Hi, I am trying to import binary plink files and keep getting the error message below. Hail version: 0.2.34-914bd8a10ca2 Error summary: OutOfMemoryError: Java heap space I changed the memory setting using the command below PYSPARK_SUBMIT_ARGS="–driver-memory 60g --executor-memory 60g pyspark-sh…

Import plink - Error summary: OutOfMemoryError: Java heap space

tpoterba March 16, 2020, 11:38am 2

How big are the PLINK files, and what’s the full pipeline? in particular, how many variants?

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