Hail Discussion

Topic	Replies	Views	Activity
I cannot access the VEP, Annotation DB, or Datasets API buckets Hail Query & hailctl Due to changes in the price of transferring data from a Google Cloud Storage multi-regional bucket to a regional bucket, we had to move our VEP reference data, Annotation DB datasets, and Datasets API datasets, into regi…	1	331	February 28, 2024
Welcome to the Hail community! Updates	0	4015	August 26, 2016
AssertionError: assertion failed Hail Batch & General Cloud	2	217	July 26, 2024
Cannot Get Sequence Information Hail Query & hailctl	0	1	July 26, 2024
Submit script giving ModuleNotFoundError: No module named ‘gnomad’ Hail Query & hailctl	4	16	July 16, 2024
How to deploy the latest Hail 0.2 on AWS EMR? Hail Query & hailctl	3	384	July 11, 2024
Illegal reflective access Hail Query & hailctl	0	21	July 9, 2024
Annotating VCF from gnomad VCF and merge join tables in general Hail Query & hailctl	3	65	July 9, 2024
MethodTooLargeException when running vds.combiner Hail Query & hailctl	2	55	June 30, 2024
No FileSystem for scheme "gs" Hail Batch & General Cloud	2	90	June 21, 2024
Duplicated Loci error on VDS Combiner Hail Query & hailctl	3	59	June 20, 2024
Pre-VEPed reference table Hail Query & hailctl	0	46	June 18, 2024
Request for Feedback on Hail-Adjacent System Science	2	76	June 17, 2024
Export_vcf very slow Hail Query & hailctl	0	52	June 16, 2024
Pc_rel memory issue: ConnectionRefusedError: [Errno 111] Connection refused Hail Query & hailctl	10	399	June 11, 2024
LineTooLong Error after union_rows Hail Query & hailctl	0	54	June 7, 2024
Accessing intervals and alleles in matrix table Hail Query & hailctl	3	85	June 5, 2024
Trying to recode output from imputed_sex to 0 or 1 Hail Query & hailctl	3	63	May 31, 2024
Isolating Split Variants from VDS Hail Query & hailctl	0	68	May 24, 2024
Shortening MT writing / export_vcf in Variant QC Hail Query & hailctl	0	81	May 23, 2024
Filtering samples from VDS in Google cloud Hail Batch & General Cloud	10	386	May 23, 2024
Hail fails after installing it on a single computer Hail Query & hailctl	6	325	May 23, 2024
Error in load_dataset() Hail Query & hailctl	6	175	May 23, 2024
ConnectionError after mt.aggregate_cols(hl.agg.collect(…)) and hl.nd.array() in _linear_skat Hail Query & hailctl	1	175	May 22, 2024
VDS combiner unsuccesful on large cohort Hail Query & hailctl	2	113	May 22, 2024
Split huge multi-sample VCF Hail Query & hailctl	1	413	May 17, 2024
Question about Ordering unsorted dataset with network shuffle Hail Query & hailctl	0	111	May 16, 2024
Ploidy error when trying to extract X-chromosome snps Hail Query & hailctl	3	95	May 16, 2024
Most efficient way to filter and densify VDS Hail Query & hailctl	4	150	May 14, 2024
Can I create a notebook that continues to run when I close my laptop? Hail Query & hailctl	1	411	November 25, 2020

I cannot access the VEP, Annotation DB, or Datasets API buckets

Due to changes in the price of transferring data from a Google Cloud Storage multi-regional bucket to a regional bucket, we had to move our VEP reference data, Annotation DB datasets, and Datasets API datasets, into regi…