Following make clean, this command gets a little way through
CXXFLAGS='/grid/wsbs/home_norepl/skleeman/Software/LocalInstall/usr/local/include/lz4.h' HAIL_COMPILE_NATIVES=1 make -C hail install-editable
Then I get:
-ggdb -fno-strict-aliasing -I../resources/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.265.b01-0.el8_2.x86_64/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.265.b01-0.el8_2.x86_64/include/linux ApproximateQuantiles_test.cpp -MG -M -MF build/ApproximateQuantiles_test.d -MT build/ApproximateQuantiles_test.o
g++ -o build/NativeBoot.o /grid/wsbs/home_norepl/skleeman/Software/LocalInstall/usr/local/include/lz4.h -march=sandybridge -O3 -std=c++14 -Ilibsimdpp-2.1 -Wall -Wextra -fPIC -ggdb -fno-strict-aliasing -I../resources/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.265.b01-0.el8_2.x86_64/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.265.b01-0.el8_2.x86_64/include/linux -MD -MF build/NativeBoot.d -MT build/NativeBoot.o -c NativeBoot.cpp
**g++:** **fatal error:** cannot specify ‘ **-o** ’ with ‘ **-c** ’, ‘ **-S** ’ or ‘ **-E** ’ with multiple files
compilation terminated.
make[1]: *** [Makefile:65: build/NativeBoot.o] Error 1
make[1]: Leaving directory '/grid/wsbs/home_norepl/skleeman/hail/hail/src/main/c'
make: *** [Makefile:355: native-lib-prebuilt] Error 2
make: Leaving directory '/grid/wsbs/home_norepl/skleeman/hail/hail'