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Working with large VCFs (e.g. from UK Biobank) is slow
|
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12
|
2072
|
August 23, 2024
|
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Using HDFS on EMR
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3
|
110
|
August 23, 2024
|
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Extracing sample IDs into a Python List
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0
|
38
|
August 8, 2024
|
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Filtering samples from VDS in Google cloud
|
|
11
|
606
|
August 6, 2024
|
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Hail installation fail at No rule to make target `jni.h' even after setting JAVA_HOME
|
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0
|
33
|
August 1, 2024
|
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How to recode config in a matrix table
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0
|
34
|
July 29, 2024
|
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AssertionError: assertion failed
|
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2
|
257
|
July 26, 2024
|
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Cannot Get Sequence Information
|
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0
|
54
|
July 26, 2024
|
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Submit script giving ModuleNotFoundError: No module named ‘gnomad’
|
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4
|
80
|
July 16, 2024
|
|
How to deploy the latest Hail 0.2 on AWS EMR?
|
|
3
|
433
|
July 11, 2024
|
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Annotating VCF from gnomad VCF and merge join tables in general
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3
|
260
|
July 9, 2024
|
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MethodTooLargeException when running vds.combiner
|
|
2
|
140
|
June 30, 2024
|
|
No FileSystem for scheme "gs"
|
|
2
|
1160
|
June 21, 2024
|
|
Duplicated Loci error on VDS Combiner
|
|
3
|
98
|
June 20, 2024
|
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Pre-VEPed reference table
|
|
0
|
56
|
June 18, 2024
|
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Request for Feedback on Hail-Adjacent System
|
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2
|
103
|
June 17, 2024
|
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Export_vcf very slow
|
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0
|
122
|
June 16, 2024
|
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Pc_rel memory issue: ConnectionRefusedError: [Errno 111] Connection refused
|
|
10
|
848
|
June 11, 2024
|
|
LineTooLong Error after union_rows
|
|
0
|
110
|
June 7, 2024
|
|
Accessing intervals and alleles in matrix table
|
|
3
|
216
|
June 5, 2024
|
|
Trying to recode output from imputed_sex to 0 or 1
|
|
3
|
84
|
May 31, 2024
|
|
Isolating Split Variants from VDS
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|
0
|
91
|
May 24, 2024
|
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Shortening MT writing / export_vcf in Variant QC
|
|
0
|
138
|
May 23, 2024
|
|
Hail fails after installing it on a single computer
|
|
5
|
458
|
May 23, 2024
|
|
Error in load_dataset()
|
|
6
|
255
|
May 23, 2024
|
|
ConnectionError after mt.aggregate_cols(hl.agg.collect(…)) and hl.nd.array() in _linear_skat
|
|
1
|
215
|
May 22, 2024
|
|
VDS combiner unsuccesful on large cohort
|
|
2
|
230
|
May 22, 2024
|
|
Split huge multi-sample VCF
|
|
1
|
457
|
May 17, 2024
|
|
Question about Ordering unsorted dataset with network shuffle
|
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0
|
153
|
May 16, 2024
|
|
Ploidy error when trying to extract X-chromosome snps
|
|
3
|
198
|
May 16, 2024
|