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Working with large VCFs (e.g. from UK Biobank) is slow
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12
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1889
|
August 23, 2024
|
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Using HDFS on EMR
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3
|
60
|
August 23, 2024
|
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Extracing sample IDs into a Python List
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0
|
31
|
August 8, 2024
|
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Filtering samples from VDS in Google cloud
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11
|
513
|
August 6, 2024
|
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Hail installation fail at No rule to make target `jni.h' even after setting JAVA_HOME
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0
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24
|
August 1, 2024
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How to recode config in a matrix table
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0
|
18
|
July 29, 2024
|
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AssertionError: assertion failed
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2
|
237
|
July 26, 2024
|
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Cannot Get Sequence Information
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0
|
36
|
July 26, 2024
|
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Submit script giving ModuleNotFoundError: No module named ‘gnomad’
|
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4
|
48
|
July 16, 2024
|
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How to deploy the latest Hail 0.2 on AWS EMR?
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3
|
413
|
July 11, 2024
|
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Annotating VCF from gnomad VCF and merge join tables in general
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3
|
174
|
July 9, 2024
|
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MethodTooLargeException when running vds.combiner
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2
|
98
|
June 30, 2024
|
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No FileSystem for scheme "gs"
|
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2
|
914
|
June 21, 2024
|
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Duplicated Loci error on VDS Combiner
|
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3
|
83
|
June 20, 2024
|
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Pre-VEPed reference table
|
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0
|
52
|
June 18, 2024
|
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Request for Feedback on Hail-Adjacent System
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2
|
85
|
June 17, 2024
|
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Export_vcf very slow
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0
|
87
|
June 16, 2024
|
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Pc_rel memory issue: ConnectionRefusedError: [Errno 111] Connection refused
|
|
10
|
770
|
June 11, 2024
|
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LineTooLong Error after union_rows
|
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0
|
97
|
June 7, 2024
|
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Accessing intervals and alleles in matrix table
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3
|
161
|
June 5, 2024
|
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Trying to recode output from imputed_sex to 0 or 1
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3
|
76
|
May 31, 2024
|
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Isolating Split Variants from VDS
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0
|
79
|
May 24, 2024
|
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Shortening MT writing / export_vcf in Variant QC
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0
|
123
|
May 23, 2024
|
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Hail fails after installing it on a single computer
|
|
5
|
387
|
May 23, 2024
|
|
Error in load_dataset()
|
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6
|
207
|
May 23, 2024
|
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ConnectionError after mt.aggregate_cols(hl.agg.collect(…)) and hl.nd.array() in _linear_skat
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|
1
|
196
|
May 22, 2024
|
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VDS combiner unsuccesful on large cohort
|
|
2
|
186
|
May 22, 2024
|
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Split huge multi-sample VCF
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1
|
433
|
May 17, 2024
|
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Question about Ordering unsorted dataset with network shuffle
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0
|
146
|
May 16, 2024
|
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Ploidy error when trying to extract X-chromosome snps
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3
|
155
|
May 16, 2024
|