Hello, I am trying to import by vcf file, but I am getting an error whenever I am trying to apply any function to my file. i_dir = '/Users/jeji/ASD_pQTL' vcf_path = '/'.join([i_dir, "SNUBH_ASD_210210.vcf.gz"]) mt = hl.import_vcf(vcf_path, reference_genome = 'GRCh38', force_bgz = True, min_partition…

Unable to utilize my vcf file

johnc1231 December 16, 2021, 5:30pm 3

Can you also share the hail log file with us?

Topic		Replies	Views
FatalError: IllegalArgumentException: requirement failed (Error occured during import_vcf) Hail Query & hailctl	6	755	April 11, 2022
Import VCF from dbSNP Hail Query & hailctl	3	593	August 15, 2022
Joint genotype example vcf file Hail Query & hailctl	10	1209	May 6, 2020
Error on read vcd file:hc.import_vcf Help [0.1]	11	1641	October 28, 2017
Import_vcf() for tutorial data fails Help [0.1]	2	1306	May 3, 2017