In this run with over 5K gvcfs,
hl.experimental.run_combiner(inputs, out_file=output_file, tmp_path=temp_bucket, branch_factor=100, batch_size=100, reference_genome=‘GRCh38’, use_genome_default_intervals=True)
I got an error message :
JsonMappingException: No content to map due to end-of-input
This error occurred in the second round which is to merge 51 MTs to 1 MTs.
Please let me know how to solve this. Thank you.