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Spark memory error trying to write matrixtable
|
|
3
|
95
|
January 11, 2023
|
|
VDS to VCF with calculated AF field
|
|
4
|
88
|
January 10, 2023
|
|
Unable to do sample/variant QC after combining MatrixTable
|
|
11
|
64
|
January 8, 2023
|
|
Fail to read a T2T VCF
|
|
8
|
46
|
January 7, 2023
|
|
Error at value 'G': error parsing value into int32 at column id 'REF' for entry field 'x'
|
|
2
|
29
|
January 6, 2023
|
|
Hail batch job submission problem
|
|
2
|
30
|
January 5, 2023
|
|
Executor Lost Failure when writing out a MT for WGS pvcf
|
|
2
|
33
|
January 5, 2023
|
|
VariantDatasetCombiner - dataset contains both multiallelic variants and duplicated loci for review
|
|
8
|
37
|
January 3, 2023
|
|
Unable to create matrix table of gnomAD chr1, chr2
|
|
2
|
45
|
January 3, 2023
|
|
Big picture issues: considering switching to HAIL
|
|
6
|
2458
|
January 3, 2023
|
|
MatrixTable file not being written in working directory
|
|
2
|
44
|
December 29, 2022
|
|
I'm encountering "Bucket is a requester pays bucket but no user project provided."
|
|
11
|
651
|
December 22, 2022
|
|
Vep config hailctl dataproc
|
|
4
|
38
|
December 21, 2022
|
|
Problem loading multiple csv files for annotation on DNAnexus
|
|
8
|
67
|
December 21, 2022
|
|
PheWAS on DNAnexus UKB RAP
|
|
13
|
115
|
December 21, 2022
|
|
ClassFormatError when writing matrixtable
|
|
4
|
53
|
December 21, 2022
|
|
Case-control imbalance
|
|
1
|
47
|
December 19, 2022
|
|
Variant_qc, AC, AF allele order
|
|
2
|
35
|
December 16, 2022
|
|
Too many open files error
|
|
19
|
516
|
December 16, 2022
|
|
Extract transmitted/non-transmitted variants
|
|
9
|
51
|
December 16, 2022
|
|
Open gvcf files
|
|
1
|
43
|
December 16, 2022
|
|
More efficient way to extract calls?
|
|
2
|
52
|
December 14, 2022
|
|
Matrixtable filtering and LD pruning Error message - No space left on device
|
|
4
|
55
|
December 14, 2022
|
|
Combine locus and alleles into a row annotation
|
|
1
|
33
|
December 12, 2022
|
|
Importing many sample-specific VCFs
|
|
12
|
511
|
December 12, 2022
|
|
Error in hl.split_multi_hts() output on UK Biobank data?
|
|
2
|
71
|
December 10, 2022
|
|
Filter out variants on sex chromosomes from matrixtable
|
|
2
|
46
|
December 9, 2022
|
|
Hail MT Directory Size
|
|
9
|
50
|
December 7, 2022
|
|
Filter_entries() not working for positive values
|
|
0
|
11
|
December 7, 2022
|
|
Error summary: HailException: invalid interval expression: '17:8002615-8020342'
|
|
9
|
56
|
December 7, 2022
|