I was wondering if it would be easy to make couple minor changes to a subsetted vcf.
The “AN”, “AC”, and “AF” INFO fields are not updated to reflect the fact that there are now fewer samples in the subsetted vcf. Is this expected? Is there an easy Hail command to update them?
Hail changes floats that were originally “0.000” to “0.00000e+00". Is there a simple way for them to keep it the original way?