Hello, I am pretty new to hail, so please excuse if I might ask some basic questions. I would like to use existing CSQ annotations from a vcf which have been created before importing it to hail. Is there some script to smoothly extract the CSQ information in a row field, as hl.vep would do?

Import existing VEP annotations from vcf or CSQ

tpoterba October 9, 2019, 12:46pm 4

what is your pipeline?

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