Hi, I am suddenly getting this or similar errors when I try to write out files in hail:
Hail version: 0.2.53-96ec0aef3db7
Error summary: FileNotFoundException: /media/veracrypt10/Analyses/Analyses/scz_allentries.mt/rows/rows/parts/part-08495-19-8495-0-f6a750fd-d6e5-93c6-d136-ded5ed361c17 (Too many open files). Command run: mt.rows().select(‘qc’, ‘control_qc’, ‘case_qc’).flatten().export(‘Analyses/final_qc.variants.tsv.bgz’)
I also had a similar error when I tried to run: mt_rows.write(‘annotations/gene.ht’, overwrite=True). In both instances the file that could not be found exists and I’m not sure what “too many open files” means in this context.
I would appreciate any assistance you can provide.