Hi hail team,
I checked the sample_qc.dp_stats.mean to calculate the mean depth of each sample.
Most samples were expected to be 30-40X, but only 20-30X came out.
When compared by sample, there was a difference between sample qc (Hail) and Depth of coverage (GATK).
I wonder why this difference appears. Could you tell me how to get mean depth from hail sample_qc?