I’m trying to build a reference table using a different reference genome. Variants were called with bcftools mpileup, bcftools call, and bcftools filter. I didn’t receive any errors on reading the ref from a fasta file (this is for the plant species Sorghum bicolor) nor did I receive any errors on …

Matrix table error

obigbando August 6, 2020, 1:23am 9

Thanks for the suggestion; just did at VCFParseError: ploidy > 2

Topic		Replies	Views
Unable to write MatrixTable (VCFParseError) Hail Query & hailctl	3	370	July 20, 2022
Unable to create matrix table of gnomAD chr1, chr2 Hail Query & hailctl	2	296	January 3, 2023
Fail to read a T2T VCF Feature Requests	8	380	January 7, 2023
FatalError while importing vcf file Hail Query & hailctl	2	434	November 14, 2019
Unable to load VCF file Hail Query & hailctl	2	399	January 27, 2022