Hello team,
I am trying to annotate variants in a matrix table with 1000genomes database. I would like to get the population allele frequency from 1000genomes for the matching variants in my matrix table. I was able to do this for gnomAD using the following code:
db = hl.experimental.DB(region=‘us’, cloud=‘aws’)
ann_mt = db.annotate_rows_db(mt, ‘gnomad_genome_sites’)
Is there a database for 1000genomes that I can plug in the above db.annotate_rows_db() function? Or should I use the hl.experimental.load_dataset() if there is built-in 1000genomes dataset available?
Thanks very much for your help!