Hello, I am trying to import by vcf file, but I am getting an error whenever I am trying to apply any function to my file. i_dir = '/Users/jeji/ASD_pQTL' vcf_path = '/'.join([i_dir, "SNUBH_ASD_210210.vcf.gz"]) mt = hl.import_vcf(vcf_path, reference_genome = 'GRCh38', force_bgz = True, min_partition…

Unable to utilize my vcf file

johnc1231 December 16, 2021, 5:30pm 3

Can you also share the hail log file with us?

Topic		Replies	Views
Import_vcf() for tutorial data fails Help [0.1]	2	1298	May 3, 2017
Error summary: VCFParseError: unexpected end of line Hail Query & hailctl	4	629	May 19, 2020
Problem with hl.import_vcf from google bucket Hail Query & hailctl	5	1008	January 10, 2019
Unable to run Nirvana Locally Hail Query & hailctl	4	615	June 26, 2019
Importing many sample-specific VCFs Hail Query & hailctl	12	1139	December 12, 2022