I have read a hail matrix table using, read_hail_matraix() function.
while trying annotating it I get the following error:
FatalError: HailException: Invalid locus ‘4:8182062’ found. Contig ‘4’ is not in the reference genome ‘GRCh38’.
it turned out my matrix table config has some issue with chromosome Id and I should have. ‘chr4:8182062’ instead of ‘4:8182062’ .
is there any possibility to recode config from 4 → chr4 while reading the hail table?
such as recode_contig in read_vcf() function?