Hello, I am pretty new to hail, so please excuse if I might ask some basic questions. I would like to use existing CSQ annotations from a vcf which have been created before importing it to hail. Is there some script to smoothly extract the CSQ information in a row field, as hl.vep would do?

Import existing VEP annotations from vcf or CSQ

tpoterba October 9, 2019, 12:46pm 4

what is your pipeline?

Topic		Replies	Views
How to add annotation to a VCF file? Hail Query & hailctl	3	554	September 7, 2020
Best strategy for annotating and filtering VCF files using HAIL-VEP on UKB RAP? Hail Query & hailctl	3	1548	June 17, 2022
VEP custom annotation Help [0.1]	4	1869	January 24, 2018
Sample wise VEP annotation for Rare Variant Disease(Exome) vcf files through hail with my custom databases Hail Query & hailctl	9	374	June 12, 2023
What is the setup required to perform annotations using vep? Hail Query & hailctl	0	618	October 30, 2018