I’m trying to build a reference table using a different reference genome. Variants were called with bcftools mpileup, bcftools call, and bcftools filter. I didn’t receive any errors on reading the ref from a fasta file (this is for the plant species Sorghum bicolor) nor did I receive any errors on …

Matrix table error

obigbando August 6, 2020, 1:23am 9

Thanks for the suggestion; just did at VCFParseError: ploidy > 2

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