream.__m1112ord_compareNonnull 2023-08-16 15:03:47.292 root: INFO: instruction count: 202: __C923stream.__m1113arraySorter_outer 2023-08-16 15:03:47.292 root: INFO: instruction count: 66: __C923stream.__m1114arraySorter_merge 2023-08-16 15:03:47.292 root: INFO: instruction count: 36: __C923stream.__m1115arraySorter_splitMerge 2023-08-16 15:03:47.293 root: INFO: instruction count: 3: __C923stream.loadAddress 2023-08-16 15:03:47.293 root: INFO: instruction count: 9: __C923stream.setPartitionIndex 2023-08-16 15:03:47.293 root: INFO: instruction count: 4: __C923stream.addPartitionRegion 2023-08-16 15:03:47.293 root: INFO: instruction count: 4: __C923stream.setPool 2023-08-16 15:03:47.293 root: INFO: instruction count: 3: __C923stream.addHailClassLoader 2023-08-16 15:03:47.293 root: INFO: instruction count: 3: __C923stream.addFS 2023-08-16 15:03:47.293 root: INFO: instruction count: 43: __C923stream.addReferenceGenomes 2023-08-16 15:03:47.293 root: INFO: instruction count: 39: __C923stream.addLiterals 2023-08-16 15:03:47.293 root: INFO: instruction count: 27: __C923stream.__m1143DECODE_r_struct_of_r_binaryEND_TO_SBaseStructPointer 2023-08-16 15:03:47.293 root: INFO: instruction count: 242: __C923stream.apply_region45_52 2023-08-16 15:03:47.294 root: INFO: instruction count: 182: __C923stream.apply_region41_44 2023-08-16 15:03:47.294 root: INFO: instruction count: 155: __C923stream.apply_region14_17 2023-08-16 15:03:47.294 root: INFO: instruction count: 144: __C923stream.apply_region69_76 2023-08-16 15:03:47.294 root: INFO: instruction count: 136: __C923stream.apply_region19_26 2023-08-16 15:03:47.295 root: INFO: instruction count: 595: __C923stream.apply_region3_93 2023-08-16 15:03:47.295 root: INFO: instruction count: 58: __C923stream.__m983SKIP_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND_region0_5 2023-08-16 15:03:47.295 root: INFO: instruction count: 36: __C923stream.__m983SKIP_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND_region120_125 2023-08-16 15:03:47.295 root: INFO: instruction count: 36: __C923stream.__m983SKIP_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND_region114_119 2023-08-16 15:03:47.295 root: INFO: instruction count: 36: __C923stream.__m983SKIP_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND_region108_113 2023-08-16 15:03:47.295 root: INFO: instruction count: 36: __C923stream.__m983SKIP_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND_region102_107 2023-08-16 15:03:47.295 root: INFO: instruction count: 36: __C923stream.__m983SKIP_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND_region96_101 2023-08-16 15:03:47.295 root: INFO: instruction count: 36: __C923stream.__m983SKIP_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND_region90_95 2023-08-16 15:03:47.295 root: INFO: instruction count: 36: __C923stream.__m983SKIP_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryEND_region84_89 2023-08-16 15:03:47.296 root: INFO: instruction count: 376: __C923stream.__m1071split_Let_region23_56 2023-08-16 15:03:47.296 root: INFO: instruction count: 3: __C1149applySpills. 2023-08-16 15:03:47.296 root: INFO: instruction count: 3: __C1170__m983SKIP_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryENDSpills. 2023-08-16 15:03:47.296 root: INFO: instruction count: 3: __C1183__m1071split_LetSpills. 2023-08-16 15:03:47.297 root: INFO: instruction count: 3: __C1020RGContainer_GRCh38. 2023-08-16 15:03:47.297 root: INFO: instruction count: 3: __C1020RGContainer_GRCh38. 2023-08-16 15:03:47.301 MemoryStore: INFO: Block broadcast_6 stored as values in memory (estimated size 445.1 KiB, free 22.0 GiB) 2023-08-16 15:03:47.320 MemoryStore: INFO: Block broadcast_6_piece0 stored as bytes in memory (estimated size 33.7 KiB, free 22.0 GiB) 2023-08-16 15:03:47.321 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 33.7 KiB, free: 22.0 GiB) 2023-08-16 15:03:47.323 SparkContext: INFO: Created broadcast 6 from broadcast at SparkBackend.scala:342 2023-08-16 15:03:48.052 SparkContext: INFO: Starting job: runJob at ContextRDD.scala:238 2023-08-16 15:03:48.072 DAGScheduler: INFO: Got job 0 (runJob at ContextRDD.scala:238) with 1 output partitions 2023-08-16 15:03:48.073 DAGScheduler: INFO: Final stage: ResultStage 0 (runJob at ContextRDD.scala:238) 2023-08-16 15:03:48.073 DAGScheduler: INFO: Parents of final stage: List() 2023-08-16 15:03:48.075 DAGScheduler: INFO: Missing parents: List() 2023-08-16 15:03:48.081 DAGScheduler: INFO: Submitting ResultStage 0 (MapPartitionsRDD[3] at mapPartitions at ContextRDD.scala:222), which has no missing parents 2023-08-16 15:03:48.142 YarnAllocator: INFO: Resource profile 0 doesn't exist, adding it 2023-08-16 15:03:48.143 YarnAllocator: INFO: Driver requested a total number of 1 executor(s) for resource profile id: 0. 2023-08-16 15:03:48.154 MemoryStore: INFO: Block broadcast_7 stored as values in memory (estimated size 888.5 KiB, free 22.0 GiB) 2023-08-16 15:03:48.160 MemoryStore: INFO: Block broadcast_7_piece0 stored as bytes in memory (estimated size 327.8 KiB, free 22.0 GiB) 2023-08-16 15:03:48.161 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 327.8 KiB, free: 22.0 GiB) 2023-08-16 15:03:48.162 SparkContext: INFO: Created broadcast 7 from broadcast at DAGScheduler.scala:1433 2023-08-16 15:03:48.225 DAGScheduler: INFO: Submitting 1 missing tasks from ResultStage 0 (MapPartitionsRDD[3] at mapPartitions at ContextRDD.scala:222) (first 15 tasks are for partitions Vector(0)) 2023-08-16 15:03:48.226 YarnScheduler: INFO: Adding task set 0.0 with 1 tasks resource profile 0 2023-08-16 15:03:48.253 FairSchedulableBuilder: INFO: Added task set TaskSet_0.0 tasks to pool default 2023-08-16 15:03:48.268 TaskSetManager: INFO: Starting task 0.0 in stage 0.0 (TID 0) (all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal, executor 1, partition 0, PROCESS_LOCAL, 4547 bytes) taskResourceAssignments Map() 2023-08-16 15:03:48.699 BlockManagerInfo: INFO: Added broadcast_7_piece0 in memory on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal:39013 (size: 327.8 KiB, free: 5.2 GiB) 2023-08-16 15:03:50.646 BlockManagerInfo: INFO: Added broadcast_4_piece0 in memory on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal:39013 (size: 55.6 KiB, free: 5.2 GiB) 2023-08-16 15:03:50.682 BlockManagerInfo: INFO: Added broadcast_6_piece0 in memory on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal:39013 (size: 33.7 KiB, free: 5.2 GiB) 2023-08-16 15:03:50.838 BlockManagerInfo: INFO: Added broadcast_5_piece0 in memory on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal:39013 (size: 62.0 B, free: 5.2 GiB) 2023-08-16 15:03:54.113 TaskSetManager: INFO: Finished task 0.0 in stage 0.0 (TID 0) in 5852 ms on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal (executor 1) (1/1) 2023-08-16 15:03:54.116 YarnScheduler: INFO: Removed TaskSet 0.0, whose tasks have all completed, from pool default 2023-08-16 15:03:54.123 DAGScheduler: INFO: ResultStage 0 (runJob at ContextRDD.scala:238) finished in 6.014 s 2023-08-16 15:03:54.128 DAGScheduler: INFO: Job 0 is finished. Cancelling potential speculative or zombie tasks for this job 2023-08-16 15:03:54.129 YarnScheduler: INFO: Killing all running tasks in stage 0: Stage finished 2023-08-16 15:03:54.131 DAGScheduler: INFO: Job 0 finished: runJob at ContextRDD.scala:238, took 6.079050 s 2023-08-16 15:03:54.145 root: INFO: encoder cache miss (1 hits, 8 misses, 0.111) 2023-08-16 15:03:54.226 root: INFO: instruction count: 3: __C1187HailClassLoaderContainer. 2023-08-16 15:03:54.226 root: INFO: instruction count: 3: __C1187HailClassLoaderContainer. 2023-08-16 15:03:54.226 root: INFO: instruction count: 3: __C1188FSContainer. 2023-08-16 15:03:54.227 root: INFO: instruction count: 3: __C1188FSContainer. 2023-08-16 15:03:54.251 root: INFO: instruction count: 3: __C1189etypeEncode. 2023-08-16 15:03:54.251 root: INFO: instruction count: 7: __C1189etypeEncode.apply 2023-08-16 15:03:54.251 root: INFO: instruction count: 289: __C1189etypeEncode.__m1190ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_stru 2023-08-16 15:03:54.252 root: INFO: instruction count: 129: __C1189etypeEncode.__m1191ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 13: __C1189etypeEncode.__m1192ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 16: __C1189etypeEncode.__m1193ENCODE_SStringPointer_TO_r_binary 2023-08-16 15:03:54.252 root: INFO: instruction count: 21: __C1189etypeEncode.__m1194ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 33: __C1189etypeEncode.__m1195ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 33: __C1189etypeEncode.__m1196ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 39: __C1189etypeEncode.__m1197ENCODE_SIndexablePointer_TO_r_array_of_r_binary 2023-08-16 15:03:54.252 root: INFO: instruction count: 49: __C1189etypeEncode.__m1198ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 21: __C1189etypeEncode.__m1199ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 17: __C1189etypeEncode.__m1200ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 97: __C1189etypeEncode.__m1201ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_ 2023-08-16 15:03:54.252 root: INFO: instruction count: 21: __C1189etypeEncode.__m1202ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 65: __C1189etypeEncode.__m1203ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 21: __C1189etypeEncode.__m1204ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 97: __C1189etypeEncode.__m1205ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.252 root: INFO: instruction count: 21: __C1189etypeEncode.__m1206ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 97: __C1189etypeEncode.__m1207ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 21: __C1189etypeEncode.__m1208ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 97: __C1189etypeEncode.__m1209ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 17: __C1189etypeEncode.__m1210ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 13: __C1189etypeEncode.__m1211ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 65: __C1189etypeEncode.__m1212ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 21: __C1189etypeEncode.__m1213ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 33: __C1189etypeEncode.__m1214ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 21: __C1189etypeEncode.__m1215ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 17: __C1189etypeEncode.__m1216ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 21: __C1189etypeEncode.__m1217ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 41: __C1189etypeEncode.__m1218ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 21: __C1189etypeEncode.__m1219ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 81: __C1189etypeEncode.__m1220ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 21: __C1189etypeEncode.__m1221ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 17: __C1189etypeEncode.__m1222ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 21: __C1189etypeEncode.__m1223ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 25: __C1189etypeEncode.__m1224ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.253 root: INFO: instruction count: 29: __C1189etypeEncode.__m1225ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ENDANDr_float64END 2023-08-16 15:03:54.253 root: INFO: instruction count: 49: __C1189etypeEncode.__m1226ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:54.253 root: INFO: instruction count: 4: __C1189etypeEncode.__m1227ENCODE_SFloat64$_TO_r_float64 2023-08-16 15:03:54.253 root: INFO: instruction count: 37: __C1189etypeEncode.__m1228ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:54.253 root: INFO: instruction count: 25: __C1189etypeEncode.__m1229ENCODE_SBaseStructPointer_TO_r_struct_of_r_int32ANDr_float64END 2023-08-16 15:03:54.253 root: INFO: instruction count: 4: __C1189etypeEncode.__m1230ENCODE_SInt32$_TO_r_int32 2023-08-16 15:03:54.253 root: INFO: instruction count: 97: __C1189etypeEncode.__m1231ENCODE_SBaseStructPointer_TO_r_struct_of_r_int32ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:54.254 root: INFO: instruction count: 41: __C1189etypeEncode.__m1232ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDENDANDr_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_flo 2023-08-16 15:03:54.254 root: INFO: instruction count: 73: __C1189etypeEncode.__m1233ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDEND 2023-08-16 15:03:54.254 root: INFO: instruction count: 169: __C1189etypeEncode.__m1234ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:54.254 root: INFO: instruction count: 39: __C1189etypeEncode.__m1235ENCODE_SIndexablePointer_TO_r_array_of_r_float64 2023-08-16 15:03:54.254 root: INFO: instruction count: 73: __C1189etypeEncode.__m1236ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDEND 2023-08-16 15:03:54.254 root: INFO: instruction count: 49: __C1189etypeEncode.__m1237ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:54.254 root: INFO: instruction count: 4: __C1189etypeEncode.__m1238ENCODE_SBoolean$_TO_r_bool 2023-08-16 15:03:54.254 root: INFO: instruction count: 73: __C1189etypeEncode.__m1239ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_int32ANDr_int32ANDr_int32END 2023-08-16 15:03:54.254 root: INFO: instruction count: 39: __C1189etypeEncode.__m1240ENCODE_SIndexablePointer_TO_r_array_of_r_int32 2023-08-16 15:03:54.254 root: INFO: instruction count: 209: __C1189etypeEncode.__m1241ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_stru 2023-08-16 15:03:54.254 root: INFO: instruction count: 21: __C1189etypeEncode.__m1242ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.254 root: INFO: instruction count: 33: __C1189etypeEncode.__m1243ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.254 root: INFO: instruction count: 21: __C1189etypeEncode.__m1244ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.254 root: INFO: instruction count: 49: __C1189etypeEncode.__m1245ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.254 root: INFO: instruction count: 21: __C1189etypeEncode.__m1246ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.254 root: INFO: instruction count: 17: __C1189etypeEncode.__m1247ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.254 root: INFO: instruction count: 21: __C1189etypeEncode.__m1248ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDEND 2023-08-16 15:03:54.254 root: INFO: instruction count: 41: __C1189etypeEncode.__m1249ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 21: __C1189etypeEncode.__m1250ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 21: __C1189etypeEncode.__m1251ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 193: __C1189etypeEncode.__m1252ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 21: __C1189etypeEncode.__m1253ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 33: __C1189etypeEncode.__m1254ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 21: __C1189etypeEncode.__m1255ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 17: __C1189etypeEncode.__m1256ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 21: __C1189etypeEncode.__m1257ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 25: __C1189etypeEncode.__m1258ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 9: __C1189etypeEncode.__m1259ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 25: __C1189etypeEncode.__m1260ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 21: __C1189etypeEncode.__m1261ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 17: __C1189etypeEncode.__m1262ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 9: __C1189etypeEncode.__m1263ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 25: __C1189etypeEncode.__m1264ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 9: __C1189etypeEncode.__m1265ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 17: __C1189etypeEncode.__m1266ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 51: __C1189etypeEncode.__m1267ENCODE_SIndexablePointer_TO_r_array_of_r_array_of_r_struct_of_r_binaryANDr_binaryEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 35: __C1189etypeEncode.__m1268ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_binaryANDr_binaryEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 25: __C1189etypeEncode.__m1269ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_binaryEND 2023-08-16 15:03:54.255 root: INFO: instruction count: 35: __C1189etypeEncode.__m1270ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_binaryANDr_int32END 2023-08-16 15:03:54.255 root: INFO: instruction count: 25: __C1189etypeEncode.__m1271ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_int32END 2023-08-16 15:03:54.255 root: INFO: instruction count: 89: __C1189etypeEncode.__m1272ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_binaryANDr_struct_of_r_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ENDANDr_array_of_r_binaryANDr_array_of_r_binaryEND 2023-08-16 15:03:54.256 root: INFO: instruction count: 25: __C1189etypeEncode.__m1273ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64END 2023-08-16 15:03:54.256 root: INFO: instruction count: 39: __C1189etypeEncode.__m1274ENCODE_SIndexablePointer_TO_r_array_of_r_binary 2023-08-16 15:03:54.256 root: INFO: instruction count: 35: __C1189etypeEncode.__m1275ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_binaryEND 2023-08-16 15:03:54.256 root: INFO: instruction count: 13: __C1189etypeEncode.__m1276ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryEND 2023-08-16 15:03:54.269 root: INFO: repartitionNoShuffle - fast path, generated 1 partitions from 0 (dropped 0 empty output parts) 2023-08-16 15:03:54.325 root: INFO: repartitionNoShuffle - fast path, generated 1 partitions from 2 (dropped 49999 empty output parts) 2023-08-16 15:03:54.368 root: INFO: compiling and evaluating result: TableWrite 2023-08-16 15:03:54.687 root: INFO: optimize optimize: relationalLowerer, initial IR: before: IR size 766: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_2153 (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Descrip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"{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))) (I32 0)) (Let __iruid_2160 (Let global (Ref __iruid_2153) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} )))))) (Let __iruid_2382 (EncodedLiteral Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64,__cols:Array[Struct{s:String}]}) (Let __iruid_2393 (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Descrip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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (MakeStruct (partitionIndex (I64 0)) (partitionPath (Str "gs://gcp-p..."))))) (I32 0)) (Let __iruid_2400 (Let global (Ref __iruid_2393) (InsertFields (Ref global) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} )))))) (Let __iruid_2405 (Let global (Ref __iruid_2160) (Let __iruid_2035 (ToDict (StreamMap __iruid_2036 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_2036)) (SelectFields (ancestry) (Ref __iruid_2036))))) (Let __iruid_2037 (ToArray (StreamMap __iruid_2038 (ToStream False (GetField __cols (Ref global))) (InsertFields (Ref __iruid_2038) None (__uid_40 (ApplyIR -1 get () Struct{ancestry:String} (Ref __iruid_2035) (MakeStruct (s (GetField s (Ref __iruid_2038))))))))) (Let __iruid_2039 (ToArray (StreamMap __iruid_2040 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2037)) (I32 1)) (Let __iruid_2041 (ArrayRef -1 (Ref __iruid_2037) (Ref __iruid_2040)) (InsertFields (SelectFields () (Ref __iruid_2041)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_2041)))))))) (InsertFields (Ref global) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__cols" "__iruid_1520") (__cols (Ref __iruid_2039)) (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_2042 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2039)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_2039) (Ref __iruid_2042))) (value (Ref __iruid_2042)))))))))))) (Let __iruid_2407 (Let global (Ref __iruid_2405) (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff __cols) (Ref global)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__cols") (__cols (Let __iruid_2065 (GetField __iruid_1520 (Ref global)) (ToArray (StreamMap __iruid_2066 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2065)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_2065) (Ref __iruid_2066))))))))) (Let __iruid_2414 (CollectDistributedArray matrix_native_writer __iruid_2410 __iruid_2412 (StreamZip -1 AssertSameLength (__iruid_2408 __iruid_2409) (StreamZip -1 AssumeSameLength (__iruid_2401 __iruid_2402) (StreamZip -1 AssumeSameLength (__iruid_2389 __iruid_2390) (Let __iruid_2155 (ToArray (ToStream False (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ))) (StreamMap __iruid_2156 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_2157 (ToStream False (Ref __iruid_2156)) (ArrayRef -1 (Ref __iruid_2155) (Ref __iruid_2157)))))) (Let __iruid_2384 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_2385 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_2386 (ToStream False (Ref __iruid_2385)) (ArrayRef -1 (Ref __iruid_2384) (Ref __iruid_2386)))))) (MakeTuple (0 1) (Ref __iruid_2389) (Ref __iruid_2390))) (Let __iruid_2395 (ToArray (ToStream False (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ))) (StreamMap __iruid_2396 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_2397 (ToStream False (Ref __iruid_2396)) (ArrayRef -1 (Ref __iruid_2395) (Ref __iruid_2397)))))) (MakeTuple (0 1) (Ref __iruid_2401) (Ref __iruid_2402))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_2408)) (writeCtx (Ref __iruid_2409)))) (MakeStruct (__iruid_2153 (Ref __iruid_2153)) (__iruid_2160 (Ref __iruid_2160)) (__iruid_2382 (Ref __iruid_2382)) (__iruid_2393 (Ref __iruid_2393)) (__iruid_2400 (Ref __iruid_2400)) (__iruid_2405 (Ref __iruid_2405)) (__iruid_2407 (Ref __iruid_2407))) (Let __iruid_2407 (GetField __iruid_2407 (Ref __iruid_2412)) (Let __iruid_2405 (GetField __iruid_2405 (Ref __iruid_2412)) (Let __iruid_2400 (GetField __iruid_2400 (Ref __iruid_2412)) (Let __iruid_2393 (GetField __iruid_2393 (Ref __iruid_2412)) (Let __iruid_2382 (GetField __iruid_2382 (Ref __iruid_2412)) (Let __iruid_2160 (GetField __iruid_2160 (Ref __iruid_2412)) (Let __iruid_2153 (GetField __iruid_2153 (Ref __iruid_2412)) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_2411 (GetField oldCtx (Ref __iruid_2410)) (Let __iruid_2403 (Ref __iruid_2411) (Let global (Ref __iruid_2405) (StreamMap __iruid_2406 (Let global (Ref __iruid_2160) (StreamMap __iruid_2404 (StreamMultiMerge (locus alleles) (Let __iruid_2391 (GetTupleElement 0 (Ref __iruid_2403)) (Let global (Ref __iruid_2160) (StreamMap __iruid_2392 (StreamMultiMerge (locus alleles) (Let __iruid_2158 (GetTupleElement 0 (Ref __iruid_2391)) (Let global (Ref __iruid_2160) (StreamMap __iruid_2166 (Let global (Ref __iruid_2160) (StreamMap __iruid_2165 (StreamFlatMap __iruid_2162 (Let global (Ref __iruid_2160) (StreamMap __iruid_2161 (Let global (Ref __iruid_2160) (StreamFilter row (StreamFlatMap __iruid_2159 (ToStream True (Ref __iruid_2158)) (Let __iruid_2154 (Ref __iruid_2159) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_2154)))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref row))) (I32 2)) (False)))) (Let row (Ref __iruid_2161) (InsertFields (Let __iruid_1999 (GetField alleles (Ref row)) (Let __iruid_2000 (GetField locus (Ref row)) (InsertFields (SelectFields (locus alleles a_index) (Ref row)) None (__uid_3 (ArraySort __iruid_2001 __iruid_2002 (StreamFlatMap __iruid_2003 (StreamFilter __iruid_2004 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_1999)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray ( ) String (Ref __iruid_1999) (Ref __iruid_2004)) (Str "*"))) (ToStream False (Let __iruid_2005 (Apply 9 min_rep ( ) Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_2000) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_1999) (I32 0)) (ApplyIR 8 indexArray ( ) String (Ref __iruid_1999) (Ref __iruid_2003)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_2005)) (Ref __iruid_2000)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_2005))) (locus (GetField locus (Ref __iruid_2005))) (a_index (Ref __iruid_2003)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref row))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_2001)) (False) (If (IsNA (Ref __iruid_2002)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_2001) (Ref __iruid_2002)) (I32 0))))))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))))) (Let __iruid_2163 (GetField __uid_3 (Ref __iruid_2162)) (StreamMap __iruid_2164 (ToStream True (Ref __iruid_2163)) (InsertFields (Ref __iruid_2162) None (__uid_3 (Ref __iruid_2164)))))) (Let row (Ref __iruid_2165) (Let __iruid_2100 (Ref row) (If (IsNA (Ref __iruid_2100)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_2100))) (alleles (GetField alleles (Ref __iruid_2100))) (a_index (GetField a_index (Ref __iruid_2100))) (__uid_3 (Let __iruid_2101 (GetField __uid_3 (Ref __iruid_2100)) (If (IsNA (Ref __iruid_2101)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_2101))) (locus (GetField locus (Ref __iruid_2101))) (a_index (GetField a_index (Ref __iruid_2101))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_2100))))))))) (Let row (Ref __iruid_2166) (Let __iruid_2008 (If (IsNA (Ref row)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref row))) (alleles (GetField alleles (Ref row))) (a_index (GetField a_index (Ref row))) (__uid_3 (Let __iruid_2009 (GetField __uid_3 (Ref row)) (If (IsNA (Ref __iruid_2009)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_2009))) (locus (GetField locus (Ref __iruid_2009))) (a_index (GetField a_index (Ref __iruid_2009))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))))) (Let __iruid_2010 (If (IsNA (Ref __iruid_2008)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_2008))) (alleles (GetField alleles (Ref __iruid_2008))) (a_index (GetField a_index (Ref __iruid_2008))) (__uid_3 (Let __iruid_2011 (GetField __uid_3 (Ref __iruid_2008)) (If (IsNA (Ref __iruid_2011)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_2011))) (locus (GetField locus (Ref __iruid_2011))) (a_index (GetField a_index (Ref __iruid_2011))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_2008))))) (InsertFields (Let __iruid_2012 (GetField __uid_3 (Ref __iruid_2010)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_2010)) None (locus (GetField locus (Ref __iruid_2012))) (alleles (GetField alleles (Ref __iruid_2012))) (a_index (GetField a_index (Ref __iruid_2012))) (old_alleles (GetField alleles (Ref __iruid_2010))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_2010)))))))))) (Let __iruid_2387 (GetTupleElement 1 (Ref __iruid_2391)) (StreamFlatMap __iruid_2388 (ToStream True (Ref __iruid_2387)) (Let __iruid_2383 (Ref __iruid_2388) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_2383)))))) (Let row (Ref __iruid_2392) (MakeStruct (locus (GetField locus (Ref row))) (alleles (GetField alleles (Ref row))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_2022 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_2022)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_2022)) (GetField a_index (Ref row)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_2022))) (NA Array[Int32]) (ToArray (StreamMap __iruid_2023 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 ( __iruid_2028 __iruid_2029) __iruid_2024 (StreamFilter __iruid_2025 (StreamMap __iruid_2026 (StreamFilter __iruid_2027 (StreamRange 22 False (I32 0) (Apply 21 triangle ( ) Int32 (ArrayLen (GetField old_alleles (Ref row)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex ( ) Int32 (Apply 24 downcode ( ) Call (Apply 23 UnphasedDiploidGtIndexCall ( ) Call (Ref __iruid_2027)) (GetField a_index (Ref row)))) (Ref __iruid_2023))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref __iruid_2022)) (Ref __iruid_2026))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_2025)))) (NA Int32) (True) (If (Ref __iruid_2029) (Ref __iruid_2024) (If (ApplyComparisonOp LT (Ref __iruid_2028) (Ref __iruid_2024)) (Ref __iruid_2028) (Ref __iruid_2024))) (False) (Ref __iruid_2028)))))) (GetField GQ (Ref __iruid_2022))))))))))))) (Let __iruid_2398 (GetTupleElement 1 (Ref __iruid_2403)) (Let global (Ref __iruid_2400) (StreamFilter row (StreamFlatMap __iruid_2399 (ToStream True (Ref __iruid_2398)) (Let __iruid_2394 (Ref __iruid_2399) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_2394)))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref row))) (I32 2)) (False)))))) (Let row (Ref __iruid_2404) (Let __iruid_2030 (ToArray (StreamMap __iruid_2031 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row))) (InsertFields (Ref __iruid_2031) None (GT (If (Let __iruid_2032 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_2031))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_2032))) (Ref __iruid_2032))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_2031))) (GetField GT (Ref __iruid_2031))))))) (InsertFields (Ref row) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (ToArray (StreamMap __iruid_2033 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (Ref global))) (I32 1)) (Let __iruid_2034 (ArrayRef -1 (Ref __iruid_2030) (Ref __iruid_2033)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_2034)) (I32 20)) (False)) (Ref __iruid_2034) (NA Struct{GQ:Int32,GT:Call}))))))))))) (Let row (Ref __iruid_2406) (InsertFields (Ref row) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_2043 (GetField __iruid_1520 (Ref global)) (ToArray (StreamMap __iruid_2044 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2043)) (I32 1)) (StreamAgg __iruid_2045 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_2043) (Ref __iruid_2044)))) (AggLet __iruid_2046 False (ArrayRef -1 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref row)) (Ref __iruid_2045)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_2046))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_2047 (AggLet __iruid_2048 False (GetField GT (Ref __iruid_2046)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_2048)) (I32 2)) (Let __iruid_2049 (ToArray (StreamMap __iruid_2050 (Let __iruid_2051 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_2048)) (ApplyAggOp Count () ())) (StreamMap __iruid_2052 (ToStream False (Ref __iruid_2051)) (MakeTuple (0 1) (GetField key (Ref __iruid_2052)) (GetField value (Ref __iruid_2052))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_2050)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_2050)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_2050))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_2049)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __iruid_2047) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __iruid_2047) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __iruid_2047) (I32 2) (I32 0)) (False)))))))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_2410)) (UUID4 __iruid_2413)))))))))) (NA String)) (Let __iruid_2415 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (ToStream False (GetField __cols (Ref __iruid_2407))) (Str "part-0")) (Let __iruid_2416 (Ref __iruid_2414) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (MakeStruct)) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,s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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String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ription:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_2407))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (MakeStruct (partitionCounts (I64 1)) (distinctlyKeyed (True)) (firstKey (MakeStruct)) (lastKey (MakeStruct))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_2415)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_2415)))) (Let __iruid_2418 (ToArray (StreamMap __iruid_2417 (ToStream False (Ref __iruid_2416)) (GetField filePath (Ref __iruid_2417)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_2418)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_2418)))) (Let __iruid_2420 (ToArray (StreamMap __iruid_2419 (ToStream False (Ref __iruid_2416)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_2419)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_2420)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_2421 (ToStream False (Ref __iruid_2420)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_2421)) None (firstKey (MakeStruct)) (lastKey (MakeStruct)))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_2415))) (rows (ToArray (StreamMap __iruid_2422 (ToStream False (Ref __iruid_2420)) (GetField partitionCounts (Ref __iruid_2422))))))))))))))))))))))))) 2023-08-16 15:03:54.792 root: INFO: Prune: MakeStruct: eliminating field '__iruid_2153' 2023-08-16 15:03:54.792 root: INFO: Prune: MakeStruct: eliminating field '__iruid_2382' 2023-08-16 15:03:54.792 root: INFO: Prune: MakeStruct: eliminating field '__iruid_2393' 2023-08-16 15:03:54.792 root: INFO: Prune: MakeStruct: eliminating field '__iruid_2400' 2023-08-16 15:03:54.792 root: INFO: Prune: MakeStruct: eliminating field '__iruid_2407' 2023-08-16 15:03:54.901 root: INFO: Prune: InsertFields: eliminating field '__cols' 2023-08-16 15:03:55.002 root: INFO: optimize optimize: relationalLowerer, initial IR: after: IR size 682: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_2972 (InsertFields (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (Let __iruid_2973 (ToDict (StreamMap __iruid_2974 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_2974)) (SelectFields (ancestry) (Ref __iruid_2974))))) (Let __iruid_2975 (ToArray (StreamMap __iruid_2976 (ToStream False (GetField __cols (Ref __iruid_2972))) (InsertFields (Ref __iruid_2976) None (__uid_40 (ApplyIR -1 get () Struct{ancestry:String} (Ref __iruid_2973) (MakeStruct (s (GetField s (Ref __iruid_2976))))))))) (Let __iruid_2977 (ToArray (StreamMap __iruid_2978 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2975)) (I32 1)) (Let __iruid_2979 (ArrayRef -1 (Ref __iruid_2975) (Ref __iruid_2978)) (InsertFields (SelectFields () (Ref __iruid_2979)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_2979)))))))) (Let __iruid_2980 (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_2972)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__iruid_1520") (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_2981 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2977)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_2977) (Ref __iruid_2981))) (value (Ref __iruid_2981)))))))) (Let __iruid_2982 (GetField __iruid_1520 (Ref __iruid_2980)) (Let __iruid_2983 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (StreamMap __iruid_2984 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2982)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_2982) (Ref __iruid_2984)))) (Str "part-0")) (Let __iruid_2985 (CollectDistributedArray matrix_native_writer __iruid_2986 __iruid_2987 (StreamZip -1 AssertSameLength (__iruid_2988 __iruid_2989) (StreamZip -1 AssumeSameLength (__iruid_2990 __iruid_2991) (StreamZip -1 AssumeSameLength (__iruid_2992 __iruid_2993) (StreamMap __iruid_2994 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_2995 (ToStream False (Ref __iruid_2994)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_2995))))) (Let __iruid_2996 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_2997 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_2998 (ToStream False (Ref __iruid_2997)) (ArrayRef -1 (Ref __iruid_2996) (Ref __iruid_2998)))))) (MakeTuple (0 1) (Ref __iruid_2992) (Ref __iruid_2993))) (StreamMap __iruid_2999 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3000 (ToStream False (Ref __iruid_2999)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_3000))))) (MakeTuple (0 1) (Ref __iruid_2990) (Ref __iruid_2991))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_2988)) (writeCtx (Ref __iruid_2989)))) (Let __iruid_3001 (MakeStruct (__iruid_2160 (Ref __iruid_2972)) (__iruid_2405 (Ref __iruid_2980))) (If (IsNA (Ref __iruid_3001)) (NA Struct{__iruid_2160:Struct{__cols:Array[Struct{}]},__iruid_2405:Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}}) (MakeStruct (__iruid_2160 (Let __iruid_3002 (GetField __iruid_2160 (Ref __iruid_3001)) (If (IsNA (Ref __iruid_3002)) (NA Struct{__cols:Array[Struct{}]}) (MakeStruct (__cols (ToArray (StreamMap __iruid_3003 (ToStream False (GetField __cols (Ref __iruid_3002))) (If (IsNA (Ref __iruid_3003)) (NA Struct{}) (Literal Struct{} ))))))))) (__iruid_2405 (Let __iruid_3004 (GetField __iruid_2405 (Ref __iruid_3001)) (If (IsNA (Ref __iruid_3004)) (NA Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}) (MakeStruct (__iruid_1520 (ToArray (StreamMap __iruid_3005 (ToStream False (GetField __iruid_1520 (Ref __iruid_3004))) (If (IsNA (Ref __iruid_3005)) (NA Struct{value:Array[Int32]}) (MakeStruct (value (GetField value (Ref __iruid_3005))))))))))))))) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_3006 (GetField oldCtx (Ref __iruid_2986)) (Let __iruid_3007 (GetField __iruid_2405 (Ref __iruid_2987)) (StreamMap __iruid_3008 (StreamMultiMerge (locus alleles) (Let __iruid_3009 (GetTupleElement 0 (Ref __iruid_3006)) (StreamMap __iruid_3010 (StreamMultiMerge (locus alleles) (StreamFlatMap __iruid_3011 (StreamFilter __iruid_3012 (StreamFlatMap __iruid_3013 (ToStream True (GetTupleElement 0 (Ref __iruid_3009))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3013))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3012))) (I32 2)) (False))) (StreamMap __iruid_3014 (Let __iruid_3015 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3011)) (Let __iruid_3016 (GetField alleles (Ref __iruid_3011)) (Let __iruid_3017 (GetField locus (Ref __iruid_3011)) (Let __iruid_3018 (SelectFields (locus alleles a_index) (Ref __iruid_3011)) (StreamMap __iruid_3019 (ToStream True (ArraySort __iruid_3020 __iruid_3021 (StreamFlatMap __iruid_3022 (StreamFilter __iruid_3023 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_3016)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_3016) (Ref __iruid_3023)) (Str "*"))) (ToStream False (Let __iruid_3024 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_3017) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_3016) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_3016) (Ref __iruid_3022)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_3024)) (Ref __iruid_3017)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_3024))) (locus (GetField locus (Ref __iruid_3024))) (a_index (Ref __iruid_3022)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3011))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_3020)) (False) (If (IsNA (Ref __iruid_3021)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_3020) (Ref __iruid_3021)) (I32 0)))))) (Let __iruid_3025 (InsertFields (Ref __iruid_3018) ("locus" "alleles" "a_index" "__uid_3" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3015)) (__uid_3 (Ref __iruid_3019))) (If (IsNA (Ref __iruid_3025)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3025))) (alleles (GetField alleles (Ref __iruid_3025))) (a_index (GetField a_index (Ref __iruid_3025))) (__uid_3 (Let __iruid_3026 (GetField __uid_3 (Ref __iruid_3025)) (If (IsNA (Ref __iruid_3026)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3026))) (locus (GetField locus (Ref __iruid_3026))) (a_index (GetField a_index (Ref __iruid_3026))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3025))))))))))) (Let __iruid_3027 (If (IsNA (Ref __iruid_3014)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3014))) (alleles (GetField alleles (Ref __iruid_3014))) (a_index (GetField a_index (Ref __iruid_3014))) (__uid_3 (Let __iruid_3028 (GetField __uid_3 (Ref __iruid_3014)) (If (IsNA (Ref __iruid_3028)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3028))) (locus (GetField locus (Ref __iruid_3028))) (a_index (GetField a_index (Ref __iruid_3028))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3014))))) (Let __iruid_3029 (If (IsNA (Ref __iruid_3027)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3027))) (alleles (GetField alleles (Ref __iruid_3027))) (a_index (GetField a_index (Ref __iruid_3027))) (__uid_3 (Let __iruid_3030 (GetField __uid_3 (Ref __iruid_3027)) (If (IsNA (Ref __iruid_3030)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3030))) (locus (GetField locus (Ref __iruid_3030))) (a_index (GetField a_index (Ref __iruid_3030))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3027))))) (InsertFields (Let __iruid_3031 (GetField __uid_3 (Ref __iruid_3029)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_3029)) None (locus (GetField locus (Ref __iruid_3031))) (alleles (GetField alleles (Ref __iruid_3031))) (a_index (GetField a_index (Ref __iruid_3031))) (old_alleles (GetField alleles (Ref __iruid_3029))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3029)))))))) (StreamFlatMap __iruid_3032 (ToStream True (GetTupleElement 1 (Ref __iruid_3009))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_3032)))) (MakeStruct (locus (GetField locus (Ref __iruid_3010))) (alleles (GetField alleles (Ref __iruid_3010))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_3033 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3010))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_3033)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_3033)) (GetField a_index (Ref __iruid_3010)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_3033))) (NA Array[Int32]) (ToArray (StreamMap __iruid_3034 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_3039 __iruid_3040) __iruid_3035 (StreamFilter __iruid_3036 (StreamMap __iruid_3037 (StreamFilter __iruid_3038 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref __iruid_3010)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_3038)) (GetField a_index (Ref __iruid_3010)))) (Ref __iruid_3034))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref __iruid_3033)) (Ref __iruid_3037))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3036)))) (NA Int32) (True) (If (Ref __iruid_3040) (Ref __iruid_3035) (If (ApplyComparisonOp LT (Ref __iruid_3039) (Ref __iruid_3035)) (Ref __iruid_3039) (Ref __iruid_3035))) (False) (Ref __iruid_3039)))))) (GetField GQ (Ref __iruid_3033))))))))))) (StreamFilter __iruid_3041 (StreamFlatMap __iruid_3042 (ToStream True (GetTupleElement 1 (Ref __iruid_3006))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3042))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref __iruid_3041))) (I32 2)) (False)))) (InsertFields (Ref __iruid_3008) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_3043 (GetField __iruid_1520 (Ref __iruid_3007)) (ToArray (StreamMap __iruid_3044 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3043)) (I32 1)) (StreamAgg __iruid_3045 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_3043) (Ref __iruid_3044)))) (AggLet __iruid_3046 False (ArrayRef -1 (ToArray (StreamMap __iruid_3047 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (GetField __iruid_2160 (Ref __iruid_2987)))) (I32 1)) (Let __iruid_3048 (ArrayRef -1 (ToArray (StreamMap __iruid_3049 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3008))) (InsertFields (Ref __iruid_3049) None (GT (If (Let __iruid_3050 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_3049))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3050))) (Ref __iruid_3050))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_3049))) (GetField GT (Ref __iruid_3049))))))) (Ref __iruid_3047)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_3048)) (I32 20)) (False)) (Ref __iruid_3048) (NA Struct{GQ:Int32,GT:Call}))))) (Ref __iruid_3045)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3046))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_3051 (AggLet __iruid_3052 False (GetField GT (Ref __iruid_3046)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_3052)) (I32 2)) (Let __iruid_3053 (ToArray (StreamMap __iruid_3054 (Let __iruid_3055 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_3052)) (ApplyAggOp Count () ())) (StreamMap __iruid_3056 (ToStream False (Ref __iruid_3055)) (MakeTuple (0 1) (GetField key (Ref __iruid_3056)) (GetField value (Ref __iruid_3056))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_3054)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_3054)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_3054))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_3053)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __iruid_3051) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __iruid_3051) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __iruid_3051) (I32 2) (I32 0)) (False)))))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_2986)) (UUID4 __iruid_2413))) (NA String)) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (Literal Struct{} )) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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esidual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_ti_tv_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_insertion_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_insertion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_het_hom_var_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transition_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transversion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64}},n_pcs:+EInt32,used_regressed_metrics:+EBoolean},gnomad_age_distribution:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[+EInt32],n_smaller:+EInt32,n_larger:+EInt32},variant_annotation_descriptions:+EBaseStruct{locus:+EBaseStruct{Description:+EBinary},alleles:+EBaseStruct{Description:+EBinary},rsid:+EBaseStruct{Description:+EBinary},a_index:+EBaseStruct{Description:+EBinary},was_split:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_popmax:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},faf95:+EBaseStruct{Description:+EBinary}}},gnomad_faf:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{faf95:+EBaseStruct{Description:+EBinary},faf99:+EBaseStruct{Description:+EBinary}}},gnomad_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_raw_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_age_hist_het:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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(MakeStream Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_2980))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (Literal Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] )) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_2983)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_2983)))) (Let __iruid_3057 (ToArray (StreamMap __iruid_3058 (ToStream False (Ref __iruid_2985)) (GetField filePath (Ref __iruid_3058)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_3057)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_3057)))) (Let __iruid_3059 (ToArray (StreamMap __iruid_3060 (ToStream False (Ref __iruid_2985)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_3060)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_3059)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_3061 (ToStream False (Ref __iruid_3059)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_3061)) None (firstKey (Literal Struct{} )) (lastKey (Literal Struct{} )))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_2983))) (rows (ToArray (StreamMap __iruid_3062 (ToStream False (Ref __iruid_3059)) (GetField partitionCounts (Ref __iruid_3062))))))))))))))))))))))) 2023-08-16 15:03:55.068 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: before: IR size 682: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_2972 (InsertFields (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (Let __iruid_2973 (ToDict (StreamMap __iruid_2974 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_2974)) (SelectFields (ancestry) (Ref __iruid_2974))))) (Let __iruid_2975 (ToArray (StreamMap __iruid_2976 (ToStream False (GetField __cols (Ref __iruid_2972))) (InsertFields (Ref __iruid_2976) None (__uid_40 (ApplyIR -1 get () Struct{ancestry:String} (Ref __iruid_2973) (MakeStruct (s (GetField s (Ref __iruid_2976))))))))) (Let __iruid_2977 (ToArray (StreamMap __iruid_2978 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2975)) (I32 1)) (Let __iruid_2979 (ArrayRef -1 (Ref __iruid_2975) (Ref __iruid_2978)) (InsertFields (SelectFields () (Ref __iruid_2979)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_2979)))))))) (Let __iruid_2980 (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_2972)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__iruid_1520") (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_2981 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2977)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_2977) (Ref __iruid_2981))) (value (Ref __iruid_2981)))))))) (Let __iruid_2982 (GetField __iruid_1520 (Ref __iruid_2980)) (Let __iruid_2983 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (StreamMap __iruid_2984 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_2982)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_2982) (Ref __iruid_2984)))) (Str "part-0")) (Let __iruid_2985 (CollectDistributedArray matrix_native_writer __iruid_2986 __iruid_2987 (StreamZip -1 AssertSameLength (__iruid_2988 __iruid_2989) (StreamZip -1 AssumeSameLength (__iruid_2990 __iruid_2991) (StreamZip -1 AssumeSameLength (__iruid_2992 __iruid_2993) (StreamMap __iruid_2994 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_2995 (ToStream False (Ref __iruid_2994)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_2995))))) (Let __iruid_2996 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_2997 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_2998 (ToStream False (Ref __iruid_2997)) (ArrayRef -1 (Ref __iruid_2996) (Ref __iruid_2998)))))) (MakeTuple (0 1) (Ref __iruid_2992) (Ref __iruid_2993))) (StreamMap __iruid_2999 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3000 (ToStream False (Ref __iruid_2999)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_3000))))) (MakeTuple (0 1) (Ref __iruid_2990) (Ref __iruid_2991))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_2988)) (writeCtx (Ref __iruid_2989)))) (Let __iruid_3001 (MakeStruct (__iruid_2160 (Ref __iruid_2972)) (__iruid_2405 (Ref __iruid_2980))) (If (IsNA (Ref __iruid_3001)) (NA Struct{__iruid_2160:Struct{__cols:Array[Struct{}]},__iruid_2405:Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}}) (MakeStruct (__iruid_2160 (Let __iruid_3002 (GetField __iruid_2160 (Ref __iruid_3001)) (If (IsNA (Ref __iruid_3002)) (NA Struct{__cols:Array[Struct{}]}) (MakeStruct (__cols (ToArray (StreamMap __iruid_3003 (ToStream False (GetField __cols (Ref __iruid_3002))) (If (IsNA (Ref __iruid_3003)) (NA Struct{}) (Literal Struct{} ))))))))) (__iruid_2405 (Let __iruid_3004 (GetField __iruid_2405 (Ref __iruid_3001)) (If (IsNA (Ref __iruid_3004)) (NA Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}) (MakeStruct (__iruid_1520 (ToArray (StreamMap __iruid_3005 (ToStream False (GetField __iruid_1520 (Ref __iruid_3004))) (If (IsNA (Ref __iruid_3005)) (NA Struct{value:Array[Int32]}) (MakeStruct (value (GetField value (Ref __iruid_3005))))))))))))))) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_3006 (GetField oldCtx (Ref __iruid_2986)) (Let __iruid_3007 (GetField __iruid_2405 (Ref __iruid_2987)) (StreamMap __iruid_3008 (StreamMultiMerge (locus alleles) (Let __iruid_3009 (GetTupleElement 0 (Ref __iruid_3006)) (StreamMap __iruid_3010 (StreamMultiMerge (locus alleles) (StreamFlatMap __iruid_3011 (StreamFilter __iruid_3012 (StreamFlatMap __iruid_3013 (ToStream True (GetTupleElement 0 (Ref __iruid_3009))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3013))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3012))) (I32 2)) (False))) (StreamMap __iruid_3014 (Let __iruid_3015 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3011)) (Let __iruid_3016 (GetField alleles (Ref __iruid_3011)) (Let __iruid_3017 (GetField locus (Ref __iruid_3011)) (Let __iruid_3018 (SelectFields (locus alleles a_index) (Ref __iruid_3011)) (StreamMap __iruid_3019 (ToStream True (ArraySort __iruid_3020 __iruid_3021 (StreamFlatMap __iruid_3022 (StreamFilter __iruid_3023 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_3016)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_3016) (Ref __iruid_3023)) (Str "*"))) (ToStream False (Let __iruid_3024 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_3017) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_3016) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_3016) (Ref __iruid_3022)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_3024)) (Ref __iruid_3017)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_3024))) (locus (GetField locus (Ref __iruid_3024))) (a_index (Ref __iruid_3022)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3011))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_3020)) (False) (If (IsNA (Ref __iruid_3021)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_3020) (Ref __iruid_3021)) (I32 0)))))) (Let __iruid_3025 (InsertFields (Ref __iruid_3018) ("locus" "alleles" "a_index" "__uid_3" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3015)) (__uid_3 (Ref __iruid_3019))) (If (IsNA (Ref __iruid_3025)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3025))) (alleles (GetField alleles (Ref __iruid_3025))) (a_index (GetField a_index (Ref __iruid_3025))) (__uid_3 (Let __iruid_3026 (GetField __uid_3 (Ref __iruid_3025)) (If (IsNA (Ref __iruid_3026)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3026))) (locus (GetField locus (Ref __iruid_3026))) (a_index (GetField a_index (Ref __iruid_3026))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3025))))))))))) (Let __iruid_3027 (If (IsNA (Ref __iruid_3014)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3014))) (alleles (GetField alleles (Ref __iruid_3014))) (a_index (GetField a_index (Ref __iruid_3014))) (__uid_3 (Let __iruid_3028 (GetField __uid_3 (Ref __iruid_3014)) (If (IsNA (Ref __iruid_3028)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3028))) (locus (GetField locus (Ref __iruid_3028))) (a_index (GetField a_index (Ref __iruid_3028))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3014))))) (Let __iruid_3029 (If (IsNA (Ref __iruid_3027)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3027))) (alleles (GetField alleles (Ref __iruid_3027))) (a_index (GetField a_index (Ref __iruid_3027))) (__uid_3 (Let __iruid_3030 (GetField __uid_3 (Ref __iruid_3027)) (If (IsNA (Ref __iruid_3030)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3030))) (locus (GetField locus (Ref __iruid_3030))) (a_index (GetField a_index (Ref __iruid_3030))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3027))))) (InsertFields (Let __iruid_3031 (GetField __uid_3 (Ref __iruid_3029)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_3029)) None (locus (GetField locus (Ref __iruid_3031))) (alleles (GetField alleles (Ref __iruid_3031))) (a_index (GetField a_index (Ref __iruid_3031))) (old_alleles (GetField alleles (Ref __iruid_3029))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3029)))))))) (StreamFlatMap __iruid_3032 (ToStream True (GetTupleElement 1 (Ref __iruid_3009))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_3032)))) (MakeStruct (locus (GetField locus (Ref __iruid_3010))) (alleles (GetField alleles (Ref __iruid_3010))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_3033 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3010))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_3033)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_3033)) (GetField a_index (Ref __iruid_3010)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_3033))) (NA Array[Int32]) (ToArray (StreamMap __iruid_3034 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_3039 __iruid_3040) __iruid_3035 (StreamFilter __iruid_3036 (StreamMap __iruid_3037 (StreamFilter __iruid_3038 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref __iruid_3010)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_3038)) (GetField a_index (Ref __iruid_3010)))) (Ref __iruid_3034))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref __iruid_3033)) (Ref __iruid_3037))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3036)))) (NA Int32) (True) (If (Ref __iruid_3040) (Ref __iruid_3035) (If (ApplyComparisonOp LT (Ref __iruid_3039) (Ref __iruid_3035)) (Ref __iruid_3039) (Ref __iruid_3035))) (False) (Ref __iruid_3039)))))) (GetField GQ (Ref __iruid_3033))))))))))) (StreamFilter __iruid_3041 (StreamFlatMap __iruid_3042 (ToStream True (GetTupleElement 1 (Ref __iruid_3006))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3042))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref __iruid_3041))) (I32 2)) (False)))) (InsertFields (Ref __iruid_3008) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_3043 (GetField __iruid_1520 (Ref __iruid_3007)) (ToArray (StreamMap __iruid_3044 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3043)) (I32 1)) (StreamAgg __iruid_3045 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_3043) (Ref __iruid_3044)))) (AggLet __iruid_3046 False (ArrayRef -1 (ToArray (StreamMap __iruid_3047 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (GetField __iruid_2160 (Ref __iruid_2987)))) (I32 1)) (Let __iruid_3048 (ArrayRef -1 (ToArray (StreamMap __iruid_3049 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3008))) (InsertFields (Ref __iruid_3049) None (GT (If (Let __iruid_3050 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_3049))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3050))) (Ref __iruid_3050))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_3049))) (GetField GT (Ref __iruid_3049))))))) (Ref __iruid_3047)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_3048)) (I32 20)) (False)) (Ref __iruid_3048) (NA Struct{GQ:Int32,GT:Call}))))) (Ref __iruid_3045)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3046))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_3051 (AggLet __iruid_3052 False (GetField GT (Ref __iruid_3046)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_3052)) (I32 2)) (Let __iruid_3053 (ToArray (StreamMap __iruid_3054 (Let __iruid_3055 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_3052)) (ApplyAggOp Count () ())) (StreamMap __iruid_3056 (ToStream False (Ref __iruid_3055)) (MakeTuple (0 1) (GetField key (Ref __iruid_3056)) (GetField value (Ref __iruid_3056))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_3054)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_3054)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_3054))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_3053)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __iruid_3051) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __iruid_3051) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __iruid_3051) (I32 2) (I32 0)) (False)))))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_2986)) (UUID4 __iruid_2413))) (NA String)) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (Literal Struct{} )) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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esidual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_ti_tv_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_insertion_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_insertion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_het_hom_var_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transition_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transversion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64}},n_pcs:+EInt32,used_regressed_metrics:+EBoolean},gnomad_age_distribution:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[+EInt32],n_smaller:+EInt32,n_larger:+EInt32},variant_annotation_descriptions:+EBaseStruct{locus:+EBaseStruct{Description:+EBinary},alleles:+EBaseStruct{Description:+EBinary},rsid:+EBaseStruct{Description:+EBinary},a_index:+EBaseStruct{Description:+EBinary},was_split:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_popmax:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},faf95:+EBaseStruct{Description:+EBinary}}},gnomad_faf:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{faf95:+EBaseStruct{Description:+EBinary},faf99:+EBaseStruct{Description:+EBinary}}},gnomad_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_raw_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_age_hist_het:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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(MakeStream Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_2980))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (Literal Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] )) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_2983)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_2983)))) (Let __iruid_3057 (ToArray (StreamMap __iruid_3058 (ToStream False (Ref __iruid_2985)) (GetField filePath (Ref __iruid_3058)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_3057)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_3057)))) (Let __iruid_3059 (ToArray (StreamMap __iruid_3060 (ToStream False (Ref __iruid_2985)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_3060)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_3059)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_3061 (ToStream False (Ref __iruid_3059)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_3061)) None (firstKey (Literal Struct{} )) (lastKey (Literal Struct{} )))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_2983))) (rows (ToArray (StreamMap __iruid_3062 (ToStream False (Ref __iruid_3059)) (GetField partitionCounts (Ref __iruid_3062))))))))))))))))))))))) 2023-08-16 15:03:55.286 root: INFO: optimize optimize: relationalLowerer, after LowerMatrixToTable: after: IR size 682: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_3443 (InsertFields (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (Let __iruid_3444 (ToDict (StreamMap __iruid_3445 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_3445)) (SelectFields (ancestry) (Ref __iruid_3445))))) (Let __iruid_3446 (ToArray (StreamMap __iruid_3447 (ToStream False (GetField __cols (Ref __iruid_3443))) (InsertFields (Ref __iruid_3447) None (__uid_40 (ApplyIR -1 get () Struct{ancestry:String} (Ref __iruid_3444) (MakeStruct (s (GetField s (Ref __iruid_3447))))))))) (Let __iruid_3448 (ToArray (StreamMap __iruid_3449 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3446)) (I32 1)) (Let __iruid_3450 (ArrayRef -1 (Ref __iruid_3446) (Ref __iruid_3449)) (InsertFields (SelectFields () (Ref __iruid_3450)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_3450)))))))) (Let __iruid_3451 (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_3443)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__iruid_1520") (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_3452 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3448)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_3448) (Ref __iruid_3452))) (value (Ref __iruid_3452)))))))) (Let __iruid_3453 (GetField __iruid_1520 (Ref __iruid_3451)) (Let __iruid_3454 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (StreamMap __iruid_3455 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3453)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_3453) (Ref __iruid_3455)))) (Str "part-0")) (Let __iruid_3456 (CollectDistributedArray matrix_native_writer __iruid_3457 __iruid_3458 (StreamZip -1 AssertSameLength (__iruid_3459 __iruid_3460) (StreamZip -1 AssumeSameLength (__iruid_3461 __iruid_3462) (StreamZip -1 AssumeSameLength (__iruid_3463 __iruid_3464) (StreamMap __iruid_3465 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3466 (ToStream False (Ref __iruid_3465)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_3466))))) (Let __iruid_3467 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_3468 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3469 (ToStream False (Ref __iruid_3468)) (ArrayRef -1 (Ref __iruid_3467) (Ref __iruid_3469)))))) (MakeTuple (0 1) (Ref __iruid_3463) (Ref __iruid_3464))) (StreamMap __iruid_3470 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3471 (ToStream False (Ref __iruid_3470)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_3471))))) (MakeTuple (0 1) (Ref __iruid_3461) (Ref __iruid_3462))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_3459)) (writeCtx (Ref __iruid_3460)))) (Let __iruid_3472 (MakeStruct (__iruid_2160 (Ref __iruid_3443)) (__iruid_2405 (Ref __iruid_3451))) (If (IsNA (Ref __iruid_3472)) (NA Struct{__iruid_2160:Struct{__cols:Array[Struct{}]},__iruid_2405:Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}}) (MakeStruct (__iruid_2160 (Let __iruid_3473 (GetField __iruid_2160 (Ref __iruid_3472)) (If (IsNA (Ref __iruid_3473)) (NA Struct{__cols:Array[Struct{}]}) (MakeStruct (__cols (ToArray (StreamMap __iruid_3474 (ToStream False (GetField __cols (Ref __iruid_3473))) (If (IsNA (Ref __iruid_3474)) (NA Struct{}) (Literal Struct{} ))))))))) (__iruid_2405 (Let __iruid_3475 (GetField __iruid_2405 (Ref __iruid_3472)) (If (IsNA (Ref __iruid_3475)) (NA Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}) (MakeStruct (__iruid_1520 (ToArray (StreamMap __iruid_3476 (ToStream False (GetField __iruid_1520 (Ref __iruid_3475))) (If (IsNA (Ref __iruid_3476)) (NA Struct{value:Array[Int32]}) (MakeStruct (value (GetField value (Ref __iruid_3476))))))))))))))) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_3477 (GetField oldCtx (Ref __iruid_3457)) (Let __iruid_3478 (GetField __iruid_2405 (Ref __iruid_3458)) (StreamMap __iruid_3479 (StreamMultiMerge (locus alleles) (Let __iruid_3480 (GetTupleElement 0 (Ref __iruid_3477)) (StreamMap __iruid_3481 (StreamMultiMerge (locus alleles) (StreamFlatMap __iruid_3482 (StreamFilter __iruid_3483 (StreamFlatMap __iruid_3484 (ToStream True (GetTupleElement 0 (Ref __iruid_3480))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3484))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3483))) (I32 2)) (False))) (StreamMap __iruid_3485 (Let __iruid_3486 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3482)) (Let __iruid_3487 (GetField alleles (Ref __iruid_3482)) (Let __iruid_3488 (GetField locus (Ref __iruid_3482)) (Let __iruid_3489 (SelectFields (locus alleles a_index) (Ref __iruid_3482)) (StreamMap __iruid_3490 (ToStream True (ArraySort __iruid_3491 __iruid_3492 (StreamFlatMap __iruid_3493 (StreamFilter __iruid_3494 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_3487)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_3487) (Ref __iruid_3494)) (Str "*"))) (ToStream False (Let __iruid_3495 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_3488) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_3487) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_3487) (Ref __iruid_3493)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_3495)) (Ref __iruid_3488)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_3495))) (locus (GetField locus (Ref __iruid_3495))) (a_index (Ref __iruid_3493)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3482))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_3491)) (False) (If (IsNA (Ref __iruid_3492)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_3491) (Ref __iruid_3492)) (I32 0)))))) (Let __iruid_3496 (InsertFields (Ref __iruid_3489) ("locus" "alleles" "a_index" "__uid_3" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3486)) (__uid_3 (Ref __iruid_3490))) (If (IsNA (Ref __iruid_3496)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3496))) (alleles (GetField alleles (Ref __iruid_3496))) (a_index (GetField a_index (Ref __iruid_3496))) (__uid_3 (Let __iruid_3497 (GetField __uid_3 (Ref __iruid_3496)) (If (IsNA (Ref __iruid_3497)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3497))) (locus (GetField locus (Ref __iruid_3497))) (a_index (GetField a_index (Ref __iruid_3497))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3496))))))))))) (Let __iruid_3498 (If (IsNA (Ref __iruid_3485)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3485))) (alleles (GetField alleles (Ref __iruid_3485))) (a_index (GetField a_index (Ref __iruid_3485))) (__uid_3 (Let __iruid_3499 (GetField __uid_3 (Ref __iruid_3485)) (If (IsNA (Ref __iruid_3499)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3499))) (locus (GetField locus (Ref __iruid_3499))) (a_index (GetField a_index (Ref __iruid_3499))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3485))))) (Let __iruid_3500 (If (IsNA (Ref __iruid_3498)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3498))) (alleles (GetField alleles (Ref __iruid_3498))) (a_index (GetField a_index (Ref __iruid_3498))) (__uid_3 (Let __iruid_3501 (GetField __uid_3 (Ref __iruid_3498)) (If (IsNA (Ref __iruid_3501)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3501))) (locus (GetField locus (Ref __iruid_3501))) (a_index (GetField a_index (Ref __iruid_3501))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3498))))) (InsertFields (Let __iruid_3502 (GetField __uid_3 (Ref __iruid_3500)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_3500)) None (locus (GetField locus (Ref __iruid_3502))) (alleles (GetField alleles (Ref __iruid_3502))) (a_index (GetField a_index (Ref __iruid_3502))) (old_alleles (GetField alleles (Ref __iruid_3500))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3500)))))))) (StreamFlatMap __iruid_3503 (ToStream True (GetTupleElement 1 (Ref __iruid_3480))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_3503)))) (MakeStruct (locus (GetField locus (Ref __iruid_3481))) (alleles (GetField alleles (Ref __iruid_3481))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_3504 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3481))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_3504)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_3504)) (GetField a_index (Ref __iruid_3481)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_3504))) (NA Array[Int32]) (ToArray (StreamMap __iruid_3505 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_3510 __iruid_3511) __iruid_3506 (StreamFilter __iruid_3507 (StreamMap __iruid_3508 (StreamFilter __iruid_3509 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref __iruid_3481)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_3509)) (GetField a_index (Ref __iruid_3481)))) (Ref __iruid_3505))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref __iruid_3504)) (Ref __iruid_3508))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3507)))) (NA Int32) (True) (If (Ref __iruid_3511) (Ref __iruid_3506) (If (ApplyComparisonOp LT (Ref __iruid_3510) (Ref __iruid_3506)) (Ref __iruid_3510) (Ref __iruid_3506))) (False) (Ref __iruid_3510)))))) (GetField GQ (Ref __iruid_3504))))))))))) (StreamFilter __iruid_3512 (StreamFlatMap __iruid_3513 (ToStream True (GetTupleElement 1 (Ref __iruid_3477))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3513))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref __iruid_3512))) (I32 2)) (False)))) (InsertFields (Ref __iruid_3479) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_3514 (GetField __iruid_1520 (Ref __iruid_3478)) (ToArray (StreamMap __iruid_3515 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3514)) (I32 1)) (StreamAgg __iruid_3516 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_3514) (Ref __iruid_3515)))) (AggLet __iruid_3517 False (ArrayRef -1 (ToArray (StreamMap __iruid_3518 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (GetField __iruid_2160 (Ref __iruid_3458)))) (I32 1)) (Let __iruid_3519 (ArrayRef -1 (ToArray (StreamMap __iruid_3520 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3479))) (InsertFields (Ref __iruid_3520) None (GT (If (Let __iruid_3521 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_3520))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3521))) (Ref __iruid_3521))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_3520))) (GetField GT (Ref __iruid_3520))))))) (Ref __iruid_3518)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_3519)) (I32 20)) (False)) (Ref __iruid_3519) (NA Struct{GQ:Int32,GT:Call}))))) (Ref __iruid_3516)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3517))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_3522 (AggLet __iruid_3523 False (GetField GT (Ref __iruid_3517)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_3523)) (I32 2)) (Let __iruid_3524 (ToArray (StreamMap __iruid_3525 (Let __iruid_3526 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_3523)) (ApplyAggOp Count () ())) (StreamMap __iruid_3527 (ToStream False (Ref __iruid_3526)) (MakeTuple (0 1) (GetField key (Ref __iruid_3527)) (GetField value (Ref __iruid_3527))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_3525)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_3525)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_3525))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_3524)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __iruid_3522) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __iruid_3522) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __iruid_3522) (I32 2) (I32 0)) (False)))))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_3457)) (UUID4 __iruid_2413))) (NA String)) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (Literal Struct{} )) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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esidual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_ti_tv_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_insertion_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_insertion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_het_hom_var_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transition_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transversion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64}},n_pcs:+EInt32,used_regressed_metrics:+EBoolean},gnomad_age_distribution:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[+EInt32],n_smaller:+EInt32,n_larger:+EInt32},variant_annotation_descriptions:+EBaseStruct{locus:+EBaseStruct{Description:+EBinary},alleles:+EBaseStruct{Description:+EBinary},rsid:+EBaseStruct{Description:+EBinary},a_index:+EBaseStruct{Description:+EBinary},was_split:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_popmax:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},faf95:+EBaseStruct{Description:+EBinary}}},gnomad_faf:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{faf95:+EBaseStruct{Description:+EBinary},faf99:+EBaseStruct{Description:+EBinary}}},gnomad_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_raw_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_age_hist_het:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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(MakeStream Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_3451))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (Literal Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] )) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_3454)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_3454)))) (Let __iruid_3528 (ToArray (StreamMap __iruid_3529 (ToStream False (Ref __iruid_3456)) (GetField filePath (Ref __iruid_3529)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_3528)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_3528)))) (Let __iruid_3530 (ToArray (StreamMap __iruid_3531 (ToStream False (Ref __iruid_3456)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_3531)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_3530)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_3532 (ToStream False (Ref __iruid_3530)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_3532)) None (firstKey (Literal Struct{} )) (lastKey (Literal Struct{} )))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_3454))) (rows (ToArray (StreamMap __iruid_3533 (ToStream False (Ref __iruid_3530)) (GetField partitionCounts (Ref __iruid_3533))))))))))))))))))))))) 2023-08-16 15:03:55.366 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: before: IR size 682: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_3443 (InsertFields (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (Let __iruid_3444 (ToDict (StreamMap __iruid_3445 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_3445)) (SelectFields (ancestry) (Ref __iruid_3445))))) (Let __iruid_3446 (ToArray (StreamMap __iruid_3447 (ToStream False (GetField __cols (Ref __iruid_3443))) (InsertFields (Ref __iruid_3447) None (__uid_40 (ApplyIR -1 get () Struct{ancestry:String} (Ref __iruid_3444) (MakeStruct (s (GetField s (Ref __iruid_3447))))))))) (Let __iruid_3448 (ToArray (StreamMap __iruid_3449 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3446)) (I32 1)) (Let __iruid_3450 (ArrayRef -1 (Ref __iruid_3446) (Ref __iruid_3449)) (InsertFields (SelectFields () (Ref __iruid_3450)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_3450)))))))) (Let __iruid_3451 (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_3443)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__iruid_1520") (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_3452 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3448)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_3448) (Ref __iruid_3452))) (value (Ref __iruid_3452)))))))) (Let __iruid_3453 (GetField __iruid_1520 (Ref __iruid_3451)) (Let __iruid_3454 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (StreamMap __iruid_3455 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3453)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_3453) (Ref __iruid_3455)))) (Str "part-0")) (Let __iruid_3456 (CollectDistributedArray matrix_native_writer __iruid_3457 __iruid_3458 (StreamZip -1 AssertSameLength (__iruid_3459 __iruid_3460) (StreamZip -1 AssumeSameLength (__iruid_3461 __iruid_3462) (StreamZip -1 AssumeSameLength (__iruid_3463 __iruid_3464) (StreamMap __iruid_3465 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3466 (ToStream False (Ref __iruid_3465)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_3466))))) (Let __iruid_3467 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_3468 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3469 (ToStream False (Ref __iruid_3468)) (ArrayRef -1 (Ref __iruid_3467) (Ref __iruid_3469)))))) (MakeTuple (0 1) (Ref __iruid_3463) (Ref __iruid_3464))) (StreamMap __iruid_3470 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3471 (ToStream False (Ref __iruid_3470)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_3471))))) (MakeTuple (0 1) (Ref __iruid_3461) (Ref __iruid_3462))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_3459)) (writeCtx (Ref __iruid_3460)))) (Let __iruid_3472 (MakeStruct (__iruid_2160 (Ref __iruid_3443)) (__iruid_2405 (Ref __iruid_3451))) (If (IsNA (Ref __iruid_3472)) (NA Struct{__iruid_2160:Struct{__cols:Array[Struct{}]},__iruid_2405:Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}}) (MakeStruct (__iruid_2160 (Let __iruid_3473 (GetField __iruid_2160 (Ref __iruid_3472)) (If (IsNA (Ref __iruid_3473)) (NA Struct{__cols:Array[Struct{}]}) (MakeStruct (__cols (ToArray (StreamMap __iruid_3474 (ToStream False (GetField __cols (Ref __iruid_3473))) (If (IsNA (Ref __iruid_3474)) (NA Struct{}) (Literal Struct{} ))))))))) (__iruid_2405 (Let __iruid_3475 (GetField __iruid_2405 (Ref __iruid_3472)) (If (IsNA (Ref __iruid_3475)) (NA Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}) (MakeStruct (__iruid_1520 (ToArray (StreamMap __iruid_3476 (ToStream False (GetField __iruid_1520 (Ref __iruid_3475))) (If (IsNA (Ref __iruid_3476)) (NA Struct{value:Array[Int32]}) (MakeStruct (value (GetField value (Ref __iruid_3476))))))))))))))) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_3477 (GetField oldCtx (Ref __iruid_3457)) (Let __iruid_3478 (GetField __iruid_2405 (Ref __iruid_3458)) (StreamMap __iruid_3479 (StreamMultiMerge (locus alleles) (Let __iruid_3480 (GetTupleElement 0 (Ref __iruid_3477)) (StreamMap __iruid_3481 (StreamMultiMerge (locus alleles) (StreamFlatMap __iruid_3482 (StreamFilter __iruid_3483 (StreamFlatMap __iruid_3484 (ToStream True (GetTupleElement 0 (Ref __iruid_3480))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3484))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3483))) (I32 2)) (False))) (StreamMap __iruid_3485 (Let __iruid_3486 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3482)) (Let __iruid_3487 (GetField alleles (Ref __iruid_3482)) (Let __iruid_3488 (GetField locus (Ref __iruid_3482)) (Let __iruid_3489 (SelectFields (locus alleles a_index) (Ref __iruid_3482)) (StreamMap __iruid_3490 (ToStream True (ArraySort __iruid_3491 __iruid_3492 (StreamFlatMap __iruid_3493 (StreamFilter __iruid_3494 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_3487)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_3487) (Ref __iruid_3494)) (Str "*"))) (ToStream False (Let __iruid_3495 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_3488) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_3487) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_3487) (Ref __iruid_3493)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_3495)) (Ref __iruid_3488)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_3495))) (locus (GetField locus (Ref __iruid_3495))) (a_index (Ref __iruid_3493)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3482))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_3491)) (False) (If (IsNA (Ref __iruid_3492)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_3491) (Ref __iruid_3492)) (I32 0)))))) (Let __iruid_3496 (InsertFields (Ref __iruid_3489) ("locus" "alleles" "a_index" "__uid_3" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3486)) (__uid_3 (Ref __iruid_3490))) (If (IsNA (Ref __iruid_3496)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3496))) (alleles (GetField alleles (Ref __iruid_3496))) (a_index (GetField a_index (Ref __iruid_3496))) (__uid_3 (Let __iruid_3497 (GetField __uid_3 (Ref __iruid_3496)) (If (IsNA (Ref __iruid_3497)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3497))) (locus (GetField locus (Ref __iruid_3497))) (a_index (GetField a_index (Ref __iruid_3497))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3496))))))))))) (Let __iruid_3498 (If (IsNA (Ref __iruid_3485)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3485))) (alleles (GetField alleles (Ref __iruid_3485))) (a_index (GetField a_index (Ref __iruid_3485))) (__uid_3 (Let __iruid_3499 (GetField __uid_3 (Ref __iruid_3485)) (If (IsNA (Ref __iruid_3499)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3499))) (locus (GetField locus (Ref __iruid_3499))) (a_index (GetField a_index (Ref __iruid_3499))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3485))))) (Let __iruid_3500 (If (IsNA (Ref __iruid_3498)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3498))) (alleles (GetField alleles (Ref __iruid_3498))) (a_index (GetField a_index (Ref __iruid_3498))) (__uid_3 (Let __iruid_3501 (GetField __uid_3 (Ref __iruid_3498)) (If (IsNA (Ref __iruid_3501)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3501))) (locus (GetField locus (Ref __iruid_3501))) (a_index (GetField a_index (Ref __iruid_3501))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3498))))) (InsertFields (Let __iruid_3502 (GetField __uid_3 (Ref __iruid_3500)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_3500)) None (locus (GetField locus (Ref __iruid_3502))) (alleles (GetField alleles (Ref __iruid_3502))) (a_index (GetField a_index (Ref __iruid_3502))) (old_alleles (GetField alleles (Ref __iruid_3500))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3500)))))))) (StreamFlatMap __iruid_3503 (ToStream True (GetTupleElement 1 (Ref __iruid_3480))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_3503)))) (MakeStruct (locus (GetField locus (Ref __iruid_3481))) (alleles (GetField alleles (Ref __iruid_3481))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_3504 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3481))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_3504)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_3504)) (GetField a_index (Ref __iruid_3481)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_3504))) (NA Array[Int32]) (ToArray (StreamMap __iruid_3505 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_3510 __iruid_3511) __iruid_3506 (StreamFilter __iruid_3507 (StreamMap __iruid_3508 (StreamFilter __iruid_3509 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref __iruid_3481)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_3509)) (GetField a_index (Ref __iruid_3481)))) (Ref __iruid_3505))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref __iruid_3504)) (Ref __iruid_3508))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3507)))) (NA Int32) (True) (If (Ref __iruid_3511) (Ref __iruid_3506) (If (ApplyComparisonOp LT (Ref __iruid_3510) (Ref __iruid_3506)) (Ref __iruid_3510) (Ref __iruid_3506))) (False) (Ref __iruid_3510)))))) (GetField GQ (Ref __iruid_3504))))))))))) (StreamFilter __iruid_3512 (StreamFlatMap __iruid_3513 (ToStream True (GetTupleElement 1 (Ref __iruid_3477))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3513))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref __iruid_3512))) (I32 2)) (False)))) (InsertFields (Ref __iruid_3479) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_3514 (GetField __iruid_1520 (Ref __iruid_3478)) (ToArray (StreamMap __iruid_3515 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3514)) (I32 1)) (StreamAgg __iruid_3516 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_3514) (Ref __iruid_3515)))) (AggLet __iruid_3517 False (ArrayRef -1 (ToArray (StreamMap __iruid_3518 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (GetField __iruid_2160 (Ref __iruid_3458)))) (I32 1)) (Let __iruid_3519 (ArrayRef -1 (ToArray (StreamMap __iruid_3520 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3479))) (InsertFields (Ref __iruid_3520) None (GT (If (Let __iruid_3521 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_3520))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3521))) (Ref __iruid_3521))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_3520))) (GetField GT (Ref __iruid_3520))))))) (Ref __iruid_3518)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_3519)) (I32 20)) (False)) (Ref __iruid_3519) (NA Struct{GQ:Int32,GT:Call}))))) (Ref __iruid_3516)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3517))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_3522 (AggLet __iruid_3523 False (GetField GT (Ref __iruid_3517)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_3523)) (I32 2)) (Let __iruid_3524 (ToArray (StreamMap __iruid_3525 (Let __iruid_3526 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_3523)) (ApplyAggOp Count () ())) (StreamMap __iruid_3527 (ToStream False (Ref __iruid_3526)) (MakeTuple (0 1) (GetField key (Ref __iruid_3527)) (GetField value (Ref __iruid_3527))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_3525)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_3525)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_3525))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_3524)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __iruid_3522) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __iruid_3522) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __iruid_3522) (I32 2) (I32 0)) (False)))))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_3457)) (UUID4 __iruid_2413))) (NA String)) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (Literal Struct{} )) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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esidual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_ti_tv_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_insertion_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_insertion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_het_hom_var_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transition_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transversion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64}},n_pcs:+EInt32,used_regressed_metrics:+EBoolean},gnomad_age_distribution:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[+EInt32],n_smaller:+EInt32,n_larger:+EInt32},variant_annotation_descriptions:+EBaseStruct{locus:+EBaseStruct{Description:+EBinary},alleles:+EBaseStruct{Description:+EBinary},rsid:+EBaseStruct{Description:+EBinary},a_index:+EBaseStruct{Description:+EBinary},was_split:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_popmax:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},faf95:+EBaseStruct{Description:+EBinary}}},gnomad_faf:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{faf95:+EBaseStruct{Description:+EBinary},faf99:+EBaseStruct{Description:+EBinary}}},gnomad_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_raw_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_age_hist_het:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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(MakeStream Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_3451))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (Literal Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] )) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_3454)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_3454)))) (Let __iruid_3528 (ToArray (StreamMap __iruid_3529 (ToStream False (Ref __iruid_3456)) (GetField filePath (Ref __iruid_3529)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_3528)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_3528)))) (Let __iruid_3530 (ToArray (StreamMap __iruid_3531 (ToStream False (Ref __iruid_3456)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_3531)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_3530)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_3532 (ToStream False (Ref __iruid_3530)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_3532)) None (firstKey (Literal Struct{} )) (lastKey (Literal Struct{} )))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_3454))) (rows (ToArray (StreamMap __iruid_3533 (ToStream False (Ref __iruid_3530)) (GetField partitionCounts (Ref __iruid_3533))))))))))))))))))))))) 2023-08-16 15:03:55.589 root: INFO: optimize optimize: relationalLowerer, after InterpretNonCompilable: after: IR size 682: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_3914 (InsertFields (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (Let __iruid_3915 (ToDict (StreamMap __iruid_3916 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_3916)) (SelectFields (ancestry) (Ref __iruid_3916))))) (Let __iruid_3917 (ToArray (StreamMap __iruid_3918 (ToStream False (GetField __cols (Ref __iruid_3914))) (InsertFields (Ref __iruid_3918) None (__uid_40 (ApplyIR -1 get () Struct{ancestry:String} (Ref __iruid_3915) (MakeStruct (s (GetField s (Ref __iruid_3918))))))))) (Let __iruid_3919 (ToArray (StreamMap __iruid_3920 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3917)) (I32 1)) (Let __iruid_3921 (ArrayRef -1 (Ref __iruid_3917) (Ref __iruid_3920)) (InsertFields (SelectFields () (Ref __iruid_3921)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_3921)))))))) (Let __iruid_3922 (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_3914)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__iruid_1520") (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_3923 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3919)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_3919) (Ref __iruid_3923))) (value (Ref __iruid_3923)))))))) (Let __iruid_3924 (GetField __iruid_1520 (Ref __iruid_3922)) (Let __iruid_3925 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (StreamMap __iruid_3926 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3924)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_3924) (Ref __iruid_3926)))) (Str "part-0")) (Let __iruid_3927 (CollectDistributedArray matrix_native_writer __iruid_3928 __iruid_3929 (StreamZip -1 AssertSameLength (__iruid_3930 __iruid_3931) (StreamZip -1 AssumeSameLength (__iruid_3932 __iruid_3933) (StreamZip -1 AssumeSameLength (__iruid_3934 __iruid_3935) (StreamMap __iruid_3936 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3937 (ToStream False (Ref __iruid_3936)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_3937))))) (Let __iruid_3938 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_3939 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3940 (ToStream False (Ref __iruid_3939)) (ArrayRef -1 (Ref __iruid_3938) (Ref __iruid_3940)))))) (MakeTuple (0 1) (Ref __iruid_3934) (Ref __iruid_3935))) (StreamMap __iruid_3941 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3942 (ToStream False (Ref __iruid_3941)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_3942))))) (MakeTuple (0 1) (Ref __iruid_3932) (Ref __iruid_3933))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_3930)) (writeCtx (Ref __iruid_3931)))) (Let __iruid_3943 (MakeStruct (__iruid_2160 (Ref __iruid_3914)) (__iruid_2405 (Ref __iruid_3922))) (If (IsNA (Ref __iruid_3943)) (NA Struct{__iruid_2160:Struct{__cols:Array[Struct{}]},__iruid_2405:Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}}) (MakeStruct (__iruid_2160 (Let __iruid_3944 (GetField __iruid_2160 (Ref __iruid_3943)) (If (IsNA (Ref __iruid_3944)) (NA Struct{__cols:Array[Struct{}]}) (MakeStruct (__cols (ToArray (StreamMap __iruid_3945 (ToStream False (GetField __cols (Ref __iruid_3944))) (If (IsNA (Ref __iruid_3945)) (NA Struct{}) (Literal Struct{} ))))))))) (__iruid_2405 (Let __iruid_3946 (GetField __iruid_2405 (Ref __iruid_3943)) (If (IsNA (Ref __iruid_3946)) (NA Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}) (MakeStruct (__iruid_1520 (ToArray (StreamMap __iruid_3947 (ToStream False (GetField __iruid_1520 (Ref __iruid_3946))) (If (IsNA (Ref __iruid_3947)) (NA Struct{value:Array[Int32]}) (MakeStruct (value (GetField value (Ref __iruid_3947))))))))))))))) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_3948 (GetField oldCtx (Ref __iruid_3928)) (Let __iruid_3949 (GetField __iruid_2405 (Ref __iruid_3929)) (StreamMap __iruid_3950 (StreamMultiMerge (locus alleles) (Let __iruid_3951 (GetTupleElement 0 (Ref __iruid_3948)) (StreamMap __iruid_3952 (StreamMultiMerge (locus alleles) (StreamFlatMap __iruid_3953 (StreamFilter __iruid_3954 (StreamFlatMap __iruid_3955 (ToStream True (GetTupleElement 0 (Ref __iruid_3951))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3955))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3954))) (I32 2)) (False))) (StreamMap __iruid_3956 (Let __iruid_3957 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3953)) (Let __iruid_3958 (GetField alleles (Ref __iruid_3953)) (Let __iruid_3959 (GetField locus (Ref __iruid_3953)) (Let __iruid_3960 (SelectFields (locus alleles a_index) (Ref __iruid_3953)) (StreamMap __iruid_3961 (ToStream True (ArraySort __iruid_3962 __iruid_3963 (StreamFlatMap __iruid_3964 (StreamFilter __iruid_3965 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_3958)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_3958) (Ref __iruid_3965)) (Str "*"))) (ToStream False (Let __iruid_3966 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_3959) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_3958) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_3958) (Ref __iruid_3964)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_3966)) (Ref __iruid_3959)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_3966))) (locus (GetField locus (Ref __iruid_3966))) (a_index (Ref __iruid_3964)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3953))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_3962)) (False) (If (IsNA (Ref __iruid_3963)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_3962) (Ref __iruid_3963)) (I32 0)))))) (Let __iruid_3967 (InsertFields (Ref __iruid_3960) ("locus" "alleles" "a_index" "__uid_3" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3957)) (__uid_3 (Ref __iruid_3961))) (If (IsNA (Ref __iruid_3967)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3967))) (alleles (GetField alleles (Ref __iruid_3967))) (a_index (GetField a_index (Ref __iruid_3967))) (__uid_3 (Let __iruid_3968 (GetField __uid_3 (Ref __iruid_3967)) (If (IsNA (Ref __iruid_3968)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3968))) (locus (GetField locus (Ref __iruid_3968))) (a_index (GetField a_index (Ref __iruid_3968))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3967))))))))))) (Let __iruid_3969 (If (IsNA (Ref __iruid_3956)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3956))) (alleles (GetField alleles (Ref __iruid_3956))) (a_index (GetField a_index (Ref __iruid_3956))) (__uid_3 (Let __iruid_3970 (GetField __uid_3 (Ref __iruid_3956)) (If (IsNA (Ref __iruid_3970)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3970))) (locus (GetField locus (Ref __iruid_3970))) (a_index (GetField a_index (Ref __iruid_3970))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3956))))) (Let __iruid_3971 (If (IsNA (Ref __iruid_3969)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3969))) (alleles (GetField alleles (Ref __iruid_3969))) (a_index (GetField a_index (Ref __iruid_3969))) (__uid_3 (Let __iruid_3972 (GetField __uid_3 (Ref __iruid_3969)) (If (IsNA (Ref __iruid_3972)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3972))) (locus (GetField locus (Ref __iruid_3972))) (a_index (GetField a_index (Ref __iruid_3972))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3969))))) (InsertFields (Let __iruid_3973 (GetField __uid_3 (Ref __iruid_3971)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_3971)) None (locus (GetField locus (Ref __iruid_3973))) (alleles (GetField alleles (Ref __iruid_3973))) (a_index (GetField a_index (Ref __iruid_3973))) (old_alleles (GetField alleles (Ref __iruid_3971))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3971)))))))) (StreamFlatMap __iruid_3974 (ToStream True (GetTupleElement 1 (Ref __iruid_3951))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_3974)))) (MakeStruct (locus (GetField locus (Ref __iruid_3952))) (alleles (GetField alleles (Ref __iruid_3952))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_3975 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3952))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_3975)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_3975)) (GetField a_index (Ref __iruid_3952)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_3975))) (NA Array[Int32]) (ToArray (StreamMap __iruid_3976 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_3981 __iruid_3982) __iruid_3977 (StreamFilter __iruid_3978 (StreamMap __iruid_3979 (StreamFilter __iruid_3980 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref __iruid_3952)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_3980)) (GetField a_index (Ref __iruid_3952)))) (Ref __iruid_3976))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref __iruid_3975)) (Ref __iruid_3979))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3978)))) (NA Int32) (True) (If (Ref __iruid_3982) (Ref __iruid_3977) (If (ApplyComparisonOp LT (Ref __iruid_3981) (Ref __iruid_3977)) (Ref __iruid_3981) (Ref __iruid_3977))) (False) (Ref __iruid_3981)))))) (GetField GQ (Ref __iruid_3975))))))))))) (StreamFilter __iruid_3983 (StreamFlatMap __iruid_3984 (ToStream True (GetTupleElement 1 (Ref __iruid_3948))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3984))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref __iruid_3983))) (I32 2)) (False)))) (InsertFields (Ref __iruid_3950) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_3985 (GetField __iruid_1520 (Ref __iruid_3949)) (ToArray (StreamMap __iruid_3986 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3985)) (I32 1)) (StreamAgg __iruid_3987 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_3985) (Ref __iruid_3986)))) (AggLet __iruid_3988 False (ArrayRef -1 (ToArray (StreamMap __iruid_3989 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (GetField __iruid_2160 (Ref __iruid_3929)))) (I32 1)) (Let __iruid_3990 (ArrayRef -1 (ToArray (StreamMap __iruid_3991 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3950))) (InsertFields (Ref __iruid_3991) None (GT (If (Let __iruid_3992 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_3991))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3992))) (Ref __iruid_3992))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_3991))) (GetField GT (Ref __iruid_3991))))))) (Ref __iruid_3989)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_3990)) (I32 20)) (False)) (Ref __iruid_3990) (NA Struct{GQ:Int32,GT:Call}))))) (Ref __iruid_3987)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3988))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_3993 (AggLet __iruid_3994 False (GetField GT (Ref __iruid_3988)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_3994)) (I32 2)) (Let __iruid_3995 (ToArray (StreamMap __iruid_3996 (Let __iruid_3997 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_3994)) (ApplyAggOp Count () ())) (StreamMap __iruid_3998 (ToStream False (Ref __iruid_3997)) (MakeTuple (0 1) (GetField key (Ref __iruid_3998)) (GetField value (Ref __iruid_3998))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_3996)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_3996)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_3996))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_3995)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __iruid_3993) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __iruid_3993) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __iruid_3993) (I32 2) (I32 0)) (False)))))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_3928)) (UUID4 __iruid_2413))) (NA String)) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (Literal Struct{} )) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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esidual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_ti_tv_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_insertion_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_insertion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_het_hom_var_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transition_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transversion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64}},n_pcs:+EInt32,used_regressed_metrics:+EBoolean},gnomad_age_distribution:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[+EInt32],n_smaller:+EInt32,n_larger:+EInt32},variant_annotation_descriptions:+EBaseStruct{locus:+EBaseStruct{Description:+EBinary},alleles:+EBaseStruct{Description:+EBinary},rsid:+EBaseStruct{Description:+EBinary},a_index:+EBaseStruct{Description:+EBinary},was_split:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_popmax:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},faf95:+EBaseStruct{Description:+EBinary}}},gnomad_faf:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{faf95:+EBaseStruct{Description:+EBinary},faf99:+EBaseStruct{Description:+EBinary}}},gnomad_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_raw_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_age_hist_het:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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(MakeStream Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_3922))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (Literal Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] )) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_3925)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_3925)))) (Let __iruid_3999 (ToArray (StreamMap __iruid_4000 (ToStream False (Ref __iruid_3927)) (GetField filePath (Ref __iruid_4000)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_3999)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_3999)))) (Let __iruid_4001 (ToArray (StreamMap __iruid_4002 (ToStream False (Ref __iruid_3927)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_4002)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_4001)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_4003 (ToStream False (Ref __iruid_4001)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_4003)) None (firstKey (Literal Struct{} )) (lastKey (Literal Struct{} )))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_3925))) (rows (ToArray (StreamMap __iruid_4004 (ToStream False (Ref __iruid_4001)) (GetField partitionCounts (Ref __iruid_4004))))))))))))))))))))))) 2023-08-16 15:03:55.612 BlockManagerInfo: INFO: Removed broadcast_7_piece0 on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 in memory (size: 327.8 KiB, free: 22.0 GiB) 2023-08-16 15:03:55.627 BlockManagerInfo: INFO: Removed broadcast_7_piece0 on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal:39013 in memory (size: 327.8 KiB, free: 5.2 GiB) 2023-08-16 15:03:55.639 BlockManagerInfo: INFO: Removed broadcast_5_piece0 on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 in memory (size: 62.0 B, free: 22.0 GiB) 2023-08-16 15:03:55.643 BlockManagerInfo: INFO: Removed broadcast_5_piece0 on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal:39013 in memory (size: 62.0 B, free: 5.2 GiB) 2023-08-16 15:03:55.679 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 682: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_3914 (InsertFields (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (Let __iruid_3915 (ToDict (StreamMap __iruid_3916 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_3916)) (SelectFields (ancestry) (Ref __iruid_3916))))) (Let __iruid_3917 (ToArray (StreamMap __iruid_3918 (ToStream False (GetField __cols (Ref __iruid_3914))) (InsertFields (Ref __iruid_3918) None (__uid_40 (ApplyIR -1 get () Struct{ancestry:String} (Ref __iruid_3915) (MakeStruct (s (GetField s (Ref __iruid_3918))))))))) (Let __iruid_3919 (ToArray (StreamMap __iruid_3920 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3917)) (I32 1)) (Let __iruid_3921 (ArrayRef -1 (Ref __iruid_3917) (Ref __iruid_3920)) (InsertFields (SelectFields () (Ref __iruid_3921)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_3921)))))))) (Let __iruid_3922 (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_3914)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__iruid_1520") (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_3923 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3919)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_3919) (Ref __iruid_3923))) (value (Ref __iruid_3923)))))))) (Let __iruid_3924 (GetField __iruid_1520 (Ref __iruid_3922)) (Let __iruid_3925 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (StreamMap __iruid_3926 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3924)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_3924) (Ref __iruid_3926)))) (Str "part-0")) (Let __iruid_3927 (CollectDistributedArray matrix_native_writer __iruid_3928 __iruid_3929 (StreamZip -1 AssertSameLength (__iruid_3930 __iruid_3931) (StreamZip -1 AssumeSameLength (__iruid_3932 __iruid_3933) (StreamZip -1 AssumeSameLength (__iruid_3934 __iruid_3935) (StreamMap __iruid_3936 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3937 (ToStream False (Ref __iruid_3936)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_3937))))) (Let __iruid_3938 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_3939 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3940 (ToStream False (Ref __iruid_3939)) (ArrayRef -1 (Ref __iruid_3938) (Ref __iruid_3940)))))) (MakeTuple (0 1) (Ref __iruid_3934) (Ref __iruid_3935))) (StreamMap __iruid_3941 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_3942 (ToStream False (Ref __iruid_3941)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_3942))))) (MakeTuple (0 1) (Ref __iruid_3932) (Ref __iruid_3933))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_3930)) (writeCtx (Ref __iruid_3931)))) (Let __iruid_3943 (MakeStruct (__iruid_2160 (Ref __iruid_3914)) (__iruid_2405 (Ref __iruid_3922))) (If (IsNA (Ref __iruid_3943)) (NA Struct{__iruid_2160:Struct{__cols:Array[Struct{}]},__iruid_2405:Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}}) (MakeStruct (__iruid_2160 (Let __iruid_3944 (GetField __iruid_2160 (Ref __iruid_3943)) (If (IsNA (Ref __iruid_3944)) (NA Struct{__cols:Array[Struct{}]}) (MakeStruct (__cols (ToArray (StreamMap __iruid_3945 (ToStream False (GetField __cols (Ref __iruid_3944))) (If (IsNA (Ref __iruid_3945)) (NA Struct{}) (Literal Struct{} ))))))))) (__iruid_2405 (Let __iruid_3946 (GetField __iruid_2405 (Ref __iruid_3943)) (If (IsNA (Ref __iruid_3946)) (NA Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}) (MakeStruct (__iruid_1520 (ToArray (StreamMap __iruid_3947 (ToStream False (GetField __iruid_1520 (Ref __iruid_3946))) (If (IsNA (Ref __iruid_3947)) (NA Struct{value:Array[Int32]}) (MakeStruct (value (GetField value (Ref __iruid_3947))))))))))))))) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_3948 (GetField oldCtx (Ref __iruid_3928)) (Let __iruid_3949 (GetField __iruid_2405 (Ref __iruid_3929)) (StreamMap __iruid_3950 (StreamMultiMerge (locus alleles) (Let __iruid_3951 (GetTupleElement 0 (Ref __iruid_3948)) (StreamMap __iruid_3952 (StreamMultiMerge (locus alleles) (StreamFlatMap __iruid_3953 (StreamFilter __iruid_3954 (StreamFlatMap __iruid_3955 (ToStream True (GetTupleElement 0 (Ref __iruid_3951))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3955))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3954))) (I32 2)) (False))) (StreamMap __iruid_3956 (Let __iruid_3957 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3953)) (Let __iruid_3958 (GetField alleles (Ref __iruid_3953)) (Let __iruid_3959 (GetField locus (Ref __iruid_3953)) (Let __iruid_3960 (SelectFields (locus alleles a_index) (Ref __iruid_3953)) (StreamMap __iruid_3961 (ToStream True (ArraySort __iruid_3962 __iruid_3963 (StreamFlatMap __iruid_3964 (StreamFilter __iruid_3965 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_3958)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_3958) (Ref __iruid_3965)) (Str "*"))) (ToStream False (Let __iruid_3966 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_3959) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_3958) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_3958) (Ref __iruid_3964)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_3966)) (Ref __iruid_3959)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_3966))) (locus (GetField locus (Ref __iruid_3966))) (a_index (Ref __iruid_3964)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_3953))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_3962)) (False) (If (IsNA (Ref __iruid_3963)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_3962) (Ref __iruid_3963)) (I32 0)))))) (Let __iruid_3967 (InsertFields (Ref __iruid_3960) ("locus" "alleles" "a_index" "__uid_3" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3957)) (__uid_3 (Ref __iruid_3961))) (If (IsNA (Ref __iruid_3967)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3967))) (alleles (GetField alleles (Ref __iruid_3967))) (a_index (GetField a_index (Ref __iruid_3967))) (__uid_3 (Let __iruid_3968 (GetField __uid_3 (Ref __iruid_3967)) (If (IsNA (Ref __iruid_3968)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3968))) (locus (GetField locus (Ref __iruid_3968))) (a_index (GetField a_index (Ref __iruid_3968))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3967))))))))))) (Let __iruid_3969 (If (IsNA (Ref __iruid_3956)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3956))) (alleles (GetField alleles (Ref __iruid_3956))) (a_index (GetField a_index (Ref __iruid_3956))) (__uid_3 (Let __iruid_3970 (GetField __uid_3 (Ref __iruid_3956)) (If (IsNA (Ref __iruid_3970)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3970))) (locus (GetField locus (Ref __iruid_3970))) (a_index (GetField a_index (Ref __iruid_3970))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3956))))) (Let __iruid_3971 (If (IsNA (Ref __iruid_3969)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_3969))) (alleles (GetField alleles (Ref __iruid_3969))) (a_index (GetField a_index (Ref __iruid_3969))) (__uid_3 (Let __iruid_3972 (GetField __uid_3 (Ref __iruid_3969)) (If (IsNA (Ref __iruid_3972)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_3972))) (locus (GetField locus (Ref __iruid_3972))) (a_index (GetField a_index (Ref __iruid_3972))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3969))))) (InsertFields (Let __iruid_3973 (GetField __uid_3 (Ref __iruid_3971)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_3971)) None (locus (GetField locus (Ref __iruid_3973))) (alleles (GetField alleles (Ref __iruid_3973))) (a_index (GetField a_index (Ref __iruid_3973))) (old_alleles (GetField alleles (Ref __iruid_3971))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3971)))))))) (StreamFlatMap __iruid_3974 (ToStream True (GetTupleElement 1 (Ref __iruid_3951))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_3974)))) (MakeStruct (locus (GetField locus (Ref __iruid_3952))) (alleles (GetField alleles (Ref __iruid_3952))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_3975 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3952))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_3975)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_3975)) (GetField a_index (Ref __iruid_3952)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_3975))) (NA Array[Int32]) (ToArray (StreamMap __iruid_3976 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_3981 __iruid_3982) __iruid_3977 (StreamFilter __iruid_3978 (StreamMap __iruid_3979 (StreamFilter __iruid_3980 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref __iruid_3952)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_3980)) (GetField a_index (Ref __iruid_3952)))) (Ref __iruid_3976))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref __iruid_3975)) (Ref __iruid_3979))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3978)))) (NA Int32) (True) (If (Ref __iruid_3982) (Ref __iruid_3977) (If (ApplyComparisonOp LT (Ref __iruid_3981) (Ref __iruid_3977)) (Ref __iruid_3981) (Ref __iruid_3977))) (False) (Ref __iruid_3981)))))) (GetField GQ (Ref __iruid_3975))))))))))) (StreamFilter __iruid_3983 (StreamFlatMap __iruid_3984 (ToStream True (GetTupleElement 1 (Ref __iruid_3948))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_3984))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref __iruid_3983))) (I32 2)) (False)))) (InsertFields (Ref __iruid_3950) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_3985 (GetField __iruid_1520 (Ref __iruid_3949)) (ToArray (StreamMap __iruid_3986 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_3985)) (I32 1)) (StreamAgg __iruid_3987 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_3985) (Ref __iruid_3986)))) (AggLet __iruid_3988 False (ArrayRef -1 (ToArray (StreamMap __iruid_3989 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (GetField __iruid_2160 (Ref __iruid_3929)))) (I32 1)) (Let __iruid_3990 (ArrayRef -1 (ToArray (StreamMap __iruid_3991 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_3950))) (InsertFields (Ref __iruid_3991) None (GT (If (Let __iruid_3992 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_3991))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3992))) (Ref __iruid_3992))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_3991))) (GetField GT (Ref __iruid_3991))))))) (Ref __iruid_3989)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_3990)) (I32 20)) (False)) (Ref __iruid_3990) (NA Struct{GQ:Int32,GT:Call}))))) (Ref __iruid_3987)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_3988))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_3993 (AggLet __iruid_3994 False (GetField GT (Ref __iruid_3988)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_3994)) (I32 2)) (Let __iruid_3995 (ToArray (StreamMap __iruid_3996 (Let __iruid_3997 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_3994)) (ApplyAggOp Count () ())) (StreamMap __iruid_3998 (ToStream False (Ref __iruid_3997)) (MakeTuple (0 1) (GetField key (Ref __iruid_3998)) (GetField value (Ref __iruid_3998))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_3996)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_3996)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_3996))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_3995)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __iruid_3993) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __iruid_3993) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __iruid_3993) (I32 2) (I32 0)) (False)))))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_3928)) (UUID4 __iruid_2413))) (NA String)) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (Literal Struct{} )) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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esidual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_ti_tv_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_insertion_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_insertion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_het_hom_var_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transition_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transversion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64}},n_pcs:+EInt32,used_regressed_metrics:+EBoolean},gnomad_age_distribution:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[+EInt32],n_smaller:+EInt32,n_larger:+EInt32},variant_annotation_descriptions:+EBaseStruct{locus:+EBaseStruct{Description:+EBinary},alleles:+EBaseStruct{Description:+EBinary},rsid:+EBaseStruct{Description:+EBinary},a_index:+EBaseStruct{Description:+EBinary},was_split:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_popmax:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},faf95:+EBaseStruct{Description:+EBinary}}},gnomad_faf:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{faf95:+EBaseStruct{Description:+EBinary},faf99:+EBaseStruct{Description:+EBinary}}},gnomad_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_raw_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_age_hist_het:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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(MakeStream Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_3922))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (Literal Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] )) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_3925)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_3925)))) (Let __iruid_3999 (ToArray (StreamMap __iruid_4000 (ToStream False (Ref __iruid_3927)) (GetField filePath (Ref __iruid_4000)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_3999)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_3999)))) (Let __iruid_4001 (ToArray (StreamMap __iruid_4002 (ToStream False (Ref __iruid_3927)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_4002)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_4001)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_4003 (ToStream False (Ref __iruid_4001)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_4003)) None (firstKey (Literal Struct{} )) (lastKey (Literal Struct{} )))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_3925))) (rows (ToArray (StreamMap __iruid_4004 (ToStream False (Ref __iruid_4001)) (GetField partitionCounts (Ref __iruid_4004))))))))))))))))))))))) 2023-08-16 15:03:55.871 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 682: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_4385 (InsertFields (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (Let __iruid_4386 (ToDict (StreamMap __iruid_4387 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_4387)) (SelectFields (ancestry) (Ref __iruid_4387))))) (Let __iruid_4388 (ToArray (StreamMap __iruid_4389 (ToStream False (GetField __cols (Ref __iruid_4385))) (InsertFields (Ref __iruid_4389) None (__uid_40 (ApplyIR -1 get () Struct{ancestry:String} (Ref __iruid_4386) (MakeStruct (s (GetField s (Ref __iruid_4389))))))))) (Let __iruid_4390 (ToArray (StreamMap __iruid_4391 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4388)) (I32 1)) (Let __iruid_4392 (ArrayRef -1 (Ref __iruid_4388) (Ref __iruid_4391)) (InsertFields (SelectFields () (Ref __iruid_4392)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_4392)))))))) (Let __iruid_4393 (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_4385)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__iruid_1520") (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_4394 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4390)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_4390) (Ref __iruid_4394))) (value (Ref __iruid_4394)))))))) (Let __iruid_4395 (GetField __iruid_1520 (Ref __iruid_4393)) (Let __iruid_4396 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (StreamMap __iruid_4397 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4395)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_4395) (Ref __iruid_4397)))) (Str "part-0")) (Let __iruid_4398 (CollectDistributedArray matrix_native_writer __iruid_4399 __iruid_4400 (StreamZip -1 AssertSameLength (__iruid_4401 __iruid_4402) (StreamZip -1 AssumeSameLength (__iruid_4403 __iruid_4404) (StreamZip -1 AssumeSameLength (__iruid_4405 __iruid_4406) (StreamMap __iruid_4407 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4408 (ToStream False (Ref __iruid_4407)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_4408))))) (Let __iruid_4409 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_4410 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4411 (ToStream False (Ref __iruid_4410)) (ArrayRef -1 (Ref __iruid_4409) (Ref __iruid_4411)))))) (MakeTuple (0 1) (Ref __iruid_4405) (Ref __iruid_4406))) (StreamMap __iruid_4412 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4413 (ToStream False (Ref __iruid_4412)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_4413))))) (MakeTuple (0 1) (Ref __iruid_4403) (Ref __iruid_4404))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_4401)) (writeCtx (Ref __iruid_4402)))) (Let __iruid_4414 (MakeStruct (__iruid_2160 (Ref __iruid_4385)) (__iruid_2405 (Ref __iruid_4393))) (If (IsNA (Ref __iruid_4414)) (NA Struct{__iruid_2160:Struct{__cols:Array[Struct{}]},__iruid_2405:Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}}) (MakeStruct (__iruid_2160 (Let __iruid_4415 (GetField __iruid_2160 (Ref __iruid_4414)) (If (IsNA (Ref __iruid_4415)) (NA Struct{__cols:Array[Struct{}]}) (MakeStruct (__cols (ToArray (StreamMap __iruid_4416 (ToStream False (GetField __cols (Ref __iruid_4415))) (If (IsNA (Ref __iruid_4416)) (NA Struct{}) (Literal Struct{} ))))))))) (__iruid_2405 (Let __iruid_4417 (GetField __iruid_2405 (Ref __iruid_4414)) (If (IsNA (Ref __iruid_4417)) (NA Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}) (MakeStruct (__iruid_1520 (ToArray (StreamMap __iruid_4418 (ToStream False (GetField __iruid_1520 (Ref __iruid_4417))) (If (IsNA (Ref __iruid_4418)) (NA Struct{value:Array[Int32]}) (MakeStruct (value (GetField value (Ref __iruid_4418))))))))))))))) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_4419 (GetField oldCtx (Ref __iruid_4399)) (Let __iruid_4420 (GetField __iruid_2405 (Ref __iruid_4400)) (StreamMap __iruid_4421 (StreamMultiMerge (locus alleles) (Let __iruid_4422 (GetTupleElement 0 (Ref __iruid_4419)) (StreamMap __iruid_4423 (StreamMultiMerge (locus alleles) (StreamFlatMap __iruid_4424 (StreamFilter __iruid_4425 (StreamFlatMap __iruid_4426 (ToStream True (GetTupleElement 0 (Ref __iruid_4422))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_4426))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_4425))) (I32 2)) (False))) (StreamMap __iruid_4427 (Let __iruid_4428 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4424)) (Let __iruid_4429 (GetField alleles (Ref __iruid_4424)) (Let __iruid_4430 (GetField locus (Ref __iruid_4424)) (Let __iruid_4431 (SelectFields (locus alleles a_index) (Ref __iruid_4424)) (StreamMap __iruid_4432 (ToStream True (ArraySort __iruid_4433 __iruid_4434 (StreamFlatMap __iruid_4435 (StreamFilter __iruid_4436 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_4429)) (I32 1)) (ApplyComparisonOp NEQ (ApplyIR 3 indexArray () String (Ref __iruid_4429) (Ref __iruid_4436)) (Str "*"))) (ToStream False (Let __iruid_4437 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_4430) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_4429) (I32 0)) (ApplyIR 8 indexArray () String (Ref __iruid_4429) (Ref __iruid_4435)))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_4437)) (Ref __iruid_4430)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_4437))) (locus (GetField locus (Ref __iruid_4437))) (a_index (Ref __iruid_4435)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_4424))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_4433)) (False) (If (IsNA (Ref __iruid_4434)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_4433) (Ref __iruid_4434)) (I32 0)))))) (Let __iruid_4438 (InsertFields (Ref __iruid_4431) ("locus" "alleles" "a_index" "__uid_3" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4428)) (__uid_3 (Ref __iruid_4432))) (If (IsNA (Ref __iruid_4438)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4438))) (alleles (GetField alleles (Ref __iruid_4438))) (a_index (GetField a_index (Ref __iruid_4438))) (__uid_3 (Let __iruid_4439 (GetField __uid_3 (Ref __iruid_4438)) (If (IsNA (Ref __iruid_4439)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4439))) (locus (GetField locus (Ref __iruid_4439))) (a_index (GetField a_index (Ref __iruid_4439))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4438))))))))))) (Let __iruid_4440 (If (IsNA (Ref __iruid_4427)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4427))) (alleles (GetField alleles (Ref __iruid_4427))) (a_index (GetField a_index (Ref __iruid_4427))) (__uid_3 (Let __iruid_4441 (GetField __uid_3 (Ref __iruid_4427)) (If (IsNA (Ref __iruid_4441)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4441))) (locus (GetField locus (Ref __iruid_4441))) (a_index (GetField a_index (Ref __iruid_4441))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4427))))) (Let __iruid_4442 (If (IsNA (Ref __iruid_4440)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4440))) (alleles (GetField alleles (Ref __iruid_4440))) (a_index (GetField a_index (Ref __iruid_4440))) (__uid_3 (Let __iruid_4443 (GetField __uid_3 (Ref __iruid_4440)) (If (IsNA (Ref __iruid_4443)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4443))) (locus (GetField locus (Ref __iruid_4443))) (a_index (GetField a_index (Ref __iruid_4443))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4440))))) (InsertFields (Let __iruid_4444 (GetField __uid_3 (Ref __iruid_4442)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_4442)) None (locus (GetField locus (Ref __iruid_4444))) (alleles (GetField alleles (Ref __iruid_4444))) (a_index (GetField a_index (Ref __iruid_4444))) (old_alleles (GetField alleles (Ref __iruid_4442))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4442)))))))) (StreamFlatMap __iruid_4445 (ToStream True (GetTupleElement 1 (Ref __iruid_4422))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_4445)))) (MakeStruct (locus (GetField locus (Ref __iruid_4423))) (alleles (GetField alleles (Ref __iruid_4423))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_4446 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4423))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_4446)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_4446)) (GetField a_index (Ref __iruid_4423)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_4446))) (NA Array[Int32]) (ToArray (StreamMap __iruid_4447 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_4452 __iruid_4453) __iruid_4448 (StreamFilter __iruid_4449 (StreamMap __iruid_4450 (StreamFilter __iruid_4451 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref __iruid_4423)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_4451)) (GetField a_index (Ref __iruid_4423)))) (Ref __iruid_4447))) (ApplyIR 26 indexArray () Int32 (GetField PL (Ref __iruid_4446)) (Ref __iruid_4450))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4449)))) (NA Int32) (True) (If (Ref __iruid_4453) (Ref __iruid_4448) (If (ApplyComparisonOp LT (Ref __iruid_4452) (Ref __iruid_4448)) (Ref __iruid_4452) (Ref __iruid_4448))) (False) (Ref __iruid_4452)))))) (GetField GQ (Ref __iruid_4446))))))))))) (StreamFilter __iruid_4454 (StreamFlatMap __iruid_4455 (ToStream True (GetTupleElement 1 (Ref __iruid_4419))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_4455))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref __iruid_4454))) (I32 2)) (False)))) (InsertFields (Ref __iruid_4421) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_4456 (GetField __iruid_1520 (Ref __iruid_4420)) (ToArray (StreamMap __iruid_4457 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4456)) (I32 1)) (StreamAgg __iruid_4458 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_4456) (Ref __iruid_4457)))) (AggLet __iruid_4459 False (ArrayRef -1 (ToArray (StreamMap __iruid_4460 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (GetField __iruid_2160 (Ref __iruid_4400)))) (I32 1)) (Let __iruid_4461 (ArrayRef -1 (ToArray (StreamMap __iruid_4462 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4421))) (InsertFields (Ref __iruid_4462) None (GT (If (Let __iruid_4463 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_4462))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4463))) (Ref __iruid_4463))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_4462))) (GetField GT (Ref __iruid_4462))))))) (Ref __iruid_4460)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_4461)) (I32 20)) (False)) (Ref __iruid_4461) (NA Struct{GQ:Int32,GT:Call}))))) (Ref __iruid_4458)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4459))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_4464 (AggLet __iruid_4465 False (GetField GT (Ref __iruid_4459)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_4465)) (I32 2)) (Let __iruid_4466 (ToArray (StreamMap __iruid_4467 (Let __iruid_4468 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_4465)) (ApplyAggOp Count () ())) (StreamMap __iruid_4469 (ToStream False (Ref __iruid_4468)) (MakeTuple (0 1) (GetField key (Ref __iruid_4469)) (GetField value (Ref __iruid_4469))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_4467)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_4467)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_4467))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_4466)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (ApplyIR 41 get () Int32 (Ref __iruid_4464) (I32 0) (I32 0)) (ApplyIR 42 get () Int32 (Ref __iruid_4464) (I32 1) (I32 0)) (ApplyIR 43 get () Int32 (Ref __iruid_4464) (I32 2) (I32 0)) (False)))))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_4399)) (UUID4 __iruid_2413))) (NA String)) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (Literal Struct{} )) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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esidual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_ti_tv_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_insertion_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_insertion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_het_hom_var_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transition_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transversion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64}},n_pcs:+EInt32,used_regressed_metrics:+EBoolean},gnomad_age_distribution:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[+EInt32],n_smaller:+EInt32,n_larger:+EInt32},variant_annotation_descriptions:+EBaseStruct{locus:+EBaseStruct{Description:+EBinary},alleles:+EBaseStruct{Description:+EBinary},rsid:+EBaseStruct{Description:+EBinary},a_index:+EBaseStruct{Description:+EBinary},was_split:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_popmax:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},faf95:+EBaseStruct{Description:+EBinary}}},gnomad_faf:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{faf95:+EBaseStruct{Description:+EBinary},faf99:+EBaseStruct{Description:+EBinary}}},gnomad_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_raw_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_age_hist_het:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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(MakeStream Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_4393))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (Literal Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] )) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_4396)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_4396)))) (Let __iruid_4470 (ToArray (StreamMap __iruid_4471 (ToStream False (Ref __iruid_4398)) (GetField filePath (Ref __iruid_4471)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_4470)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_4470)))) (Let __iruid_4472 (ToArray (StreamMap __iruid_4473 (ToStream False (Ref __iruid_4398)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_4473)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_4472)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_4474 (ToStream False (Ref __iruid_4472)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_4474)) None (firstKey (Literal Struct{} )) (lastKey (Literal Struct{} )))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_4396))) (rows (ToArray (StreamMap __iruid_4475 (ToStream False (Ref __iruid_4472)) (GetField partitionCounts (Ref __iruid_4475))))))))))))))))))))))) 2023-08-16 15:03:55.929 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 841: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_4385 (InsertFields (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (Let __iruid_4386 (ToDict (StreamMap __iruid_4387 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_4387)) (SelectFields (ancestry) (Ref __iruid_4387))))) (Let __iruid_4388 (ToArray (StreamMap __iruid_4389 (ToStream False (GetField __cols (Ref __iruid_4385))) (InsertFields (Ref __iruid_4389) None (__uid_40 (Let __iruid_4500 (Ref __iruid_4386) (Let __iruid_4501 (MakeStruct (s (GetField s (Ref __iruid_4389)))) (If (IsNA (Ref __iruid_4500)) (NA Struct{ancestry:String}) (Let __iruid_4502 (LowerBoundOnOrderedCollection True (Ref __iruid_4500) (Ref __iruid_4501)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4502) (ArrayLen (CastToArray (Ref __iruid_4500)))) (NA Struct{ancestry:String}) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4500)) (Ref __iruid_4502))) (Ref __iruid_4501)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4500)) (Ref __iruid_4502))) (NA Struct{ancestry:String}))))))))))) (Let __iruid_4390 (ToArray (StreamMap __iruid_4391 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4388)) (I32 1)) (Let __iruid_4392 (ArrayRef -1 (Ref __iruid_4388) (Ref __iruid_4391)) (InsertFields (SelectFields () (Ref __iruid_4392)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_4392)))))))) (Let __iruid_4393 (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_4385)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__iruid_1520") (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_4394 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4390)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_4390) (Ref __iruid_4394))) (value (Ref __iruid_4394)))))))) (Let __iruid_4395 (GetField __iruid_1520 (Ref __iruid_4393)) (Let __iruid_4396 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (StreamMap __iruid_4397 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4395)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_4395) (Ref __iruid_4397)))) (Str "part-0")) (Let __iruid_4398 (CollectDistributedArray matrix_native_writer __iruid_4399 __iruid_4400 (StreamZip -1 AssertSameLength (__iruid_4401 __iruid_4402) (StreamZip -1 AssumeSameLength (__iruid_4403 __iruid_4404) (StreamZip -1 AssumeSameLength (__iruid_4405 __iruid_4406) (StreamMap __iruid_4407 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4408 (ToStream False (Ref __iruid_4407)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_4408))))) (Let __iruid_4409 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_4410 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4411 (ToStream False (Ref __iruid_4410)) (ArrayRef -1 (Ref __iruid_4409) (Ref __iruid_4411)))))) (MakeTuple (0 1) (Ref __iruid_4405) (Ref __iruid_4406))) (StreamMap __iruid_4412 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4413 (ToStream False (Ref __iruid_4412)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_4413))))) (MakeTuple (0 1) (Ref __iruid_4403) (Ref __iruid_4404))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_4401)) (writeCtx (Ref __iruid_4402)))) (Let __iruid_4414 (MakeStruct (__iruid_2160 (Ref __iruid_4385)) (__iruid_2405 (Ref __iruid_4393))) (If (IsNA (Ref __iruid_4414)) (NA Struct{__iruid_2160:Struct{__cols:Array[Struct{}]},__iruid_2405:Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}}) (MakeStruct (__iruid_2160 (Let __iruid_4415 (GetField __iruid_2160 (Ref __iruid_4414)) (If (IsNA (Ref __iruid_4415)) (NA Struct{__cols:Array[Struct{}]}) (MakeStruct (__cols (ToArray (StreamMap __iruid_4416 (ToStream False (GetField __cols (Ref __iruid_4415))) (If (IsNA (Ref __iruid_4416)) (NA Struct{}) (Literal Struct{} ))))))))) (__iruid_2405 (Let __iruid_4417 (GetField __iruid_2405 (Ref __iruid_4414)) (If (IsNA (Ref __iruid_4417)) (NA Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}) (MakeStruct (__iruid_1520 (ToArray (StreamMap __iruid_4418 (ToStream False (GetField __iruid_1520 (Ref __iruid_4417))) (If (IsNA (Ref __iruid_4418)) (NA Struct{value:Array[Int32]}) (MakeStruct (value (GetField value (Ref __iruid_4418))))))))))))))) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_4419 (GetField oldCtx (Ref __iruid_4399)) (Let __iruid_4420 (GetField __iruid_2405 (Ref __iruid_4400)) (StreamMap __iruid_4421 (StreamMultiMerge (locus alleles) (Let __iruid_4422 (GetTupleElement 0 (Ref __iruid_4419)) (StreamMap __iruid_4423 (StreamMultiMerge (locus alleles) (StreamFlatMap __iruid_4424 (StreamFilter __iruid_4425 (StreamFlatMap __iruid_4426 (ToStream True (GetTupleElement 0 (Ref __iruid_4422))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_4426))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_4425))) (I32 2)) (False))) (StreamMap __iruid_4427 (Let __iruid_4428 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4424)) (Let __iruid_4429 (GetField alleles (Ref __iruid_4424)) (Let __iruid_4430 (GetField locus (Ref __iruid_4424)) (Let __iruid_4431 (SelectFields (locus alleles a_index) (Ref __iruid_4424)) (StreamMap __iruid_4432 (ToStream True (ArraySort __iruid_4433 __iruid_4434 (StreamFlatMap __iruid_4435 (StreamFilter __iruid_4436 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_4429)) (I32 1)) (ApplyComparisonOp NEQ (Let __iruid_4507 (Ref __iruid_4429) (Let __iruid_4508 (Ref __iruid_4436) (ArrayRef 3 (Ref __iruid_4507) (If (ApplyComparisonOp LT (Ref __iruid_4508) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_4507)) (Ref __iruid_4508)) (Ref __iruid_4508))))) (Str "*"))) (ToStream False (Let __iruid_4437 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_4430) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_4429) (I32 0)) (Let __iruid_4503 (Ref __iruid_4429) (Let __iruid_4504 (Ref __iruid_4435) (ArrayRef 8 (Ref __iruid_4503) (If (ApplyComparisonOp LT (Ref __iruid_4504) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_4503)) (Ref __iruid_4504)) (Ref __iruid_4504))))))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_4437)) (Ref __iruid_4430)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_4437))) (locus (GetField locus (Ref __iruid_4437))) (a_index (Ref __iruid_4435)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_4424))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_4433)) (False) (If (IsNA (Ref __iruid_4434)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_4433) (Ref __iruid_4434)) (I32 0)))))) (Let __iruid_4438 (InsertFields (Ref __iruid_4431) ("locus" "alleles" "a_index" "__uid_3" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4428)) (__uid_3 (Ref __iruid_4432))) (If (IsNA (Ref __iruid_4438)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4438))) (alleles (GetField alleles (Ref __iruid_4438))) (a_index (GetField a_index (Ref __iruid_4438))) (__uid_3 (Let __iruid_4439 (GetField __uid_3 (Ref __iruid_4438)) (If (IsNA (Ref __iruid_4439)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4439))) (locus (GetField locus (Ref __iruid_4439))) (a_index (GetField a_index (Ref __iruid_4439))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4438))))))))))) (Let __iruid_4440 (If (IsNA (Ref __iruid_4427)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4427))) (alleles (GetField alleles (Ref __iruid_4427))) (a_index (GetField a_index (Ref __iruid_4427))) (__uid_3 (Let __iruid_4441 (GetField __uid_3 (Ref __iruid_4427)) (If (IsNA (Ref __iruid_4441)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4441))) (locus (GetField locus (Ref __iruid_4441))) (a_index (GetField a_index (Ref __iruid_4441))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4427))))) (Let __iruid_4442 (If (IsNA (Ref __iruid_4440)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4440))) (alleles (GetField alleles (Ref __iruid_4440))) (a_index (GetField a_index (Ref __iruid_4440))) (__uid_3 (Let __iruid_4443 (GetField __uid_3 (Ref __iruid_4440)) (If (IsNA (Ref __iruid_4443)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4443))) (locus (GetField locus (Ref __iruid_4443))) (a_index (GetField a_index (Ref __iruid_4443))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4440))))) (InsertFields (Let __iruid_4444 (GetField __uid_3 (Ref __iruid_4442)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_4442)) None (locus (GetField locus (Ref __iruid_4444))) (alleles (GetField alleles (Ref __iruid_4444))) (a_index (GetField a_index (Ref __iruid_4444))) (old_alleles (GetField alleles (Ref __iruid_4442))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4442)))))))) (StreamFlatMap __iruid_4445 (ToStream True (GetTupleElement 1 (Ref __iruid_4422))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_4445)))) (MakeStruct (locus (GetField locus (Ref __iruid_4423))) (alleles (GetField alleles (Ref __iruid_4423))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_4446 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4423))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_4446)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_4446)) (GetField a_index (Ref __iruid_4423)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_4446))) (NA Array[Int32]) (ToArray (StreamMap __iruid_4447 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_4452 __iruid_4453) __iruid_4448 (StreamFilter __iruid_4449 (StreamMap __iruid_4450 (StreamFilter __iruid_4451 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref __iruid_4423)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_4451)) (GetField a_index (Ref __iruid_4423)))) (Ref __iruid_4447))) (Let __iruid_4505 (GetField PL (Ref __iruid_4446)) (Let __iruid_4506 (Ref __iruid_4450) (ArrayRef 26 (Ref __iruid_4505) (If (ApplyComparisonOp LT (Ref __iruid_4506) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_4505)) (Ref __iruid_4506)) (Ref __iruid_4506)))))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4449)))) (NA Int32) (True) (If (Ref __iruid_4453) (Ref __iruid_4448) (If (ApplyComparisonOp LT (Ref __iruid_4452) (Ref __iruid_4448)) (Ref __iruid_4452) (Ref __iruid_4448))) (False) (Ref __iruid_4452)))))) (GetField GQ (Ref __iruid_4446))))))))))) (StreamFilter __iruid_4454 (StreamFlatMap __iruid_4455 (ToStream True (GetTupleElement 1 (Ref __iruid_4419))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_4455))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref __iruid_4454))) (I32 2)) (False)))) (InsertFields (Ref __iruid_4421) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_4456 (GetField __iruid_1520 (Ref __iruid_4420)) (ToArray (StreamMap __iruid_4457 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4456)) (I32 1)) (StreamAgg __iruid_4458 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_4456) (Ref __iruid_4457)))) (AggLet __iruid_4459 False (ArrayRef -1 (ToArray (StreamMap __iruid_4460 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (GetField __iruid_2160 (Ref __iruid_4400)))) (I32 1)) (Let __iruid_4461 (ArrayRef -1 (ToArray (StreamMap __iruid_4462 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4421))) (InsertFields (Ref __iruid_4462) None (GT (If (Let __iruid_4463 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_4462))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4463))) (Ref __iruid_4463))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_4462))) (GetField GT (Ref __iruid_4462))))))) (Ref __iruid_4460)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_4461)) (I32 20)) (False)) (Ref __iruid_4461) (NA Struct{GQ:Int32,GT:Call}))))) (Ref __iruid_4458)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4459))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_4464 (AggLet __iruid_4465 False (GetField GT (Ref __iruid_4459)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_4465)) (I32 2)) (Let __iruid_4466 (ToArray (StreamMap __iruid_4467 (Let __iruid_4468 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_4465)) (ApplyAggOp Count () ())) (StreamMap __iruid_4469 (ToStream False (Ref __iruid_4468)) (MakeTuple (0 1) (GetField key (Ref __iruid_4469)) (GetField value (Ref __iruid_4469))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_4467)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_4467)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_4467))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_4466)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (Let __iruid_4509 (Ref __iruid_4464) (Let __iruid_4510 (I32 0) (Let __iruid_4511 (I32 0) (If (IsNA (Ref __iruid_4509)) (NA Int32) (Let __iruid_4512 (LowerBoundOnOrderedCollection True (Ref __iruid_4509) (Ref __iruid_4510)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4512) (ArrayLen (CastToArray (Ref __iruid_4509)))) (Ref __iruid_4511) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4509)) (Ref __iruid_4512))) (Ref __iruid_4510)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4509)) (Ref __iruid_4512))) (Ref __iruid_4511)))))))) (Let __iruid_4513 (Ref __iruid_4464) (Let __iruid_4514 (I32 1) (Let __iruid_4515 (I32 0) (If (IsNA (Ref __iruid_4513)) (NA Int32) (Let __iruid_4516 (LowerBoundOnOrderedCollection True (Ref __iruid_4513) (Ref __iruid_4514)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4516) (ArrayLen (CastToArray (Ref __iruid_4513)))) (Ref __iruid_4515) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4513)) (Ref __iruid_4516))) (Ref __iruid_4514)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4513)) (Ref __iruid_4516))) (Ref __iruid_4515)))))))) (Let __iruid_4517 (Ref __iruid_4464) (Let __iruid_4518 (I32 2) (Let __iruid_4519 (I32 0) (If (IsNA (Ref __iruid_4517)) (NA Int32) (Let __iruid_4520 (LowerBoundOnOrderedCollection True (Ref __iruid_4517) (Ref __iruid_4518)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4520) (ArrayLen (CastToArray (Ref __iruid_4517)))) (Ref __iruid_4519) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4517)) (Ref __iruid_4520))) (Ref __iruid_4518)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4517)) (Ref __iruid_4520))) (Ref __iruid_4519)))))))) (False)))))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_4399)) (UUID4 __iruid_2413))) (NA String)) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (Literal Struct{} )) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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esidual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_ti_tv_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_insertion_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_insertion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_het_hom_var_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transition_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transversion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64}},n_pcs:+EInt32,used_regressed_metrics:+EBoolean},gnomad_age_distribution:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[+EInt32],n_smaller:+EInt32,n_larger:+EInt32},variant_annotation_descriptions:+EBaseStruct{locus:+EBaseStruct{Description:+EBinary},alleles:+EBaseStruct{Description:+EBinary},rsid:+EBaseStruct{Description:+EBinary},a_index:+EBaseStruct{Description:+EBinary},was_split:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_popmax:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},faf95:+EBaseStruct{Description:+EBinary}}},gnomad_faf:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{faf95:+EBaseStruct{Description:+EBinary},faf99:+EBaseStruct{Description:+EBinary}}},gnomad_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_raw_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_age_hist_het:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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(MakeStream Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_4393))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (Literal Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] )) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_4396)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_4396)))) (Let __iruid_4470 (ToArray (StreamMap __iruid_4471 (ToStream False (Ref __iruid_4398)) (GetField filePath (Ref __iruid_4471)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_4470)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_4470)))) (Let __iruid_4472 (ToArray (StreamMap __iruid_4473 (ToStream False (Ref __iruid_4398)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_4473)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_4472)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_4474 (ToStream False (Ref __iruid_4472)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_4474)) None (firstKey (Literal Struct{} )) (lastKey (Literal Struct{} )))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_4396))) (rows (ToArray (StreamMap __iruid_4475 (ToStream False (Ref __iruid_4472)) (GetField partitionCounts (Ref __iruid_4475))))))))))))))))))))))) 2023-08-16 15:03:56.118 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 811: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_4730 (InsertFields (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (Let __iruid_4731 (ToDict (StreamMap __iruid_4732 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_4732)) (SelectFields (ancestry) (Ref __iruid_4732))))) (Let __iruid_4733 (ToArray (StreamMap __iruid_4734 (ToStream False (GetField __cols (Ref __iruid_4730))) (InsertFields (Ref __iruid_4734) None (__uid_40 (Let __iruid_4735 (MakeStruct (s (GetField s (Ref __iruid_4734)))) (If (IsNA (Ref __iruid_4731)) (NA Struct{ancestry:String}) (Let __iruid_4736 (LowerBoundOnOrderedCollection True (Ref __iruid_4731) (Ref __iruid_4735)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4736) (ArrayLen (CastToArray (Ref __iruid_4731)))) (NA Struct{ancestry:String}) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4731)) (Ref __iruid_4736))) (Ref __iruid_4735)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4731)) (Ref __iruid_4736))) (NA Struct{ancestry:String})))))))))) (Let __iruid_4737 (ToArray (StreamMap __iruid_4738 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4733)) (I32 1)) (Let __iruid_4739 (ArrayRef -1 (Ref __iruid_4733) (Ref __iruid_4738)) (InsertFields (SelectFields () (Ref __iruid_4739)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_4739)))))))) (Let __iruid_4740 (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_4730)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__iruid_1520") (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_4741 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4737)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_4737) (Ref __iruid_4741))) (value (Ref __iruid_4741)))))))) (Let __iruid_4742 (GetField __iruid_1520 (Ref __iruid_4740)) (Let __iruid_4743 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (StreamMap __iruid_4744 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4742)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_4742) (Ref __iruid_4744)))) (Str "part-0")) (Let __iruid_4745 (CollectDistributedArray matrix_native_writer __iruid_4746 __iruid_4747 (StreamZip -1 AssertSameLength (__iruid_4748 __iruid_4749) (StreamZip -1 AssumeSameLength (__iruid_4750 __iruid_4751) (StreamZip -1 AssumeSameLength (__iruid_4752 __iruid_4753) (StreamMap __iruid_4754 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4755 (ToStream False (Ref __iruid_4754)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_4755))))) (Let __iruid_4756 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_4757 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4758 (ToStream False (Ref __iruid_4757)) (ArrayRef -1 (Ref __iruid_4756) (Ref __iruid_4758)))))) (MakeTuple (0 1) (Ref __iruid_4752) (Ref __iruid_4753))) (StreamMap __iruid_4759 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4760 (ToStream False (Ref __iruid_4759)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_4760))))) (MakeTuple (0 1) (Ref __iruid_4750) (Ref __iruid_4751))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_4748)) (writeCtx (Ref __iruid_4749)))) (Let __iruid_4761 (MakeStruct (__iruid_2160 (Ref __iruid_4730)) (__iruid_2405 (Ref __iruid_4740))) (If (IsNA (Ref __iruid_4761)) (NA Struct{__iruid_2160:Struct{__cols:Array[Struct{}]},__iruid_2405:Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}}) (MakeStruct (__iruid_2160 (Let __iruid_4762 (GetField __iruid_2160 (Ref __iruid_4761)) (If (IsNA (Ref __iruid_4762)) (NA Struct{__cols:Array[Struct{}]}) (MakeStruct (__cols (ToArray (StreamMap __iruid_4763 (ToStream False (GetField __cols (Ref __iruid_4762))) (If (IsNA (Ref __iruid_4763)) (NA Struct{}) (Literal Struct{} ))))))))) (__iruid_2405 (Let __iruid_4764 (GetField __iruid_2405 (Ref __iruid_4761)) (If (IsNA (Ref __iruid_4764)) (NA Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}) (MakeStruct (__iruid_1520 (ToArray (StreamMap __iruid_4765 (ToStream False (GetField __iruid_1520 (Ref __iruid_4764))) (If (IsNA (Ref __iruid_4765)) (NA Struct{value:Array[Int32]}) (MakeStruct (value (GetField value (Ref __iruid_4765))))))))))))))) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_4766 (GetField oldCtx (Ref __iruid_4746)) (Let __iruid_4767 (GetField __iruid_2405 (Ref __iruid_4747)) (StreamMap __iruid_4768 (StreamMultiMerge (locus alleles) (Let __iruid_4769 (GetTupleElement 0 (Ref __iruid_4766)) (StreamMap __iruid_4770 (StreamMultiMerge (locus alleles) (StreamFlatMap __iruid_4771 (StreamFilter __iruid_4772 (StreamFlatMap __iruid_4773 (ToStream True (GetTupleElement 0 (Ref __iruid_4769))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_4773))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_4772))) (I32 2)) (False))) (StreamMap __iruid_4774 (Let __iruid_4775 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4771)) (Let __iruid_4776 (GetField alleles (Ref __iruid_4771)) (Let __iruid_4777 (GetField locus (Ref __iruid_4771)) (Let __iruid_4778 (SelectFields (locus alleles a_index) (Ref __iruid_4771)) (StreamMap __iruid_4779 (ToStream True (ArraySort __iruid_4780 __iruid_4781 (StreamFlatMap __iruid_4782 (StreamFilter __iruid_4783 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_4776)) (I32 1)) (ApplyComparisonOp NEQ (ArrayRef 3 (Ref __iruid_4776) (If (ApplyComparisonOp LT (Ref __iruid_4783) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_4776)) (Ref __iruid_4783)) (Ref __iruid_4783))) (Str "*"))) (ToStream False (Let __iruid_4784 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_4777) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_4776) (I32 0)) (ArrayRef 8 (Ref __iruid_4776) (If (ApplyComparisonOp LT (Ref __iruid_4782) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_4776)) (Ref __iruid_4782)) (Ref __iruid_4782))))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_4784)) (Ref __iruid_4777)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_4784))) (locus (GetField locus (Ref __iruid_4784))) (a_index (Ref __iruid_4782)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_4771))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_4780)) (False) (If (IsNA (Ref __iruid_4781)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_4780) (Ref __iruid_4781)) (I32 0)))))) (Let __iruid_4785 (InsertFields (Ref __iruid_4778) ("locus" "alleles" "a_index" "__uid_3" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4775)) (__uid_3 (Ref __iruid_4779))) (If (IsNA (Ref __iruid_4785)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4785))) (alleles (GetField alleles (Ref __iruid_4785))) (a_index (GetField a_index (Ref __iruid_4785))) (__uid_3 (Let __iruid_4786 (GetField __uid_3 (Ref __iruid_4785)) (If (IsNA (Ref __iruid_4786)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4786))) (locus (GetField locus (Ref __iruid_4786))) (a_index (GetField a_index (Ref __iruid_4786))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4785))))))))))) (Let __iruid_4787 (If (IsNA (Ref __iruid_4774)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4774))) (alleles (GetField alleles (Ref __iruid_4774))) (a_index (GetField a_index (Ref __iruid_4774))) (__uid_3 (Let __iruid_4788 (GetField __uid_3 (Ref __iruid_4774)) (If (IsNA (Ref __iruid_4788)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4788))) (locus (GetField locus (Ref __iruid_4788))) (a_index (GetField a_index (Ref __iruid_4788))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4774))))) (Let __iruid_4789 (If (IsNA (Ref __iruid_4787)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4787))) (alleles (GetField alleles (Ref __iruid_4787))) (a_index (GetField a_index (Ref __iruid_4787))) (__uid_3 (Let __iruid_4790 (GetField __uid_3 (Ref __iruid_4787)) (If (IsNA (Ref __iruid_4790)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4790))) (locus (GetField locus (Ref __iruid_4790))) (a_index (GetField a_index (Ref __iruid_4790))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4787))))) (InsertFields (Let __iruid_4791 (GetField __uid_3 (Ref __iruid_4789)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_4789)) None (locus (GetField locus (Ref __iruid_4791))) (alleles (GetField alleles (Ref __iruid_4791))) (a_index (GetField a_index (Ref __iruid_4791))) (old_alleles (GetField alleles (Ref __iruid_4789))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4789)))))))) (StreamFlatMap __iruid_4792 (ToStream True (GetTupleElement 1 (Ref __iruid_4769))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_4792)))) (MakeStruct (locus (GetField locus (Ref __iruid_4770))) (alleles (GetField alleles (Ref __iruid_4770))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_4793 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4770))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_4793)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_4793)) (GetField a_index (Ref __iruid_4770)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_4793))) (NA Array[Int32]) (ToArray (StreamMap __iruid_4794 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_4800 __iruid_4801) __iruid_4795 (StreamFilter __iruid_4796 (StreamMap __iruid_4797 (StreamFilter __iruid_4798 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref __iruid_4770)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_4798)) (GetField a_index (Ref __iruid_4770)))) (Ref __iruid_4794))) (Let __iruid_4799 (GetField PL (Ref __iruid_4793)) (ArrayRef 26 (Ref __iruid_4799) (If (ApplyComparisonOp LT (Ref __iruid_4797) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_4799)) (Ref __iruid_4797)) (Ref __iruid_4797))))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4796)))) (NA Int32) (True) (If (Ref __iruid_4801) (Ref __iruid_4795) (If (ApplyComparisonOp LT (Ref __iruid_4800) (Ref __iruid_4795)) (Ref __iruid_4800) (Ref __iruid_4795))) (False) (Ref __iruid_4800)))))) (GetField GQ (Ref __iruid_4793))))))))))) (StreamFilter __iruid_4802 (StreamFlatMap __iruid_4803 (ToStream True (GetTupleElement 1 (Ref __iruid_4766))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_4803))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref __iruid_4802))) (I32 2)) (False)))) (InsertFields (Ref __iruid_4768) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_4804 (GetField __iruid_1520 (Ref __iruid_4767)) (ToArray (StreamMap __iruid_4805 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4804)) (I32 1)) (StreamAgg __iruid_4806 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_4804) (Ref __iruid_4805)))) (AggLet __iruid_4807 False (ArrayRef -1 (ToArray (StreamMap __iruid_4808 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (GetField __iruid_2160 (Ref __iruid_4747)))) (I32 1)) (Let __iruid_4809 (ArrayRef -1 (ToArray (StreamMap __iruid_4810 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4768))) (InsertFields (Ref __iruid_4810) None (GT (If (Let __iruid_4811 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_4810))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4811))) (Ref __iruid_4811))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_4810))) (GetField GT (Ref __iruid_4810))))))) (Ref __iruid_4808)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_4809)) (I32 20)) (False)) (Ref __iruid_4809) (NA Struct{GQ:Int32,GT:Call}))))) (Ref __iruid_4806)) (AggFilter False (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4807))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_4812 (AggLet __iruid_4813 False (GetField GT (Ref __iruid_4807)) (AggFilter False (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_4813)) (I32 2)) (Let __iruid_4814 (ToArray (StreamMap __iruid_4815 (Let __iruid_4816 (AggGroupBy False (Apply 36 nNonRefAlleles () Int32 (Ref __iruid_4813)) (ApplyAggOp Count () ())) (StreamMap __iruid_4817 (ToStream False (Ref __iruid_4816)) (MakeTuple (0 1) (GetField key (Ref __iruid_4817)) (GetField value (Ref __iruid_4817))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_4815)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_4815)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_4815))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_4814)))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (If (IsNA (Ref __iruid_4812)) (NA Int32) (Let __iruid_4818 (LowerBoundOnOrderedCollection True (Ref __iruid_4812) (I32 0)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4818) (ArrayLen (CastToArray (Ref __iruid_4812)))) (I32 0) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4818))) (I32 0)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4818))) (I32 0))))) (If (IsNA (Ref __iruid_4812)) (NA Int32) (Let __iruid_4819 (LowerBoundOnOrderedCollection True (Ref __iruid_4812) (I32 1)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4819) (ArrayLen (CastToArray (Ref __iruid_4812)))) (I32 0) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4819))) (I32 1)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4819))) (I32 0))))) (If (IsNA (Ref __iruid_4812)) (NA Int32) (Let __iruid_4820 (LowerBoundOnOrderedCollection True (Ref __iruid_4812) (I32 2)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4820) (ArrayLen (CastToArray (Ref __iruid_4812)))) (I32 0) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4820))) (I32 2)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4820))) (I32 0))))) (False)))))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_4746)) (UUID4 __iruid_2413))) (NA String)) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (Literal Struct{} )) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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esidual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_ti_tv_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_insertion_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_insertion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_het_hom_var_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transition_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transversion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64}},n_pcs:+EInt32,used_regressed_metrics:+EBoolean},gnomad_age_distribution:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[+EInt32],n_smaller:+EInt32,n_larger:+EInt32},variant_annotation_descriptions:+EBaseStruct{locus:+EBaseStruct{Description:+EBinary},alleles:+EBaseStruct{Description:+EBinary},rsid:+EBaseStruct{Description:+EBinary},a_index:+EBaseStruct{Description:+EBinary},was_split:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_popmax:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},faf95:+EBaseStruct{Description:+EBinary}}},gnomad_faf:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{faf95:+EBaseStruct{Description:+EBinary},faf99:+EBaseStruct{Description:+EBinary}}},gnomad_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_raw_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_age_hist_het:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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(MakeStream Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_4740))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (Literal Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] )) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_4743)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_4743)))) (Let __iruid_4821 (ToArray (StreamMap __iruid_4822 (ToStream False (Ref __iruid_4745)) (GetField filePath (Ref __iruid_4822)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_4821)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_4821)))) (Let __iruid_4823 (ToArray (StreamMap __iruid_4824 (ToStream False (Ref __iruid_4745)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_4824)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_4823)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_4825 (ToStream False (Ref __iruid_4823)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_4825)) None (firstKey (Literal Struct{} )) (lastKey (Literal Struct{} )))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_4743))) (rows (ToArray (StreamMap __iruid_4826 (ToStream False (Ref __iruid_4823)) (GetField partitionCounts (Ref __iruid_4826))))))))))))))))))))))) 2023-08-16 15:03:56.320 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 837: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_4730 (InsertFields (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (Let __iruid_4731 (ToDict (StreamMap __iruid_4732 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_4732)) (SelectFields (ancestry) (Ref __iruid_4732))))) (Let __iruid_4733 (ToArray (StreamMap __iruid_4734 (ToStream False (GetField __cols (Ref __iruid_4730))) (InsertFields (Ref __iruid_4734) None (__uid_40 (Let __iruid_4735 (MakeStruct (s (GetField s (Ref __iruid_4734)))) (If (IsNA (Ref __iruid_4731)) (NA Struct{ancestry:String}) (Let __iruid_4736 (LowerBoundOnOrderedCollection True (Ref __iruid_4731) (Ref __iruid_4735)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4736) (ArrayLen (CastToArray (Ref __iruid_4731)))) (NA Struct{ancestry:String}) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4731)) (Ref __iruid_4736))) (Ref __iruid_4735)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4731)) (Ref __iruid_4736))) (NA Struct{ancestry:String})))))))))) (Let __iruid_4737 (ToArray (StreamMap __iruid_4738 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4733)) (I32 1)) (Let __iruid_4739 (ArrayRef -1 (Ref __iruid_4733) (Ref __iruid_4738)) (InsertFields (SelectFields () (Ref __iruid_4739)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_4739)))))))) (Let __iruid_4740 (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_4730)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__iruid_1520") (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_4741 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4737)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_4737) (Ref __iruid_4741))) (value (Ref __iruid_4741)))))))) (Let __iruid_4742 (GetField __iruid_1520 (Ref __iruid_4740)) (Let __iruid_4743 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (StreamMap __iruid_4744 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4742)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_4742) (Ref __iruid_4744)))) (Str "part-0")) (Let __iruid_4745 (CollectDistributedArray matrix_native_writer __iruid_4746 __iruid_4747 (StreamZip -1 AssertSameLength (__iruid_4748 __iruid_4749) (StreamZip -1 AssumeSameLength (__iruid_4750 __iruid_4751) (StreamZip -1 AssumeSameLength (__iruid_4752 __iruid_4753) (StreamMap __iruid_4754 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4755 (ToStream False (Ref __iruid_4754)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_4755))))) (Let __iruid_4756 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_4757 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4758 (ToStream False (Ref __iruid_4757)) (ArrayRef -1 (Ref __iruid_4756) (Ref __iruid_4758)))))) (MakeTuple (0 1) (Ref __iruid_4752) (Ref __iruid_4753))) (StreamMap __iruid_4759 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_4760 (ToStream False (Ref __iruid_4759)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_4760))))) (MakeTuple (0 1) (Ref __iruid_4750) (Ref __iruid_4751))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_4748)) (writeCtx (Ref __iruid_4749)))) (Let __iruid_4761 (MakeStruct (__iruid_2160 (Ref __iruid_4730)) (__iruid_2405 (Ref __iruid_4740))) (If (IsNA (Ref __iruid_4761)) (NA Struct{__iruid_2160:Struct{__cols:Array[Struct{}]},__iruid_2405:Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}}) (MakeStruct (__iruid_2160 (Let __iruid_4762 (GetField __iruid_2160 (Ref __iruid_4761)) (If (IsNA (Ref __iruid_4762)) (NA Struct{__cols:Array[Struct{}]}) (MakeStruct (__cols (ToArray (StreamMap __iruid_4763 (ToStream False (GetField __cols (Ref __iruid_4762))) (If (IsNA (Ref __iruid_4763)) (NA Struct{}) (Literal Struct{} ))))))))) (__iruid_2405 (Let __iruid_4764 (GetField __iruid_2405 (Ref __iruid_4761)) (If (IsNA (Ref __iruid_4764)) (NA Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}) (MakeStruct (__iruid_1520 (ToArray (StreamMap __iruid_4765 (ToStream False (GetField __iruid_1520 (Ref __iruid_4764))) (If (IsNA (Ref __iruid_4765)) (NA Struct{value:Array[Int32]}) (MakeStruct (value (GetField value (Ref __iruid_4765))))))))))))))) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_4766 (GetField oldCtx (Ref __iruid_4746)) (Let __iruid_4767 (GetField __iruid_2405 (Ref __iruid_4747)) (StreamMap __iruid_4768 (StreamMultiMerge (locus alleles) (Let __iruid_4769 (GetTupleElement 0 (Ref __iruid_4766)) (StreamMap __iruid_4770 (StreamMultiMerge (locus alleles) (StreamFlatMap __iruid_4771 (StreamFilter __iruid_4772 (StreamFlatMap __iruid_4773 (ToStream True (GetTupleElement 0 (Ref __iruid_4769))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_4773))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_4772))) (I32 2)) (False))) (StreamMap __iruid_4774 (Let __iruid_4775 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4771)) (Let __iruid_4776 (GetField alleles (Ref __iruid_4771)) (Let __iruid_4777 (GetField locus (Ref __iruid_4771)) (Let __iruid_4778 (SelectFields (locus alleles a_index) (Ref __iruid_4771)) (StreamMap __iruid_4779 (ToStream True (ArraySort __iruid_4780 __iruid_4781 (StreamFlatMap __iruid_4782 (StreamFilter __iruid_4783 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_4776)) (I32 1)) (ApplyComparisonOp NEQ (ArrayRef 3 (Ref __iruid_4776) (If (ApplyComparisonOp LT (Ref __iruid_4783) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_4776)) (Ref __iruid_4783)) (Ref __iruid_4783))) (Str "*"))) (ToStream False (Let __iruid_4784 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_4777) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_4776) (I32 0)) (ArrayRef 8 (Ref __iruid_4776) (If (ApplyComparisonOp LT (Ref __iruid_4782) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_4776)) (Ref __iruid_4782)) (Ref __iruid_4782))))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_4784)) (Ref __iruid_4777)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_4784))) (locus (GetField locus (Ref __iruid_4784))) (a_index (Ref __iruid_4782)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_4771))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_4780)) (False) (If (IsNA (Ref __iruid_4781)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_4780) (Ref __iruid_4781)) (I32 0)))))) (Let __iruid_4785 (InsertFields (Ref __iruid_4778) ("locus" "alleles" "a_index" "__uid_3" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4775)) (__uid_3 (Ref __iruid_4779))) (If (IsNA (Ref __iruid_4785)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4785))) (alleles (GetField alleles (Ref __iruid_4785))) (a_index (GetField a_index (Ref __iruid_4785))) (__uid_3 (Let __iruid_4786 (GetField __uid_3 (Ref __iruid_4785)) (If (IsNA (Ref __iruid_4786)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4786))) (locus (GetField locus (Ref __iruid_4786))) (a_index (GetField a_index (Ref __iruid_4786))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4785))))))))))) (Let __iruid_4787 (If (IsNA (Ref __iruid_4774)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4774))) (alleles (GetField alleles (Ref __iruid_4774))) (a_index (GetField a_index (Ref __iruid_4774))) (__uid_3 (Let __iruid_4788 (GetField __uid_3 (Ref __iruid_4774)) (If (IsNA (Ref __iruid_4788)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4788))) (locus (GetField locus (Ref __iruid_4788))) (a_index (GetField a_index (Ref __iruid_4788))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4774))))) (Let __iruid_4789 (If (IsNA (Ref __iruid_4787)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_4787))) (alleles (GetField alleles (Ref __iruid_4787))) (a_index (GetField a_index (Ref __iruid_4787))) (__uid_3 (Let __iruid_4790 (GetField __uid_3 (Ref __iruid_4787)) (If (IsNA (Ref __iruid_4790)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_4790))) (locus (GetField locus (Ref __iruid_4790))) (a_index (GetField a_index (Ref __iruid_4790))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4787))))) (InsertFields (Let __iruid_4791 (GetField __uid_3 (Ref __iruid_4789)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_4789)) None (locus (GetField locus (Ref __iruid_4791))) (alleles (GetField alleles (Ref __iruid_4791))) (a_index (GetField a_index (Ref __iruid_4791))) (old_alleles (GetField alleles (Ref __iruid_4789))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4789)))))))) (StreamFlatMap __iruid_4792 (ToStream True (GetTupleElement 1 (Ref __iruid_4769))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_4792)))) (MakeStruct (locus (GetField locus (Ref __iruid_4770))) (alleles (GetField alleles (Ref __iruid_4770))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_4793 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4770))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_4793)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_4793)) (GetField a_index (Ref __iruid_4770)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_4793))) (NA Array[Int32]) (ToArray (StreamMap __iruid_4794 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_4800 __iruid_4801) __iruid_4795 (StreamFilter __iruid_4796 (StreamMap __iruid_4797 (StreamFilter __iruid_4798 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref __iruid_4770)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_4798)) (GetField a_index (Ref __iruid_4770)))) (Ref __iruid_4794))) (Let __iruid_4799 (GetField PL (Ref __iruid_4793)) (ArrayRef 26 (Ref __iruid_4799) (If (ApplyComparisonOp LT (Ref __iruid_4797) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_4799)) (Ref __iruid_4797)) (Ref __iruid_4797))))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4796)))) (NA Int32) (True) (If (Ref __iruid_4801) (Ref __iruid_4795) (If (ApplyComparisonOp LT (Ref __iruid_4800) (Ref __iruid_4795)) (Ref __iruid_4800) (Ref __iruid_4795))) (False) (Ref __iruid_4800)))))) (GetField GQ (Ref __iruid_4793))))))))))) (StreamFilter __iruid_4802 (StreamFlatMap __iruid_4803 (ToStream True (GetTupleElement 1 (Ref __iruid_4766))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_4803))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref __iruid_4802))) (I32 2)) (False)))) (InsertFields (Ref __iruid_4768) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_4804 (GetField __iruid_1520 (Ref __iruid_4767)) (ToArray (StreamMap __iruid_4805 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_4804)) (I32 1)) (Let __iruid_4827 (RunAgg ( (GroupedStateSig PInt32 ( (TypedStateSig +PInt64)))) (Begin (Begin (InitOp 0 (Grouped PInt32 ( (Count (TypedStateSig +PInt64)))) ((Begin (InitOp 0 (Count (TypedStateSig +PInt64)) ()))))) (StreamFor __iruid_4806 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_4804) (Ref __iruid_4805)))) (Let __iruid_4807 (ArrayRef -1 (ToArray (StreamMap __iruid_4808 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (GetField __iruid_2160 (Ref __iruid_4747)))) (I32 1)) (Let __iruid_4809 (ArrayRef -1 (ToArray (StreamMap __iruid_4810 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_4768))) (InsertFields (Ref __iruid_4810) None (GT (If (Let __iruid_4811 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_4810))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4811))) (Ref __iruid_4811))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_4810))) (GetField GT (Ref __iruid_4810))))))) (Ref __iruid_4808)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_4809)) (I32 20)) (False)) (Ref __iruid_4809) (NA Struct{GQ:Int32,GT:Call}))))) (Ref __iruid_4806)) (Begin (If (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_4807))) (Let __iruid_4813 (GetField GT (Ref __iruid_4807)) (Begin (If (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_4813)) (I32 2)) (Begin (SeqOp 0 (Grouped PInt32 ( (Count (TypedStateSig +PInt64)))) ((Apply 36 nNonRefAlleles () Int32 (Ref __iruid_4813)) (Begin (SeqOp 0 (Count (TypedStateSig +PInt64)) ()))))) (Begin)))) (Begin)))))) (MakeTuple (0) (ResultOp 0 (Grouped PInt32 ( (Count (TypedStateSig +PInt64))))))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_4812 (Let __iruid_4814 (ToArray (StreamMap __iruid_4815 (Let __iruid_4816 (ToDict (StreamMap __iruid_4828 (ToStream False (GetTupleElement 0 (Ref __iruid_4827))) (MakeTuple (0 1) (GetField key (Ref __iruid_4828)) (GetTupleElement 0 (GetField value (Ref __iruid_4828)))))) (StreamMap __iruid_4817 (ToStream False (Ref __iruid_4816)) (MakeTuple (0 1) (GetField key (Ref __iruid_4817)) (GetField value (Ref __iruid_4817))))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_4815)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_4815)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_4815))) (Die Int32 39 (Str "hardy_wein...")))))) (ToDict (ToStream False (Ref __iruid_4814)))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (If (IsNA (Ref __iruid_4812)) (NA Int32) (Let __iruid_4818 (LowerBoundOnOrderedCollection True (Ref __iruid_4812) (I32 0)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4818) (ArrayLen (CastToArray (Ref __iruid_4812)))) (I32 0) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4818))) (I32 0)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4818))) (I32 0))))) (If (IsNA (Ref __iruid_4812)) (NA Int32) (Let __iruid_4819 (LowerBoundOnOrderedCollection True (Ref __iruid_4812) (I32 1)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4819) (ArrayLen (CastToArray (Ref __iruid_4812)))) (I32 0) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4819))) (I32 1)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4819))) (I32 0))))) (If (IsNA (Ref __iruid_4812)) (NA Int32) (Let __iruid_4820 (LowerBoundOnOrderedCollection True (Ref __iruid_4812) (I32 2)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_4820) (ArrayLen (CastToArray (Ref __iruid_4812)))) (I32 0) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4820))) (I32 2)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_4812)) (Ref __iruid_4820))) (I32 0))))) (False)))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_4746)) (UUID4 __iruid_2413))) (NA String)) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (Literal Struct{} )) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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esidual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_ti_tv_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_insertion_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_insertion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_het_hom_var_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transition_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transversion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64}},n_pcs:+EInt32,used_regressed_metrics:+EBoolean},gnomad_age_distribution:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[+EInt32],n_smaller:+EInt32,n_larger:+EInt32},variant_annotation_descriptions:+EBaseStruct{locus:+EBaseStruct{Description:+EBinary},alleles:+EBaseStruct{Description:+EBinary},rsid:+EBaseStruct{Description:+EBinary},a_index:+EBaseStruct{Description:+EBinary},was_split:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_popmax:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},faf95:+EBaseStruct{Description:+EBinary}}},gnomad_faf:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{faf95:+EBaseStruct{Description:+EBinary},faf99:+EBaseStruct{Description:+EBinary}}},gnomad_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_raw_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_age_hist_het:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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(MakeStream Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_4740))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (Literal Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] )) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_4743)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_4743)))) (Let __iruid_4821 (ToArray (StreamMap __iruid_4822 (ToStream False (Ref __iruid_4745)) (GetField filePath (Ref __iruid_4822)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_4821)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_4821)))) (Let __iruid_4823 (ToArray (StreamMap __iruid_4824 (ToStream False (Ref __iruid_4745)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_4824)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_4823)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_4825 (ToStream False (Ref __iruid_4823)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_4825)) None (firstKey (Literal Struct{} )) (lastKey (Literal Struct{} )))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_4743))) (rows (ToArray (StreamMap __iruid_4826 (ToStream False (Ref __iruid_4823)) (GetField partitionCounts (Ref __iruid_4826))))))))))))))))))))))) 2023-08-16 15:03:56.538 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 830: (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"overwrite\":true,\"maybeRefs\":{\"references\":[{\"name\":\"GRCh38\",\"contigs\":[\"chr1\",\"chr2\",\"chr3\",\"chr4\",\"chr5\",\"chr6\",\"chr7\",\"chr8\",\"chr9\",\"chr10\",\"chr11\",\"chr12\",\"chr13\",\"chr14\",\"chr15\",\"chr16\",\"chr17\",\"chr18\",\"chr19\",\"chr20\",\"chr21\",\"chr22\",\"chrX\",\"chrY\",\"chrM\",\"chr1_KI270706v1_random\",\"chr1_KI270707v1_random\",\"chr1_KI270708v1_random\",\"chr1_KI270709v1_random\",\"chr1_KI270710v1_random\",\"chr1_KI270711v1_random\",\"chr1_KI270712v1_random\",\"chr1_KI270713v1_random\",\"chr1_KI270714v1_random\",\"chr2_KI270715v1_random\",\"chr2_KI270716v1_random\",\"chr3_GL000221v1_random\",\"chr4_GL000008v2_random\",\"chr5_GL000208v1_random\",\"chr9_KI270717v1_random\",\"chr9_KI270718v1_random\",\"chr9_KI270719v1_random\",\"chr9_KI270720v1_random\",\"chr11_KI270721v1_random\",\"chr14_GL000009v2_random\",\"ch..." (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"overwrite\":false}" (WriteMetadata "{\"name\":\"RelationalWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"overwrite\":false}" (Let __iruid_5025 (InsertFields (ArrayRef -1 (ToArray (ReadPartition Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description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EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gnomad_age_hist_hom:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},filters:+EBaseStruct{Description:+EBinary},info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{QUALapprox:+EBaseStruct{Description:+EBinary},SB:+EBaseStruct{Description:+EBinary},MQ:+EBaseStruct{Description:+EBinary},MQRankSum:+EBaseStruct{Description:+EBinary},VarDP:+EBaseStruct{Description:+EBinary},AS_ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_pab_max:+EBaseStruct{Description:+EBinary},AS_QD:+EBaseStruct{Description:+EBinary},AS_MQ:+EBaseStruct{Description:+EBinary},QD:+EBaseStruct{Description:+EBinary},AS_MQRankSum:+EBaseStruct{Description:+EBinary},FS:+EBaseStruct{Description:+EBinary},AS_FS:+EBaseStruct{Description:+EBinary},ReadPosRankSum:+EBaseStruct{Description:+EBinary},AS_QUALapprox:+EBaseStruct{Description:+EBinary},AS_SB_TABLE:+EBaseStruct{Description:+EBinary},AS_VarDP:+EBaseStruct{Description:+EBinary},AS_SOR:+EBaseStruct{Description:+EBinary},SOR:+EBaseStruct{Description:+EBinary},transmitted_singleton:+EBaseStruct{Description:+EBinary},omni:+EBaseStruct{Description:+EBinary},mills:+EBaseStruct{Description:+EBinary},monoallelic:+EBaseStruct{Description:+EBinary},InbreedingCoeff:+EBaseStruct{Description:+EBinary}}},vep:+EBaseStruct{Description:+EBinary},vqsr:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AS_VQSLOD:+EBaseStruct{Description:+EBinary},AS_culprit:+EBaseStruct{Description:+EBinary},NEGATIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary},POSITIVE_TRAIN_SITE:+EBaseStruct{Description:+EBinary}}},region_flag:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{lcr:+EBaseStruct{Description:+EBinary},segdup:+EBaseStruct{Description:+EBinary}}},allele_info:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{variant_type:+EBaseStruct{Description:+EBinary},allele_type:+EBaseStruct{Description:+EBinary},n_alt_alleles:+EBaseStruct{Description:+EBinary}}},was_mixed:+EBaseStruct{Description:+EBinary},cadd:+EBaseStruct{sub_annotations:+EBaseStruct{raw_score:+EBaseStruct{Description:+EBinary},phred:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},revel:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{revel_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},splice_ai:+EBaseStruct{sub_annotations:+EBaseStruct{splice_ai:+EBaseStruct{Description:+EBinary},splice_consequence:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},primate_ai:+EBaseStruct{sub_annotations:+EBaseStruct{primate_ai_score:+EBaseStruct{Description:+EBinary},has_duplicate:+EBaseStruct{Description:+EBinary}}},AS_lowqual:+EBaseStruct{Description:+EBinary},telomere_or_centromere:+EBaseStruct{Description:+EBinary}},hgdp_tgp_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],hgdp_tgp_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_freq_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],gnomad_freq_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_index_dict:+EArray[+EBaseStruct{key:+EBinary,value:+EInt32}],gnomad_faf_meta:+EArray[+EArray[+EBaseStruct{key:+EBinary,value:+EBinary}]],vep_version:+EBinary,vep_csq_header:+EBinary,dbsnp_version:+EBinary,variant_filtering_model:+EBaseStruct{model_name:+EBinary,score_name:+EBinary,snv_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},indel_cutoff:+EBaseStruct{bin:+EFloat64,min_score:+EFloat64},snv_training_variables:+EArray[+EBinary],indel_training_variables:+EArray[+EBinary]},variant_inbreeding_coeff_cutoff:+EFloat64}\",\"_vType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__row_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))) (I32 0)) None (__cols (ToArray (ReadPartition Struct{s:String} "{\"name\":\"PartitionNativeReader\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{s:+EBinary,bam_metrics:EBaseStruct{pct_bases_20x:EFloat64,pct_chimeras:EFloat64,freemix:EFloat64,mean_coverage:EFloat64,median_coverage:EFloat64,mean_insert_size:EFloat64,median_insert_size:EFloat64,pct_bases_10x:EFloat64},sample_qc:EBaseStruct{n_deletion:EInt64,n_het:+EInt64,n_hom_ref:+EInt64,n_hom_var:+EInt64,n_insertion:EInt64,n_non_ref:+EInt64,n_snp:EInt64,n_transition:EInt64,n_transversion:EInt64,r_het_hom_var:EFloat64,r_insertion_deletion:EFloat64,r_ti_tv:EFloat64},gnomad_sex_imputation:EBaseStruct{chr20_mean_dp:EFloat32,chrX_mean_dp:EFloat32,chrY_mean_dp:EFloat32,chrX_ploidy:EFloat32,chrY_ploidy:EFloat32,X_karyotype:EBinary,Y_karyotype:EBinary,sex_karyotype:EBinary,f_stat:EFloat64,n_called:EInt64,expected_homs:EFloat64,observed_homs:EInt64},gnomad_population_inference:EBaseStruct{pca_scores:EArray[EFloat64],pop:EBinary,prob_afr:EFloat64,prob_ami:EFloat64,prob_amr:EFloat64,prob_asj:EFloat64,prob_eas:EFloat64,prob_fin:EFloat64,prob_mid:EFloat64,prob_nfe:EFloat64,prob_oth:EFloat64,prob_sas:EFloat64},gnomad_sample_qc_residuals:EBaseStruct{n_snp_residual:EFloat64,r_ti_tv_residual:EFloat64,r_insertion_deletion_residual:EFloat64,n_insertion_residual:EFloat64,n_deletion_residual:EFloat64,r_het_hom_var_residual:EFloat64,n_transition_residual:EFloat64,n_transversion_residual:EFloat64},gnomad_sample_filters:EBaseStruct{hard_filters:EArray[+EBinary],hard_filtered:EBoolean,release_related:EBoolean,qc_metrics_filters:EArray[EBinary]},gnomad_high_quality:EBoolean,gnomad_release:EBoolean,relatedness_inference:EBaseStruct{related_samples:+EArray[+EBaseStruct{s:EBinary,kin:EFloat64,ibd0:EFloat64,ibd1:EFloat64,ibd2:EFloat64}],related:+EBoolean},hgdp_tgp_meta:EBaseStruct{project:EBinary,study_region:EBinary,population:EBinary,genetic_region:EBinary,latitude:EFloat64,longitude:EFloat64,hgdp_technical_meta:EBaseStruct{source:EBinary,library_type:EBinary},global_pca_scores:EArray[EFloat64],subcontinental_pca:+EBaseStruct{pca_scores:EArray[EFloat64],pca_scores_outliers_removed:EArray[EFloat64],outlier:EBoolean},gnomad_labeled_subpop:EBinary},high_quality:EBoolean}\",\"_vType\":\"Struct{s:String,bam_metrics:Struct{pct_bases_20x:Float64,pct_chimeras:Float64,freemix:Float64,mean_coverage:Float64,median_coverage:Float64,mean_insert_size:Float64,median_insert_size:Float64,pct_bases_10x:Float64},sample_qc:Struct{n_deletion:Int64,n_het:Int64,n_hom_ref:Int64,n_hom_var:Int64,n_insertion:Int64,n_non_ref:Int64,n_snp:Int64,n_transition:Int64,n_transversion:Int64,r_het_hom_var:Float64,r_insertion_deletion:Float64,r_ti_tv:Float64},gnomad_sex_imputation:Struct{chr20_mean_dp:Float32,chrX_mean_dp:Float32,chrY_mean_dp:Float32,chrX_ploidy:Float32,chrY_ploidy:Float32,X_karyotype:String,Y_karyotype:String,sex_karyotype:String,f_stat:Float64,n_called:Int64,expected_homs:Float64,observed_homs:Int64},gnomad_population_inference:Struct{pca_scores:Array[Float64],pop:String,prob_afr:Float64,prob_ami:Float64,prob_amr:Float64,prob_asj:Float64,prob_eas:Float64,prob_fin:Float64,prob_mid:Float64,prob_nfe:Float64,prob_oth:Float64,prob_sas:Float64},gnomad_sample_qc_residuals:Struct{n_snp_residual:Float64,r_ti_tv_residual:Float64,r_insertion_deletion_residual:Float64,n_insertion_residual:Float64,n_deletion_residual:Float64,r_het_hom_var_residual:Float64,n_transition_residual:Float64,n_transversion_residual:Float64},gnomad_sample_filters:Struct{hard_filters:Set[String],hard_filtered:Boolean,release_related:Boolean,qc_metrics_filters:Set[String]},gnomad_high_quality:Boolean,gnomad_release:Boolean,relatedness_inference:Struct{related_samples:Set[Struct{s:String,kin:Float64,ibd0:Float64,ibd1:Float64,ibd2:Float64}],related:Boolean},hgdp_tgp_meta:Struct{project:String,study_region:String,population:String,genetic_region:String,latitude:Float64,longitude:Float64,hgdp_technical_meta:Struct{source:String,library_type:String},global_pca_scores:Array[Float64],subcontinental_pca:Struct{pca_scores:Array[Float64],pca_scores_outliers_removed:Array[Float64],outlier:Boolean},gnomad_labeled_subpop:String},high_quality:Boolean}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"uidFieldName\":\"__col_uid\"}" (Literal Struct{partitionIndex:Int64,partitionPath:String} ))))) (Let __iruid_5026 (ToDict (StreamMap __iruid_5027 (ToStream False (Literal Array[Struct{s:String,ancestry:String}] )) (MakeTuple (0 1) (SelectFields (s) (Ref __iruid_5027)) (SelectFields (ancestry) (Ref __iruid_5027))))) (Let __iruid_5028 (ToArray (StreamMap __iruid_5029 (ToStream False (GetField __cols (Ref __iruid_5025))) (InsertFields (Ref __iruid_5029) None (__uid_40 (Let __iruid_5030 (MakeStruct (s (GetField s (Ref __iruid_5029)))) (If (IsNA (Ref __iruid_5026)) (NA Struct{ancestry:String}) (Let __iruid_5031 (LowerBoundOnOrderedCollection True (Ref __iruid_5026) (Ref __iruid_5030)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_5031) (ArrayLen (CastToArray (Ref __iruid_5026)))) (NA Struct{ancestry:String}) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_5026)) (Ref __iruid_5031))) (Ref __iruid_5030)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_5026)) (Ref __iruid_5031))) (NA Struct{ancestry:String})))))))))) (Let __iruid_5032 (ToArray (StreamMap __iruid_5033 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_5028)) (I32 1)) (Let __iruid_5034 (ArrayRef -1 (Ref __iruid_5028) (Ref __iruid_5033)) (InsertFields (SelectFields () (Ref __iruid_5034)) None (ancestry (GetField ancestry (GetField __uid_40 (Ref __iruid_5034)))))))) (Let __iruid_5035 (InsertFields (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_5025)) ("global_annotation_descriptions" "sample_annotation_descriptions" "gnomad_sex_imputation_ploidy_cutoffs" "gnomad_population_inference_pca_metrics" "sample_hard_filter_cutoffs" "gnomad_sample_qc_metric_outlier_cutoffs" "gnomad_age_distribution" "variant_annotation_descriptions" "hgdp_tgp_freq_meta" "hgdp_tgp_freq_index_dict" "gnomad_freq_meta" "gnomad_freq_index_dict" "gnomad_faf_index_dict" "gnomad_faf_meta" "vep_version" "vep_csq_header" "dbsnp_version" "variant_filtering_model" "variant_inbreeding_coeff_cutoff" "__iruid_1520") (__iruid_1520 (CastToArray (GroupByKey (StreamMap __iruid_5036 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_5032)) (I32 1)) (MakeStruct (key (ArrayRef -1 (Ref __iruid_5032) (Ref __iruid_5036))) (value (Ref __iruid_5036)))))))) (Let __iruid_5037 (GetField __iruid_1520 (Ref __iruid_5035)) (Let __iruid_5038 (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows/parts/\",\"trackTotalBytes\":false}" (StreamMap __iruid_5039 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_5037)) (I32 1)) (GetField key (ArrayRef -1 (Ref __iruid_5037) (Ref __iruid_5039)))) (Str "part-0")) (Let __iruid_5040 (CollectDistributedArray matrix_native_writer __iruid_5041 __iruid_5042 (StreamZip -1 AssertSameLength (__iruid_5043 __iruid_5044) (StreamZip -1 AssumeSameLength (__iruid_5045 __iruid_5046) (StreamZip -1 AssumeSameLength (__iruid_5047 __iruid_5048) (StreamMap __iruid_5049 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_5050 (ToStream False (Ref __iruid_5049)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_5050))))) (Let __iruid_5051 (ToArray (StreamRange -1 False (I32 0) (I32 0) (I32 1))) (StreamMap __iruid_5052 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_5053 (ToStream False (Ref __iruid_5052)) (ArrayRef -1 (Ref __iruid_5051) (Ref __iruid_5053)))))) (MakeTuple (0 1) (Ref __iruid_5047) (Ref __iruid_5048))) (StreamMap __iruid_5054 (ToStream False (Literal Array[Array[Int32]] )) (ToArray (StreamMap __iruid_5055 (ToStream False (Ref __iruid_5054)) (ArrayRef -1 (Literal Array[Struct{partitionIndex:Int64,leftPartitionPath:String,rightPartitionPath:String,indexPath:String,interval:Interval[Tuple[Struct{locus:Locus(GRCh38),alleles:Array[String]},Int32]]}] ) (Ref __iruid_5055))))) (MakeTuple (0 1) (Ref __iruid_5045) (Ref __iruid_5046))) (ToStream False (Literal Array[String] )) (MakeStruct (oldCtx (Ref __iruid_5043)) (writeCtx (Ref __iruid_5044)))) (Let __iruid_5056 (MakeStruct (__iruid_2160 (Ref __iruid_5025)) (__iruid_2405 (Ref __iruid_5035))) (If (IsNA (Ref __iruid_5056)) (NA Struct{__iruid_2160:Struct{__cols:Array[Struct{}]},__iruid_2405:Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}}) (MakeStruct (__iruid_2160 (Let __iruid_5057 (GetField __iruid_2160 (Ref __iruid_5056)) (If (IsNA (Ref __iruid_5057)) (NA Struct{__cols:Array[Struct{}]}) (MakeStruct (__cols (ToArray (StreamMap __iruid_5058 (ToStream False (GetField __cols (Ref __iruid_5057))) (If (IsNA (Ref __iruid_5058)) (NA Struct{}) (Literal Struct{} ))))))))) (__iruid_2405 (Let __iruid_5059 (GetField __iruid_2405 (Ref __iruid_5056)) (If (IsNA (Ref __iruid_5059)) (NA Struct{__iruid_1520:Array[Struct{value:Array[Int32]}]}) (MakeStruct (__iruid_1520 (ToArray (StreamMap __iruid_5060 (ToStream False (GetField __iruid_1520 (Ref __iruid_5059))) (If (IsNA (Ref __iruid_5060)) (NA Struct{value:Array[Int32]}) (MakeStruct (value (GetField value (Ref __iruid_5060))))))))))))))) (WritePartition "{\"spec1\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix1\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows/parts/\",\"spec2\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"partPrefix2\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows/parts/\",\"keyFieldNames\":[\"locus\",\"alleles\"],\"index\":{\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/index/\":\"+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[PCString]}\"}}" (Let __iruid_5061 (GetField oldCtx (Ref __iruid_5041)) (Let __iruid_5062 (GetField __iruid_2405 (Ref __iruid_5042)) (StreamMap __iruid_5063 (StreamMultiMerge (locus alleles) (Let __iruid_5064 (GetTupleElement 0 (Ref __iruid_5061)) (StreamMap __iruid_5065 (StreamMultiMerge (locus alleles) (StreamFlatMap __iruid_5066 (StreamFilter __iruid_5067 (StreamFlatMap __iruid_5068 (ToStream True (GetTupleElement 0 (Ref __iruid_5064))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_5068))) (Coalesce (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_5067))) (I32 2)) (False))) (StreamMap __iruid_5069 (Let __iruid_5070 (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_5066)) (Let __iruid_5071 (GetField alleles (Ref __iruid_5066)) (Let __iruid_5072 (GetField locus (Ref __iruid_5066)) (Let __iruid_5073 (SelectFields (locus alleles a_index) (Ref __iruid_5066)) (StreamMap __iruid_5074 (ToStream True (ArraySort __iruid_5075 __iruid_5076 (StreamFlatMap __iruid_5077 (StreamFilter __iruid_5078 (StreamRange 2 False (I32 1) (ArrayLen (Ref __iruid_5071)) (I32 1)) (ApplyComparisonOp NEQ (ArrayRef 3 (Ref __iruid_5071) (If (ApplyComparisonOp LT (Ref __iruid_5078) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_5071)) (Ref __iruid_5078)) (Ref __iruid_5078))) (Str "*"))) (ToStream False (Let __iruid_5079 (Apply 9 min_rep () Struct{locus:Locus(GRCh38),alleles:Array[String]} (Ref __iruid_5072) (MakeArray Array[String] (ArrayRef 7 (Ref __iruid_5071) (I32 0)) (ArrayRef 8 (Ref __iruid_5071) (If (ApplyComparisonOp LT (Ref __iruid_5077) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_5071)) (Ref __iruid_5077)) (Ref __iruid_5077))))) (If (ApplyComparisonOp EQ (GetField locus (Ref __iruid_5079)) (Ref __iruid_5072)) (MakeArray Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}] (MakeStruct (alleles (GetField alleles (Ref __iruid_5079))) (locus (GetField locus (Ref __iruid_5079))) (a_index (Ref __iruid_5077)) (was_split (ApplyComparisonOp GT (ArrayLen (GetField alleles (Ref __iruid_5066))) (I32 2))))) (NA Array[Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32,was_split:Boolean}]))))) (If (IsNA (Ref __iruid_5075)) (False) (If (IsNA (Ref __iruid_5076)) (True) (ApplyComparisonOp LT (ApplyComparisonOp Compare (Ref __iruid_5075) (Ref __iruid_5076)) (I32 0)))))) (Let __iruid_5080 (InsertFields (Ref __iruid_5073) ("locus" "alleles" "a_index" "__uid_3" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_5070)) (__uid_3 (Ref __iruid_5074))) (If (IsNA (Ref __iruid_5080)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_5080))) (alleles (GetField alleles (Ref __iruid_5080))) (a_index (GetField a_index (Ref __iruid_5080))) (__uid_3 (Let __iruid_5081 (GetField __uid_3 (Ref __iruid_5080)) (If (IsNA (Ref __iruid_5081)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_5081))) (locus (GetField locus (Ref __iruid_5081))) (a_index (GetField a_index (Ref __iruid_5081))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_5080))))))))))) (Let __iruid_5082 (If (IsNA (Ref __iruid_5069)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_5069))) (alleles (GetField alleles (Ref __iruid_5069))) (a_index (GetField a_index (Ref __iruid_5069))) (__uid_3 (Let __iruid_5083 (GetField __uid_3 (Ref __iruid_5069)) (If (IsNA (Ref __iruid_5083)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_5083))) (locus (GetField locus (Ref __iruid_5083))) (a_index (GetField a_index (Ref __iruid_5083))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_5069))))) (Let __iruid_5084 (If (IsNA (Ref __iruid_5082)) (NA Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,__uid_3:Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32},`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]}) (MakeStruct (locus (GetField locus (Ref __iruid_5082))) (alleles (GetField alleles (Ref __iruid_5082))) (a_index (GetField a_index (Ref __iruid_5082))) (__uid_3 (Let __iruid_5085 (GetField __uid_3 (Ref __iruid_5082)) (If (IsNA (Ref __iruid_5085)) (NA Struct{alleles:Array[String],locus:Locus(GRCh38),a_index:Int32}) (MakeStruct (alleles (GetField alleles (Ref __iruid_5085))) (locus (GetField locus (Ref __iruid_5085))) (a_index (GetField a_index (Ref __iruid_5085))))))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_5082))))) (InsertFields (Let __iruid_5086 (GetField __uid_3 (Ref __iruid_5084)) (InsertFields (SelectFields (locus alleles a_index) (Ref __iruid_5084)) None (locus (GetField locus (Ref __iruid_5086))) (alleles (GetField alleles (Ref __iruid_5086))) (a_index (GetField a_index (Ref __iruid_5086))) (old_alleles (GetField alleles (Ref __iruid_5084))))) None (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_5084)))))))) (StreamFlatMap __iruid_5087 (ToStream True (GetTupleElement 1 (Ref __iruid_5064))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],a_index:Int32,old_alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call,PL:Array[Int32]}]} "\"\"" (Ref __iruid_5087)))) (MakeStruct (locus (GetField locus (Ref __iruid_5065))) (alleles (GetField alleles (Ref __iruid_5065))) (the entries! [877f12a8827e18f61222c6c8c5fb04a8] (ToArray (StreamMap __iruid_5088 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_5065))) (InsertFields (SelectFields (GQ GT) (Ref __iruid_5088)) None (GT (Apply 16 downcode () Call (GetField GT (Ref __iruid_5088)) (GetField a_index (Ref __iruid_5065)))) (GQ (Coalesce (Apply 28 gqFromPL () Int32 (If (IsNA (GetField PL (Ref __iruid_5088))) (NA Array[Int32]) (ToArray (StreamMap __iruid_5089 (StreamRange 20 False (I32 0) (I32 3) (I32 1)) (StreamFold2 (__iruid_5095 __iruid_5096) __iruid_5090 (StreamFilter __iruid_5091 (StreamMap __iruid_5092 (StreamFilter __iruid_5093 (StreamRange 22 False (I32 0) (Apply 21 triangle () Int32 (ArrayLen (GetField old_alleles (Ref __iruid_5065)))) (I32 1)) (ApplyComparisonOp EQ (Apply 25 unphasedDiploidGtIndex () Int32 (Apply 24 downcode () Call (Apply 23 UnphasedDiploidGtIndexCall () Call (Ref __iruid_5093)) (GetField a_index (Ref __iruid_5065)))) (Ref __iruid_5089))) (Let __iruid_5094 (GetField PL (Ref __iruid_5088)) (ArrayRef 26 (Ref __iruid_5094) (If (ApplyComparisonOp LT (Ref __iruid_5092) (I32 0)) (ApplyBinaryPrimOp Add (ArrayLen (Ref __iruid_5094)) (Ref __iruid_5092)) (Ref __iruid_5092))))) (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_5091)))) (NA Int32) (True) (If (Ref __iruid_5096) (Ref __iruid_5090) (If (ApplyComparisonOp LT (Ref __iruid_5095) (Ref __iruid_5090)) (Ref __iruid_5095) (Ref __iruid_5090))) (False) (Ref __iruid_5095)))))) (GetField GQ (Ref __iruid_5088))))))))))) (StreamFilter __iruid_5097 (StreamFlatMap __iruid_5098 (ToStream True (GetTupleElement 1 (Ref __iruid_5061))) (ReadPartition Struct{locus:Locus(GRCh38),alleles:Array[String],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{GQ:Int32,GT:Call}]} "{\"name\":\"PartitionZippedIndexedNativeReader\",\"specLeft\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary],rsid:EArray[EBinary],a_index:EInt32,was_split:EBoolean,filters:EArray[+EBinary],info:EBaseStruct{SB:EArray[EInt32],MQRankSum:EFloat64,VarDP:+EInt32,AS_FS:EFloat64,AS_ReadPosRankSum:EFloat64,AS_pab_max:EFloat64,AS_QD:EFloat32,AS_MQ:EFloat64,AS_QUALapprox:EInt64,QD:+EFloat32,AS_MQRankSum:EFloat64,FS:EFloat64,MQ:+EFloat64,ReadPosRankSum:EFloat64,QUALapprox:+EInt64,AS_SB_TABLE:EArray[EInt32],AS_VarDP:EInt32,AS_SOR:EFloat64,SOR:EFloat64,transmitted_singleton:EBoolean,omni:EBoolean,mills:EBoolean,monoallelic:EBoolean,InbreedingCoeff:EFloat32,AS_VQSLOD:EFloat64},vep:EBaseStruct{assembly_name:EBinary,allele_string:EBinary,ancestral:EBinary,context:EBinary,end:EInt32,id:EBinary,input:EBinary,intergenic_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,variant_allele:EBinary}],most_severe_consequence:EBinary,motif_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,consequence_terms:EArray[EBinary],high_inf_pos:EBinary,impact:EBinary,minimised:EInt32,motif_feature_id:EBinary,motif_name:EBinary,motif_pos:EInt32,motif_score_change:EFloat64,strand:EInt32,variant_allele:EBinary}],regulatory_feature_consequences:EArray[EBaseStruct{allele_num:EInt32,biotype:EBinary,consequence_terms:EArray[EBinary],impact:EBinary,minimised:EInt32,regulatory_feature_id:EBinary,variant_allele:EBinary}],seq_region_name:EBinary,start:EInt32,strand:EInt32,transcript_consequences:EArray[EBaseStruct{allele_num:EInt32,amino_acids:EBinary,appris:EBinary,biotype:EBinary,canonical:EInt32,ccds:EBinary,cdna_start:EInt32,cdna_end:EInt32,cds_end:EInt32,cds_start:EInt32,codons:EBinary,consequence_terms:EArray[EBinary],distance:EInt32,domains:EArray[EBaseStruct{db:EBinary,name:EBinary}],exon:EBinary,gene_id:EBinary,gene_pheno:EInt32,gene_symbol:EBinary,gene_symbol_source:EBinary,hgnc_id:EBinary,hgvsc:EBinary,hgvsp:EBinary,hgvs_offset:EInt32,impact:EBinary,intron:EBinary,lof:EBinary,lof_flags:EBinary,lof_filter:EBinary,lof_info:EBinary,minimised:EInt32,polyphen_prediction:EBinary,polyphen_score:EFloat64,protein_end:EInt32,protein_start:EInt32,protein_id:EBinary,sift_prediction:EBinary,sift_score:EFloat64,strand:EInt32,swissprot:EBinary,transcript_id:EBinary,trembl:EBinary,tsl:EInt32,uniparc:EBinary,variant_allele:EBinary}],variant_class:EBinary},vqsr:EBaseStruct{AS_VQSLOD:EFloat64,AS_culprit:EBinary,NEGATIVE_TRAIN_SITE:EBoolean,POSITIVE_TRAIN_SITE:EBoolean},region_flag:EBaseStruct{lcr:+EBoolean,segdup:+EBoolean},allele_info:EBaseStruct{variant_type:EBinary,allele_type:EBinary,n_alt_alleles:EInt32,was_mixed:EBoolean},hgdp_tgp_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_freq:EArray[EBaseStruct{AC:EInt32,AF:EFloat64,AN:EInt32,homozygote_count:EInt32}],gnomad_popmax:EBaseStruct{AC:EInt32,AF:EFloat64,AN:+EInt32,homozygote_count:EInt32,pop:EBinary,faf95:EFloat64},gnomad_faf:EArray[EBaseStruct{faf95:EFloat64,faf99:EFloat64}],gnomad_raw_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_qual_hists:EBaseStruct{gq_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_all:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gq_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},dp_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},ab_hist_alt:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64}},gnomad_age_hist_het:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},gnomad_age_hist_hom:EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[EInt64],n_smaller:EInt64,n_larger:EInt64},cadd:EBaseStruct{phred:EFloat32,raw_score:EFloat32,has_duplicate:+EBoolean},revel:EBaseStruct{revel_score:EFloat64,has_duplicate:+EBoolean},splice_ai:EBaseStruct{splice_ai_score:EFloat32,splice_consequence:EBinary,has_duplicate:+EBoolean},primate_ai:EBaseStruct{primate_ai_score:EFloat32,has_duplicate:+EBoolean}}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String],rsid:Set[String],a_index:Int32,was_split:Boolean,filters:Set[String],info:Struct{SB:Array[Int32],MQRankSum:Float64,VarDP:Int32,AS_FS:Float64,AS_ReadPosRankSum:Float64,AS_pab_max:Float64,AS_QD:Float32,AS_MQ:Float64,AS_QUALapprox:Int64,QD:Float32,AS_MQRankSum:Float64,FS:Float64,MQ:Float64,ReadPosRankSum:Float64,QUALapprox:Int64,AS_SB_TABLE:Array[Int32],AS_VarDP:Int32,AS_SOR:Float64,SOR:Float64,transmitted_singleton:Boolean,omni:Boolean,mills:Boolean,monoallelic:Boolean,InbreedingCoeff:Float32,AS_VQSLOD:Float64},vep:Struct{assembly_name:String,allele_string:String,ancestral:String,context:String,end:Int32,id:String,input:String,intergenic_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],impact:String,minimised:Int32,variant_allele:String}],most_severe_consequence:String,motif_feature_consequences:Array[Struct{allele_num:Int32,consequence_terms:Array[String],high_inf_pos:String,impact:String,minimised:Int32,motif_feature_id:String,motif_name:String,motif_pos:Int32,motif_score_change:Float64,strand:Int32,variant_allele:String}],regulatory_feature_consequences:Array[Struct{allele_num:Int32,biotype:String,consequence_terms:Array[String],impact:String,minimised:Int32,regulatory_feature_id:String,variant_allele:String}],seq_region_name:String,start:Int32,strand:Int32,transcript_consequences:Array[Struct{allele_num:Int32,amino_acids:String,appris:String,biotype:String,canonical:Int32,ccds:String,cdna_start:Int32,cdna_end:Int32,cds_end:Int32,cds_start:Int32,codons:String,consequence_terms:Array[String],distance:Int32,domains:Array[Struct{db:String,name:String}],exon:String,gene_id:String,gene_pheno:Int32,gene_symbol:String,gene_symbol_source:String,hgnc_id:String,hgvsc:String,hgvsp:String,hgvs_offset:Int32,impact:String,intron:String,lof:String,lof_flags:String,lof_filter:String,lof_info:String,minimised:Int32,polyphen_prediction:String,polyphen_score:Float64,protein_end:Int32,protein_start:Int32,protein_id:String,sift_prediction:String,sift_score:Float64,strand:Int32,swissprot:String,transcript_id:String,trembl:String,tsl:Int32,uniparc:String,variant_allele:String}],variant_class:String},vqsr:Struct{AS_VQSLOD:Float64,AS_culprit:String,NEGATIVE_TRAIN_SITE:Boolean,POSITIVE_TRAIN_SITE:Boolean},region_flag:Struct{lcr:Boolean,segdup:Boolean},allele_info:Struct{variant_type:String,allele_type:String,n_alt_alleles:Int32,was_mixed:Boolean},hgdp_tgp_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_freq:Array[Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32}],gnomad_popmax:Struct{AC:Int32,AF:Float64,AN:Int32,homozygote_count:Int32,pop:String,faf95:Float64},gnomad_faf:Array[Struct{faf95:Float64,faf99:Float64}],gnomad_raw_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_qual_hists:Struct{gq_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_all:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gq_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},dp_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},ab_hist_alt:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64}},gnomad_age_hist_het:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},gnomad_age_hist_hom:Struct{bin_edges:Array[Float64],bin_freq:Array[Int64],n_smaller:Int64,n_larger:Int64},cadd:Struct{phred:Float32,raw_score:Float32,has_duplicate:Boolean},revel:Struct{revel_score:Float64,has_duplicate:Boolean},splice_ai:Struct{splice_ai_score:Float32,splice_consequence:String,has_duplicate:Boolean},primate_ai:Struct{primate_ai_score:Float32,has_duplicate:Boolean}}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"specRight\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[EBaseStruct{DP:EInt32,GQ:EInt32,MIN_DP:EInt32,PID:EBinary,RGQ:EInt32,SB:EArray[EInt32],GT:EInt32,PGT:EInt32,AD:EArray[EInt32],PL:EArray[EInt32],adj:EBoolean}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{DP:Int32,GQ:Int32,MIN_DP:Int32,PID:String,RGQ:Int32,SB:Array[Int32],GT:Call,PGT:Call,AD:Array[Int32],PL:Array[Int32],adj:Boolean}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4FastBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"indexSpecLeft\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\"},\"indexSpecRight\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},offset:+EInt64,annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{first_idx:Int64,keys:Array[Struct{key:Struct{locus:Locus(GRCh38),alleles:Array[String]},offset:Int64,annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_internalNodeCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{children:+EArray[+EBaseStruct{index_file_offset:+EInt64,first_idx:+EInt64,first_key:+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]},first_record_offset:+EInt64,first_annotation:+EBaseStruct{entries_offset:EInt64}}]}\",\"_vType\":\"Struct{children:Array[Struct{index_file_offset:Int64,first_idx:Int64,first_key:Struct{locus:Locus(GRCh38),alleles:Array[String]},first_record_offset:Int64,first_annotation:Struct{entries_offset:Int64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"_keyType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_annotationType\":\"Struct{entries_offset:Int64}\",\"_offsetField\":\"entries_offset\"},\"key\":[\"locus\",\"alleles\"],\"uidFieldName\":\"__row_uid\"}" (Ref __iruid_5098))) (Coalesce (ApplyComparisonOp EQ (ArrayLen (GetField alleles (Ref __iruid_5097))) (I32 2)) (False)))) (InsertFields (Ref __iruid_5063) ("locus" "alleles" "the entries! [877f12a8827e18f61222c6c8c5fb04a8]") (`the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Let __iruid_5099 (GetField __iruid_1520 (Ref __iruid_5062)) (ToArray (StreamMap __iruid_5100 (StreamRange -1 False (I32 0) (ArrayLen (Ref __iruid_5099)) (I32 1)) (Let __iruid_5101 (RunAgg ( (GroupedStateSig PInt32 ( (TypedStateSig +PInt64)))) (Begin (Begin (InitOp 0 (Grouped PInt32 ( (Count (TypedStateSig +PInt64)))) ((Begin (InitOp 0 (Count (TypedStateSig +PInt64)) ()))))) (StreamFor __iruid_5102 (ToStream False (GetField value (ArrayRef -1 (Ref __iruid_5099) (Ref __iruid_5100)))) (Let __iruid_5103 (ArrayRef -1 (ToArray (StreamMap __iruid_5104 (StreamRange -1 False (I32 0) (ArrayLen (GetField __cols (GetField __iruid_2160 (Ref __iruid_5042)))) (I32 1)) (Let __iruid_5105 (ArrayRef -1 (ToArray (StreamMap __iruid_5106 (ToStream False (GetField `the entries! [877f12a8827e18f61222c6c8c5fb04a8]` (Ref __iruid_5063))) (InsertFields (Ref __iruid_5106) None (GT (If (Let __iruid_5107 (Apply 32 isPhased () Boolean (GetField GT (Ref __iruid_5106))) (ApplySpecial 34 land () Boolean (ApplyUnaryPrimOp Bang (IsNA (Ref __iruid_5107))) (Ref __iruid_5107))) (Apply 33 unphase () Call (GetField GT (Ref __iruid_5106))) (GetField GT (Ref __iruid_5106))))))) (Ref __iruid_5104)) (If (Coalesce (ApplyComparisonOp GTEQ (GetField GQ (Ref __iruid_5105)) (I32 20)) (False)) (Ref __iruid_5105) (NA Struct{GQ:Int32,GT:Call}))))) (Ref __iruid_5102)) (Begin (If (IsNA (Ref __iruid_5103)) (Begin) (Let __iruid_5108 (GetField GT (Ref __iruid_5103)) (Begin (If (ApplyComparisonOp EQ (Apply 35 ploidy () Int32 (Ref __iruid_5108)) (I32 2)) (Begin (SeqOp 0 (Grouped PInt32 ( (Count (TypedStateSig +PInt64)))) ((Apply 36 nNonRefAlleles () Int32 (Ref __iruid_5108)) (Begin (SeqOp 0 (Count (TypedStateSig +PInt64)) ()))))) (Begin))))))))) (MakeTuple (0) (ResultOp 0 (Grouped PInt32 ( (Count (TypedStateSig +PInt64))))))) (InsertFields (Literal Struct{} ) None (hwe (Let __iruid_5109 (ToDict (StreamMap __iruid_5110 (ToStream False (ToDict (StreamMap __iruid_5111 (ToStream False (GetTupleElement 0 (Ref __iruid_5101))) (MakeTuple (0 1) (GetField key (Ref __iruid_5111)) (GetTupleElement 0 (GetField value (Ref __iruid_5111))))))) (Let __iruid_5112 (MakeTuple (0 1) (GetField key (Ref __iruid_5110)) (GetField value (Ref __iruid_5110))) (MakeTuple (0 1) (GetTupleElement 0 (Ref __iruid_5112)) (If (ApplyComparisonOp LT (GetTupleElement 1 (Ref __iruid_5112)) (I64 2147483648)) (Cast Int32 (GetTupleElement 1 (Ref __iruid_5112))) (Die Int32 39 (Str "hardy_wein..."))))))) (Apply 44 hardy_weinberg_test () Struct{het_freq_hwe:Float64,p_value:Float64} (If (IsNA (Ref __iruid_5109)) (NA Int32) (Let __iruid_5113 (LowerBoundOnOrderedCollection True (Ref __iruid_5109) (I32 0)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_5113) (ArrayLen (CastToArray (Ref __iruid_5109)))) (I32 0) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_5109)) (Ref __iruid_5113))) (I32 0)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_5109)) (Ref __iruid_5113))) (I32 0))))) (If (IsNA (Ref __iruid_5109)) (NA Int32) (Let __iruid_5114 (LowerBoundOnOrderedCollection True (Ref __iruid_5109) (I32 1)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_5114) (ArrayLen (CastToArray (Ref __iruid_5109)))) (I32 0) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_5109)) (Ref __iruid_5114))) (I32 1)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_5109)) (Ref __iruid_5114))) (I32 0))))) (If (IsNA (Ref __iruid_5109)) (NA Int32) (Let __iruid_5115 (LowerBoundOnOrderedCollection True (Ref __iruid_5109) (I32 2)) (If (ApplyComparisonOp EQWithNA (Ref __iruid_5115) (ArrayLen (CastToArray (Ref __iruid_5109)))) (I32 0) (If (ApplyComparisonOp EQWithNA (GetField key (ArrayRef -1 (CastToArray (Ref __iruid_5109)) (Ref __iruid_5115))) (I32 2)) (GetField value (ArrayRef -1 (CastToArray (Ref __iruid_5109)) (Ref __iruid_5115))) (I32 0))))) (False)))))))))))))) (Apply -1 concat () String (GetField writeCtx (Ref __iruid_5041)) (UUID4 __iruid_2413))) (NA String)) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{}\",\"_vType\":\"Struct{}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"keyFields\":[],\"partPrefix\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/globals/parts/\",\"trackTotalBytes\":false}" (MakeStream Stream[Struct{}] False (Literal Struct{} )) (Str "part-0"))))) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBina..." (MakeArray Array[String] (GetField filePath (WritePartition "{\"name\":\"PartitionNativeWriter\",\"spec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{global_annotation_descriptions:+EBaseStruct{gnomad_sex_imputation_ploidy_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_population_inference_pca_metrics:+EBaseStruct{Description:+EBinary},sample_hard_filter_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_sample_qc_metric_outlier_cutoffs:+EBaseStruct{Description:+EBinary},gnomad_age_distribution:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},hgdp_tgp_freq_meta:+EBaseStruct{Description:+EBinary},gnomad_freq_meta:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_freq_index_dict:+EBaseStruct{Description:+EBinary},gnomad_faf_meta:+EBaseStruct{Description:+EBinary},gnomad_faf_index_dict:+EBaseStruct{Description:+EBinary},variant_filtering_model:+EBaseStruct{Description:+EArray[+EBinary],sub_globals:+EBaseStruct{model_name:+EBaseStruct{Description:+EBinary},score_name:+EBaseStruct{Description:+EBinary},snv_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},indel_cutoff:+EBaseStruct{Description:+EBinary,sub_globals:+EBaseStruct{bin:+EBaseStruct{Description:+EBinary},min_score:+EBaseStruct{Description:+EBinary}}},snv_training_variables:+EBaseStruct{Description:+EBinary},indel_training_variables:+EBaseStruct{Description:+EBinary}}},variant_inbreeding_coeff_cutoff:+EBaseStruct{Description:+EBinary},vep_version:+EBaseStruct{Description:+EBinary},vep_csq_header:+EBaseStruct{Description:+EBinary},dbsnp_version:+EBaseStruct{Description:+EBinary}},sample_annotation_descriptions:+EBaseStruct{s:+EBaseStruct{Description:+EBinary},bam_metrics:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pct_bases_20x:+EBaseStruct{Description:+EBinary},pct_chimeras:+EBaseStruct{Description:+EBinary},freemix:+EBaseStruct{Description:+EBinary},mean_coverage:+EBaseStruct{Description:+EBinary},median_coverage:+EBaseStruct{Description:+EBinary},mean_insert_size:+EBaseStruct{Description:+EBinary},median_insert_size:+EBaseStruct{Description:+EBinary},pct_bases_10x:+EBaseStruct{Description:+EBinary}}},sample_qc:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{n_deletion:+EBaseStruct{Description:+EBinary},n_het:+EBaseStruct{Description:+EBinary},n_hom_ref:+EBaseStruct{Description:+EBinary},n_hom_var:+EBaseStruct{Description:+EBinary},n_insertion:+EBaseStruct{Description:+EBinary},n_non_ref:+EBaseStruct{Description:+EBinary},n_snp:+EBaseStruct{Description:+EBinary},n_transition:+EBaseStruct{Description:+EBinary},n_transversion:+EBaseStruct{Description:+EBinary},r_het_hom_var:+EBaseStruct{Description:+EBinary},r_insertion_deletion:+EBaseStruct{Description:+EBinary},r_ti_tv:+EBaseStruct{Description:+EBinary}}},gnomad_sex_imputation:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{chr20_mean_dp:+EBaseStruct{Description:+EBinary},chrX_mean_dp:+EBaseStruct{Description:+EBinary},chrY_mean_dp:+EBaseStruct{Description:+EBinary},chrX_ploidy:+EBaseStruct{Description:+EBinary},chrY_ploidy:+EBaseStruct{Description:+EBinary},X_karyotype:+EBaseStruct{Description:+EBinary},Y_karyotype:+EBaseStruct{Description:+EBinary},sex_karyotype:+EBaseStruct{Description:+EBinary},f_stat:+EBaseStruct{Description:+EBinary},n_called:+EBaseStruct{Description:+EBinary},expected_homs:+EBaseStruct{Description:+EBinary},observed_homs:+EBaseStruct{Description:+EBinary}}},gnomad_population_inference:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{pca_scores:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},prob_afr:+EBaseStruct{Description:+EBinary},prob_ami:+EBaseStruct{Description:+EBinary},prob_amr:+EBaseStruct{Description:+EBinary},prob_asj:+EBaseStruct{Description:+EBinary},prob_eas:+EBaseStruct{Description:+EBinary},prob_fin:+EBaseStruct{Description:+EBinary},prob_mid:+EBaseStruct{Description:+EBinary},prob_nfe:+EBaseStruct{Description:+EBinary},prob_oth:+EBaseStruct{Description:+EBinary},prob_sas:+EBaseStruct{Description:+EBinary}}},gnomad_sample_qc_residuals:+EBaseStruct{Description:+EBaseStruct{`0`:+EBinary},sub_annotations:+EBaseStruct{n_snp_residual:+EBaseStruct{Description:+EBinary},r_ti_tv_residual:+EBaseStruct{Description:+EBinary},r_insertion_deletion_residual:+EBaseStruct{Description:+EBinary},n_insertion_residual:+EBaseStruct{Description:+EBinary},n_deletion_residual:+EBaseStruct{Description:+EBinary},r_het_hom_var_residual:+EBaseStruct{Description:+EBinary},n_transition_residual:+EBaseStruct{Description:+EBinary},n_transversion_residual:+EBaseStruct{Description:+EBinary}}},gnomad_sample_filters:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{hard_filters:+EBaseStruct{Description:+EBi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esidual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_ti_tv_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_insertion_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_insertion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_deletion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},r_het_hom_var_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transition_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64},n_transversion_residual:+EBaseStruct{median:+EFloat64,mad:+EFloat64,lower:+EFloat64,upper:+EFloat64}},n_pcs:+EInt32,used_regressed_metrics:+EBoolean},gnomad_age_distribution:+EBaseStruct{bin_edges:+EArray[+EFloat64],bin_freq:+EArray[+EInt32],n_smaller:+EInt32,n_larger:+EInt32},variant_annotation_descriptions:+EBaseStruct{locus:+EBaseStruct{Description:+EBinary},alleles:+EBaseStruct{Description:+EBinary},rsid:+EBaseStruct{Description:+EBinary},a_index:+EBaseStruct{Description:+EBinary},was_split:+EBaseStruct{Description:+EBinary},hgdp_tgp_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_freq:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary}}},gnomad_popmax:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{AC:+EBaseStruct{Description:+EBinary},AF:+EBaseStruct{Description:+EBinary},AN:+EBaseStruct{Description:+EBinary},homozygote_count:+EBaseStruct{Description:+EBinary},pop:+EBaseStruct{Description:+EBinary},faf95:+EBaseStruct{Description:+EBinary}}},gnomad_faf:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{faf95:+EBaseStruct{Description:+EBinary},faf99:+EBaseStruct{Description:+EBinary}}},gnomad_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_raw_qual_hists:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{gq_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_all:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},gq_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},dp_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}},ab_hist_alt:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+EBaseStruct{Description:+EBinary},bin_freq:+EBaseStruct{Description:+EBinary},n_smaller:+EBaseStruct{Description:+EBinary},n_larger:+EBaseStruct{Description:+EBinary}}}}},gnomad_age_hist_het:+EBaseStruct{Description:+EBinary,sub_annotations:+EBaseStruct{bin_edges:+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_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_ann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(MakeStream Stream[Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{model_name:Struct{Description:String},score_name:Struct{Description:String},snv_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},indel_cutoff:Struct{Description:String,sub_globals:Struct{bin:Struct{Description:String},min_score:Struct{Description:String}}},snv_training_variables:Struct{Description:String},indel_training_variables:Struct{Description:String}}},variant_inbreeding_coeff_cutoff:Struct{Description:String},vep_version:Struct{Description:String},vep_csq_header:Struct{Description:String},dbsnp_version:Struct{Description:String}},sample_annotation_descriptions:Struct{s:Struct{Description:String},bam_metrics:Struct{Description:String,sub_annotations:Struct{pct_bases_20x:Struct{Description:String},pct_chimeras:Struct{Description:String},freemix:Struct{Description:String},mean_coverage:Struct{Description:String},median_coverage:Struct{Description:String},mean_insert_size:Struct{Description:String},median_insert_size:Struct{Description:String},pct_bases_10x:Struct{Description:String}}},sample_qc:Struct{Description:String,sub_annotations:Struct{n_deletion:Struct{Description:String},n_het:Struct{Description:String},n_hom_ref:Struct{Description:String},n_hom_var:Struct{Description:String},n_insertion:Struct{Description:String},n_non_ref:Struct{Description:String},n_snp:Struct{Description:String},n_transition:Struct{Description:String},n_transversion:Struct{Description:String},r_het_hom_var:Struct{Description:String},r_insertion_deletion:Struct{Description:String},r_ti_tv:Struct{Description:String}}},gnomad_sex_imputation:Struct{Description:String,sub_annotations:Struct{chr20_mean_dp:Struct{Description:String},chrX_mean_dp:Struct{Description:String},chrY_mean_dp:Struct{Description:String},chrX_ploidy:Struct{Description:String},chrY_ploidy:Struct{Description:String},X_karyotype:Struct{Description:String},Y_karyotype:Struct{Description:String},sex_karyotype:Struct{Description:String},f_stat:Struct{Description:String},n_called:Struct{Description:String},expected_homs:Struct{Description:String},observed_homs:Struct{Description:String}}},gnomad_population_inference:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pop:Struct{Description:String},prob_afr:Struct{Description:String},prob_ami:Struct{Description:String},prob_amr:Struct{Description:String},prob_asj:Struct{Description:String},prob_eas:Struct{Description:String},prob_fin:Struct{Description:String},prob_mid:Struct{Description:String},prob_nfe:Struct{Description:String},prob_oth:Struct{Description:String},prob_sas:Struct{Description:String}}},gnomad_sample_qc_residuals:Struct{Description:Tuple[String],sub_annotations:Struct{n_snp_residual:Struct{Description:String},r_ti_tv_residual:Struct{Description:String},r_insertion_deletion_residual:Struct{Description:String},n_insertion_residual:Struct{Description:String},n_deletion_residual:Struct{Description:String},r_het_hom_var_residual:Struct{Description:String},n_transition_residual:Struct{Description:String},n_transversion_residual:Struct{Description:String}}},gnomad_sample_filters:Struct{Description:String,sub_annotations:Struct{hard_filters:Struct{Description:String},hard_filtered:Struct{Description:String},release_related:Struct{Description:String},qc_metrics_filters:Struct{Description:String}}},gnomad_high_quality:Struct{Description:String},gnomad_release:Struct{Description:String},relatedness_inference:Struct{Description:String,sub_annotations:Struct{related_samples:Struct{Description:String,sub_annotations:Struct{s:Struct{Description:String},kin:Struct{Description:String},ibd0:Struct{Description:String},ibd1:Struct{Description:String},ibd2:Struct{Description:String}}},related:Struct{Description:String}}},hgdp_tgp_meta:Struct{Description:String,sub_annotations:Struct{project:Struct{Description:String},study_region:Struct{Description:String},population:Struct{Description:String},genetic_region:Struct{Description:String},latitude:Struct{Description:String},longitude:Struct{Description:String},hgdp_technical_meta:Struct{Description:String,sub_annotations:Struct{source:Struct{Description:String},library_type:Struct{Description:String}}},global_pca_scores:Struct{Description:String},subcontinental_pca:Struct{Description:String,sub_annotations:Struct{pca_scores:Struct{Description:String},pca_scores_outliers_removed:Struct{Description:String},outlier:Struct{Description:String}}},gnomad_labeled_subpop:Struct{Description:String}}},high_quality:Struct{Description:String}},gnomad_sex_imputation_ploidy_cutoffs:Struct{x_ploidy_cutoffs:Struct{upper_cutoff_X:Float64,lower_cutoff_XX:Float64,upper_cutoff_XX:Float64,lower_cutoff_XXX:Float64},y_ploidy_cutoffs:Struct{lower_cutoff_Y:Float64,upper_cutoff_Y:Float64,lower_cutoff_YY:Float64},f_stat_cutoff:Float64},gnomad_population_inference_pca_metrics:Struct{n_pcs:Int32,min_prob:Float64},sample_hard_filter_cutoffs:Struct{min_cov:Int32,max_n_snp:Float64,min_n_snp:Float64,max_n_singleton:Float64,max_r_het_hom_var:Float64,max_pct_contamination:Float64,max_pct_chimera:Float64,min_median_insert_size:Int32},gnomad_sample_qc_metric_outlier_cutoffs:Struct{lms:Struct{n_snp:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_singleton:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_ti_tv:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_insertion_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_insertion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_deletion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},r_het_hom_var:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transition:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32},n_transversion:Struct{beta:Array[Float64],standard_error:Array[Float64],t_stat:Array[Float64],p_value:Array[Float64],multiple_standard_error:Float64,multiple_r_squared:Float64,adjusted_r_squared:Float64,f_stat:Float64,multiple_p_value:Float64,n:Int32}},qc_metrics_stats:Struct{n_snp_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_singleton_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_ti_tv_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_insertion_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_insertion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_deletion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},r_het_hom_var_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transition_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64},n_transversion_residual:Struct{median:Float64,mad:Float64,lower:Float64,upper:Float64}},n_pcs:Int32,used_regressed_metrics:Boolean},gnomad_age_distribution:Struct{bin_edges:Array[Float64],bin_freq:Array[Int32],n_smaller:Int32,n_larger:Int32},variant_annotation_descriptions:Struct{locus:Struct{Description:String},alleles:Struct{Description:String},rsid:Struct{Description:String},a_index:Struct{Description:String},was_split:Struct{Description:String},hgdp_tgp_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_freq:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String}}},gnomad_popmax:Struct{Description:String,sub_annotations:Struct{AC:Struct{Description:String},AF:Struct{Description:String},AN:Struct{Description:String},homozygote_count:Struct{Description:String},pop:Struct{Description:String},faf95:Struct{Description:String}}},gnomad_faf:Struct{Description:String,sub_annotations:Struct{faf95:Struct{Description:String},faf99:Struct{Description:String}}},gnomad_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_raw_qual_hists:Struct{Description:String,sub_annotations:Struct{gq_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_all:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gq_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},dp_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},ab_hist_alt:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}}}},gnomad_age_hist_het:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},gnomad_age_hist_hom:Struct{Description:String,sub_annotations:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},filters:Struct{Description:String},info:Struct{Description:String,sub_annotations:Struct{QUALapprox:Struct{Description:String},SB:Struct{Description:String},MQ:Struct{Description:String},MQRankSum:Struct{Description:String},VarDP:Struct{Description:String},AS_ReadPosRankSum:Struct{Description:String},AS_pab_max:Struct{Description:String},AS_QD:Struct{Description:String},AS_MQ:Struct{Description:String},QD:Struct{Description:String},AS_MQRankSum:Struct{Description:String},FS:Struct{Description:String},AS_FS:Struct{Description:String},ReadPosRankSum:Struct{Description:String},AS_QUALapprox:Struct{Description:String},AS_SB_TABLE:Struct{Description:String},AS_VarDP:Struct{Description:String},AS_SOR:Struct{Description:String},SOR:Struct{Description:String},transmitted_singleton:Struct{Description:String},omni:Struct{Description:String},mills:Struct{Description:String},monoallelic:Struct{Description:String},InbreedingCoeff:Struct{Description:String}}},vep:Struct{Description:String},vqsr:Struct{Description:String,sub_annotations:Struct{AS_VQSLOD:Struct{Description:String},AS_culprit:Struct{Description:String},NEGATIVE_TRAIN_SITE:Struct{Description:String},POSITIVE_TRAIN_SITE:Struct{Description:String}}},region_flag:Struct{Description:String,sub_annotations:Struct{lcr:Struct{Description:String},segdup:Struct{Description:String}}},allele_info:Struct{Description:String,sub_annotations:Struct{variant_type:Struct{Description:String},allele_type:Struct{Description:String},n_alt_alleles:Struct{Description:String}}},was_mixed:Struct{Description:String},cadd:Struct{sub_annotations:Struct{raw_score:Struct{Description:String},phred:Struct{Description:String},has_duplicate:Struct{Description:String}}},revel:Struct{Description:String,sub_annotations:Struct{revel_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},splice_ai:Struct{sub_annotations:Struct{splice_ai:Struct{Description:String},splice_consequence:Struct{Description:String},has_duplicate:Struct{Description:String}}},primate_ai:Struct{sub_annotations:Struct{primate_ai_score:Struct{Description:String},has_duplicate:Struct{Description:String}}},AS_lowqual:Struct{Description:String},telomere_or_centromere:Struct{Description:String}},hgdp_tgp_freq_meta:Array[Dict[String,String]],hgdp_tgp_freq_index_dict:Dict[String,Int32],gnomad_freq_meta:Array[Dict[String,String]],gnomad_freq_index_dict:Dict[String,Int32],gnomad_faf_index_dict:Dict[String,Int32],gnomad_faf_meta:Array[Dict[String,String]],vep_version:String,vep_csq_header:String,dbsnp_version:String,variant_filtering_model:Struct{model_name:String,score_name:String,snv_cutoff:Struct{bin:Float64,min_score:Float64},indel_cutoff:Struct{bin:Float64,min_score:Float64},snv_training_variables:Array[String],indel_training_variables:Array[String]},variant_inbreeding_coeff_cutoff:Float64}] False (SelectFields (global_annotation_descriptions sample_annotation_descriptions gnomad_sex_imputation_ploidy_cutoffs gnomad_population_inference_pca_metrics sample_hard_filter_cutoffs gnomad_sample_qc_metric_outlier_cutoffs gnomad_age_distribution variant_annotation_descriptions hgdp_tgp_freq_meta hgdp_tgp_freq_index_dict gnomad_freq_meta gnomad_freq_index_dict gnomad_faf_index_dict gnomad_faf_meta vep_version vep_csq_header dbsnp_version variant_filtering_model variant_inbreeding_coeff_cutoff) (Ref __iruid_5035))) (Str "part-0"))))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/globals\",\"typ\":{\"rowType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Descripti..." (Literal Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] )) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{ancestry:EBinary}\",\"_vType\":\"Struct{ancestry:String}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":null,\"attrs\":{}}}" (MakeArray Array[String] (GetField filePath (Ref __iruid_5038)))) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/cols\",\"typ\":{\"rowType\":\"Struct{ancestry:String}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Descripti..." (MakeArray Array[Struct{partitionCounts:Int64,distinctlyKeyed:Boolean,firstKey:Struct{},lastKey:Struct{}}] (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_5038)))) (Let __iruid_5116 (ToArray (StreamMap __iruid_5117 (ToStream False (Ref __iruid_5040)) (GetField filePath (Ref __iruid_5117)))) (Begin (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{locus:EBaseStruct{contig:+EBinary,position:+EInt32},alleles:EArray[EBinary]}\",\"_vType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[\"locus\",\"alleles\"],\"bounds\":[{\"start\":{\"locus\":{\"contig\":\"chr1\",\"position\":97551332}},\"end\":{\"locus\":{\"contig\":\"chr1\",\"position\":97596136}},\"includeStart\":false,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EBas..." (Ref __iruid_5116)) (WriteMetadata "{\"name\":\"RVDSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries/rows\",\"spec\":{\"name\":\"RVDSpecMaker\",\"codecSpec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"+EBaseStruct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+EArray[+EBaseStruct{hwe:EBaseStruct{het_freq_hwe:+EFloat64,p_value:+EFloat64}}]}\",\"_vType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"_bufferSpec\":{\"name\":\"LEB128BufferSpec\",\"child\":{\"name\":\"BlockingBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"LZ4HCBlockBufferSpec\",\"blockSize\":32768,\"child\":{\"name\":\"StreamBlockBufferSpec\"}}}}},\"key\":[],\"bounds\":[{\"start\":{},\"end\":{},\"includeStart\":true,\"includeEnd\":true}],\"indexSpec\":{\"_relPath\":\"../../index\",\"_leafCodec\":{\"name\":\"TypedCodecSpec\",\"_eType\":\"EBaseStruct{first_idx:+EInt64,keys:+EArray[+EBaseStruct{key:+EB..." (Ref __iruid_5116)))) (Let __iruid_5118 (ToArray (StreamMap __iruid_5119 (ToStream False (Ref __iruid_5040)) (SelectFields (partitionCounts distinctlyKeyed firstKey lastKey) (Ref __iruid_5119)))) (Begin (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/rows\",\"typ\":{\"rowType\":\"Struct{locus:Locus(GRCh38),alleles:Array[String]}\",\"key\":[\"locus\",\"alleles\"],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description..." (Ref __iruid_5118)) (WriteMetadata "{\"name\":\"TableSpecWriter\",\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht/entries\",\"typ\":{\"rowType\":\"Struct{`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:Array[Struct{hwe:Struct{het_freq_hwe:Float64,p_value:Float64}}]}\",\"key\":[],\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{..." (ToArray (StreamMap __iruid_5120 (ToStream False (Ref __iruid_5118)) (InsertFields (SelectFields (partitionCounts distinctlyKeyed) (Ref __iruid_5120)) None (firstKey (Literal Struct{} )) (lastKey (Literal Struct{} )))))) (WriteMetadata "{\"path\":\"gs://fc-secure-84b9e4eb-e2fd-4af7-983e-6fb585690afd/andrew/find_variants//hwe_gnomad.ht\",\"typ\":{\"globalType\":\"Struct{global_annotation_descriptions:Struct{gnomad_sex_imputation_ploidy_cutoffs:Struct{Description:String},gnomad_population_inference_pca_metrics:Struct{Description:String},sample_hard_filter_cutoffs:Struct{Description:String},gnomad_sample_qc_metric_outlier_cutoffs:Struct{Description:String},gnomad_age_distribution:Struct{Description:String,sub_globals:Struct{bin_edges:Struct{Description:String},bin_freq:Struct{Description:String},n_smaller:Struct{Description:String},n_larger:Struct{Description:String}}},hgdp_tgp_freq_meta:Struct{Description:String},gnomad_freq_meta:Struct{Description:String},hgdp_tgp_freq_index_dict:Struct{Description:String},gnomad_freq_index_dict:Struct{Description:String},gnomad_faf_meta:Struct{Description:String},gnomad_faf_index_dict:Struct{Description:String},variant_filtering_model:Struct{Description:Set[String],sub_globals:Struct{..." (MakeStruct (cols (GetField partitionCounts (Ref __iruid_5038))) (rows (ToArray (StreamMap __iruid_5121 (ToStream False (Ref __iruid_5118)) (GetField partitionCounts (Ref __iruid_5121))))))))))))))))))))))) 2023-08-16 15:03:57.200 root: INFO: optimize optimize: compileLowerer, initial IR: before: IR size 1: (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[+PCString],a_index:+PInt32,old_alleles:PCArray[PCString],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 0) 2023-08-16 15:03:57.200 root: INFO: optimize optimize: compileLowerer, initial IR: after: IR size 1: (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[+PCString],a_index:+PInt32,old_alleles:PCArray[PCString],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 0) 2023-08-16 15:03:57.201 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: before: IR size 1: (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[+PCString],a_index:+PInt32,old_alleles:PCArray[PCString],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 0) 2023-08-16 15:03:57.201 root: INFO: optimize optimize: compileLowerer, after InlineApplyIR: after: IR size 1: (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[+PCString],a_index:+PInt32,old_alleles:PCArray[PCString],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 0) 2023-08-16 15:03:57.202 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: before: IR size 1: (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[+PCString],a_index:+PInt32,old_alleles:PCArray[PCString],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 0) 2023-08-16 15:03:57.202 root: INFO: optimize optimize: compileLowerer, after LowerArrayAggsToRunAggs: after: IR size 1: (In SingleCodeEmitParamType(true, PTypeReferenceSingleCodeType(+PCStruct{locus:PCLocus(GRCh38),alleles:PCArray[+PCString],a_index:+PInt32,old_alleles:PCArray[PCString],`the entries! [877f12a8827e18f61222c6c8c5fb04a8]`:+PCArray[PCStruct{GQ:PInt32,GT:PCCall,PL:PCArray[PInt32]}]})) 0) 2023-08-16 15:03:57.204 root: INFO: instruction count: 3: __C2126HailClassLoaderContainer. 2023-08-16 15:03:57.204 root: INFO: instruction count: 3: __C2126HailClassLoaderContainer. 2023-08-16 15:03:57.205 root: INFO: instruction count: 3: __C2127FSContainer. 2023-08-16 15:03:57.205 root: INFO: instruction count: 3: __C2127FSContainer. 2023-08-16 15:03:57.205 root: INFO: instruction count: 3: __C2128Compiled. 2023-08-16 15:03:57.205 root: INFO: instruction count: 12: __C2128Compiled.apply 2023-08-16 15:03:57.205 root: INFO: instruction count: 9: __C2128Compiled.setPartitionIndex 2023-08-16 15:03:57.205 root: INFO: instruction count: 4: __C2128Compiled.addPartitionRegion 2023-08-16 15:03:57.205 root: INFO: instruction count: 4: __C2128Compiled.setPool 2023-08-16 15:03:57.205 root: INFO: instruction count: 3: __C2128Compiled.addHailClassLoader 2023-08-16 15:03:57.205 root: INFO: instruction count: 3: __C2128Compiled.addFS 2023-08-16 15:03:57.210 MemoryStore: INFO: Block broadcast_8 stored as values in memory (estimated size 56.0 B, free 22.0 GiB) 2023-08-16 15:03:57.212 MemoryStore: INFO: Block broadcast_8_piece0 stored as bytes in memory (estimated size 75.0 B, free 22.0 GiB) 2023-08-16 15:03:57.212 BlockManagerInfo: INFO: Added broadcast_8_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 75.0 B, free: 22.0 GiB) 2023-08-16 15:03:57.214 SparkContext: INFO: Created broadcast 8 from broadcast at SparkBackend.scala:342 2023-08-16 15:03:57.461 root: INFO: encoder cache miss (1 hits, 9 misses, 0.100) 2023-08-16 15:03:57.462 root: INFO: instruction count: 3: __C2527HailClassLoaderContainer. 2023-08-16 15:03:57.462 root: INFO: instruction count: 3: __C2527HailClassLoaderContainer. 2023-08-16 15:03:57.462 root: INFO: instruction count: 3: __C2528FSContainer. 2023-08-16 15:03:57.462 root: INFO: instruction count: 3: __C2528FSContainer. 2023-08-16 15:03:57.463 root: INFO: instruction count: 3: __C2529etypeEncode. 2023-08-16 15:03:57.463 root: INFO: instruction count: 7: __C2529etypeEncode.apply 2023-08-16 15:03:57.463 root: INFO: instruction count: 33: __C2529etypeEncode.__m2530ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_ENDANDr_binaryANDr_binaryEND 2023-08-16 15:03:57.463 root: INFO: instruction count: 1: __C2529etypeEncode.__m2531ENCODE_SBaseStructPointer_TO_r_struct_of_END 2023-08-16 15:03:57.463 root: INFO: instruction count: 16: __C2529etypeEncode.__m2532ENCODE_SStringPointer_TO_r_binary 2023-08-16 15:03:57.466 MemoryStore: INFO: Block broadcast_9 stored as values in memory (estimated size 152.0 B, free 22.0 GiB) 2023-08-16 15:03:57.468 MemoryStore: INFO: Block broadcast_9_piece0 stored as bytes in memory (estimated size 113.0 B, free 22.0 GiB) 2023-08-16 15:03:57.468 BlockManagerInfo: INFO: Added broadcast_9_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 113.0 B, free: 22.0 GiB) 2023-08-16 15:03:57.469 SparkContext: INFO: Created broadcast 9 from broadcast at SparkBackend.scala:342 2023-08-16 15:03:57.470 root: INFO: instruction count: 3: __C1727HailClassLoaderContainer. 2023-08-16 15:03:57.470 root: INFO: instruction count: 3: __C1727HailClassLoaderContainer. 2023-08-16 15:03:57.470 root: INFO: instruction count: 3: __C1728FSContainer. 2023-08-16 15:03:57.470 root: INFO: instruction count: 3: __C1728FSContainer. 2023-08-16 15:03:57.754 root: INFO: instruction count: 3: __C1729collect_distributed_array_matrix_native_writer. 2023-08-16 15:03:57.756 root: INFO: instruction count: 475: __C1729collect_distributed_array_matrix_native_writer.apply 2023-08-16 15:03:57.756 root: INFO: instruction count: 17: __C1729collect_distributed_array_matrix_native_writer.apply 2023-08-16 15:03:57.756 root: INFO: instruction count: 27: __C1729collect_distributed_array_matrix_native_writer.__m1730DECODE_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_array_of_r_int32ENDANDr_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDENDANDr_binaryENDEND_TO_SBaseStructPointer 2023-08-16 15:03:57.756 root: INFO: instruction count: 26: __C1729collect_distributed_array_matrix_native_writer.__m1731INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_array_of_r_int32ENDANDr_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDENDANDr_binaryEND_TO_r_struct_of_r_tuple_of_r_tuple_of_r_array_of_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDENDANDr_array_of_r_int32ENDANDr_array_of_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDENDENDANDr_stringEND 2023-08-16 15:03:57.756 root: INFO: instruction count: 26: __C1729collect_distributed_array_matrix_native_writer.__m1732INPLACE_DECODE_r_struct_of_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_array_of_r_int32ENDANDr_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDEND_TO_r_tuple_of_r_tuple_of_r_array_of_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDENDANDr_array_of_r_int32ENDANDr_array_of_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDENDEND 2023-08-16 15:03:57.756 root: INFO: instruction count: 26: __C1729collect_distributed_array_matrix_native_writer.__m1733INPLACE_DECODE_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_array_of_r_int32END_TO_r_tuple_of_r_array_of_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDENDANDr_array_of_r_int32END 2023-08-16 15:03:57.756 root: INFO: instruction count: 58: __C1729collect_distributed_array_matrix_native_writer.__m1734INPLACE_DECODE_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND_TO_r_array_of_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDEND 2023-08-16 15:03:57.756 root: INFO: instruction count: 53: __C1729collect_distributed_array_matrix_native_writer.__m1735INPLACE_DECODE_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND_TO_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDEND 2023-08-16 15:03:57.756 root: INFO: instruction count: 10: __C1729collect_distributed_array_matrix_native_writer.__m1736INPLACE_DECODE_r_int64_TO_r_int64 2023-08-16 15:03:57.756 root: INFO: instruction count: 31: __C1729collect_distributed_array_matrix_native_writer.__m1737INPLACE_DECODE_r_binary_TO_r_string 2023-08-16 15:03:57.756 root: INFO: instruction count: 44: __C1729collect_distributed_array_matrix_native_writer.__m1738INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolEND_TO_r_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32END 2023-08-16 15:03:57.757 root: INFO: instruction count: 26: __C1729collect_distributed_array_matrix_native_writer.__m1739INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32END_TO_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32END 2023-08-16 15:03:57.757 root: INFO: instruction count: 57: __C1729collect_distributed_array_matrix_native_writer.__m1740INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryEND_TO_r_struct_of_r_locusANDo_array_of_r_stringEND 2023-08-16 15:03:57.757 root: INFO: instruction count: 26: __C1729collect_distributed_array_matrix_native_writer.__m1741INPLACE_DECODE_r_struct_of_r_binaryANDr_int32END_TO_r_locus 2023-08-16 15:03:57.757 root: INFO: instruction count: 10: __C1729collect_distributed_array_matrix_native_writer.__m1742INPLACE_DECODE_r_int32_TO_r_int32 2023-08-16 15:03:57.757 root: INFO: instruction count: 58: __C1729collect_distributed_array_matrix_native_writer.__m1743INPLACE_DECODE_o_array_of_r_binary_TO_o_array_of_r_string 2023-08-16 15:03:57.757 root: INFO: instruction count: 10: __C1729collect_distributed_array_matrix_native_writer.__m1744INPLACE_DECODE_r_bool_TO_r_bool 2023-08-16 15:03:57.757 root: INFO: instruction count: 58: __C1729collect_distributed_array_matrix_native_writer.__m1745INPLACE_DECODE_r_array_of_r_int32_TO_r_array_of_r_int32 2023-08-16 15:03:57.757 root: INFO: instruction count: 58: __C1729collect_distributed_array_matrix_native_writer.__m1747DECODE_r_struct_of_o_struct_of_o_struct_of_r_array_of_o_struct_of_ENDENDANDo_struct_of_r_array_of_o_struct_of_r_array_of_r_int32ENDENDENDEND_TO_SBaseStructPointer 2023-08-16 15:03:57.757 root: INFO: instruction count: 75: __C1729collect_distributed_array_matrix_native_writer.__m1748INPLACE_DECODE_o_struct_of_o_struct_of_r_array_of_o_struct_of_ENDENDANDo_struct_of_r_array_of_o_struct_of_r_array_of_r_int32ENDENDEND_TO_o_struct_of_o_struct_of_r_array_of_o_struct_of_ENDENDANDo_struct_of_r_array_of_o_struct_of_r_array_of_r_int32ENDENDEND 2023-08-16 15:03:57.757 root: INFO: instruction count: 17: __C1729collect_distributed_array_matrix_native_writer.__m1749INPLACE_DECODE_o_struct_of_r_array_of_o_struct_of_ENDEND_TO_o_struct_of_r_array_of_o_struct_of_ENDEND 2023-08-16 15:03:57.758 root: INFO: instruction count: 114: __C1729collect_distributed_array_matrix_native_writer.__m1750INPLACE_DECODE_r_array_of_o_struct_of_END_TO_r_array_of_o_struct_of_END 2023-08-16 15:03:57.758 root: INFO: instruction count: 8: __C1729collect_distributed_array_matrix_native_writer.__m1751INPLACE_DECODE_o_struct_of_END_TO_o_struct_of_END 2023-08-16 15:03:57.758 root: INFO: instruction count: 17: __C1729collect_distributed_array_matrix_native_writer.__m1752INPLACE_DECODE_o_struct_of_r_array_of_o_struct_of_r_array_of_r_int32ENDEND_TO_o_struct_of_r_array_of_o_struct_of_r_array_of_r_int32ENDEND 2023-08-16 15:03:57.758 root: INFO: instruction count: 114: __C1729collect_distributed_array_matrix_native_writer.__m1753INPLACE_DECODE_r_array_of_o_struct_of_r_array_of_r_int32END_TO_r_array_of_o_struct_of_r_array_of_r_int32END 2023-08-16 15:03:57.758 root: INFO: instruction count: 17: __C1729collect_distributed_array_matrix_native_writer.__m1754INPLACE_DECODE_o_struct_of_r_array_of_r_int32END_TO_o_struct_of_r_array_of_r_int32END 2023-08-16 15:03:57.758 root: INFO: instruction count: 49: __C1729collect_distributed_array_matrix_native_writer.__m1759concat 2023-08-16 15:03:57.758 root: INFO: instruction count: 36: __C1729collect_distributed_array_matrix_native_writer.__m1777DECODE_o_struct_of_r_int64ANDr_array_of_r_struct_of_r_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDr_int64ANDr_struct_of_o_int64ENDENDEND_TO_SBaseStructPointer 2023-08-16 15:03:57.758 root: INFO: instruction count: 58: __C1729collect_distributed_array_matrix_native_writer.__m1778INPLACE_DECODE_r_array_of_r_struct_of_r_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDr_int64ANDr_struct_of_o_int64ENDEND_TO_r_array_of_r_struct_of_r_struct_of_o_locusANDo_array_of_o_stringENDANDr_int64ANDr_struct_of_o_int64ENDEND 2023-08-16 15:03:57.758 root: INFO: instruction count: 35: __C1729collect_distributed_array_matrix_native_writer.__m1779INPLACE_DECODE_r_struct_of_r_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDr_int64ANDr_struct_of_o_int64ENDEND_TO_r_struct_of_r_struct_of_o_locusANDo_array_of_o_stringENDANDr_int64ANDr_struct_of_o_int64ENDEND 2023-08-16 15:03:57.758 root: INFO: instruction count: 75: __C1729collect_distributed_array_matrix_native_writer.__m1780INPLACE_DECODE_r_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryEND_TO_r_struct_of_o_locusANDo_array_of_o_stringEND 2023-08-16 15:03:57.758 root: INFO: instruction count: 26: __C1729collect_distributed_array_matrix_native_writer.__m1781INPLACE_DECODE_o_struct_of_r_binaryANDr_int32END_TO_o_locus 2023-08-16 15:03:57.759 root: INFO: instruction count: 114: __C1729collect_distributed_array_matrix_native_writer.__m1782INPLACE_DECODE_o_array_of_o_binary_TO_o_array_of_o_string 2023-08-16 15:03:57.759 root: INFO: instruction count: 31: __C1729collect_distributed_array_matrix_native_writer.__m1783INPLACE_DECODE_o_binary_TO_o_string 2023-08-16 15:03:57.759 root: INFO: instruction count: 48: __C1729collect_distributed_array_matrix_native_writer.__m1784INPLACE_DECODE_r_struct_of_o_int64END_TO_r_struct_of_o_int64END 2023-08-16 15:03:57.759 root: INFO: instruction count: 10: __C1729collect_distributed_array_matrix_native_writer.__m1785INPLACE_DECODE_o_int64_TO_o_int64 2023-08-16 15:03:57.759 root: INFO: instruction count: 27: __C1729collect_distributed_array_matrix_native_writer.__m1786DECODE_o_struct_of_r_array_of_r_struct_of_r_int64ANDr_int64ANDr_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDr_int64ANDr_struct_of_o_int64ENDENDEND_TO_SBaseStructPointer 2023-08-16 15:03:57.759 root: INFO: instruction count: 58: 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__C1729collect_distributed_array_matrix_native_writer.__m1839DECODE_r_struct_of_r_array_of_o_struct_of_o_int32ANDo_int32ANDo_int32ANDo_binaryANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_array_of_o_int32ANDo_array_of_o_int32ANDo_boolENDEND_TO_SBaseStructPointer 2023-08-16 15:03:57.765 root: INFO: instruction count: 114: __C1729collect_distributed_array_matrix_native_writer.__m1840INPLACE_DECODE_r_array_of_o_struct_of_o_int32ANDo_int32ANDo_int32ANDo_binaryANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_array_of_o_int32ANDo_array_of_o_int32ANDo_boolEND_TO_r_array_of_o_struct_of_o_int32ANDo_callANDo_array_of_o_int32END 2023-08-16 15:03:57.765 root: INFO: instruction count: 215: __C1729collect_distributed_array_matrix_native_writer.__m1841INPLACE_DECODE_o_struct_of_o_int32ANDo_int32ANDo_int32ANDo_binaryANDo_int32ANDo_array_of_o_int32ANDo_int32ANDo_int32ANDo_array_of_o_int32ANDo_array_of_o_int32ANDo_boolEND_TO_o_struct_of_o_int32ANDo_callANDo_array_of_o_int32END 2023-08-16 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INFO: instruction count: 3: __C2534applySpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2724__m1818SKIP_o_struct_of_o_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_int32ANDo_int32ANDo_int32ANDo_int32ANDo_binaryANDo_array_of_o_binaryANDo_int32ANDo_array_of_o_struct_of_o_binaryANDo_binaryENDANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_float64ANDo_int32ANDo_int32ANDo_binaryANDo_binaryANDo_float64ANDo_int32ANDo_binaryANDo_binaryANDo_binaryANDo_int32ANDo_binaryANDo_binaryENDSpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2737__m1913split_LetSpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2741__m2038split_LetSpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2813__m2154split_ToArraySpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2826__m2171split_StreamFold2Spills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2827__m2283split_ToArraySpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2842__m2298btree_deepCopySpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2850__m2319split_ToArraySpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2851__m2354btree_getSpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2878__m2358btree_insertSpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2977__m2459split_ApplySpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2978__m2490writeInternalNodeSpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C2981__m2503writeLeafNodeSpills. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C1855RGContainer_GRCh38. 2023-08-16 15:03:57.815 root: INFO: instruction count: 3: __C1855RGContainer_GRCh38. 2023-08-16 15:03:57.816 root: INFO: instruction count: 3: __C2134staticWrapperClass_1. 2023-08-16 15:03:57.946 root: INFO: encoder cache miss (1 hits, 10 misses, 0.091) 2023-08-16 15:03:57.952 root: INFO: instruction count: 3: __C3197HailClassLoaderContainer. 2023-08-16 15:03:57.952 root: INFO: instruction count: 3: __C3197HailClassLoaderContainer. 2023-08-16 15:03:57.952 root: INFO: instruction count: 3: __C3198FSContainer. 2023-08-16 15:03:57.952 root: INFO: instruction count: 3: __C3198FSContainer. 2023-08-16 15:03:57.955 root: INFO: instruction count: 3: __C3199etypeEncode. 2023-08-16 15:03:57.955 root: INFO: instruction count: 7: __C3199etypeEncode.apply 2023-08-16 15:03:57.956 root: INFO: instruction count: 181: __C3199etypeEncode.__m3200ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_struct_of_ENDANDr_array_of_r_array_of_r_int32ANDr_array_of_r_struct_of_r_int64ANDr_boolANDr_struct_of_ENDANDr_struct_of_ENDENDANDr_struct_of_r_int64ANDr_binaryENDANDr_array_of_r_array_of_r_int32ANDr_struct_of_r_int64ANDr_binaryENDANDr_array_of_r_binaryANDr_binaryANDr_array_of_r_struct_of_r_binaryANDr_binaryENDEND 2023-08-16 15:03:57.956 root: INFO: instruction count: 35: __C3199etypeEncode.__m3201ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND 2023-08-16 15:03:57.956 root: INFO: instruction count: 75: __C3199etypeEncode.__m3202ENCODE_SBaseStructPointer_TO_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND 2023-08-16 15:03:57.956 root: INFO: instruction count: 4: __C3199etypeEncode.__m3203ENCODE_SInt64$_TO_r_int64 2023-08-16 15:03:57.956 root: INFO: instruction count: 16: __C3199etypeEncode.__m3204ENCODE_SStringPointer_TO_r_binary 2023-08-16 15:03:57.956 root: INFO: instruction count: 41: __C3199etypeEncode.__m3205ENCODE_SIntervalPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolEND 2023-08-16 15:03:57.956 root: INFO: instruction count: 21: __C3199etypeEncode.__m3206ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32END 2023-08-16 15:03:57.956 root: INFO: instruction count: 74: __C3199etypeEncode.__m3207ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryEND 2023-08-16 15:03:57.956 root: INFO: instruction count: 25: __C3199etypeEncode.__m3208ENCODE_SCanonicalLocusPointer_TO_r_struct_of_r_binaryANDr_int32END 2023-08-16 15:03:57.956 root: INFO: instruction count: 4: __C3199etypeEncode.__m3209ENCODE_SInt32$_TO_r_int32 2023-08-16 15:03:57.956 root: INFO: instruction count: 39: __C3199etypeEncode.__m3210ENCODE_SIndexablePointer_TO_o_array_of_r_binary 2023-08-16 15:03:57.956 root: INFO: instruction count: 4: __C3199etypeEncode.__m3211ENCODE_SBoolean$_TO_r_bool 2023-08-16 15:03:57.956 root: INFO: instruction count: 1: __C3199etypeEncode.__m3212ENCODE_SBaseStructPointer_TO_r_struct_of_END 2023-08-16 15:03:57.956 root: INFO: instruction count: 51: __C3199etypeEncode.__m3213ENCODE_SIndexablePointer_TO_r_array_of_r_array_of_r_int32 2023-08-16 15:03:57.956 root: INFO: instruction count: 39: __C3199etypeEncode.__m3214ENCODE_SIndexablePointer_TO_r_array_of_r_int32 2023-08-16 15:03:57.956 root: INFO: instruction count: 35: __C3199etypeEncode.__m3215ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_int64ANDr_boolANDr_struct_of_ENDANDr_struct_of_ENDEND 2023-08-16 15:03:57.956 root: INFO: instruction count: 41: __C3199etypeEncode.__m3216ENCODE_SBaseStructPointer_TO_r_struct_of_r_int64ANDr_boolANDr_struct_of_ENDANDr_struct_of_ENDEND 2023-08-16 15:03:57.956 root: INFO: instruction count: 25: __C3199etypeEncode.__m3217ENCODE_SBaseStructPointer_TO_r_struct_of_r_int64ANDr_binaryEND 2023-08-16 15:03:57.956 root: INFO: instruction count: 39: __C3199etypeEncode.__m3218ENCODE_SIndexablePointer_TO_r_array_of_r_binary 2023-08-16 15:03:57.956 root: INFO: instruction count: 35: __C3199etypeEncode.__m3219ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_binaryANDr_binaryEND 2023-08-16 15:03:57.956 root: INFO: instruction count: 25: __C3199etypeEncode.__m3220ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_binaryEND 2023-08-16 15:03:57.967 root: INFO: RegionPool: REPORT_THRESHOLD: 528.0K allocated (256.0K blocks / 272.0K chunks), regions.size = 2, 0 current java objects, thread 16: Thread-4 2023-08-16 15:03:57.975 MemoryStore: INFO: Block broadcast_10 stored as values in memory (estimated size 105.6 KiB, free 22.0 GiB) 2023-08-16 15:03:57.977 MemoryStore: INFO: Block broadcast_10_piece0 stored as bytes in memory (estimated size 27.0 KiB, free 22.0 GiB) 2023-08-16 15:03:57.978 BlockManagerInfo: INFO: Added broadcast_10_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 27.0 KiB, free: 22.0 GiB) 2023-08-16 15:03:57.979 SparkContext: INFO: Created broadcast 10 from broadcast at SparkBackend.scala:342 2023-08-16 15:03:57.980 root: INFO: instruction count: 3: __C1277HailClassLoaderContainer. 2023-08-16 15:03:57.980 root: INFO: instruction count: 3: __C1277HailClassLoaderContainer. 2023-08-16 15:03:57.980 root: INFO: instruction count: 3: __C1278FSContainer. 2023-08-16 15:03:57.980 root: INFO: instruction count: 3: __C1278FSContainer. 2023-08-16 15:03:58.172 root: INFO: instruction count: 3: __C1279Compiled. 2023-08-16 15:03:58.173 root: INFO: instruction count: 255: __C1279Compiled.apply 2023-08-16 15:03:58.173 root: INFO: instruction count: 127: __C1279Compiled.__m1281split_ToArray 2023-08-16 15:03:58.173 root: INFO: instruction count: 189: __C1279Compiled.__m1289DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_ 2023-08-16 15:03:58.174 root: INFO: instruction count: 152: __C1279Compiled.__m1290INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_set_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 17: __C1279Compiled.__m1291INPLACE_DECODE_r_struct_of_r_binaryEND_TO_r_struct_of_r_stringEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 31: __C1279Compiled.__m1292INPLACE_DECODE_r_binary_TO_r_string 2023-08-16 15:03:58.174 root: INFO: instruction count: 26: __C1279Compiled.__m1293INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 44: __C1279Compiled.__m1294INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 26: __C1279Compiled.__m1295INPLACE_DECODE_r_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_set_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 58: __C1279Compiled.__m1296INPLACE_DECODE_r_array_of_r_binary_TO_r_set_of_r_string 2023-08-16 15:03:58.174 root: INFO: instruction count: 62: __C1279Compiled.__m1297INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 26: __C1279Compiled.__m1298INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 26: __C1279Compiled.__m1299INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 116: __C1279Compiled.__m1300INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 26: __C1279Compiled.__m1301INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 80: __C1279Compiled.__m1302INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 26: __C1279Compiled.__m1303INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 116: __C1279Compiled.__m1304INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 26: __C1279Compiled.__m1305INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 116: __C1279Compiled.__m1306INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.174 root: INFO: instruction count: 26: __C1279Compiled.__m1307INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 116: __C1279Compiled.__m1308INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 26: __C1279Compiled.__m1309INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_tuple_of_r_stringENDANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 17: __C1279Compiled.__m1310INPLACE_DECODE_r_struct_of_r_binaryEND_TO_r_tuple_of_r_stringEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 80: __C1279Compiled.__m1311INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 26: __C1279Compiled.__m1312INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 44: __C1279Compiled.__m1313INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 26: __C1279Compiled.__m1314INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 26: __C1279Compiled.__m1315INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 26: __C1279Compiled.__m1316INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 53: __C1279Compiled.__m1317INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 26: __C1279Compiled.__m1318INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 98: __C1279Compiled.__m1319INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 26: __C1279Compiled.__m1320INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 26: __C1279Compiled.__m1321INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 26: __C1279Compiled.__m1322INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 35: __C1279Compiled.__m1323INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.175 root: INFO: instruction count: 35: __C1279Compiled.__m1324INPLACE_DECODE_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ENDANDr_float64END_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ENDANDr_float64END 2023-08-16 15:03:58.175 root: INFO: instruction count: 44: __C1279Compiled.__m1325INPLACE_DECODE_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:58.175 root: INFO: instruction count: 10: __C1279Compiled.__m1326INPLACE_DECODE_r_float64_TO_r_float64 2023-08-16 15:03:58.175 root: INFO: instruction count: 35: __C1279Compiled.__m1327INPLACE_DECODE_r_struct_of_r_float64ANDr_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:58.175 root: INFO: instruction count: 26: __C1279Compiled.__m1328INPLACE_DECODE_r_struct_of_r_int32ANDr_float64END_TO_r_struct_of_r_int32ANDr_float64END 2023-08-16 15:03:58.175 root: INFO: instruction count: 10: __C1279Compiled.__m1329INPLACE_DECODE_r_int32_TO_r_int32 2023-08-16 15:03:58.176 root: INFO: instruction count: 80: __C1279Compiled.__m1330INPLACE_DECODE_r_struct_of_r_int32ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END_TO_r_struct_of_r_int32ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:58.176 root: INFO: instruction count: 44: __C1279Compiled.__m1331INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDENDANDr_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float 2023-08-16 15:03:58.176 root: INFO: instruction count: 89: __C1279Compiled.__m1332INPLACE_DECODE_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDEND_TO_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_s 2023-08-16 15:03:58.176 root: INFO: instruction count: 98: __C1279Compiled.__m1333INPLACE_DECODE_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:58.176 root: INFO: instruction count: 58: __C1279Compiled.__m1334INPLACE_DECODE_r_array_of_r_float64_TO_r_array_of_r_float64 2023-08-16 15:03:58.176 root: INFO: instruction count: 89: __C1279Compiled.__m1335INPLACE_DECODE_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDEND_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDEND 2023-08-16 15:03:58.176 root: INFO: instruction count: 44: __C1279Compiled.__m1336INPLACE_DECODE_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:58.176 root: INFO: instruction count: 10: __C1279Compiled.__m1337INPLACE_DECODE_r_bool_TO_r_bool 2023-08-16 15:03:58.176 root: INFO: instruction count: 44: __C1279Compiled.__m1338INPLACE_DECODE_r_struct_of_r_array_of_r_float64ANDr_array_of_r_int32ANDr_int32ANDr_int32END_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_int32ANDr_int32ANDr_int32END 2023-08-16 15:03:58.176 root: INFO: instruction count: 58: __C1279Compiled.__m1339INPLACE_DECODE_r_array_of_r_int32_TO_r_array_of_r_int32 2023-08-16 15:03:58.176 root: INFO: instruction count: 242: __C1279Compiled.__m1340INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binary 2023-08-16 15:03:58.176 root: INFO: instruction count: 26: __C1279Compiled.__m1341INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.176 root: INFO: instruction count: 44: __C1279Compiled.__m1342INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.176 root: INFO: instruction count: 26: __C1279Compiled.__m1343INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.176 root: INFO: instruction count: 62: __C1279Compiled.__m1344INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.176 root: INFO: instruction count: 26: __C1279Compiled.__m1345INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.176 root: INFO: instruction count: 26: __C1279Compiled.__m1346INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.176 root: INFO: instruction count: 26: __C1279Compiled.__m1347INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDENDEND 2023-08-16 15:03:58.176 root: INFO: instruction count: 53: __C1279Compiled.__m1348INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDEND_TO_r_struct_of_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDANDr_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 26: __C1279Compiled.__m1349INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 26: __C1279Compiled.__m1350INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 224: __C1279Compiled.__m1351INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 26: __C1279Compiled.__m1352INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 44: __C1279Compiled.__m1353INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 26: __C1279Compiled.__m1354INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 26: __C1279Compiled.__m1355INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 26: __C1279Compiled.__m1356INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 35: __C1279Compiled.__m1357INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 17: __C1279Compiled.__m1358INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 35: __C1279Compiled.__m1359INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 26: __C1279Compiled.__m1360INPLACE_DECODE_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_stringANDr_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 26: __C1279Compiled.__m1361INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 17: __C1279Compiled.__m1362INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 35: __C1279Compiled.__m1363INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 17: __C1279Compiled.__m1364INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND_TO_r_struct_of_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 26: __C1279Compiled.__m1365INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND_TO_r_struct_of_r_struct_of_r_stringENDANDr_struct_of_r_stringENDEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 58: __C1279Compiled.__m1366INPLACE_DECODE_r_array_of_r_array_of_r_struct_of_r_binaryANDr_binaryEND_TO_r_array_of_r_dict_of_r_stringANDr_string 2023-08-16 15:03:58.177 root: INFO: instruction count: 58: __C1279Compiled.__m1367INPLACE_DECODE_r_array_of_r_struct_of_r_binaryANDr_binaryEND_TO_r_dict_of_r_stringANDr_string 2023-08-16 15:03:58.177 root: INFO: instruction count: 26: __C1279Compiled.__m1368INPLACE_DECODE_r_struct_of_r_binaryANDr_binaryEND_TO_r_struct_of_r_stringANDr_stringEND 2023-08-16 15:03:58.177 root: INFO: instruction count: 58: __C1279Compiled.__m1369INPLACE_DECODE_r_array_of_r_struct_of_r_binaryANDr_int32END_TO_r_dict_of_r_stringANDr_int32 2023-08-16 15:03:58.177 root: INFO: instruction count: 26: __C1279Compiled.__m1370INPLACE_DECODE_r_struct_of_r_binaryANDr_int32END_TO_r_struct_of_r_stringANDr_int32END 2023-08-16 15:03:58.177 root: INFO: instruction count: 62: __C1279Compiled.__m1371INPLACE_DECODE_r_struct_of_r_binaryANDr_binaryANDr_struct_of_r_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ENDANDr_array_of_r_binaryANDr_array_of_r_binaryEND_TO_r_struct_of_r_stringANDr_stringANDr_struct_of_r_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ENDANDr_array_of_r_stringANDr_array_of_r_stringEND 2023-08-16 15:03:58.178 root: INFO: instruction count: 26: __C1279Compiled.__m1372INPLACE_DECODE_r_struct_of_r_float64ANDr_float64END_TO_r_struct_of_r_float64ANDr_float64END 2023-08-16 15:03:58.178 root: INFO: instruction count: 58: __C1279Compiled.__m1373INPLACE_DECODE_r_array_of_r_binary_TO_r_array_of_r_string 2023-08-16 15:03:58.178 root: INFO: instruction count: 12: __C1279Compiled.__m1376setup_jab 2023-08-16 15:03:58.178 root: INFO: instruction count: 35: __C1279Compiled.__m1381arrayref_bounds_check 2023-08-16 15:03:58.178 root: INFO: instruction count: 332: __C1279Compiled.__m1382split_ToArray 2023-08-16 15:03:58.178 root: INFO: instruction count: 192: __C1279Compiled.__m1390DECODE_r_struct_of_r_binaryANDo_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_int64ANDr_int64ANDr_int64ANDr_int64ANDo_int64ANDr_int64ANDo_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_float32ANDo_float32ANDo_float32ANDo_float32ANDo_float32ANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_int64ANDo_float64ANDo_int64ENDANDo_struct_of_o_array_of_o_float64ANDo_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDo_struct_of_o_array_of_r_binaryANDo_boolANDo_boolANDo_array_of_o_binaryENDANDo_boolANDo_boolANDo_struct_of_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDr_boolENDANDo_struct_of_o_binaryANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_float64ANDo_struct_of_o_binaryANDo_binaryENDANDo_array_of_o_float64ANDr_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolENDANDo_binaryENDANDo_boolEND_TO_SBaseStructPointer 2023-08-16 15:03:58.178 root: INFO: instruction count: 125: __C1279Compiled.__m1391SKIP_o_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:58.178 root: INFO: instruction count: 3: __C1279Compiled.__m1392SKIP_o_float64 2023-08-16 15:03:58.179 root: INFO: instruction count: 141: __C1279Compiled.__m1393SKIP_o_struct_of_o_int64ANDr_int64ANDr_int64ANDr_int64ANDo_int64ANDr_int64ANDo_int64ANDo_int64ANDo_int64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:58.179 root: INFO: instruction count: 3: __C1279Compiled.__m1394SKIP_o_int64 2023-08-16 15:03:58.179 root: INFO: instruction count: 3: __C1279Compiled.__m1395SKIP_r_int64 2023-08-16 15:03:58.179 root: INFO: instruction count: 186: __C1279Compiled.__m1396SKIP_o_struct_of_o_float32ANDo_float32ANDo_float32ANDo_float32ANDo_float32ANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_int64ANDo_float64ANDo_int64END 2023-08-16 15:03:58.179 root: INFO: instruction count: 3: __C1279Compiled.__m1397SKIP_o_float32 2023-08-16 15:03:58.179 root: INFO: instruction count: 7: __C1279Compiled.__m1398SKIP_o_binary 2023-08-16 15:03:58.179 root: INFO: instruction count: 186: __C1279Compiled.__m1399SKIP_o_struct_of_o_array_of_o_float64ANDo_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:58.179 root: INFO: instruction count: 51: __C1279Compiled.__m1400SKIP_o_array_of_o_float64 2023-08-16 15:03:58.179 root: INFO: instruction count: 125: __C1279Compiled.__m1401SKIP_o_struct_of_o_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:58.179 root: INFO: instruction count: 73: __C1279Compiled.__m1402SKIP_o_struct_of_o_array_of_r_binaryANDo_boolANDo_boolANDo_array_of_o_binaryEND 2023-08-16 15:03:58.179 root: INFO: instruction count: 22: __C1279Compiled.__m1403SKIP_o_array_of_r_binary 2023-08-16 15:03:58.179 root: INFO: instruction count: 7: __C1279Compiled.__m1404SKIP_r_binary 2023-08-16 15:03:58.179 root: INFO: instruction count: 3: __C1279Compiled.__m1405SKIP_o_bool 2023-08-16 15:03:58.179 root: INFO: instruction count: 51: __C1279Compiled.__m1406SKIP_o_array_of_o_binary 2023-08-16 15:03:58.179 root: INFO: instruction count: 16: __C1279Compiled.__m1407SKIP_o_struct_of_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64ENDANDr_boolEND 2023-08-16 15:03:58.179 root: INFO: instruction count: 22: __C1279Compiled.__m1408SKIP_r_array_of_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:58.179 root: INFO: instruction count: 86: __C1279Compiled.__m1409SKIP_r_struct_of_o_binaryANDo_float64ANDo_float64ANDo_float64ANDo_float64END 2023-08-16 15:03:58.179 root: INFO: instruction count: 3: __C1279Compiled.__m1410SKIP_r_bool 2023-08-16 15:03:58.180 root: INFO: instruction count: 151: __C1279Compiled.__m1411SKIP_o_struct_of_o_binaryANDo_binaryANDo_binaryANDo_binaryANDo_float64ANDo_float64ANDo_struct_of_o_binaryANDo_binaryENDANDo_array_of_o_float64ANDr_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolENDANDo_binaryEND 2023-08-16 15:03:58.180 root: INFO: instruction count: 47: __C1279Compiled.__m1412SKIP_o_struct_of_o_binaryANDo_binaryEND 2023-08-16 15:03:58.180 root: INFO: instruction count: 60: __C1279Compiled.__m1413SKIP_r_struct_of_o_array_of_o_float64ANDo_array_of_o_float64ANDo_boolEND 2023-08-16 15:03:58.180 root: INFO: instruction count: 12: __C1279Compiled.__m1416setup_jab 2023-08-16 15:03:58.180 root: INFO: instruction count: 347: __C1279Compiled.__m1425split_ToDict 2023-08-16 15:03:58.180 root: INFO: instruction count: 12: __C1279Compiled.__m1438setup_jab 2023-08-16 15:03:58.180 root: INFO: instruction count: 202: __C1279Compiled.__m1441arraySorter_outer 2023-08-16 15:03:58.180 root: INFO: instruction count: 93: __C1279Compiled.__m1442arraySorter_merge 2023-08-16 15:03:58.180 root: INFO: instruction count: 11: __C1279Compiled.__m1445ord_lt 2023-08-16 15:03:58.180 root: INFO: instruction count: 52: __C1279Compiled.__m1446ord_ltNonnull 2023-08-16 15:03:58.180 root: INFO: instruction count: 11: __C1279Compiled.__m1447ord_lt 2023-08-16 15:03:58.181 root: INFO: instruction count: 21: __C1279Compiled.__m1448ord_ltNonnull 2023-08-16 15:03:58.181 root: INFO: instruction count: 9: __C1279Compiled.__m1449ord_compareNonnull 2023-08-16 15:03:58.181 root: INFO: instruction count: 89: __C1279Compiled.__m1450ord_compareNonnull 2023-08-16 15:03:58.181 root: INFO: instruction count: 11: __C1279Compiled.__m1451ord_equiv 2023-08-16 15:03:58.181 root: INFO: instruction count: 21: __C1279Compiled.__m1452ord_equivNonnull 2023-08-16 15:03:58.181 root: INFO: instruction count: 36: __C1279Compiled.__m1453arraySorter_splitMerge 2023-08-16 15:03:58.181 root: INFO: instruction count: 264: __C1279Compiled.__m1454distinctFromSorted 2023-08-16 15:03:58.181 root: INFO: instruction count: 30: __C1279Compiled.__m1457ord_equiv 2023-08-16 15:03:58.181 root: INFO: instruction count: 39: __C1279Compiled.__m1458ord_equivNonnull 2023-08-16 15:03:58.182 root: INFO: instruction count: 191: __C1279Compiled.__m1466split_ToArray 2023-08-16 15:03:58.182 root: INFO: instruction count: 146: __C1279Compiled.__m1474split_Let 2023-08-16 15:03:58.182 root: INFO: instruction count: 60: __C1279Compiled.__m1477findElt 2023-08-16 15:03:58.182 root: INFO: instruction count: 11: __C1279Compiled.__m1478ord_lt 2023-08-16 15:03:58.182 root: INFO: instruction count: 44: __C1279Compiled.__m1479ord_ltNonnull 2023-08-16 15:03:58.182 root: INFO: instruction count: 11: __C1279Compiled.__m1481ord_equiv 2023-08-16 15:03:58.182 root: INFO: instruction count: 14: __C1279Compiled.__m1482ord_equivNonnull 2023-08-16 15:03:58.182 root: INFO: instruction count: 11: __C1279Compiled.__m1483ord_equiv 2023-08-16 15:03:58.182 root: INFO: instruction count: 31: __C1279Compiled.__m1484ord_equivNonnull 2023-08-16 15:03:58.182 root: INFO: instruction count: 241: __C1279Compiled.__m1493split_ToArray 2023-08-16 15:03:58.183 root: INFO: instruction count: 477: __C1279Compiled.__m1507split_Let 2023-08-16 15:03:58.183 root: INFO: instruction count: 12: __C1279Compiled.__m1516setup_jab 2023-08-16 15:03:58.183 root: INFO: instruction count: 202: __C1279Compiled.__m1519arraySorter_outer 2023-08-16 15:03:58.183 root: INFO: instruction count: 93: __C1279Compiled.__m1520arraySorter_merge 2023-08-16 15:03:58.183 root: INFO: instruction count: 11: __C1279Compiled.__m1523ord_lt 2023-08-16 15:03:58.183 root: INFO: instruction count: 136: __C1279Compiled.__m1524ord_ltNonnull 2023-08-16 15:03:58.183 root: INFO: instruction count: 24: __C1279Compiled.__m1525ord_lt 2023-08-16 15:03:58.183 root: INFO: instruction count: 30: __C1279Compiled.__m1526ord_equiv 2023-08-16 15:03:58.183 root: INFO: instruction count: 36: __C1279Compiled.__m1527arraySorter_splitMerge 2023-08-16 15:03:58.183 root: INFO: instruction count: 12: __C1279Compiled.__m1530setup_iab 2023-08-16 15:03:58.183 root: INFO: instruction count: 30: __C1279Compiled.__m1533ord_equiv 2023-08-16 15:03:58.183 root: INFO: instruction count: 99: __C1279Compiled.__m1534ord_equivNonnull 2023-08-16 15:03:58.184 root: INFO: instruction count: 36: __C1279Compiled.__m1553ENCODE_SBaseStructPointer_TO_r_struct_of_o_binaryEND 2023-08-16 15:03:58.184 root: INFO: instruction count: 16: __C1279Compiled.__m1554ENCODE_SStringPointer_TO_o_binary 2023-08-16 15:03:58.184 root: INFO: instruction count: 634: __C1279Compiled.__m1562split_CollectDistributedArray 2023-08-16 15:03:58.184 root: INFO: instruction count: 161: __C1279Compiled.__m1575split_ToArray 2023-08-16 15:03:58.185 root: INFO: instruction count: 162: __C1279Compiled.__m1589split_ToArray 2023-08-16 15:03:58.185 root: INFO: instruction count: 162: __C1279Compiled.__m1612split_ToArray 2023-08-16 15:03:58.185 root: INFO: instruction count: 161: __C1279Compiled.__m1638split_ToArray 2023-08-16 15:03:58.185 root: INFO: instruction count: 192: __C1279Compiled.__m1697split_ToArray 2023-08-16 15:03:58.185 root: INFO: instruction count: 221: __C1279Compiled.__m1716split_ToArray 2023-08-16 15:03:58.185 root: INFO: instruction count: 4: __C1279Compiled.setBackend 2023-08-16 15:03:58.185 root: INFO: instruction count: 9: __C1279Compiled.__m2987ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_array_of_r_int32ENDANDr_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDENDANDr_binaryENDEND 2023-08-16 15:03:58.186 root: INFO: instruction count: 21: __C1279Compiled.__m2988ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_array_of_r_int32ENDANDr_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDENDANDr_binaryEND 2023-08-16 15:03:58.186 root: INFO: instruction count: 33: __C1279Compiled.__m2989ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_array_of_r_int32ENDANDr_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDEND 2023-08-16 15:03:58.186 root: INFO: instruction count: 49: __C1279Compiled.__m2990ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_array_of_r_int32END 2023-08-16 15:03:58.186 root: INFO: instruction count: 35: __C1279Compiled.__m2991ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND 2023-08-16 15:03:58.186 root: INFO: instruction count: 75: __C1279Compiled.__m2992ENCODE_SBaseStructPointer_TO_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND 2023-08-16 15:03:58.186 root: INFO: instruction count: 4: __C1279Compiled.__m2993ENCODE_SInt64$_TO_r_int64 2023-08-16 15:03:58.186 root: INFO: instruction count: 16: __C1279Compiled.__m2994ENCODE_SStringPointer_TO_r_binary 2023-08-16 15:03:58.186 root: INFO: instruction count: 41: __C1279Compiled.__m2995ENCODE_SIntervalPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolEND 2023-08-16 15:03:58.186 root: INFO: instruction count: 21: __C1279Compiled.__m2996ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32END 2023-08-16 15:03:58.186 root: INFO: instruction count: 74: __C1279Compiled.__m2997ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryEND 2023-08-16 15:03:58.186 root: INFO: instruction count: 25: __C1279Compiled.__m2998ENCODE_SCanonicalLocusPointer_TO_r_struct_of_r_binaryANDr_int32END 2023-08-16 15:03:58.186 root: INFO: instruction count: 4: __C1279Compiled.__m2999ENCODE_SInt32$_TO_r_int32 2023-08-16 15:03:58.186 root: INFO: instruction count: 39: __C1279Compiled.__m3000ENCODE_SIndexablePointer_TO_o_array_of_r_binary 2023-08-16 15:03:58.186 root: INFO: instruction count: 4: __C1279Compiled.__m3001ENCODE_SBoolean$_TO_r_bool 2023-08-16 15:03:58.186 root: INFO: instruction count: 39: __C1279Compiled.__m3002ENCODE_SIndexablePointer_TO_r_array_of_r_int32 2023-08-16 15:03:58.186 root: INFO: instruction count: 32: __C1279Compiled.__m3003ENCODE_SBaseStructPointer_TO_r_struct_of_o_struct_of_o_struct_of_r_array_of_o_struct_of_ENDENDANDo_struct_of_r_array_of_o_struct_of_r_array_of_r_int32ENDENDENDEND 2023-08-16 15:03:58.187 root: INFO: instruction count: 51: __C1279Compiled.__m3004ENCODE_SBaseStructPointer_TO_o_struct_of_o_struct_of_r_array_of_o_struct_of_ENDENDANDo_struct_of_r_array_of_o_struct_of_r_array_of_r_int32ENDENDEND 2023-08-16 15:03:58.187 root: INFO: instruction count: 36: __C1279Compiled.__m3005ENCODE_SBaseStructPointer_TO_o_struct_of_r_array_of_o_struct_of_ENDEND 2023-08-16 15:03:58.187 root: INFO: instruction count: 111: __C1279Compiled.__m3006ENCODE_SIndexablePointer_TO_r_array_of_o_struct_of_END 2023-08-16 15:03:58.187 root: INFO: instruction count: 1: __C1279Compiled.__m3007ENCODE_SBaseStructPointer_TO_o_struct_of_END 2023-08-16 15:03:58.187 root: INFO: instruction count: 36: __C1279Compiled.__m3008ENCODE_SBaseStructPointer_TO_o_struct_of_r_array_of_o_struct_of_r_array_of_r_int32ENDEND 2023-08-16 15:03:58.187 root: INFO: instruction count: 111: __C1279Compiled.__m3009ENCODE_SIndexablePointer_TO_r_array_of_o_struct_of_r_array_of_r_int32END 2023-08-16 15:03:58.187 root: INFO: instruction count: 25: __C1279Compiled.__m3010ENCODE_SBaseStructPointer_TO_o_struct_of_r_array_of_r_int32END 2023-08-16 15:03:58.187 root: INFO: instruction count: 27: __C1279Compiled.__m3013DECODE_r_struct_of_r_struct_of_r_binaryANDr_int64ANDr_boolANDo_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDo_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDENDEND_TO_SBaseStructPointer 2023-08-16 15:03:58.187 root: INFO: instruction count: 102: __C1279Compiled.__m3014INPLACE_DECODE_r_struct_of_r_binaryANDr_int64ANDr_boolANDo_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDANDo_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryENDEND_TO_r_struct_of_r_stringANDr_int64ANDr_boolANDo_struct_of_o_locusANDo_array_of_o_stringENDANDo_struct_of_o_locusANDo_array_of_o_stringENDEND 2023-08-16 15:03:58.187 root: INFO: instruction count: 10: __C1279Compiled.__m3015INPLACE_DECODE_r_int64_TO_r_int64 2023-08-16 15:03:58.187 root: INFO: instruction count: 75: __C1279Compiled.__m3016INPLACE_DECODE_o_struct_of_o_struct_of_r_binaryANDr_int32ENDANDo_array_of_o_binaryEND_TO_o_struct_of_o_locusANDo_array_of_o_stringEND 2023-08-16 15:03:58.188 root: INFO: instruction count: 26: __C1279Compiled.__m3017INPLACE_DECODE_o_struct_of_r_binaryANDr_int32END_TO_o_locus 2023-08-16 15:03:58.188 root: INFO: instruction count: 114: __C1279Compiled.__m3018INPLACE_DECODE_o_array_of_o_binary_TO_o_array_of_o_string 2023-08-16 15:03:58.188 root: INFO: instruction count: 31: __C1279Compiled.__m3019INPLACE_DECODE_o_binary_TO_o_string 2023-08-16 15:03:58.188 root: INFO: instruction count: 5: __C1279Compiled.__m3026split_Begin 2023-08-16 15:03:58.189 root: INFO: instruction count: 437: __C1279Compiled.__m3028begin_group_0 2023-08-16 15:03:58.189 root: INFO: instruction count: 1: __C1279Compiled.__m3032ENCODE_SBaseStructPointer_TO_r_struct_of_END 2023-08-16 15:03:58.189 root: INFO: instruction count: 265: __C1279Compiled.__m3036ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_stru 2023-08-16 15:03:58.189 root: INFO: instruction count: 129: __C1279Compiled.__m3037ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.189 root: INFO: instruction count: 13: __C1279Compiled.__m3038ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryEND 2023-08-16 15:03:58.189 root: INFO: instruction count: 21: __C1279Compiled.__m3039ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.189 root: INFO: instruction count: 33: __C1279Compiled.__m3040ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.190 root: INFO: instruction count: 33: __C1279Compiled.__m3041ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.190 root: INFO: instruction count: 39: __C1279Compiled.__m3042ENCODE_SIndexablePointer_TO_r_array_of_r_binary 2023-08-16 15:03:58.190 root: INFO: instruction count: 49: __C1279Compiled.__m3043ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.190 root: INFO: instruction count: 21: __C1279Compiled.__m3044ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.190 root: INFO: instruction count: 17: __C1279Compiled.__m3045ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.190 root: INFO: instruction count: 97: __C1279Compiled.__m3046ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_ 2023-08-16 15:03:58.190 root: INFO: instruction count: 21: __C1279Compiled.__m3047ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.190 root: INFO: instruction count: 65: __C1279Compiled.__m3048ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.190 root: INFO: instruction count: 21: __C1279Compiled.__m3049ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.190 root: INFO: instruction count: 97: __C1279Compiled.__m3050ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.190 root: INFO: instruction count: 21: __C1279Compiled.__m3051ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.190 root: INFO: instruction count: 97: __C1279Compiled.__m3052ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 21: __C1279Compiled.__m3053ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 97: __C1279Compiled.__m3054ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 17: __C1279Compiled.__m3055ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 13: __C1279Compiled.__m3056ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 65: __C1279Compiled.__m3057ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 21: __C1279Compiled.__m3058ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 33: __C1279Compiled.__m3059ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 21: __C1279Compiled.__m3060ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 17: __C1279Compiled.__m3061ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 21: __C1279Compiled.__m3062ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 41: __C1279Compiled.__m3063ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 21: __C1279Compiled.__m3064ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 81: __C1279Compiled.__m3065ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.191 root: INFO: instruction count: 21: __C1279Compiled.__m3066ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.192 root: INFO: instruction count: 17: __C1279Compiled.__m3067ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.192 root: INFO: instruction count: 21: __C1279Compiled.__m3068ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.192 root: INFO: instruction count: 25: __C1279Compiled.__m3069ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.192 root: INFO: instruction count: 29: __C1279Compiled.__m3070ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ENDANDr_float64END 2023-08-16 15:03:58.192 root: INFO: instruction count: 49: __C1279Compiled.__m3071ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:58.192 root: INFO: instruction count: 4: __C1279Compiled.__m3072ENCODE_SFloat64$_TO_r_float64 2023-08-16 15:03:58.192 root: INFO: instruction count: 37: __C1279Compiled.__m3073ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:58.192 root: INFO: instruction count: 25: __C1279Compiled.__m3074ENCODE_SBaseStructPointer_TO_r_struct_of_r_int32ANDr_float64END 2023-08-16 15:03:58.192 root: INFO: instruction count: 97: __C1279Compiled.__m3075ENCODE_SBaseStructPointer_TO_r_struct_of_r_int32ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:58.192 root: INFO: instruction count: 41: __C1279Compiled.__m3076ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDENDANDr_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_flo 2023-08-16 15:03:58.192 root: INFO: instruction count: 73: __C1279Compiled.__m3077ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDANDr_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32ENDEND 2023-08-16 15:03:58.192 root: INFO: instruction count: 169: __C1279Compiled.__m3078ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_array_of_r_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_float64ANDr_int32END 2023-08-16 15:03:58.193 root: INFO: instruction count: 39: __C1279Compiled.__m3079ENCODE_SIndexablePointer_TO_r_array_of_r_float64 2023-08-16 15:03:58.193 root: INFO: instruction count: 73: __C1279Compiled.__m3080ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64ENDEND 2023-08-16 15:03:58.193 root: INFO: instruction count: 49: __C1279Compiled.__m3081ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64ANDr_float64ANDr_float64END 2023-08-16 15:03:58.193 root: INFO: instruction count: 73: __C1279Compiled.__m3082ENCODE_SBaseStructPointer_TO_r_struct_of_r_array_of_r_float64ANDr_array_of_r_int32ANDr_int32ANDr_int32END 2023-08-16 15:03:58.193 root: INFO: instruction count: 209: __C1279Compiled.__m3083ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_stru 2023-08-16 15:03:58.193 root: INFO: instruction count: 21: __C1279Compiled.__m3084ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.193 root: INFO: instruction count: 33: __C1279Compiled.__m3085ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.193 root: INFO: instruction count: 21: __C1279Compiled.__m3086ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.193 root: INFO: instruction count: 49: __C1279Compiled.__m3087ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.193 root: INFO: instruction count: 21: __C1279Compiled.__m3088ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.193 root: INFO: instruction count: 17: __C1279Compiled.__m3089ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.193 root: INFO: instruction count: 21: __C1279Compiled.__m3090ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 41: __C1279Compiled.__m3091ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDANDr_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 21: __C1279Compiled.__m3092ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 21: __C1279Compiled.__m3093ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 193: __C1279Compiled.__m3094ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 21: __C1279Compiled.__m3095ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 33: __C1279Compiled.__m3096ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 21: __C1279Compiled.__m3097ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 17: __C1279Compiled.__m3098ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 21: __C1279Compiled.__m3099ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 25: __C1279Compiled.__m3100ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 9: __C1279Compiled.__m3101ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 25: __C1279Compiled.__m3102ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 21: __C1279Compiled.__m3103ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 17: __C1279Compiled.__m3104ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 9: __C1279Compiled.__m3105ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 25: __C1279Compiled.__m3106ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.194 root: INFO: instruction count: 9: __C1279Compiled.__m3107ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDENDEND 2023-08-16 15:03:58.195 root: INFO: instruction count: 17: __C1279Compiled.__m3108ENCODE_SBaseStructPointer_TO_r_struct_of_r_struct_of_r_binaryENDANDr_struct_of_r_binaryENDEND 2023-08-16 15:03:58.195 root: INFO: instruction count: 51: __C1279Compiled.__m3109ENCODE_SIndexablePointer_TO_r_array_of_r_array_of_r_struct_of_r_binaryANDr_binaryEND 2023-08-16 15:03:58.195 root: INFO: instruction count: 35: __C1279Compiled.__m3110ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_binaryANDr_binaryEND 2023-08-16 15:03:58.195 root: INFO: instruction count: 25: __C1279Compiled.__m3111ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_binaryEND 2023-08-16 15:03:58.195 root: INFO: instruction count: 35: __C1279Compiled.__m3112ENCODE_SIndexablePointer_TO_r_array_of_r_struct_of_r_binaryANDr_int32END 2023-08-16 15:03:58.195 root: INFO: instruction count: 25: __C1279Compiled.__m3113ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_int32END 2023-08-16 15:03:58.195 root: INFO: instruction count: 89: __C1279Compiled.__m3114ENCODE_SBaseStructPointer_TO_r_struct_of_r_binaryANDr_binaryANDr_struct_of_r_float64ANDr_float64ENDANDr_struct_of_r_float64ANDr_float64ENDANDr_array_of_r_binaryANDr_array_of_r_binaryEND 2023-08-16 15:03:58.195 root: INFO: instruction count: 25: __C1279Compiled.__m3115ENCODE_SBaseStructPointer_TO_r_struct_of_r_float64ANDr_float64END 2023-08-16 15:03:58.195 root: INFO: instruction count: 39: __C1279Compiled.__m3116ENCODE_SIndexablePointer_TO_r_array_of_r_binary 2023-08-16 15:03:58.196 root: INFO: instruction count: 143: __C1279Compiled.__m3120split_ToArray 2023-08-16 15:03:58.196 root: INFO: instruction count: 145: __C1279Compiled.__m3134begin_group_0 2023-08-16 15:03:58.196 root: INFO: instruction count: 229: __C1279Compiled.__m3135split_ToArray 2023-08-16 15:03:58.196 root: INFO: instruction count: 302: __C1279Compiled.__m3149begin_group_0 2023-08-16 15:03:58.196 root: INFO: instruction count: 18: __C1279Compiled.__m3150ord_equiv 2023-08-16 15:03:58.197 root: INFO: instruction count: 336: __C1279Compiled.__m3151ord_equivNonnull 2023-08-16 15:03:58.197 root: INFO: instruction count: 34: __C1279Compiled.__m3152ord_equiv 2023-08-16 15:03:58.197 root: INFO: instruction count: 25: __C1279Compiled.__m3153ord_equivNonnull 2023-08-16 15:03:58.197 root: INFO: instruction count: 74: __C1279Compiled.__m3154ord_compareNonnull 2023-08-16 15:03:58.197 root: INFO: instruction count: 34: __C1279Compiled.__m3155ord_equiv 2023-08-16 15:03:58.197 root: INFO: instruction count: 187: __C1279Compiled.__m3156ord_equivNonnull 2023-08-16 15:03:58.197 root: INFO: instruction count: 186: __C1279Compiled.__m3157split_ToArray 2023-08-16 15:03:58.197 root: INFO: instruction count: 143: __C1279Compiled.__m3168split_ToArray 2023-08-16 15:03:58.197 root: INFO: instruction count: 9: __C1279Compiled.setPartitionIndex 2023-08-16 15:03:58.197 root: INFO: instruction count: 4: __C1279Compiled.addPartitionRegion 2023-08-16 15:03:58.197 root: INFO: instruction count: 4: __C1279Compiled.setPool 2023-08-16 15:03:58.197 root: INFO: instruction count: 3: __C1279Compiled.addHailClassLoader 2023-08-16 15:03:58.197 root: INFO: instruction count: 3: __C1279Compiled.addFS 2023-08-16 15:03:58.198 root: INFO: instruction count: 43: __C1279Compiled.addReferenceGenomes 2023-08-16 15:03:58.198 root: INFO: instruction count: 3: __C1279Compiled.setObjects 2023-08-16 15:03:58.198 root: INFO: instruction count: 222: __C1279Compiled.addLiterals 2023-08-16 15:03:58.198 root: INFO: instruction count: 108: __C1279Compiled.__m3182DECODE_r_struct_of_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDENDANDr_struct_of_ENDANDr_array_of_r_array_of_r_int32ANDr_array_of_r_struct_of_r_int64ANDr_boolANDr_struct_of_ENDANDr_struct_of_ENDENDANDr_struct_of_r_int64ANDr_binaryENDANDr_array_of_r_array_of_r_int32ANDr_struct_of_r_int64ANDr_binaryENDANDr_array_of_r_binaryANDr_binaryANDr_array_of_r_struct_of_r_binaryANDr_binaryENDEND_TO_SBaseStructPointer 2023-08-16 15:03:58.198 root: INFO: instruction count: 58: __C1279Compiled.__m3183INPLACE_DECODE_r_array_of_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND_TO_r_array_of_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDEND 2023-08-16 15:03:58.198 root: INFO: instruction count: 53: __C1279Compiled.__m3184INPLACE_DECODE_r_struct_of_r_int64ANDr_binaryANDr_binaryANDr_binaryANDr_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolENDEND_TO_r_struct_of_r_int64ANDr_stringANDr_stringANDr_stringANDr_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32ENDEND 2023-08-16 15:03:58.198 root: INFO: instruction count: 44: __C1279Compiled.__m3185INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32ENDANDr_boolANDr_boolEND_TO_r_interval_of_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32END 2023-08-16 15:03:58.198 root: INFO: instruction count: 26: __C1279Compiled.__m3186INPLACE_DECODE_r_struct_of_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryENDANDr_int32END_TO_r_tuple_of_r_struct_of_r_locusANDo_array_of_r_stringENDANDr_int32END 2023-08-16 15:03:58.198 root: INFO: instruction count: 57: __C1279Compiled.__m3187INPLACE_DECODE_r_struct_of_r_struct_of_r_binaryANDr_int32ENDANDo_array_of_r_binaryEND_TO_r_struct_of_r_locusANDo_array_of_r_stringEND 2023-08-16 15:03:58.198 root: INFO: instruction count: 26: __C1279Compiled.__m3188INPLACE_DECODE_r_struct_of_r_binaryANDr_int32END_TO_r_locus 2023-08-16 15:03:58.198 root: INFO: instruction count: 58: __C1279Compiled.__m3189INPLACE_DECODE_o_array_of_r_binary_TO_o_array_of_r_string 2023-08-16 15:03:58.198 root: INFO: instruction count: 8: __C1279Compiled.__m3190INPLACE_DECODE_r_struct_of_END_TO_r_struct_of_END 2023-08-16 15:03:58.198 root: INFO: instruction count: 58: __C1279Compiled.__m3191INPLACE_DECODE_r_array_of_r_array_of_r_int32_TO_r_array_of_r_array_of_r_int32 2023-08-16 15:03:58.198 root: INFO: instruction count: 58: __C1279Compiled.__m3192INPLACE_DECODE_r_array_of_r_struct_of_r_int64ANDr_boolANDr_struct_of_ENDANDr_struct_of_ENDEND_TO_r_array_of_r_struct_of_r_int64ANDr_boolANDr_struct_of_ENDANDr_struct_of_ENDEND 2023-08-16 15:03:58.198 root: INFO: instruction count: 44: __C1279Compiled.__m3193INPLACE_DECODE_r_struct_of_r_int64ANDr_boolANDr_struct_of_ENDANDr_struct_of_ENDEND_TO_r_struct_of_r_int64ANDr_boolANDr_struct_of_ENDANDr_struct_of_ENDEND 2023-08-16 15:03:58.198 root: INFO: instruction count: 26: __C1279Compiled.__m3194INPLACE_DECODE_r_struct_of_r_int64ANDr_binaryEND_TO_r_struct_of_r_int64ANDr_stringEND 2023-08-16 15:03:58.199 root: INFO: instruction count: 58: __C1279Compiled.__m3195INPLACE_DECODE_r_array_of_r_struct_of_r_binaryANDr_binaryEND_TO_r_array_of_r_struct_of_r_stringANDr_stringEND 2023-08-16 15:03:58.199 root: INFO: instruction count: 26: __C1279Compiled.__m3196INPLACE_DECODE_r_struct_of_r_binaryANDr_binaryEND_TO_r_struct_of_r_stringANDr_stringEND 2023-08-16 15:03:58.199 root: INFO: instruction count: 517: __C1279Compiled.__m1281split_ToArray_region28_28 2023-08-16 15:03:58.199 root: INFO: instruction count: 526: __C1279Compiled.__m1281split_ToArray_region29_29 2023-08-16 15:03:58.199 root: INFO: instruction count: 521: __C1279Compiled.__m1281split_ToArray_region31_31 2023-08-16 15:03:58.200 root: INFO: instruction count: 528: __C1279Compiled.__m1281split_ToArray_region33_33 2023-08-16 15:03:58.200 root: INFO: instruction count: 523: __C1279Compiled.__m1281split_ToArray_region35_35 2023-08-16 15:03:58.201 root: INFO: instruction count: 515: __C1279Compiled.__m1281split_ToArray_region37_37 2023-08-16 15:03:58.201 root: INFO: instruction count: 518: __C1279Compiled.__m1281split_ToArray_region39_39 2023-08-16 15:03:58.201 root: INFO: instruction count: 515: __C1279Compiled.__m1281split_ToArray_region41_41 2023-08-16 15:03:58.201 root: INFO: instruction count: 518: __C1279Compiled.__m1281split_ToArray_region43_43 2023-08-16 15:03:58.202 root: INFO: instruction count: 525: __C1279Compiled.__m1281split_ToArray_region45_45 2023-08-16 15:03:58.202 root: INFO: instruction count: 514: __C1279Compiled.__m1281split_ToArray_region47_47 2023-08-16 15:03:58.202 root: INFO: instruction count: 515: __C1279Compiled.__m1281split_ToArray_region49_49 2023-08-16 15:03:58.202 root: INFO: instruction count: 511: __C1279Compiled.__m1281split_ToArray_region51_51 2023-08-16 15:03:58.203 root: INFO: instruction count: 514: __C1279Compiled.__m1281split_ToArray_region53_53 2023-08-16 15:03:58.203 root: INFO: instruction count: 516: __C1279Compiled.__m1281split_ToArray_region55_55 2023-08-16 15:03:58.203 root: INFO: instruction count: 513: __C1279Compiled.__m1281split_ToArray_region57_57 2023-08-16 15:03:58.203 root: INFO: instruction count: 519: __C1279Compiled.__m1281split_ToArray_region59_59 2023-08-16 15:03:58.204 root: INFO: instruction count: 524: __C1279Compiled.__m1281split_ToArray_region61_61 2023-08-16 15:03:58.204 root: INFO: instruction count: 518: __C1279Compiled.__m1281split_ToArray_region63_63 2023-08-16 15:03:58.204 root: INFO: instruction count: 518: __C1279Compiled.__m1281split_ToArray_region65_65 2023-08-16 15:03:58.205 root: INFO: instruction count: 517: __C1279Compiled.__m1281split_ToArray_region67_67 2023-08-16 15:03:58.205 root: INFO: instruction count: 513: __C1279Compiled.__m1281split_ToArray_region69_69 2023-08-16 15:03:58.205 root: INFO: instruction count: 512: __C1279Compiled.__m1281split_ToArray_region71_71 2023-08-16 15:03:58.205 root: INFO: instruction count: 524: __C1279Compiled.__m1281split_ToArray_region73_73 2023-08-16 15:03:58.206 root: INFO: instruction count: 521: __C1279Compiled.__m1281split_ToArray_region75_75 2023-08-16 15:03:58.206 root: INFO: instruction count: 526: __C1279Compiled.__m1281split_ToArray_region77_77 2023-08-16 15:03:58.206 root: INFO: instruction count: 525: __C1279Compiled.__m1281split_ToArray_region79_79 2023-08-16 15:03:58.207 root: INFO: instruction count: 523: __C1279Compiled.__m1281split_ToArray_region81_81 2023-08-16 15:03:58.207 root: INFO: instruction count: 528: __C1279Compiled.__m1281split_ToArray_region83_83 2023-08-16 15:03:58.207 root: INFO: instruction count: 520: __C1279Compiled.__m1281split_ToArray_region85_85 2023-08-16 15:03:58.208 root: INFO: instruction count: 518: __C1279Compiled.__m1281split_ToArray_region87_87 2023-08-16 15:03:58.208 root: INFO: instruction count: 513: __C1279Compiled.__m1281split_ToArray_region89_89 2023-08-16 15:03:58.208 root: INFO: instruction count: 520: __C1279Compiled.__m1281split_ToArray_region91_91 2023-08-16 15:03:58.208 root: INFO: instruction count: 519: __C1279Compiled.__m1281split_ToArray_region93_93 2023-08-16 15:03:58.209 root: INFO: instruction count: 519: __C1279Compiled.__m1281split_ToArray_region23_24 2023-08-16 15:03:58.209 root: INFO: instruction count: 499: __C1279Compiled.__m1281split_ToArray_region92_95 2023-08-16 15:03:58.209 root: INFO: instruction count: 264: __C1279Compiled.__m1281split_ToArray_region104_109 2023-08-16 15:03:58.209 root: INFO: instruction count: 264: __C1279Compiled.__m1281split_ToArray_region96_101 2023-08-16 15:03:58.210 root: INFO: instruction count: 657: __C1279Compiled.__m1281split_ToArray_region6_22 2023-08-16 15:03:58.211 root: INFO: instruction count: 1396: __C1279Compiled.__m1281split_ToArray_region6_132 2023-08-16 15:03:58.211 root: INFO: instruction count: 456: __C1279Compiled.__m1507split_Let_region77_106 2023-08-16 15:03:58.212 root: INFO: instruction count: 271: __C1279Compiled.__m1507split_Let_region36_76 2023-08-16 15:03:58.212 root: INFO: instruction count: 439: __C1279Compiled.__m1562split_CollectDistributedArray_region2_13 2023-08-16 15:03:58.213 root: INFO: instruction count: 567: __C1279Compiled.__m3028begin_group_0_region24_56 2023-08-16 15:03:58.213 root: INFO: instruction count: 410: __C1279Compiled.__m3028begin_group_0_region17_23 2023-08-16 15:03:58.214 root: INFO: instruction count: 3: __C3248__m1281split_ToArraySpills. 2023-08-16 15:03:58.214 root: INFO: instruction count: 3: __C3420__m1507split_LetSpills. 2023-08-16 15:03:58.214 root: INFO: instruction count: 3: __C3443__m1562split_CollectDistributedArraySpills. 2023-08-16 15:03:58.214 root: INFO: instruction count: 3: __C3452__m3028begin_group_0Spills. 2023-08-16 15:03:58.214 root: INFO: instruction count: 3: __C1280RGContainer_GRCh38. 2023-08-16 15:03:58.214 root: INFO: instruction count: 3: __C1280RGContainer_GRCh38. 2023-08-16 15:03:58.214 root: INFO: instruction count: 3: __C3011staticWrapperClass_1. 2023-08-16 15:04:00.399 root: INFO: RegionPool: REPORT_THRESHOLD: 1.1M allocated (576.0K blocks / 528.0K chunks), regions.size = 2, 0 current java objects, thread 16: Thread-4 2023-08-16 15:04:00.813 root: INFO: executing D-Array [matrix_native_writer] with 1 tasks 2023-08-16 15:04:00.814 MemoryStore: INFO: Block broadcast_11 stored as values in memory (estimated size 16.8 KiB, free 22.0 GiB) 2023-08-16 15:04:00.816 MemoryStore: INFO: Block broadcast_11_piece0 stored as bytes in memory (estimated size 16.3 KiB, free 22.0 GiB) 2023-08-16 15:04:00.816 BlockManagerInfo: INFO: Added broadcast_11_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 16.3 KiB, free: 22.0 GiB) 2023-08-16 15:04:00.818 SparkContext: INFO: Created broadcast 11 from broadcast at SparkBackend.scala:342 2023-08-16 15:04:00.821 MemoryStore: INFO: Block broadcast_12 stored as values in memory (estimated size 445.0 KiB, free 22.0 GiB) 2023-08-16 15:04:00.832 MemoryStore: INFO: Block broadcast_12_piece0 stored as bytes in memory (estimated size 33.7 KiB, free 22.0 GiB) 2023-08-16 15:04:00.833 BlockManagerInfo: INFO: Added broadcast_12_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 33.7 KiB, free: 22.0 GiB) 2023-08-16 15:04:00.834 SparkContext: INFO: Created broadcast 12 from broadcast at SparkBackend.scala:342 2023-08-16 15:04:00.883 SparkContext: INFO: Starting job: collect at SparkBackend.scala:355 2023-08-16 15:04:00.884 DAGScheduler: INFO: Got job 1 (collect at SparkBackend.scala:355) with 1 output partitions 2023-08-16 15:04:00.884 DAGScheduler: INFO: Final stage: ResultStage 1 (collect at SparkBackend.scala:355) 2023-08-16 15:04:00.884 DAGScheduler: INFO: Parents of final stage: List() 2023-08-16 15:04:00.884 DAGScheduler: INFO: Missing parents: List() 2023-08-16 15:04:00.886 DAGScheduler: INFO: Submitting ResultStage 1 (SparkBackendComputeRDD[5] at RDD at SparkBackend.scala:758), which has no missing parents 2023-08-16 15:04:00.921 MemoryStore: INFO: Block broadcast_13 stored as values in memory (estimated size 645.8 KiB, free 22.0 GiB) 2023-08-16 15:04:00.926 MemoryStore: INFO: Block broadcast_13_piece0 stored as bytes in memory (estimated size 300.1 KiB, free 22.0 GiB) 2023-08-16 15:04:00.927 BlockManagerInfo: INFO: Added broadcast_13_piece0 in memory on all-of-us-56-m.c.terra-vpc-sc-8f5cdfd2.internal:33177 (size: 300.1 KiB, free: 22.0 GiB) 2023-08-16 15:04:00.927 SparkContext: INFO: Created broadcast 13 from broadcast at DAGScheduler.scala:1433 2023-08-16 15:04:00.928 DAGScheduler: INFO: Submitting 1 missing tasks from ResultStage 1 (SparkBackendComputeRDD[5] at RDD at SparkBackend.scala:758) (first 15 tasks are for partitions Vector(0)) 2023-08-16 15:04:00.928 YarnScheduler: INFO: Adding task set 1.0 with 1 tasks resource profile 0 2023-08-16 15:04:00.929 FairSchedulableBuilder: INFO: Added task set TaskSet_1.0 tasks to pool default 2023-08-16 15:04:00.931 TaskSetManager: INFO: Starting task 0.0 in stage 1.0 (TID 1) (all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal, executor 2, partition 0, PROCESS_LOCAL, 6577 bytes) taskResourceAssignments Map() 2023-08-16 15:04:01.433 BlockManagerInfo: INFO: Added broadcast_13_piece0 in memory on all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal:41599 (size: 300.1 KiB, free: 5.2 GiB) 2023-08-16 15:04:03.288 BlockManagerInfo: INFO: Added broadcast_12_piece0 in memory on all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal:41599 (size: 33.7 KiB, free: 5.2 GiB) 2023-08-16 15:04:03.455 BlockManagerInfo: INFO: Added broadcast_11_piece0 in memory on all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal:41599 (size: 16.3 KiB, free: 5.2 GiB) 2023-08-16 15:04:03.566 BlockManagerInfo: INFO: Added broadcast_9_piece0 in memory on all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal:41599 (size: 113.0 B, free: 5.2 GiB) 2023-08-16 15:04:37.157 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Disabling executor 2. 2023-08-16 15:04:37.163 DAGScheduler: INFO: Executor lost: 2 (epoch 0) 2023-08-16 15:04:37.164 BlockManagerMasterEndpoint: INFO: Trying to remove executor 2 from BlockManagerMaster. 2023-08-16 15:04:37.165 BlockManagerMasterEndpoint: INFO: Removing block manager BlockManagerId(2, all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal, 41599, None) 2023-08-16 15:04:37.166 BlockManagerMaster: INFO: Removed 2 successfully in removeExecutor 2023-08-16 15:04:38.584 YarnAllocator: INFO: Completed container container_1692197867257_0001_01_000002 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal (state: COMPLETE, exit status: 137) 2023-08-16 15:04:38.585 YarnAllocator: WARN: Container from a bad node: container_1692197867257_0001_01_000002 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:04:37.726]Container killed on request. Exit code is 137 [2023-08-16 15:04:37.771]Container exited with a non-zero exit code 137. [2023-08-16 15:04:37.807]Killed by external signal . 2023-08-16 15:04:38.588 YarnSchedulerBackend$YarnSchedulerEndpoint: WARN: Requesting driver to remove executor 2 for reason Container from a bad node: container_1692197867257_0001_01_000002 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:04:37.726]Container killed on request. Exit code is 137 [2023-08-16 15:04:37.771]Container exited with a non-zero exit code 137. [2023-08-16 15:04:37.807]Killed by external signal . 2023-08-16 15:04:38.590 YarnScheduler: ERROR: Lost executor 2 on all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal: Container from a bad node: container_1692197867257_0001_01_000002 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:04:37.726]Container killed on request. Exit code is 137 [2023-08-16 15:04:37.771]Container exited with a non-zero exit code 137. [2023-08-16 15:04:37.807]Killed by external signal . 2023-08-16 15:04:38.593 TaskSetManager: WARN: Lost task 0.0 in stage 1.0 (TID 1) (all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal executor 2): ExecutorLostFailure (executor 2 exited caused by one of the running tasks) Reason: Container from a bad node: container_1692197867257_0001_01_000002 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:04:37.726]Container killed on request. Exit code is 137 [2023-08-16 15:04:37.771]Container exited with a non-zero exit code 137. [2023-08-16 15:04:37.807]Killed by external signal . 2023-08-16 15:04:38.594 BlockManagerMasterEndpoint: INFO: Trying to remove executor 2 from BlockManagerMaster. 2023-08-16 15:04:38.594 BlockManagerMaster: INFO: Removal of executor 2 requested 2023-08-16 15:04:38.596 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Asked to remove non-existent executor 2 2023-08-16 15:04:39.454 TaskSetManager: INFO: Starting task 0.1 in stage 1.0 (TID 2) (all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal, executor 1, partition 0, PROCESS_LOCAL, 6577 bytes) taskResourceAssignments Map() 2023-08-16 15:04:39.499 BlockManagerInfo: INFO: Added broadcast_13_piece0 in memory on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal:39013 (size: 300.1 KiB, free: 5.2 GiB) 2023-08-16 15:04:39.859 BlockManagerInfo: INFO: Added broadcast_12_piece0 in memory on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal:39013 (size: 33.7 KiB, free: 5.2 GiB) 2023-08-16 15:04:39.900 BlockManagerInfo: INFO: Added broadcast_11_piece0 in memory on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal:39013 (size: 16.3 KiB, free: 5.2 GiB) 2023-08-16 15:04:39.952 BlockManagerInfo: INFO: Added broadcast_9_piece0 in memory on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal:39013 (size: 113.0 B, free: 5.2 GiB) 2023-08-16 15:05:11.597 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Disabling executor 1. 2023-08-16 15:05:11.602 DAGScheduler: INFO: Executor lost: 1 (epoch 0) 2023-08-16 15:05:11.602 BlockManagerMasterEndpoint: INFO: Trying to remove executor 1 from BlockManagerMaster. 2023-08-16 15:05:11.603 BlockManagerMasterEndpoint: INFO: Removing block manager BlockManagerId(1, all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal, 39013, None) 2023-08-16 15:05:11.603 BlockManagerMaster: INFO: Removed 1 successfully in removeExecutor 2023-08-16 15:05:13.014 YarnAllocator: INFO: Completed container container_1692197867257_0001_01_000001 on host: all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal (state: COMPLETE, exit status: 137) 2023-08-16 15:05:13.014 YarnAllocator: WARN: Container from a bad node: container_1692197867257_0001_01_000001 on host: all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:05:12.294]Container killed on request. Exit code is 137 [2023-08-16 15:05:12.320]Container exited with a non-zero exit code 137. [2023-08-16 15:05:12.410]Killed by external signal . 2023-08-16 15:05:13.014 YarnSchedulerBackend$YarnSchedulerEndpoint: WARN: Requesting driver to remove executor 1 for reason Container from a bad node: container_1692197867257_0001_01_000001 on host: all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:05:12.294]Container killed on request. Exit code is 137 [2023-08-16 15:05:12.320]Container exited with a non-zero exit code 137. [2023-08-16 15:05:12.410]Killed by external signal . 2023-08-16 15:05:13.014 YarnScheduler: ERROR: Lost executor 1 on all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal: Container from a bad node: container_1692197867257_0001_01_000001 on host: all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:05:12.294]Container killed on request. Exit code is 137 [2023-08-16 15:05:12.320]Container exited with a non-zero exit code 137. [2023-08-16 15:05:12.410]Killed by external signal . 2023-08-16 15:05:13.015 TaskSetManager: WARN: Lost task 0.1 in stage 1.0 (TID 2) (all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal executor 1): ExecutorLostFailure (executor 1 exited caused by one of the running tasks) Reason: Container from a bad node: container_1692197867257_0001_01_000001 on host: all-of-us-56-sw-zgx5.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:05:12.294]Container killed on request. Exit code is 137 [2023-08-16 15:05:12.320]Container exited with a non-zero exit code 137. [2023-08-16 15:05:12.410]Killed by external signal . 2023-08-16 15:05:13.015 BlockManagerMasterEndpoint: INFO: Trying to remove executor 1 from BlockManagerMaster. 2023-08-16 15:05:13.015 BlockManagerMaster: INFO: Removal of executor 1 requested 2023-08-16 15:05:13.016 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Asked to remove non-existent executor 1 2023-08-16 15:05:16.015 YarnAllocator: INFO: Will request 1 executor container(s) for ResourceProfile Id: 0, each with 2 core(s) and 11380 MB memory. with custom resources: 2023-08-16 15:05:16.016 YarnAllocator: INFO: Submitted 1 unlocalized container requests. 2023-08-16 15:05:16.230 YarnAllocator: INFO: Launching container container_1692197867257_0001_01_000003 on host all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal for executor with ID 3 for ResourceProfile Id 0 2023-08-16 15:05:16.231 YarnAllocator: INFO: Received 1 containers from YARN, launching executors on 1 of them. 2023-08-16 15:05:36.856 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.72:52202) with ID 3, ResourceProfileId 0 2023-08-16 15:05:36.857 ExecutorMonitor: INFO: New executor 3 has registered (new total is 2) 2023-08-16 15:05:37.026 BlockManagerMasterEndpoint: INFO: Registering block manager all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal:33477 with 5.2 GiB RAM, BlockManagerId(3, all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal, 33477, None) 2023-08-16 15:05:37.387 TaskSetManager: INFO: Starting task 0.2 in stage 1.0 (TID 3) (all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal, executor 3, partition 0, PROCESS_LOCAL, 6577 bytes) taskResourceAssignments Map() 2023-08-16 15:05:37.688 BlockManagerInfo: INFO: Added broadcast_13_piece0 in memory on all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal:33477 (size: 300.1 KiB, free: 5.2 GiB) 2023-08-16 15:05:39.892 BlockManagerInfo: INFO: Added broadcast_12_piece0 in memory on all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal:33477 (size: 33.7 KiB, free: 5.2 GiB) 2023-08-16 15:05:39.993 BlockManagerInfo: INFO: Added broadcast_11_piece0 in memory on all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal:33477 (size: 16.3 KiB, free: 5.2 GiB) 2023-08-16 15:05:40.097 BlockManagerInfo: INFO: Added broadcast_9_piece0 in memory on all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal:33477 (size: 113.0 B, free: 5.2 GiB) 2023-08-16 15:06:14.619 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Disabling executor 3. 2023-08-16 15:06:14.620 DAGScheduler: INFO: Executor lost: 3 (epoch 0) 2023-08-16 15:06:14.620 BlockManagerMasterEndpoint: INFO: Trying to remove executor 3 from BlockManagerMaster. 2023-08-16 15:06:14.620 BlockManagerMasterEndpoint: INFO: Removing block manager BlockManagerId(3, all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal, 33477, None) 2023-08-16 15:06:14.620 BlockManagerMaster: INFO: Removed 3 successfully in removeExecutor 2023-08-16 15:06:16.030 YarnAllocator: INFO: Completed container container_1692197867257_0001_01_000003 on host: all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal (state: COMPLETE, exit status: 137) 2023-08-16 15:06:16.030 YarnAllocator: WARN: Container from a bad node: container_1692197867257_0001_01_000003 on host: all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:06:15.508]Container killed on request. Exit code is 137 [2023-08-16 15:06:15.535]Container exited with a non-zero exit code 137. [2023-08-16 15:06:15.631]Killed by external signal . 2023-08-16 15:06:16.031 YarnSchedulerBackend$YarnSchedulerEndpoint: WARN: Requesting driver to remove executor 3 for reason Container from a bad node: container_1692197867257_0001_01_000003 on host: all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:06:15.508]Container killed on request. Exit code is 137 [2023-08-16 15:06:15.535]Container exited with a non-zero exit code 137. [2023-08-16 15:06:15.631]Killed by external signal . 2023-08-16 15:06:16.031 YarnScheduler: ERROR: Lost executor 3 on all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal: Container from a bad node: container_1692197867257_0001_01_000003 on host: all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:06:15.508]Container killed on request. Exit code is 137 [2023-08-16 15:06:15.535]Container exited with a non-zero exit code 137. [2023-08-16 15:06:15.631]Killed by external signal . 2023-08-16 15:06:16.031 TaskSetManager: WARN: Lost task 0.2 in stage 1.0 (TID 3) (all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal executor 3): ExecutorLostFailure (executor 3 exited caused by one of the running tasks) Reason: Container from a bad node: container_1692197867257_0001_01_000003 on host: all-of-us-56-sw-rv8b.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:06:15.508]Container killed on request. Exit code is 137 [2023-08-16 15:06:15.535]Container exited with a non-zero exit code 137. [2023-08-16 15:06:15.631]Killed by external signal . 2023-08-16 15:06:16.032 BlockManagerMasterEndpoint: INFO: Trying to remove executor 3 from BlockManagerMaster. 2023-08-16 15:06:16.032 BlockManagerMaster: INFO: Removal of executor 3 requested 2023-08-16 15:06:16.032 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Asked to remove non-existent executor 3 2023-08-16 15:06:19.031 YarnAllocator: INFO: Will request 1 executor container(s) for ResourceProfile Id: 0, each with 2 core(s) and 11380 MB memory. with custom resources: 2023-08-16 15:06:19.032 YarnAllocator: INFO: Submitted 1 unlocalized container requests. 2023-08-16 15:06:19.247 YarnAllocator: INFO: Launching container container_1692197867257_0001_01_000004 on host all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal for executor with ID 4 for ResourceProfile Id 0 2023-08-16 15:06:19.248 YarnAllocator: INFO: Received 1 containers from YARN, launching executors on 1 of them. 2023-08-16 15:06:31.992 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.81:51632) with ID 4, ResourceProfileId 0 2023-08-16 15:06:31.992 ExecutorMonitor: INFO: New executor 4 has registered (new total is 2) 2023-08-16 15:06:32.077 BlockManagerMasterEndpoint: INFO: Registering block manager all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal:45495 with 5.2 GiB RAM, BlockManagerId(4, all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal, 45495, None) 2023-08-16 15:06:32.173 TaskSetManager: INFO: Starting task 0.3 in stage 1.0 (TID 4) (all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal, executor 4, partition 0, PROCESS_LOCAL, 6577 bytes) taskResourceAssignments Map() 2023-08-16 15:06:32.495 BlockManagerInfo: INFO: Added broadcast_13_piece0 in memory on all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal:45495 (size: 300.1 KiB, free: 5.2 GiB) 2023-08-16 15:06:34.315 BlockManagerInfo: INFO: Added broadcast_12_piece0 in memory on all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal:45495 (size: 33.7 KiB, free: 5.2 GiB) 2023-08-16 15:06:34.477 BlockManagerInfo: INFO: Added broadcast_11_piece0 in memory on all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal:45495 (size: 16.3 KiB, free: 5.2 GiB) 2023-08-16 15:06:35.033 BlockManagerInfo: INFO: Added broadcast_9_piece0 in memory on all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal:45495 (size: 113.0 B, free: 5.2 GiB) 2023-08-16 15:07:08.290 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Disabling executor 4. 2023-08-16 15:07:08.290 DAGScheduler: INFO: Executor lost: 4 (epoch 0) 2023-08-16 15:07:08.290 BlockManagerMasterEndpoint: INFO: Trying to remove executor 4 from BlockManagerMaster. 2023-08-16 15:07:08.291 BlockManagerMasterEndpoint: INFO: Removing block manager BlockManagerId(4, all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal, 45495, None) 2023-08-16 15:07:08.291 BlockManagerMaster: INFO: Removed 4 successfully in removeExecutor 2023-08-16 15:07:08.899 YarnAllocator: INFO: Completed container container_1692197867257_0001_01_000004 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal (state: COMPLETE, exit status: 137) 2023-08-16 15:07:08.899 YarnAllocator: WARN: Container from a bad node: container_1692197867257_0001_01_000004 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:07:08.706]Container killed on request. Exit code is 137 [2023-08-16 15:07:08.706]Container exited with a non-zero exit code 137. [2023-08-16 15:07:08.707]Killed by external signal . 2023-08-16 15:07:08.900 YarnSchedulerBackend$YarnSchedulerEndpoint: WARN: Requesting driver to remove executor 4 for reason Container from a bad node: container_1692197867257_0001_01_000004 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:07:08.706]Container killed on request. Exit code is 137 [2023-08-16 15:07:08.706]Container exited with a non-zero exit code 137. [2023-08-16 15:07:08.707]Killed by external signal . 2023-08-16 15:07:08.900 YarnScheduler: ERROR: Lost executor 4 on all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal: Container from a bad node: container_1692197867257_0001_01_000004 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:07:08.706]Container killed on request. Exit code is 137 [2023-08-16 15:07:08.706]Container exited with a non-zero exit code 137. [2023-08-16 15:07:08.707]Killed by external signal . 2023-08-16 15:07:08.900 TaskSetManager: WARN: Lost task 0.3 in stage 1.0 (TID 4) (all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal executor 4): ExecutorLostFailure (executor 4 exited caused by one of the running tasks) Reason: Container from a bad node: container_1692197867257_0001_01_000004 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:07:08.706]Container killed on request. Exit code is 137 [2023-08-16 15:07:08.706]Container exited with a non-zero exit code 137. [2023-08-16 15:07:08.707]Killed by external signal . 2023-08-16 15:07:08.901 TaskSetManager: ERROR: Task 0 in stage 1.0 failed 4 times; aborting job 2023-08-16 15:07:08.902 YarnScheduler: INFO: Removed TaskSet 1.0, whose tasks have all completed, from pool default 2023-08-16 15:07:08.903 BlockManagerMaster: INFO: Removal of executor 4 requested 2023-08-16 15:07:08.903 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Asked to remove non-existent executor 4 2023-08-16 15:07:08.903 BlockManagerMasterEndpoint: INFO: Trying to remove executor 4 from BlockManagerMaster. 2023-08-16 15:07:08.905 YarnScheduler: INFO: Cancelling stage 1 2023-08-16 15:07:08.905 YarnScheduler: INFO: Killing all running tasks in stage 1: Stage cancelled 2023-08-16 15:07:08.905 DAGScheduler: INFO: ResultStage 1 (collect at SparkBackend.scala:355) failed in 188.018 s due to Job aborted due to stage failure: Task 0 in stage 1.0 failed 4 times, most recent failure: Lost task 0.3 in stage 1.0 (TID 4) (all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal executor 4): ExecutorLostFailure (executor 4 exited caused by one of the running tasks) Reason: Container from a bad node: container_1692197867257_0001_01_000004 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:07:08.706]Container killed on request. Exit code is 137 [2023-08-16 15:07:08.706]Container exited with a non-zero exit code 137. [2023-08-16 15:07:08.707]Killed by external signal . Driver stacktrace: 2023-08-16 15:07:08.906 DAGScheduler: INFO: Job 1 failed: collect at SparkBackend.scala:355, took 188.022855 s 2023-08-16 15:07:08.907 root: ERROR: error while applying lowering 'LowerOrInterpretNonCompilable' 2023-08-16 15:07:08.908 root: INFO: RegionPool: FREE: 1.3M allocated (704.0K blocks / 656.0K chunks), regions.size = 2, 0 current java objects, thread 16: Thread-4 2023-08-16 15:07:08.910 root: ERROR: SparkException: Job aborted due to stage failure: Task 0 in stage 1.0 failed 4 times, most recent failure: Lost task 0.3 in stage 1.0 (TID 4) (all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal executor 4): ExecutorLostFailure (executor 4 exited caused by one of the running tasks) Reason: Container from a bad node: container_1692197867257_0001_01_000004 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:07:08.706]Container killed on request. Exit code is 137 [2023-08-16 15:07:08.706]Container exited with a non-zero exit code 137. [2023-08-16 15:07:08.707]Killed by external signal . Driver stacktrace: From org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 1.0 failed 4 times, most recent failure: Lost task 0.3 in stage 1.0 (TID 4) (all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal executor 4): ExecutorLostFailure (executor 4 exited caused by one of the running tasks) Reason: Container from a bad node: container_1692197867257_0001_01_000004 on host: all-of-us-56-sw-md17.c.terra-vpc-sc-8f5cdfd2.internal. Exit status: 137. Diagnostics: [2023-08-16 15:07:08.706]Container killed on request. Exit code is 137 [2023-08-16 15:07:08.706]Container exited with a non-zero exit code 137. [2023-08-16 15:07:08.707]Killed by external signal . Driver stacktrace: at org.apache.spark.scheduler.DAGScheduler.failJobAndIndependentStages(DAGScheduler.scala:2304) at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2(DAGScheduler.scala:2253) at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2$adapted(DAGScheduler.scala:2252) at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62) at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55) at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49) at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:2252) at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1(DAGScheduler.scala:1124) at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1$adapted(DAGScheduler.scala:1124) at scala.Option.foreach(Option.scala:407) at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:1124) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2491) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2433) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2422) at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49) at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:902) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2204) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2225) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2244) at org.apache.spark.SparkContext.runJob(SparkContext.scala:2269) at org.apache.spark.rdd.RDD.$anonfun$collect$1(RDD.scala:1030) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112) at org.apache.spark.rdd.RDD.withScope(RDD.scala:414) at org.apache.spark.rdd.RDD.collect(RDD.scala:1029) at is.hail.backend.spark.SparkBackend.parallelizeAndComputeWithIndex(SparkBackend.scala:355) at is.hail.backend.BackendUtils.collectDArray(BackendUtils.scala:43) at __C1279Compiled.__m1562split_CollectDistributedArray(Emit.scala) at __C1279Compiled.__m1507split_Let(Emit.scala) at __C1279Compiled.apply(Emit.scala) at is.hail.expr.ir.CompileAndEvaluate$.$anonfun$_apply$3(CompileAndEvaluate.scala:57) at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23) at is.hail.utils.ExecutionTimer.time(ExecutionTimer.scala:81) at is.hail.expr.ir.CompileAndEvaluate$._apply(CompileAndEvaluate.scala:57) at is.hail.expr.ir.CompileAndEvaluate$.evalToIR(CompileAndEvaluate.scala:30) at is.hail.expr.ir.LowerOrInterpretNonCompilable$.evaluate$1(LowerOrInterpretNonCompilable.scala:30) at is.hail.expr.ir.LowerOrInterpretNonCompilable$.rewrite$1(LowerOrInterpretNonCompilable.scala:67) at is.hail.expr.ir.LowerOrInterpretNonCompilable$.apply(LowerOrInterpretNonCompilable.scala:72) at is.hail.expr.ir.lowering.LowerOrInterpretNonCompilablePass$.transform(LoweringPass.scala:69) at is.hail.expr.ir.lowering.LoweringPass.$anonfun$apply$3(LoweringPass.scala:16) at is.hail.utils.ExecutionTimer.time(ExecutionTimer.scala:81) at is.hail.expr.ir.lowering.LoweringPass.$anonfun$apply$1(LoweringPass.scala:16) at is.hail.utils.ExecutionTimer.time(ExecutionTimer.scala:81) at is.hail.expr.ir.lowering.LoweringPass.apply(LoweringPass.scala:14) at is.hail.expr.ir.lowering.LoweringPass.apply$(LoweringPass.scala:13) at is.hail.expr.ir.lowering.LowerOrInterpretNonCompilablePass$.apply(LoweringPass.scala:64) at is.hail.expr.ir.lowering.LoweringPipeline.$anonfun$apply$1(LoweringPipeline.scala:15) at is.hail.expr.ir.lowering.LoweringPipeline.$anonfun$apply$1$adapted(LoweringPipeline.scala:13) at scala.collection.IndexedSeqOptimized.foreach(IndexedSeqOptimized.scala:36) at scala.collection.IndexedSeqOptimized.foreach$(IndexedSeqOptimized.scala:33) at scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:38) at is.hail.expr.ir.lowering.LoweringPipeline.apply(LoweringPipeline.scala:13) at is.hail.expr.ir.CompileAndEvaluate$._apply(CompileAndEvaluate.scala:47) at is.hail.backend.spark.SparkBackend._execute(SparkBackend.scala:450) at is.hail.backend.spark.SparkBackend.$anonfun$executeEncode$2(SparkBackend.scala:486) at is.hail.backend.ExecuteContext$.$anonfun$scoped$3(ExecuteContext.scala:70) at is.hail.utils.package$.using(package.scala:635) at is.hail.backend.ExecuteContext$.$anonfun$scoped$2(ExecuteContext.scala:70) at is.hail.utils.package$.using(package.scala:635) at is.hail.annotations.RegionPool$.scoped(RegionPool.scala:17) at is.hail.backend.ExecuteContext$.scoped(ExecuteContext.scala:59) at is.hail.backend.spark.SparkBackend.withExecuteContext(SparkBackend.scala:339) at is.hail.backend.spark.SparkBackend.$anonfun$executeEncode$1(SparkBackend.scala:483) at is.hail.utils.ExecutionTimer$.time(ExecutionTimer.scala:52) at is.hail.backend.spark.SparkBackend.executeEncode(SparkBackend.scala:482) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244) at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357) at py4j.Gateway.invoke(Gateway.java:282) at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132) at py4j.commands.CallCommand.execute(CallCommand.java:79) at py4j.GatewayConnection.run(GatewayConnection.java:238) at java.lang.Thread.run(Thread.java:750) 2023-08-16 15:07:11.900 YarnAllocator: INFO: Will request 1 executor container(s) for ResourceProfile Id: 0, each with 2 core(s) and 11380 MB memory. with custom resources: 2023-08-16 15:07:11.901 YarnAllocator: INFO: Submitted 1 unlocalized container requests. 2023-08-16 15:07:12.117 YarnAllocator: INFO: Launching container container_1692197867257_0001_01_000005 on host all-of-us-56-sw-zmk5.c.terra-vpc-sc-8f5cdfd2.internal for executor with ID 5 for ResourceProfile Id 0 2023-08-16 15:07:12.118 YarnAllocator: INFO: Received 1 containers from YARN, launching executors on 1 of them. 2023-08-16 15:07:32.922 YarnSchedulerBackend$YarnDriverEndpoint: INFO: Registered executor NettyRpcEndpointRef(spark-client://Executor) (10.128.0.71:32946) with ID 5, ResourceProfileId 0 2023-08-16 15:07:32.923 ExecutorMonitor: INFO: New executor 5 has registered (new total is 2) 2023-08-16 15:07:33.079 BlockManagerMasterEndpoint: INFO: Registering block manager all-of-us-56-sw-zmk5.c.terra-vpc-sc-8f5cdfd2.internal:34153 with 5.2 GiB RAM, BlockManagerId(5, all-of-us-56-sw-zmk5.c.terra-vpc-sc-8f5cdfd2.internal, 34153, None)