I’ve been having some trouble while performing the .write operation in the middle of of my hail compilation. I believe this step is technically a checkpoint, but I’m confused as to what I might have done in translating my data into this workflow that might cause it not to work.
The error I’m getting is:
HailUserError: Error summary: HailException: in file /path/to/file/ancnumber0.hapcount.txt on line 84501 at value ‘G’:
error parsing value into int32 at column id ‘REF’ for entry field ‘x’
Any clarification on why this error would be occurring especially during this step in processing, or potential fixes would be greatly appreciated.
Sorry for any inconvenience,