Cant write out vep annotated vcf file


I have no problem using export_vcf on a normal MatrixTable after filtering, but when i use vep to annotate the file and apply the same function, it gives me an IO:Error, file or directory does not exist.
I have checked and the directory to which I try to write does exist.
What is wrong?
KR Mathias.


What’s the full stack trace? This is probably an error related to VEP, not write.


You are probably right, this is another example of failure.


What VEP config are you using?