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PRS calculation using hail matrix
|
|
0
|
35
|
September 13, 2024
|
|
Computation speed of hail aggregation
|
|
11
|
670
|
September 11, 2024
|
|
Working with large VCFs (e.g. from UK Biobank) is slow
|
|
12
|
1733
|
August 23, 2024
|
|
Using HDFS on EMR
|
|
3
|
36
|
August 23, 2024
|
|
Extracing sample IDs into a Python List
|
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0
|
26
|
August 8, 2024
|
|
Filtering samples from VDS in Google cloud
|
|
11
|
461
|
August 6, 2024
|
|
Hail installation fail at No rule to make target `jni.h' even after setting JAVA_HOME
|
|
0
|
14
|
August 1, 2024
|
|
How to recode config in a matrix table
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0
|
18
|
July 29, 2024
|
|
AssertionError: assertion failed
|
|
2
|
229
|
July 26, 2024
|
|
Cannot Get Sequence Information
|
|
0
|
28
|
July 26, 2024
|
|
Submit script giving ModuleNotFoundError: No module named ‘gnomad’
|
|
4
|
31
|
July 16, 2024
|
|
How to deploy the latest Hail 0.2 on AWS EMR?
|
|
3
|
396
|
July 11, 2024
|
|
Illegal reflective access
|
|
0
|
36
|
July 9, 2024
|
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Annotating VCF from gnomad VCF and merge join tables in general
|
|
3
|
113
|
July 9, 2024
|
|
MethodTooLargeException when running vds.combiner
|
|
2
|
74
|
June 30, 2024
|
|
No FileSystem for scheme "gs"
|
|
2
|
542
|
June 21, 2024
|
|
Duplicated Loci error on VDS Combiner
|
|
3
|
71
|
June 20, 2024
|
|
Pre-VEPed reference table
|
|
0
|
50
|
June 18, 2024
|
|
Request for Feedback on Hail-Adjacent System
|
|
2
|
82
|
June 17, 2024
|
|
Export_vcf very slow
|
|
0
|
71
|
June 16, 2024
|
|
Pc_rel memory issue: ConnectionRefusedError: [Errno 111] Connection refused
|
|
10
|
562
|
June 11, 2024
|
|
LineTooLong Error after union_rows
|
|
0
|
80
|
June 7, 2024
|
|
Accessing intervals and alleles in matrix table
|
|
3
|
116
|
June 5, 2024
|
|
Trying to recode output from imputed_sex to 0 or 1
|
|
3
|
69
|
May 31, 2024
|
|
Isolating Split Variants from VDS
|
|
0
|
74
|
May 24, 2024
|
|
Shortening MT writing / export_vcf in Variant QC
|
|
0
|
96
|
May 23, 2024
|
|
Hail fails after installing it on a single computer
|
|
6
|
354
|
May 23, 2024
|
|
Error in load_dataset()
|
|
6
|
187
|
May 23, 2024
|
|
ConnectionError after mt.aggregate_cols(hl.agg.collect(…)) and hl.nd.array() in _linear_skat
|
|
1
|
187
|
May 22, 2024
|
|
VDS combiner unsuccesful on large cohort
|
|
2
|
151
|
May 22, 2024
|