I am having problem with hail.methods.vep
Applying vep is not giving any errors but when writing it to a matrix table is giving error maybe because vep is not applied successfully(but not giving error while calling hail.method.vep on my dataset).
Also when writing vep annotations, it is just writing entities, index & rows but not other things like globals, cols, references, hence giving the error;
Hail version: 0.2.23-aaf52cafe5ef
Error summary: IOException: error=2, No such file or directory