Topic Replies Activity
How to filter phenotype file based on sample ID? 16 December 11, 2019
Hail 0.2 building from source fails on AWS EMR: No rule to make target `jni.h' 3 December 11, 2019
Reading multiple matrix tables 2 December 11, 2019
Incompatible file format ,supported version: 1.1.0, found 1.2.0 3 December 11, 2019
Import json annotations 4 December 10, 2019
Hl.plot.output_notebook() 2 December 10, 2019
First tutorial: IllegalArgumentException 3 December 9, 2019
Building Hail 0.2 from source fails for Spark 2.4.4: scala.language.existentials issue 3 December 5, 2019
Annotate genomic intervals (not variants) with cadd scores 9 December 5, 2019
Read DBNSFP file 12 December 2, 2019
Import existing VEP annotations from vcf or CSQ 11 November 27, 2019
Get fasta sequence for a given interval 3 November 26, 2019
ArrayIndexOutOfBoundsException 23 November 21, 2019
Unread block data error (Spark master - slave issue) 10 November 21, 2019
Densify sparse mt 7 November 21, 2019
Exporting a 20M variant x 400K sample MatrixTable to (ideally) BGEN format 3 November 20, 2019
GQ set to NA when PL is NA after split_multi_hts 5 November 20, 2019
Vcf parsing: hail 0.2 vs cyvcf2 vs pysam 4 November 20, 2019
Spark 2.4.4 gets stuck in initialization phase 5 November 19, 2019
Hail 0.2.27 not running on Cloudera spark 2.4.0 9 November 19, 2019
[Hail 0.2] Merge two MatrixTable 12 November 19, 2019
VEP: add field hgvsg 3 November 18, 2019
Partially missing genotypes 4 November 15, 2019
Export VCF header 2 November 15, 2019
TypeError: 'JavaPackage' object is not callable 31 November 15, 2019
Hail Py4JError while calling z:is.hail.backend.spark.SparkBackend.executeJSON 30 November 14, 2019
FatalError while importing vcf file 3 November 14, 2019
VCFParseError on write MatrixTable 2 November 14, 2019
VCFParseError: invalid INFO key 2 November 12, 2019
How do I get an odds ratio from Hail's logistic regression results? 4 October 31, 2019