Just a small note on a typo in the description of the impute_sex():
" Remove samples where imputed sex does not equal reported sex: "
imputed_sex = hl.impute_sex(dataset.GT) dataset_result = dataset.filter_cols(imputed_sex[dataset.s].is_female != dataset.pheno.is_female)
Using this function you would remove the samples where imputed sex equals reported sex. I suppose it should be “ == “ instead of “ != “ in order to remove those samples where imputed sex does not match reported sex?