Hi fantastic hail team, Here is my simple question: let’s say I have a list of genes("/path/gene_list.tsv") and I would like to extract the gnomad(v2/v3) data for this gene list. I have tried it by below code and I am not getting the results as expected. Could you please help with where I do it wr…

[image] amirfeizi: Also why when I try to download the hail table from gs:// it only can be downloaded as hail table not hail matrixtable The released gnomAD data is site-level summary data, not the genotype-level matrix table. The genotypes cannot be made public for privacy reasons. [ima…

Querying gnomad using hail table by gene symbol

Hail Query & hailctl

danking Split this topic June 22, 2020, 2:03pm 5

3 posts were split to a new topic: Filtering is really fast but show is really slow, why is that?

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Querying gnomad using hail table by gene symbol

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