Hail Discussion

Topic	Replies	Views	Activity
I cannot access the VEP, Annotation DB, or Datasets API buckets Hail Query & hailctl Due to changes in the price of transferring data from a Google Cloud Storage multi-regional bucket to a regional bucket, we had to move our VEP reference data, Annotation DB datasets, and Datasets API datasets, into regi…	1	362	February 28, 2024
Welcome to the Hail community! Updates	0	4036	August 26, 2016
Error: is.hail.backend.spark.SparkBackend Hail Query & hailctl	0	1	October 13, 2024
Trouble saving a large MatrixTable Hail Query & hailctl	5	25	October 12, 2024
Identify duplicated sample groups Hail Query & hailctl	2	14	October 11, 2024
Spark Exception when running init() Hail Query & hailctl	9	8	October 9, 2024
Cannot access gnomAD publicly available Hail table Hail Query & hailctl	1	6	October 8, 2024
FatalError: StreamConstraintsException: String length (20019131) exceeds the maximum length (20000000) Hail Query & hailctl	3	31	October 5, 2024
Add AF to regression output Hail Query & hailctl	2	19	October 4, 2024
Subsetting a BGEN file in hail Hail Query & hailctl	1	24	October 4, 2024
Lambda calculation & qq plot for hail Hail Query & hailctl	1	10	October 4, 2024
Cost estimation strategies Hail Batch & General Cloud	0	12	October 3, 2024
Hail hangs in waiting for task executor Hail Query & hailctl	2	13	October 2, 2024
Potential Outdated Error Statement for Hail Version Incompatibility Hail Query & hailctl	6	287	October 1, 2024
Export MT as PLINK2 pgen/pvar/psam Feature Requests	4	17	September 18, 2024
PRS calculation using hail matrix Hail Query & hailctl	0	29	September 13, 2024
Computation speed of hail aggregation Hail Query & hailctl	11	625	September 11, 2024
Working with large VCFs (e.g. from UK Biobank) is slow Hail Query & hailctl	12	1666	August 23, 2024
Using HDFS on EMR Hail Query & hailctl	3	32	August 23, 2024
Extracing sample IDs into a Python List Hail Query & hailctl	0	17	August 8, 2024
Filtering samples from VDS in Google cloud Hail Batch & General Cloud	11	443	August 6, 2024
Hail installation fail at No rule to make target `jni.h' even after setting JAVA_HOME Hail Query & hailctl	0	11	August 1, 2024
How to recode config in a matrix table Hail Query & hailctl	0	18	July 29, 2024
AssertionError: assertion failed Hail Batch & General Cloud	2	227	July 26, 2024
Cannot Get Sequence Information Hail Query & hailctl	0	23	July 26, 2024
Submit script giving ModuleNotFoundError: No module named ‘gnomad’ Hail Query & hailctl	4	26	July 16, 2024
How to deploy the latest Hail 0.2 on AWS EMR? Hail Query & hailctl	3	396	July 11, 2024
Illegal reflective access Hail Query & hailctl	0	30	July 9, 2024
Annotating VCF from gnomad VCF and merge join tables in general Hail Query & hailctl	3	97	July 9, 2024
MethodTooLargeException when running vds.combiner Hail Query & hailctl	2	68	June 30, 2024

I cannot access the VEP, Annotation DB, or Datasets API buckets

Due to changes in the price of transferring data from a Google Cloud Storage multi-regional bucket to a regional bucket, we had to move our VEP reference data, Annotation DB datasets, and Datasets API datasets, into regi…