I was trying to convert vcf to the vds and after running for some time, I got below error. It seems that this is due to more than one RSID. Is their a way to tackle this error.
2017-09-17 14:25:10 CoarseGrainedSchedulerBackend$DriverEndpoint: INFO: Launching task 415919 on executor id: 2 hostname: 172.32.65.114.
2017-09-17 14:25:10 TaskSetManager: WARN: Lost task 914.0 in stage 4.0 (TID 415833, 172.32.65.114): is.hail.utils.HailException: QGP2935.JC_GATK37.dbSnp_GRCh37.vcf: caught scala.MatchError: ([369037667, 6678753],Int32) (of class scala.Tuple2)
offending line: 1 18366031 rs6678753;rs369037667 G A 129.08 PASS AC=16;AF=0…
at is.hail.utils.ErrorHandling$class.fatal(ErrorHandling.scala:17)
at is.hail.utils.package$.fatal(package.scala:27)
at is.hail.utils.TextContext.wrapException(Context.scala:15)
at is.hail.utils.WithContext.map(Context.scala:27)
at is.hail.io.vcf.LoadVCF$$anonfun$10$$anonfun$apply$6.apply(LoadVCF.scala:295)
at is.hail.io.vcf.LoadVCF$$anonfun$10$$anonfun$apply$6.apply(LoadVCF.scala:294)
at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
at org.apache.spark.shuffle.sort.UnsafeShuffleWriter.write(UnsafeShuffleWriter.java:161)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:79)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:47)
at org.apache.spark.scheduler.Task.run(Task.scala:86)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)