Hi, when I split multiallelic variants I get an error in one case: hail.utils.java.FatalError: HailException: RVD error! Keys found out of order: Current key: { locus: { contig: chr3, position: 16902883 }, alleles: [2; N, GGGGTGCGC] } Previous key: { locus: { contig: chr3, position: 16902883 },…

Hi! This error is almost always caused by splitting a dataset that already has some split alleles. Do you call split multi hts twice? Is your input dataset already split? Try filtering to the locus printed in the error message and verify your input dataset has exactly one row, not two.

Error split multiallelic

Hail Query & hailctl

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Error split multiallelic

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