I’m currently exporting a MT to VCF using parallel=header_per_shard and noticed that the
.bgz extension is necessary in the provided output path in order to block gzip the shards. This leads to misleading file paths such as
gs://gnomad-mwilson/subsets/test_sharding.bgz/part-0000*.bgz. Would it be possible to add a flag to block zip instead of extracting that info from the file path? Or some other approach to allow for cleaner file paths such as
gs://gnomad-mwilson/subsets/test_sharding/part-0000*.bgz? This isn’t a huge issue but requires a gsutil mv function in order to make cleaner file paths and that can be expensive.