|
About the Hail Batch & General Cloud category
|
|
0
|
400
|
August 5, 2021
|
|
Importing multiple vcfs from multiple Terra buckets to Hail
|
|
4
|
20
|
October 26, 2026
|
|
ABFS (abfs://) paths with ADLS Gen2 no longer work in Hail 0.2.137 due to filesystem validation – is it expected / supported?
|
|
1
|
93
|
March 11, 2026
|
|
Writing MatrixTable on DNAnexus extremely slow + “server connection failed” at the end
|
|
0
|
84
|
November 26, 2025
|
|
Error running hail 0.2.134-py3.11
|
|
1
|
133
|
October 29, 2025
|
|
Out of memory on hail batch?
|
|
2
|
133
|
June 23, 2025
|
|
Running hail on slurm
|
|
2
|
151
|
May 21, 2025
|
|
Export_plink method uses /tmp instead of tmp_dir
|
|
0
|
61
|
April 26, 2025
|
|
Running Hail using MPI queue
|
|
1
|
82
|
April 8, 2025
|
|
Recovering older version in jupyterlab
|
|
0
|
23
|
February 16, 2025
|
|
LineTooLong Error
|
|
2
|
110
|
January 28, 2025
|
|
[ERROR] An error occurred: HailException: RelationalSetup.writeMetadata: file already exists: output.filtered_data
|
|
0
|
47
|
January 18, 2025
|
|
Cost estimation strategies
|
|
0
|
53
|
October 3, 2024
|
|
Filtering samples from VDS in Google cloud
|
|
11
|
694
|
August 6, 2024
|
|
AssertionError: assertion failed
|
|
2
|
279
|
July 26, 2024
|
|
No FileSystem for scheme "gs"
|
|
2
|
1239
|
June 21, 2024
|
|
Unable to write matrix tables to MinIO S3 storage
|
|
1
|
252
|
March 29, 2024
|
|
Best practices for setting up GCP billing for Hail for the first time
|
|
1
|
260
|
March 21, 2024
|
|
Slow Terra Output
|
|
2
|
229
|
March 11, 2024
|
|
Most efficiently using cloud resources
|
|
3
|
273
|
March 1, 2024
|
|
Incompatibility between Hail and Spark 3.3.2
|
|
2
|
422
|
October 18, 2023
|
|
Error in Terra When Initializing HAIL
|
|
5
|
657
|
October 4, 2023
|
|
Optimal analysis environment for exporting hail table/matrix table to plink or vcf file format
|
|
1
|
446
|
June 21, 2023
|
|
GCP jupyter error
|
|
6
|
772
|
February 8, 2023
|
|
I would like to use my Hail Batch service account with Terra. How do I do that?
|
|
1
|
541
|
January 17, 2023
|
|
Combining VCFs from gnomAD
|
|
3
|
606
|
October 21, 2022
|
|
Getting java heap error tried a bunch of things with the executor and memory settings
|
|
2
|
3571
|
October 5, 2022
|
|
Pip-installed Hail requires additional configuration options in Spark referring to the path to the Hail Python module directory HAIL_DIR
|
|
1
|
693
|
June 3, 2022
|
|
Build hail on cloud
|
|
1
|
480
|
May 28, 2022
|
|
Best archival policy for storing hail matrix tables in aws s3 bucket
|
|
1
|
559
|
May 24, 2022
|