Hi, I am new to hail and trying to implement binary trait in hail. The set up is 1, The phenotype is in 1, 0 format 2, I imported plink file using hl.import_plink and set quant_pheno= False and set it to mt 3, I imported covariate using hl.import_table and use annotate_cols to incorporate covar…

Hey @fengyi , I’m sorry you’re having trouble! In the future, if you share the exact code you ran, we can more easily help you. It is also easier to help you when you copy and paste the exact output you get (like the is_case column). As to your questions: You specified that your trait is not a qu…

Logistic regression implementation

Hail Query & hailctl

danking Split this topic September 23, 2020, 6:47pm 5

2 posts were split to a new topic: When running Logistic Regression Rows I get a Py4JNetworkError

Topic		Replies	Views
Logistic regression on remote servers Hail Query & hailctl	1	432	October 14, 2020
Annotation table for logreg Help [0.1]	4	749	October 16, 2018
Logistic regression on entries Hail Query & hailctl	10	1291	December 6, 2021
Py4JNetworkError when running logistic_regression_rows() Hail Query & hailctl	2	523	October 1, 2020
Error summary: HailException Hail Query & hailctl	4	546	September 26, 2022

Logistic regression implementation

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