Hi,
I am running hail on GCP after starting my cluster using the cloudtools helpers. I am running Hail version devel-5702f5c6b299.
Yesterday my code seemed to be working fine, but today, I am getting the following error. rsid
is listed as a row field in the mt.
Was anything changed?
hl.init()
mt = hl.read_matrix_table('gs://hail-datasets/hail-data/1000_genomes_phase3_autosomes.GRCh37.mt')
mt.describe() ...
mt.rsid.show(5)
ERROR:root:Exception while sending command.
Traceback (most recent call last):
File "/usr/lib/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py", line 1035, in send_command
raise Py4JNetworkError("Answer from Java side is empty")
py4j.protocol.Py4JNetworkError: Answer from Java side is empty
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py", line 883, in send_command
response = connection.send_command(command)
File "/usr/lib/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py", line 1040, in send_command
"Error while receiving", e, proto.ERROR_ON_RECEIVE)
py4j.protocol.Py4JNetworkError: Error while receiving
Thanks for your support.