Hi, I know this error has been asked and answered but it still not fixes my problem. I have an account on the computing cluster and the space limitted for each user in his/her home folder is 10 MB. I sucessfully install Hail and download the Gnomad data. But to process it, I got an error “hail.uti…

Set tmp_dir in hl.init to a directory with plenty of space.

Thanks. It fixed my error. But I got another error “java.lang.OutOfMemoryError: Java heap space”. Can we also set a parameter in the init function to fix this?

[image] How do I increase the memory or RAM available to the JVM when I start Hail through Python? Hail Query & hailctl I’m using Hail via IPython on my laptop, like this: import hail as hl ibd = hl.read_matrix_table("/path/to/my.mt").identity_by_descent() When I try to…

Thanks danking. The solution from olavur below works for me. import hail as hl hl.init(spark_conf={‘spark.driver.memory’: ‘100g’})

"No space left" error with Hail installed using conda

Hail Query & hailctl

danking October 19, 2022, 3:50pm 4

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"No space left" error with Hail installed using conda

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