I am trying to annotate the rows (variants) of my matrixtable with all the IDs (mt.s) of the samples that are homozygous reference for the variant. I am not too sure how to go about it, may I get some advice please.
Related topics
Topic | Replies | Views | Activity | |
---|---|---|---|---|
Is there a way to get a list of non-reference heterozygous and homozygous variants by gene for each sample from a MatrixTable? | 0 | 185 | January 8, 2024 | |
Extracing sample IDs into a Python List | 0 | 23 | August 8, 2024 | |
Adding sample IDs of those with non-ref GT as row variable | 2 | 325 | March 17, 2022 | |
Variant annotation in MatrixTable | 13 | 765 | July 3, 2020 | |
Error when trying to annotate a new row with a genotypes of the sample | 2 | 320 | July 13, 2023 |