Hi there, I’m wondering if it’s possible at all to query the annotation databases on a local machine?? For example, I am trying to get rsid’s for summary statistics. I can implement annotate_rows_db after starting a cluster dataproc, but if I try to run the same commands on my local machine in python, after i get to this step
spiroukb_ht = db.annotate_rows_db(spiro, 'dbSNP_rsid')
i get the error
Error summary: UnsupportedFileSystemException: No FileSystem for scheme "gs"
thanks very much!
No, this is not possible, you must use Google Dataproc or Amazon EMR if you want to use the annotation database. We only host copies in Google and Amazon.