FST Calculation

Dear team,

can we calculate FST based on subpopulation using Hail?
https://www.biostars.org/p/361733/

Regards,

Perhaps applying this model could be helpful to you?
https://hail.is/docs/0.2/methods/genetics.html#hail.methods.balding_nichols_model

You are also welcome to apply Fst computations based on calculating either based on population weighted average frequency or average sample size incorporating variance.

Thanks Kumar !!
I think I didn’t understand properly.
I want to calculated FST for each subgroup wihin population something like vcftools does

Regards,
Najeeb

Dear Kumar,

Could you please help me in writing code chunk for performing this analysis ?

Regards,
Najeeb