Hello @nawatts and @tpoterba ,
I tried this command
ht.select(
gnomad_ac=ht.freq[0].AC,
gnomad_af=ht.freq[0].AF,
gnomad_an=ht.freq[0].AN,
gnomad_homozygote_count=ht.freq[0].homozygote_count,
).export("gnomad_v211_genome_counts.tsv")
and it worked without issue, but the locus and alleles are printed as
chr1:10067 ["T","TAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCC"]
Could I get them in this format?
chr\tStart\tEnd\tRef\tAlt\tAC\Homozygotes
Since I need the end positions, I would rather try to get the output from hail itself, rather than parsing this file myself.