Hey hail team, I’m running into a weird bug. I’m running (version 0.2.28-61941242c15d): data_source = 'broad' freeze = 5 hardcalls = get_ukbb_data(data_source, freeze, raw=False, split=True, adj=False) sample_map_ht = hl.read_table(array_sample_map_ht(data_source, freeze)) sample_map = hl.import_…

This is one for @patrick-schultz

can you try updating to 0.2.29? I think this might be fixed already

I just tried import hail as hl from ukbb_qc.resources import * hl.init(default_reference='GRCh38', log='/test.log') data_source = 'broad' freeze = 5 #mt = get_ukbb_data(data_source, freeze, raw=True, split=False) hardcalls = get_ukbb_data(data_source, freeze, raw=False, split=True, adj=False) s…

Can replicate this locally. Totally a “bad error message” bug, the one you should have gotten is: ExpressionException: scope violation: 'MatrixTable.aggregate_cols' supports aggregation over indices ['column'] Found indices ['column', 'row'], with unexpected indices ['row']. Invalid fields: …

Fixed here: [hail] Fix bad error messages in aggregator transformations hail-is:master ← tpoterba:aggregate-cols-scope-violation opened 03:52PM - 19 Dec 19 UTC (UTC) [tpoterba] …

Strange keyerror (KeyError: 'g')

Hail Query & hailctl

danking December 18, 2019, 8:52pm 3

see conversation at Java errors in notebook

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Strange keyerror (KeyError: 'g')

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