Hi, hope all is well. I’m working on the AllofUs platform to calculate some PRS. I’m using a custom code and Hail MT for calculations, which is working but is time-consuming and expensive. A part of the code is subsetting the variants in the PRS weights df from the MT, and I came across @tpoterba …

'GT' are present in MT but missing from VDS for same samples

danking October 4, 2023, 2:39pm 7

Hey! Sorry for the delay, I answered in your other question How does Hail treat missing calls?

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