Hi there, I was trying to run a GWAS using the agg.linreg function. In order to test the code, I modified your GWAS tutorial by changing the hl.linear_regression_rows() to hl.agg.linreg(). However, I encountered the following exception when I ran the code: [Screen Shot 2020-06-29 at 10.50.24 PM] …

Here’s the fix: [query] Fix bug in linreg aggregator when n == 0 hail-is:master ← tpoterba:agg-linreg-requiredness opened 11:32AM - 30 Jun 20 UTC (UTC) [tpoterba] tpoterba …

Use agg.linreg for GWAS

Hail Query & hailctl

tpoterba June 30, 2020, 11:22am 2

This is a Hail bug, thanks for the report. Will fix this morning.

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Use agg.linreg for GWAS

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