I am using the new manhattan plot function:
hl.plot.manhattan(gwas_linear2.row.linreg.p_value, locus=gwas_linear2.row.locus, title="Practice", size=4, hover_fields=None)
But it returns the “figure id” and not a plot:
Figure( id = '5c5e7417-bc27-40c5-adae-89f24d144cc8', …)
I actually got it to show up! But is there anyway to alter the color or have more that one color?
our plotting functionality is in early stages – it doesn’t scale to large numbers of p values and isn’t especially customizable. It’s possible to set some properties (axis labels, title, size, etc) on the figure returned by manhattan, but things like colors are probably hard.