Hi,
I am running locally vcf_combiner.py on 500 vcfs (not gvcf) and I’ve got this error:
RVD error! Keys found out of order:
Current key: {locus: {contig: chrM, position,41},alleles: [2;C,G] }
Previous key: {locus: {contig: chrM, position,41},alleles: [2;C,T] }
How can I avoid this. How can I effectively combine vcf to one matrix table?
Thank you Radim