Using version 0.2.132-678e1f52b999….
sum_all=hl.summarize_variants(mt,show=False)
This line is generating an error when dividing by 0 when calculating the Ti/Tv ratio. The matrix table contains only structural variants so it should be skipping this calculation.
Traceback (most recent call last):========================> (21 + 3) / 24]
File “/restricted/projectnb/cadre/sv.pipeline/summarize_variants_ac5.py”, line 24, in
sum_all=hl.summarize_variants(mt,show=False)
File “”, line 2, in summarize_variants
File “/share/pkg.8/hail/0.2.132/install/lib/python3.10/site-packages/hail/typecheck/check.py”, line 585, in wrapper
return original_func(*args, **kwargs)
File “/share/pkg.8/hail/0.2.132/install/lib/python3.10/site-packages/hail/methods/qc.py”, line 1808, in summarize_variants
r_ti_tv=nti / ntv,
ZeroDivisionError: division by zero