We are trying to use import_table on a set of csv’s. (e.g.
gs://seqr-reference-data/GRCh37/dbNSFP/v2.9.3/dbNSFP2.9.3_variant.chr*.gz). This worked on v01, and import_vcf works on wildcards. We also tried import_table wildcard on local storage and that worked. Is this related to how Spark load’s data?
This doesn’t work? What’s the error?
Sorry totally forgot:
Error summary: FileNotFoundException: Item not found: seqr-reference-data/GRCh37/dbNSFP/v2.9.3/dbNSFP2.9.3_variant.chr*.gz
huh, at some point we took out file globbing accidentally. Will add it back, sorry!
Thanks Tim. I tried digging through to find it but couldn’t, would be interested to see the PR.