I’m relatively new to hail, but with help of some people on here, I have figured out how to load a few thousand samples into a large VDS. The final, but crucial step for our project is to now create a single VCF file with a calculated AF field based on how many times each mutation is listed in our VDS.
I feel like this is something that there is documentation for, but I can’t seem to find an example. Can you point me in the right direction?