I cannot find the 2-dimensional table that gives the genotype for each (exome locus, sample ID) pair. Is it in gnomad.exomes.r2.1.sites.ht somewhere? I have downloaded that file and can read it into hail with hl.read_table, but I am not seeing what I want within there. Maybe I am failing to understand some of the field names, or maybe I am looking in the wrong place … help please!
Once I’ve found it, I’d like to export it (or parts of it) into a format that can be read into R, such as a TSV file. I am thinking that a write(’/mypath/myfile.tsv.bgz’) will do it, but if I am wrong, please let me know.