Hi, I am new to hail and trying to implement binary trait in hail. The set up is 1, The phenotype is in 1, 0 format 2, I imported plink file using hl.import_plink and set quant_pheno= False and set it to mt 3, I imported covariate using hl.import_table and use annotate_cols to incorporate covar…

Hey @fengyi , I’m sorry you’re having trouble! In the future, if you share the exact code you ran, we can more easily help you. It is also easier to help you when you copy and paste the exact output you get (like the is_case column). As to your questions: You specified that your trait is not a qu…

Logistic regression implementation

Hail Query & hailctl

danking Split this topic September 23, 2020, 6:47pm 5

2 posts were split to a new topic: When running Logistic Regression Rows I get a Py4JNetworkError

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Logistic regression implementation

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