|
Are 0/0 genotypes counted as defined in hl.is_defined(mt.GT)? And are NA genotypes counted as missing in hl.is_missing(mt.GT)?
|
|
1
|
122
|
April 26, 2024
|
|
UK Biobank RAP - Generating Summary File from Variant QC
|
|
3
|
159
|
April 26, 2024
|
|
Aggregating a numeric array
|
|
2
|
231
|
April 11, 2024
|
|
Distributing import_vcf and multi_way_union_mts across Spark workers
|
|
0
|
123
|
April 11, 2024
|
|
Outputting sample IDs for multi allelic sites
|
|
5
|
188
|
April 10, 2024
|
|
Trinucleotide Count
|
|
0
|
107
|
April 1, 2024
|
|
Hail Tutorial Error
|
|
0
|
149
|
March 31, 2024
|
|
Unable to connect to Jupyter notebook
|
|
2
|
231
|
March 27, 2024
|
|
Is there a more computationally efficient way to get a single variant from VDS?
|
|
3
|
169
|
March 27, 2024
|
|
REF ALT miss-matching after split multi-allelic lines
|
|
4
|
162
|
March 27, 2024
|
|
Understanding how hwe_normalized_pca works
|
|
2
|
286
|
March 26, 2024
|
|
NA causes export errors out
|
|
4
|
169
|
March 26, 2024
|
|
Write compressed Tables/Matrices
|
|
1
|
135
|
March 25, 2024
|
|
Unable to flatten sample/gene counts for table export
|
|
4
|
471
|
March 21, 2024
|
|
Arrangement of the scores output for hl.pca
|
|
4
|
123
|
March 18, 2024
|
|
How to add new columns in Hail table?
|
|
4
|
654
|
March 12, 2024
|
|
MatrixTable.filter_rows produces error for data on Secure Lustre
|
|
6
|
475
|
March 11, 2024
|
|
Hailctl dataproc submit fails with 'no user project provided'
|
|
3
|
172
|
March 9, 2024
|
|
Using VCF non GT column
|
|
14
|
222
|
March 4, 2024
|
|
When I try to create a Dataproc cluster I get PERMISSION_DENIED
|
|
1
|
204
|
February 28, 2024
|
|
Hail/Apache Spark Not Scaling by Cluster Size
|
|
2
|
186
|
February 21, 2024
|
|
Returning beta estimates for multiple covariates
|
|
0
|
130
|
February 19, 2024
|
|
Running HAIL on more than one compute node
|
|
0
|
150
|
February 15, 2024
|
|
java.lang.NoClassDefFoundError: Could not initialize class is.hail.methods.IBSFFI$
|
|
0
|
140
|
February 14, 2024
|
|
Filter by Position Overlap between two VCFs
|
|
3
|
201
|
February 8, 2024
|
|
Error reading filename with brackets (DNAnexus)
|
|
0
|
177
|
January 18, 2024
|
|
Male heterozygotes on X chromosome
|
|
0
|
183
|
January 11, 2024
|
|
Is there a way to get a list of non-reference heterozygous and homozygous variants by gene for each sample from a MatrixTable?
|
|
0
|
185
|
January 8, 2024
|
|
Error summary: ChecksumException: Checksum error
|
|
0
|
243
|
January 11, 2024
|
|
Aggregate GT over rows
|
|
2
|
194
|
January 9, 2024
|