Hi,
I am trying to hl.import_vcf from a public S3 bucket with
hl.import_vcf(‘s3-us-west-2.amazonaws.com/human-pangenomics/T2T/CHM13/assemblies/variants/1000_Genomes_Project/chm13v1.1/by_chr/1kgp.chr1.recalibrated.snp_indel.pass.chm13.v1.1.liftover.vcf.gz’, reference_genome=‘chm13’)
I installed the S3 connector as provided by danking in a post on Jun’21
The import_vcf() version above returns
Error summary: UnsupportedFileSystemException: No FileSystem for scheme “s3”,
the version with ‘s3a-us-west’ instead of ‘s3-us.west’ returns
Error summary: NoRouteToHostException: No route to host (Host unreachable)
I am trying this on a local hail installation.
I believe I checked most of the pertinent posts without finding a solution.
Thank you.
jrs