Use agg.linreg for GWAS

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#1

Hi there,

I was trying to run a GWAS using the agg.linreg function. In order to test the code, I modified your GWAS tutorial by changing the hl.linear_regression_rows() to hl.agg.linreg(). However, I encountered the following exception when I ran the code:

Screen Shot 2020-06-29 at 10.50.24 PM
Screen Shot 2020-06-29 at 10.50.24 PM2880×862 321 KB

May I ask what’s going on here? I couldn’t spot any issue with my code. Thanks!

Ethan

#2

This is a Hail bug, thanks for the report. Will fix this morning.

#3

Here’s the fix:

Should go in today, and we can release 0.2.48 in the next day or so.

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